Broad GDAC Analyses Status
analyses__2014_10_17__esca Run for Tumor Type: ESCA

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
ESCA185151184321850125018400

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_AnalysisFeatures10000
2TP-Aggregate_Gene_Status00010
3TP-Aggregate_Molecular_Subtype_Clusters00010
4TP-Append_CustomClinical00010
5TP-CoMut1.510000
6TP-CoMut2.010000
7TP-CoMut2CV10000
8TP-CoMutCV10000
9TP-CopyNumber_Clustering_CNMF00010
10TP-CopyNumber_Clustering_CNMF_thresholded00010
11TP-CopyNumber_Gistic200010
12TP-CopyNumber_Gistic2_Postprocess_Focal00010
13TP-CopyNumberLowPass_Gistic200010
14TP-Correlate_Clinical_vs_CopyNumber_Arm00010
15TP-Correlate_Clinical_vs_CopyNumber_Focal00010
16TP-Correlate_Clinical_vs_Methylation00010
17TP-Correlate_Clinical_vs_miR10000
18TP-Correlate_Clinical_vs_miRseq00010
19TP-Correlate_Clinical_vs_Molecular_Subtypes00010
20TP-Correlate_Clinical_vs_mRNA10000
21TP-Correlate_Clinical_vs_mRNAseq00010
22TP-Correlate_Clinical_vs_Mutation10000
23TP-Correlate_Clinical_vs_MutationRate10000
24TP-Correlate_Clinical_vs_RPPA10000
25TP-Correlate_CopyNumber_vs_miR10000
26TP-Correlate_CopyNumber_vs_mRNA10000
27TP-Correlate_CopyNumber_vs_mRNAseq00010
28TP-Correlate_Methylation_vs_mRNA00010
29TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
30TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
31TP-Correlate_molecularSubtype_vs_Mutation10000
32TP-GenerateStickFigures1.510000
33TP-GenerateStickFigures2.010000
34TP-GenerateStickFigures2CV10000
35TP-GenerateStickFiguresCV10000
36TP-LegoPlotter1.510000
37TP-LegoPlotter2.010000
38TP-LegoPlotter2CV10000
39TP-LegoPlotterCV10000
40TP-Methylation_Clustering_CNMF00010
41TP-miR_Clustering_CNMF10000
42TP-miR_Clustering_Consensus_Plus10000
43TP-miR_FindDirectTargets10000
44TP-miRseq_Clustering_CNMF00010
45TP-miRseq_Clustering_Consensus_Plus00010
46TP-miRseq_Mature_Clustering_CNMF00010
47TP-miRseq_Mature_Clustering_Consensus_Plus00010
48TP-mRNA_Clustering_CNMF10000
49TP-mRNA_Clustering_Consensus_Plus10000
50TP-mRNAseq_Clustering_CNMF00010
51TP-mRNAseq_Clustering_Consensus_Plus00010
52TP-Mutation_APOBEC10000
53TP-Mutation_Assessor10000
54TP-Mutation_CHASM10000
55TP-MutSigNozzleReport1.510000
56TP-MutSigNozzleReport2.010000
57TP-MutSigNozzleReport2CV10000
58TP-MutSigNozzleReportCV10000
59TP-MutSigPreprocess1.510000
60TP-MutSigPreprocess2.010000
61TP-MutSigRun1.510000
62TP-MutSigRun2.010000
63TP-MutSigRun2CV10000
64TP-MutSigRunCV10000
65TP-Paradigm_mRNA10000
66TP-Paradigm_mRNA_And_CopyNumber10000
67TP-Paradigm_Prepare_mRNA10000
68TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
69TP-Paradigm_Prepare_RNASeq00010
70TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
71TP-Paradigm_Preprocess_mRNA10000
72TP-ParadigmPreprocess_mRNA10000
73TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
74TP-Paradigm_Preprocess_RNASeq00010
75TP-ParadigmPreprocess_RNASeq00010
76TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
77TP-Paradigm_Report_Preprocess_mRNA10000
78TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
79TP-Paradigm_Report_Preprocess_RNASeq00010
80TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
81TP-Paradigm_RNASeq00010
82TP-Paradigm_RNASeq_And_Copy_Number00010
83TP-Pathway_FindEnrichedGenes10000
84TP-Pathway_Hotnet10000
85TP-Pathway_Paradigm_mRNA10000
86TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
87TP-Pathway_Paradigm_RNASeq00010
88TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
89TP-ProcessCoverageForMutSig1.510000
90TP-ProcessCoverageForMutSig2.010000
91TP-RPPA_Clustering_CNMF10000
92TP-RPPA_Clustering_Consensus_Plus10000
Total5600360

This table generated on Fri Dec 12 16:32:20 2014