Broad GDAC Analyses Status
analyses__2014_10_17__pcpg Run for Tumor Type: PCPG

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
PCPG1791321750179017901790178

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_AnalysisFeatures00010
2TP-Aggregate_Gene_Status00010
3TP-Aggregate_Molecular_Subtype_Clusters00010
4TP-Append_CustomClinical00010
5TP-CoMut1.500010
6TP-CoMut2.000010
7TP-CoMut2CV00010
8TP-CoMutCV00010
9TP-CopyNumber_Clustering_CNMF00010
10TP-CopyNumber_Clustering_CNMF_thresholded00010
11TP-CopyNumber_Gistic200010
12TP-CopyNumber_Gistic2_Postprocess_Focal00010
13TP-CopyNumberLowPass_Gistic210000
14TP-Correlate_Clinical_vs_CopyNumber_Arm00010
15TP-Correlate_Clinical_vs_CopyNumber_Focal00010
16TP-Correlate_Clinical_vs_Methylation00010
17TP-Correlate_Clinical_vs_miR10000
18TP-Correlate_Clinical_vs_miRseq00010
19TP-Correlate_Clinical_vs_Molecular_Subtypes00010
20TP-Correlate_Clinical_vs_mRNA10000
21TP-Correlate_Clinical_vs_mRNAseq00010
22TP-Correlate_Clinical_vs_Mutation00010
23TP-Correlate_Clinical_vs_MutationRate00010
24TP-Correlate_Clinical_vs_RPPA10000
25TP-Correlate_CopyNumber_vs_miR10000
26TP-Correlate_CopyNumber_vs_mRNA10000
27TP-Correlate_CopyNumber_vs_mRNAseq00010
28TP-Correlate_Methylation_vs_mRNA00010
29TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
30TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
31TP-Correlate_molecularSubtype_vs_Mutation00010
32TP-GenerateStickFigures1.500010
33TP-GenerateStickFigures2.000010
34TP-GenerateStickFigures2CV00010
35TP-GenerateStickFiguresCV00010
36TP-LegoPlotter1.500010
37TP-LegoPlotter2.000010
38TP-LegoPlotter2CV00010
39TP-LegoPlotterCV00010
40TP-Methylation_Clustering_CNMF00010
41TP-miR_Clustering_CNMF10000
42TP-miR_Clustering_Consensus_Plus10000
43TP-miR_FindDirectTargets10000
44TP-miRseq_Clustering_CNMF00010
45TP-miRseq_Clustering_Consensus_Plus00010
46TP-miRseq_Mature_Clustering_CNMF00010
47TP-miRseq_Mature_Clustering_Consensus_Plus00010
48TP-mRNA_Clustering_CNMF10000
49TP-mRNA_Clustering_Consensus_Plus10000
50TP-mRNAseq_Clustering_CNMF00010
51TP-mRNAseq_Clustering_Consensus_Plus00010
52TP-Mutation_APOBEC00010
53TP-Mutation_Assessor00010
54TP-Mutation_CHASM00010
55TP-MutSigNozzleReport1.500010
56TP-MutSigNozzleReport2.000010
57TP-MutSigNozzleReport2CV00010
58TP-MutSigNozzleReportCV00010
59TP-MutSigPreprocess1.500010
60TP-MutSigPreprocess2.000010
61TP-MutSigRun1.500010
62TP-MutSigRun2.000010
63TP-MutSigRun2CV00010
64TP-MutSigRunCV00010
65TP-Paradigm_mRNA10000
66TP-Paradigm_mRNA_And_CopyNumber10000
67TP-Paradigm_Prepare_mRNA10000
68TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
69TP-Paradigm_Prepare_RNASeq00010
70TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
71TP-Paradigm_Preprocess_mRNA10000
72TP-ParadigmPreprocess_mRNA10000
73TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
74TP-Paradigm_Preprocess_RNASeq00010
75TP-ParadigmPreprocess_RNASeq00010
76TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
77TP-Paradigm_Report_Preprocess_mRNA10000
78TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
79TP-Paradigm_Report_Preprocess_RNASeq00010
80TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
81TP-Paradigm_RNASeq00010
82TP-Paradigm_RNASeq_And_Copy_Number00010
83TP-Pathway_FindEnrichedGenes10000
84TP-Pathway_Hotnet00001
85TP-Pathway_Paradigm_mRNA10000
86TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
87TP-Pathway_Paradigm_RNASeq00010
88TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
89TP-ProcessCoverageForMutSig1.500010
90TP-ProcessCoverageForMutSig2.000010
91TP-RPPA_Clustering_CNMF10000
92TP-RPPA_Clustering_Consensus_Plus10000
Total2500661

This table generated on Fri Dec 12 16:32:23 2014