Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (75%)	14	0.92199	1	0.22549	1	0.47584	1	0.29569	1	0.18336	1	0.18662	1	0.24087	1	0.49036	1
amp_2p14	28 (50%)	28	0.49869	1	0.02622	1	0.0069599	1	0.079919	1	0.48762	1	0.24692	1	0.38243	1	0.083929	1
amp_2q13	29 (52%)	27	0.38605	1	0.01623	1	0.04654	1	0.31898	1	1	1	0.66447	1	0.84147	1	0.33622	1
amp_3p25.1	20 (36%)	36	0.02951	1	0.51179	1	0.2987	1	0.11282	1	0.23131	1	0.065579	1	0.46515	1	0.17911	1
amp_3q26.2	37 (66%)	19	0.00151	0.741	0.0051599	1	0.090029	1	0.15602	1	0.34913	1	0.24175	1	0.73084	1	0.10665	1
amp_4p16.3	25 (45%)	31	0.02998	1	0.13058	1	0.3858	1	0.18986	1	0.97619	1	0.28968	1	0.87735	1	0.666	1
amp_5p13.2	26 (46%)	30	0.057369	1	0.57208	1	0.24468	1	0.056109	1	0.92921	1	0.04561	1	0.97649	1	0.1408	1
amp_6p24.2	37 (66%)	19	0.10877	1	0.97085	1	0.68834	1	0.36048	1	0.87417	1	0.4999	1	0.86128	1	0.57564	1
amp_8p11.21	33 (59%)	23	0.37399	1	0.62701	1	0.67959	1	0.55739	1	0.62161	1	1	1	0.7905	1	0.95517	1
amp_8q11.23	38 (68%)	18	0.14749	1	0.22578	1	0.1997	1	0.16442	1	0.77067	1	0.92231	1	0.72919	1	0.95827	1
amp_8q24.21	42 (75%)	14	0.04384	1	0.75653	1	0.18919	1	0.33968	1	0.0383	1	0.03169	1	0.01681	1	0.062689	1
amp_8q24.21	40 (71%)	16	0.0074099	1	0.35696	1	0.080169	1	0.11718	1	0.04852	1	0.062909	1	0.01796	1	0.10615	1
amp_10q22.2	26 (46%)	30	0.24612	1	0.49167	1	0.96505	1	0.92342	1	0.72572	1	0.74042	1	0.59899	1	0.71981	1
amp_11q13.1	19 (34%)	37	0.46081	1	0.64844	1	0.32651	1	0.30153	1	0.76037	1	1	1	0.67001	1	0.8693	1
amp_12q12	22 (39%)	34	0.16199	1	0.10683	1	0.25263	1	0.40316	1	0.92777	1	1	1	0.68908	1	0.79452	1
amp_12q15	17 (30%)	39	0.46933	1	0.3776	1	0.2516	1	0.70182	1	0.79882	1	0.16637	1	0.55635	1	0.57234	1
amp_13q31.3	25 (45%)	31	0.4066	1	0.44253	1	0.13875	1	0.117	1	0.086499	1	0.0374	1	0.03078	1	0.04071	1
amp_16p11.2	20 (36%)	36	0.00455	1	0.28029	1	0.65533	1	0.072939	1	0.76006	1	0.411	1	0.40243	1	0.14054	1
amp_17q12	27 (48%)	29	0.93929	1	0.18895	1	0.3344	1	0.45799	1	0.34299	1	0.78536	1	0.63919	1	1	1
amp_17q25.1	32 (57%)	24	0.64021	1	0.01216	1	0.63193	1	0.30681	1	0.68704	1	0.72062	1	0.50358	1	0.75604	1
amp_19p13.2	19 (34%)	37	0.39436	1	0.27084	1	0.79662	1	0.32279	1	0.34626	1	0.2749	1	0.21475	1	0.66468	1
amp_19q12	45 (80%)	11	0.00057999	0.287	7.9999e-05	0.0397	0.19557	1	0.01959	1	0.6445	1	0.50002	1	0.44034	1	0.58249	1
amp_20q11.21	48 (86%)	8	0.01411	1	0.16681	1	0.54382	1	0.42349	1	0.16131	1	0.14413	1	0.12808	1	0.19223	1
amp_20q11.21	48 (86%)	8	0.15514	1	0.25529	1	0.1935	1	0.31607	1	0.17781	1	0.35249	1	0.14736	1	0.57191	1
amp_xp11.21	28 (50%)	28	0.26752	1	0.56629	1	0.04884	1	0.29984	1	0.02854	1	0.099669	1	0.081349	1	0.088019	1
del_1p36.21	19 (34%)	37	0.083039	1	0.37779	1	0.34782	1	0.081599	1	0.13452	1	0.02431	1	0.12099	1	0.10156	1
del_2q22.1	11 (20%)	45	0.50155	1	0.54547	1	0.52599	1	0.17123	1	0.5509	1	0.55508	1	0.28435	1	0.16247	1
del_3p21.1	37 (66%)	19	0.42812	1	0.46025	1	0.4659	1	0.43329	1	0.51893	1	0.76813	1	0.48982	1	0.25522	1
del_3p14.1	30 (54%)	26	1	1	0.65135	1	0.17227	1	0.61944	1	0.087419	1	0.53746	1	0.20457	1	0.13297	1
del_3q13.31	19 (34%)	37	0.11665	1	0.098889	1	0.92264	1	0.15856	1	0.97219	1	0.6547	1	0.70677	1	0.61695	1
del_4q22.1	37 (66%)	19	0.064269	1	0.055469	1	0.02455	1	0.15449	1	0.01237	1	0.12531	1	0.0245	1	0.14005	1
