Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 119 genes and 10 molecular subtypes across 62 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 119 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
ZFPM1 24 (39%) 38 0.801
(1.00) 		0.816
(1.00) 		0.716
(1.00) 		0.872
(1.00) 		0.375
(1.00) 		0.745
(1.00) 		0.822
(1.00) 		0.923
(1.00) 		0.382
(1.00) 		0.742
(1.00)
LACTB 19 (31%) 43 0.436
(1.00) 		0.691
(1.00) 		0.66
(1.00) 		0.566
(1.00) 		1
(1.00) 		0.316
(1.00) 		0.378
(1.00) 		0.752
(1.00) 		0.32
(1.00) 		0.178
(1.00)
CCDC102A 17 (27%) 45 0.019
(1.00) 		0.936
(1.00) 		0.88
(1.00) 		0.507
(1.00) 		0.975
(1.00) 		0.826
(1.00) 		0.497
(1.00) 		0.469
(1.00) 		0.805
(1.00) 		0.507
(1.00)
ZNF517 13 (21%) 49 0.166
(1.00) 		0.98
(1.00) 		0.82
(1.00) 		0.951
(1.00) 		0.173
(1.00) 		0.698
(1.00) 		0.726
(1.00) 		0.773
(1.00)
MAL2 11 (18%) 51 0.499
(1.00) 		0.313
(1.00) 		0.209
(1.00) 		1
(1.00) 		0.253
(1.00) 		0.509
(1.00) 		0.218
(1.00) 		0.268
(1.00) 		1
(1.00) 		0.867
(1.00)
CLDN23 10 (16%) 52 0.572
(1.00) 		0.249
(1.00) 		1
(1.00) 		0.349
(1.00) 		0.0297
(1.00) 		0.211
(1.00) 		0.0984
(1.00) 		0.182
(1.00) 		0.416
(1.00) 		0.542
(1.00)
TOR3A 12 (19%) 50 0.61
(1.00) 		0.0136
(1.00) 		0.138
(1.00) 		0.315
(1.00) 		0.679
(1.00) 		0.005
(1.00) 		1
(1.00) 		0.844
(1.00) 		0.912
(1.00) 		0.808
(1.00)
USP42 15 (24%) 47 0.549
(1.00) 		0.0469
(1.00) 		1
(1.00) 		0.466
(1.00) 		1
(1.00) 		0.96
(1.00) 		0.457
(1.00) 		0.873
(1.00) 		0.911
(1.00) 		0.903
(1.00)
TP53 12 (19%) 50 0.133
(1.00) 		0.793
(1.00) 		0.068
(1.00) 		0.466
(1.00) 		0.0201
(1.00) 		0.667
(1.00) 		0.0158
(1.00) 		0.672
(1.00) 		0.00614
(1.00) 		0.178
(1.00)
APOE 7 (11%) 55 1
(1.00) 		0.593
(1.00) 		0.589
(1.00) 		0.384
(1.00) 		0.0602
(1.00) 		0.401
(1.00) 		0.195
(1.00) 		0.791
(1.00) 		0.416
(1.00) 		1
(1.00)
ZAR1 11 (18%) 51 0.645
(1.00) 		0.67
(1.00) 		0.209
(1.00) 		0.793
(1.00) 		0.624
(1.00) 		0.869
(1.00) 		0.716
(1.00) 		0.972
(1.00) 		1
(1.00) 		0.603
(1.00)
ASPDH 8 (13%) 54 0.301
(1.00) 		0.688
(1.00) 		0.717
(1.00) 		0.314
(1.00) 		0.0236
(1.00) 		0.398
(1.00) 		0.474
(1.00) 		0.031
(1.00) 		0.213
(1.00) 		0.081
(1.00)
KCNK17 9 (15%) 53 0.201
(1.00) 		0.0391
(1.00) 		0.179
(1.00) 		0.439
(1.00) 		0.104
(1.00) 		0.00942
(1.00) 		0.891
(1.00) 		0.548
(1.00) 		0.717
(1.00) 		0.444
(1.00)
LZTR1 6 (10%) 56 0.0517
(1.00) 		0.851
(1.00) 		0.0896
(1.00) 		0.12
(1.00) 		0.401
(1.00) 		0.0143
(1.00) 		1
(1.00) 		0.453
(1.00)
ERCC2 10 (16%) 52 1
(1.00) 		0.232
(1.00) 		0.218
(1.00) 		0.233
(1.00) 		0.482
(1.00) 		0.172
(1.00) 		0.597
(1.00) 		0.268
