Broad GDAC Analyses Status
analyses__2014_10_17__skcm Run for Tumor Type: SKCM

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
SKCM47042746911845804670448204343

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TM-Aggregate_AnalysisFeatures00010
2TM-Aggregate_Gene_Status00010
3TM-Aggregate_Molecular_Subtype_Clusters00010
4TM-Append_CustomClinical00010
5TM-CoMut1.500010
6TM-CoMut2.000010
7TM-CoMut2CV00010
8TM-CoMutCV00010
9TM-CopyNumber_Clustering_CNMF00010
10TM-CopyNumber_Clustering_CNMF_thresholded00010
11TM-CopyNumber_Gistic200010
12TM-CopyNumber_Gistic2_Postprocess_Focal00010
13TM-CopyNumberLowPass_Gistic200010
14TM-Correlate_Clinical_vs_CopyNumber_Arm00010
15TM-Correlate_Clinical_vs_CopyNumber_Focal00010
16TM-Correlate_Clinical_vs_Methylation00010
17TM-Correlate_Clinical_vs_miR10000
18TM-Correlate_Clinical_vs_miRseq00010
19TM-Correlate_Clinical_vs_Molecular_Subtypes00010
20TM-Correlate_Clinical_vs_mRNA10000
21TM-Correlate_Clinical_vs_mRNAseq00010
22TM-Correlate_Clinical_vs_Mutation00010
23TM-Correlate_Clinical_vs_MutationRate00010
24TM-Correlate_Clinical_vs_RPPA00010
25TM-Correlate_CopyNumber_vs_miR10000
26TM-Correlate_CopyNumber_vs_mRNA10000
27TM-Correlate_CopyNumber_vs_mRNAseq00010
28TM-Correlate_Methylation_vs_mRNA00010
29TM-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
30TM-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
31TM-Correlate_molecularSubtype_vs_Mutation00010
32TM-GenerateStickFigures1.500010
33TM-GenerateStickFigures2.000010
34TM-GenerateStickFigures2CV00010
35TM-GenerateStickFiguresCV00010
36TM-LegoPlotter1.500010
37TM-LegoPlotter2.000010
38TM-LegoPlotter2CV00010
39TM-LegoPlotterCV00010
40TM-Methylation_Clustering_CNMF00010
41TM-miR_Clustering_CNMF10000
42TM-miR_Clustering_Consensus_Plus10000
43TM-miR_FindDirectTargets10000
44TM-miRseq_Clustering_CNMF00010
45TM-miRseq_Clustering_Consensus_Plus00010
46TM-miRseq_Mature_Clustering_CNMF00010
47TM-miRseq_Mature_Clustering_Consensus_Plus00010
48TM-mRNA_Clustering_CNMF10000
49TM-mRNA_Clustering_Consensus_Plus10000
50TM-mRNAseq_Clustering_CNMF00010
51TM-mRNAseq_Clustering_Consensus_Plus00010
52TM-Mutation_APOBEC00010
53TM-Mutation_Assessor00010
54TM-Mutation_CHASM00010
55TM-MutSigNozzleReport1.500010
56TM-MutSigNozzleReport2.000010
57TM-MutSigNozzleReport2CV00010
58TM-MutSigNozzleReportCV00010
59TM-MutSigPreprocess1.500010
60TM-MutSigPreprocess2.000010
61TM-MutSigRun1.500010
62TM-MutSigRun2.000010
63TM-MutSigRun2CV00010
64TM-MutSigRunCV00010
65TM-Paradigm_mRNA10000
66TM-Paradigm_mRNA_And_CopyNumber10000
67TM-Paradigm_Prepare_mRNA10000
68TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
69TM-Paradigm_Prepare_RNASeq00010
70TM-Paradigm_Prepare_RNASeq_And_Copy_Number00010
71TM-Paradigm_Preprocess_mRNA10000
72TM-ParadigmPreprocess_mRNA10000
73TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
74TM-Paradigm_Preprocess_RNASeq00010
75TM-ParadigmPreprocess_RNASeq00010
76TM-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
77TM-Paradigm_Report_Preprocess_mRNA10000
78TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
79TM-Paradigm_Report_Preprocess_RNASeq00010
80TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
81TM-Paradigm_RNASeq00010
82TM-Paradigm_RNASeq_And_Copy_Number00010
83TM-Pathway_FindEnrichedGenes10000
84TM-Pathway_Hotnet00001
85TM-Pathway_Paradigm_mRNA10000
86TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
87TM-Pathway_Paradigm_RNASeq00010
88TM-Pathway_Paradigm_RNASeq_And_Copy_Number00010
89TM-ProcessCoverageForMutSig1.500010
90TM-ProcessCoverageForMutSig2.000010
91TM-RPPA_Clustering_CNMF00010
92TM-RPPA_Clustering_Consensus_Plus00010
Total2100701

This table generated on Fri Dec 12 16:32:24 2014