del_4q34.3	37 (66%)	19	0.00425	1	0.01984	1	0.01098	1	0.04045	1	0.00298	1	0.2011	1	0.0081799	1	0.10117	1
del_5q11.2	26 (46%)	30	0.15296	1	0.092199	1	0.58544	1	0.45032	1	0.54868	1	0.29502	1	0.077889	1	0.12021	1
del_6q26	10 (18%)	46	0.52833	1	0.5426	1	0.12099	1	0.70077	1	0.32978	1	0.29978	1	0.17436	1	0.71882	1
del_7q11.22	12 (21%)	44	0.26488	1	0.5088	1	0.76059	1	0.83378	1	0.86114	1	0.53264	1	0.80843	1	0.87562	1
del_7q36.2	20 (36%)	36	0.1686	1	0.16928	1	0.49385	1	0.27339	1	0.40114	1	0.04583	1	0.54776	1	0.26467	1
del_8p21.3	32 (57%)	24	0.00063999	0.316	0.45047	1	0.26738	1	0.32734	1	0.81191	1	0.28691	1	0.44256	1	0.70735	1
del_9p23	34 (61%)	22	0.094759	1	0.12186	1	0.63648	1	0.32496	1	0.50327	1	0.42524	1	0.88855	1	0.24997	1
del_9q21.13	39 (70%)	17	0.10832	1	0.32363	1	0.21168	1	0.25415	1	0.47858	1	0.32034	1	0.67812	1	0.65326	1
del_9q33.3	38 (68%)	18	0.44776	1	0.066309	1	0.087029	1	0.16938	1	1	1	0.10269	1	0.85572	1	0.44654	1
del_10q21.1	18 (32%)	38	0.56062	1	0.39697	1	0.60327	1	0.31773	1	0.46979	1	0.29273	1	0.31211	1	0.55396	1
del_10q23.31	20 (36%)	36	0.14208	1	0.1035	1	0.12268	1	0.24572	1	0.75981	1	0.85295	1	0.59111	1	0.90626	1
del_11p15.5	25 (45%)	31	0.18988	1	0.76627	1	0.89868	1	0.8948	1	0.726	1	0.89661	1	0.2388	1	0.83111	1
del_11q14.1	26 (46%)	30	0.64779	1	0.21634	1	1	1	0.92208	1	0.26811	1	0.52514	1	0.26072	1	0.29344	1
del_11q24.2	27 (48%)	29	0.56526	1	0.03149	1	0.1393	1	0.78352	1	0.2477	1	0.6205	1	0.25254	1	0.281	1
del_12q23.1	20 (36%)	36	0.66063	1	0.89769	1	0.65518	1	0.74953	1	0.94991	1	0.33993	1	0.92876	1	0.65039	1
del_12q24.31	20 (36%)	36	0.81319	1	0.82533	1	0.15465	1	0.25888	1	0.5622	1	0.88727	1	0.14982	1	0.91417	1
del_13q12.11	30 (54%)	26	0.46814	1	0.01979	1	0.37258	1	0.20807	1	0.72336	1	0.02562	1	0.48732	1	0.087599	1
del_13q14.2	32 (57%)	24	0.59892	1	0.00045	0.223	0.01329	1	0.02093	1	0.47913	1	0.15614	1	0.14046	1	0.30431	1
del_14q21.1	28 (50%)	28	0.73199	1	0.0499	1	0.063199	1	0.056119	1	0.37991	1	0.37924	1	0.35549	1	0.663	1
del_15q15.1	43 (77%)	13	0.03986	1	0.03124	1	0.34774	1	0.76785	1	0.11701	1	0.34522	1	0.04931	1	0.24314	1
del_16p13.3	33 (59%)	23	0.16345	1	0.55148	1	0.56878	1	0.22755	1	0.34651	1	0.38986	1	0.60365	1	0.17331	1
del_16q23.1	39 (70%)	17	0.16062	1	0.42161	1	0.39836	1	0.39341	1	0.86688	1	0.81157	1	0.47916	1	0.97971	1
del_17p13.1	42 (75%)	14	0.067769	1	0.055359	1	0.058059	1	0.42502	1	0.13192	1	0.18226	1	0.062499	1	0.12269	1
del_17q21.32	19 (34%)	37	0.86995	1	0.76316	1	0.1747	1	0.066319	1	0.22337	1	0.2089	1	0.18637	1	0.29729	1
del_18q22.2	26 (46%)	30	0.13408	1	0.34185	1	0.50506	1	0.36186	1	0.02239	1	0.079469	1	0.089569	1	0.23094	1
del_19p13.3	47 (84%)	9	0.14152	1	0.02005	1	0.098069	1	0.38043	1	0.01484	1	0.084939	1	0.0085599	1	0.15987	1
del_19q13.33	17 (30%)	39	0.03813	1	0.0089599	1	0.00063999	0.316	0.03577	1	0.22245	1	0.03791	1	0.55775	1	0.01616	1
del_20p12.1	9 (16%)	47	1	1	0.69914	1	0.38893	1	0.52963	1	0.22097	1	0.33949	1	0.31789	1	0.59508	1
del_22q13.31	40 (71%)	16	0.5842	1	0.40774	1	0.89181	1	0.45632	1	0.57634	1	0.3507	1	0.48484	1	0.72735	1
del_xp21.1	18 (32%)	38	0.60018	1	0.42138	1	0.82107	1	0.87026	1	0.36109	1	1	1	0.78093	1	0.65604	1
del_xq25	23 (41%)	33	0.55408	1	0.31077	1	0.11206	1	0.89931	1	0.73139	1	0.56639	1	0.56619	1	0.50594	1