(1.00) 		0.337
(1.00) 		0.207
(1.00)
RINL 8 (13%) 54 0.339
(1.00) 		0.678
(1.00) 		0.528
(1.00) 		0.579
(1.00) 		0.464
(1.00) 		0.273
(1.00) 		0.76
(1.00) 		0.169
(1.00) 		0.345
(1.00) 		0.748
(1.00)
SYT8 8 (13%) 54 0.443
(1.00) 		0.441
(1.00) 		1
(1.00) 		1
(1.00) 		0.0415
(1.00) 		0.177
(1.00) 		1
(1.00) 		0.185
(1.00) 		0.751
(1.00) 		0.496
(1.00)
LRIG1 16 (26%) 46 0.542
(1.00) 		0.96
(1.00) 		0.211
(1.00) 		1
(1.00) 		0.865
(1.00) 		0.611
(1.00) 		0.362
(1.00) 		0.435
(1.00) 		0.577
(1.00) 		0.902
(1.00)
C1ORF106 9 (15%) 53 0.843
(1.00) 		0.471
(1.00) 		0.164
(1.00) 		0.0475
(1.00) 		0.34
(1.00) 		0.761
(1.00) 		0.474
(1.00) 		0.693
(1.00) 		0.053
(1.00) 		1
(1.00)
GPRIN2 8 (13%) 54 0.867
(1.00) 		0.381
(1.00) 		0.21
(1.00) 		0.693
(1.00) 		0.682
(1.00) 		0.402
(1.00) 		0.578
(1.00) 		0.754
(1.00) 		0.594
(1.00) 		0.183
(1.00)
CTNNB1 7 (11%) 55 0.731
(1.00) 		0.185
(1.00) 		0.211
(1.00) 		0.395
(1.00) 		0.0176
(1.00) 		0.0235
(1.00) 		0.00079
(0.767) 		0.175
(1.00) 		0.125
(1.00) 		0.713
(1.00)
C16ORF3 5 (8%) 57 0.858
(1.00) 		0.00076
(0.739) 		0.59
(1.00) 		0.788
(1.00) 		0.8
(1.00) 		0.815
(1.00) 		0.582
(1.00) 		1
(1.00) 		0.726
(1.00) 		0.835
(1.00)
CCDC105 6 (10%) 56 1
(1.00) 		0.0109
(1.00) 		0.588
(1.00) 		0.676
(1.00) 		0.938
(1.00) 		0.795
(1.00) 		1
(1.00) 		0.0535
(1.00) 		0.217
(1.00) 		0.208
(1.00)
RGS9BP 8 (13%) 54 0.727
(1.00) 		0.632
(1.00) 		1
(1.00) 		0.128
(1.00) 		1
(1.00) 		0.934
(1.00) 		0.218
(1.00) 		0.962
(1.00) 		0.343
(1.00) 		0.754
(1.00)
HHIPL1 6 (10%) 56 0.276
(1.00) 		0.434
(1.00) 		0.631
(1.00) 		0.513
(1.00) 		0.207
(1.00) 		0.422
(1.00) 		0.201
(1.00) 		0.333
(1.00)
C10ORF95 6 (10%) 56 0.199
(1.00) 		0.378
(1.00) 		0.513
(1.00) 		1
(1.00) 		0.485
(1.00) 		0.356
(1.00) 		1
(1.00) 		1
(1.00)
TSC22D2 8 (13%) 54 0.947
(1.00) 		0.541
(1.00) 		0.767
(1.00) 		0.954
(1.00) 		0.78
(1.00) 		0.817
(1.00) 		0.761
(1.00) 		0.429
(1.00) 		0.35
(1.00) 		1
(1.00)
NOXA1 5 (8%) 57 0.145
(1.00) 		0.514
(1.00) 		0.222
(1.00) 		0.442
(1.00) 		0.293
(1.00) 		0.353
(1.00) 		0.252
(1.00) 		0.722
(1.00)
THEM4 5 (8%) 57 0.281
(1.00) 		0.769
(1.00) 		0.44
(1.00) 		0.876
(1.00) 		0.179
(1.00) 		0.107
(1.00) 		0.232
(1.00) 		0.261
(1.00)
ATXN1 10 (16%) 52 0.556
(1.00) 		0.139
(1.00) 		0.887
(1.00) 		0.915
(1.00) 		0.236
(1.00) 		0.658
(1.00) 		0.285
(1.00) 		0.871
(1.00) 		0.235
(1.00) 		0.315
(1.00)
PLIN5 5 (8%) 57 0.499
(1.00) 		0.696
(1.00) 		0.454
(1.00) 		0.385
(1.00) 		0.8
(1.00) 		0.667
(1.00) 		0.268
(1.00) 		0.265
(1.00) 		0.511
(1.00) 		0.0465
(1.00)
OPRD1 12 (19%) 50 0.968
(1.00) 		0.434
(1.00) 		0.28
(1.00) 		0.478
(1.00) 		0.799
(1.00) 		0.96
(1.00) 		0.3
(1.00) 		0.614
(1.00) 		1
(1.00) 		0.51
(1.00)
KRTAP4-5 5 (8%) 57 0.632
(1.00) 		0.286
(1.00) 		0.909
(1.00) 		0.876
(1.00) 		1
(1.00) 		0.843
(1.00) 		0.435
(1.00) 		1
(1.00)
C19ORF10 7 (11%) 55 0.782
(1.00) 		0.423
(1.00) 		0.887
(1.00) 		0.39
(1.00) 		0.241
(1.00) 		0.124
(1.00) 		0.551
(1.00) 		0.862
(1.00) 		0.638
(1.00) 		0.715
(1.00)
AATK 6 (10%) 56 0.139
(1.00) 		0.331
(1.00) 		0.441
(1.00) 		0.356
(1.00) 		1
(1.00) 		0.544
(1.00) 		1
(1.00) 		0.62
(1.00)
SARM1 6 (10%) 56 0.208
(1.00) 		0.422
(1.00) 		0.886
(1.00) 		0.694
(1.00) 		0.174
(1.00) 		0.114
(1.00) 		0.266
(1.00) 		0.836
(1.00) 		0.512
(1.00) 		0.0793
(1.00)
TRIOBP 10 (16%) 52 0.62
(1.00) 		0.229
(1.00) 		0.453
(1.00) 		0.128
(1.00) 		1
(1.00) 		0.112
(1.00) 		0.713
(1.00) 		0.871
(1.00) 		1
(1.00) 		0.774
(1.00)
ZNF598 12 (19%) 50 0.111
(1.00) 		0.316
(1.00) 		0.427
(1.00) 		0.75
(1.00) 		0.489
(1.00) 		0.953
(1.00) 		1
(1.00) 		0.226
(1.00) 		0.901
(1.00) 		1
(1.00)
WDR34 5 (8%) 57 0.633
(1.00) 		0.831
(1.00) 		0.863
(1.00) 		0.815
(1.00) 		0.842
(1.00) 		0.551
(1.00) 		0.842
(1.00) 		0.336
(1.00)
ZNF628 7 (11%) 55 0.21
(1.00) 		0.927
(1.00) 		0.591
(1.00) 		0.675
(1.00) 		0.313
(1.00) 		0.117
(1.00) 		0.0947
(1.00) 		0.503
(1.00) 		0.286
(1.00) 		0.545
(1.00)
BTBD11 6 (10%) 56 1
(1.00) 		0.315
(1.00) 		0.484
(1.00) 		1
(1.00) 		0.488
(1.00) 		0.183
(1.00) 		0.726
(1.00) 		0.33
(1.00)
IRX3 5 (8%) 57 0.141
(1.00) 		0.707
(1.00) 		0.522
(1.00) 		0.12
(1.00) 		0.179
(1.00) 		0.779
(1.00) 		0.231
(1.00) 		0.453
(1.00)
FPGS 5 (8%) 57 1
(1.00) 		1
(1.00) 		0.452
(1.00) 		0.351
(1.00) 		0.665
(1.00) 		0.601
(1.00) 		0.0553
(1.00) 		0.627
(1.00) 		0.822
(1.00) 		0.62
(1.00)
MEN1 5 (8%) 57 0.418
(1.00) 		0.0487
(1.00) 		0.0131
(1.00) 		0.00683
(1.00) 		0.206
(1.00) 		0.0426
(1.00) 		0.136
(1.00) 		0.201
(1.00)
BHLHE22 5 (8%) 57 0.425
(1.00) 		0.0719
(1.00) 		0.889
(1.00) 		0.916
(1.00) 		0.12
(1.00) 		0.817
(1.00) 		0.582
(1.00) 		0.836
(1.00) 		0.727
(1.00) 		0.836
(1.00)
DMKN 3 (5%) 59 1
(1.00) 		0.325
(1.00) 		0.617
(1.00) 		0.441
(1.00) 		0.00622
(1.00) 		0.568
(1.00) 		0.254
(1.00) 		1
(1.00)
OBSCN 18 (29%) 44 0.31
(1.00) 		0.52
(1.00) 		1
(1.00) 		0.545
(1.00) 		0.672
(1.00) 		0.807
(1.00) 		0.148
(1.00) 		0.498
(1.00) 		1
(1.00) 		0.386
(1.00)
PANK2 5 (8%) 57 0.628
(1.00) 		0.431
(1.00) 		0.451
(1.00) 		0.348
(1.00) 		0.115
(1.00) 		0.052
(1.00) 		0.429
(1.00) 		0.35
(1.00) 		1
(1.00) 		0.255
(1.00)
RREB1 5 (8%) 57 0.727
(1.00) 		0.851
(1.00) 		0.619
(1.00) 		1
(1.00) 		0.528
(1.00) 		0.547
(1.00) 		0.174
(1.00) 		0.352
(1.00)
RNF149 4 (6%) 58 0.339
(1.00) 		0.0367
(1.00) 		0.766
(1.00) 		0.954
(1.00) 		0.437
(1.00) 		0.6
(1.00) 		0.318
(1.00) 		0.259
(1.00) 		0.663
(1.00) 		0.174
(1.00)
GLTPD2 6 (10%) 56 0.877
(1.00) 		0.842
(1.00) 		0.829
(1.00) 		0.399
(1.00) 		0.551
(1.00) 		0.531
(1.00) 		0.873
(1.00) 		0.132
(1.00)
SNED1 5 (8%) 57 0.629
(1.00) 		0.314
(1.00) 		0.4
(1.00) 		0.666
(1.00) 		0.0943
(1.00) 		0.662
(1.00) 		1
(1.00) 		0.544
(1.00)
TPO 12 (19%) 50 0.262
(1.00) 		0.303
(1.00) 		0.887
(1.00) 		0.697
(1.00) 		0.174
(1.00) 		0.125
(1.00) 		0.0981
(1.00) 		0.341
(1.00) 		1
(1.00) 		0.17
(1.00)
PTPLA 4 (6%) 58 0.418
(1.00) 		0.325
(1.00) 		0.336
(1.00) 		0.443
(1.00) 		0.776
(1.00) 		1
(1.00) 		0.774
(1.00) 		1
(1.00)
PRSS27 3 (5%) 59 1
(1.00) 		0.91
(1.00) 		0.619
(1.00) 		0.0506
(1.00) 		0.131
(1.00) 		1
(1.00) 		0.614
(1.00) 		0.557
(1.00)
CD320 4 (6%) 58 1
(1.00) 		0.853
(1.00) 		0.738
(1.00) 		0.659
(1.00) 		0.4
(1.00) 		0.225
(1.00) 		0.232
(1.00) 		0.261
(1.00)
SEMA5B 8 (13%) 54 0.342
(1.00) 		0.269
(1.00) 		0.624
(1.00) 		0.174
(1.00) 		0.397
(1.00) 		0.215
(1.00) 		0.65
(1.00) 		0.299
(1.00) 		0.362
(1.00) 		0.408
(1.00)
CCDC150 4 (6%) 58 0.18
(1.00) 		0.851
(1.00) 		1
(1.00) 		0.601
(1.00) 		0.238
(1.00) 		0.117
(1.00) 		0.4
(1.00) 		0.209
(1.00) 		1
(1.00) 		0.454
(1.00)
TAF5 4 (6%) 58 1
(1.00) 		0.769
(1.00) 		1
(1.00) 		0.953
(1.00) 		1
(1.00) 		0.877
(1.00) 		0.00926
(1.00) 		0.115
(1.00) 		0.0555
(1.00) 		0.0141
(1.00)
GARS 19 (31%) 43 0.0754
(1.00) 		0.0922
(1.00) 		0.381
(1.00) 		0.335
(1.00) 		0.341
(1.00) 		0.102
(1.00) 		0.118
(1.00) 		0.402
(1.00) 		0.214
(1.00) 		0.399
(1.00)
MUC5B 22 (35%) 40 1
(1.00) 		0.631
(1.00) 		0.53
(1.00) 		0.809
(1.00) 		0.733
(1.00) 		0.67
(1.00) 		0.715
(1.00) 		0.617
(1.00) 		1
(1.00) 		0.531
(1.00)
KIAA1984 4 (6%) 58 0.418
(1.00) 		0.709
(1.00) 		0.451
(1.00) 		0.505
(1.00) 		0.127
(1.00) 		0.0493
(1.00) 		0.0313
(1.00) 		0.581
(1.00) 		0.665
(1.00) 		0.793
(1.00)
SRPX 3 (5%) 59 0.753
(1.00) 		0.112
(1.00) 		0.618
(1.00) 		1
(1.00) 		0.776
(1.00) 		0.718
(1.00) 		1
(1.00) 		0.401
(1.00)
TNIP2 5 (8%) 57 0.629
(1.00) 		0.708
(1.00) 		0.739
(1.00) 		0.876
(1.00) 		1
(1.00) 		0.414
(1.00) 		1
(1.00) 		0.453
(1.00)
IDUA 8 (13%) 54 0.381
(1.00) 		0.854
(1.00) 		0.528
(1.00) 		0.794
(1.00) 		0.508
(1.00) 		0.546
(1.00) 		0.202
(1.00) 		0.432
(1.00) 		0.457
(1.00) 		0.645
(1.00)
RNF39 5 (8%) 57 0.726
(1.00) 		0.38
(1.00) 		0.253
(1.00) 		0.794
(1.00) 		0.176
(1.00) 		0.266
(1.00) 		0.158
(1.00) 		0.698
(1.00) 		0.239
(1.00) 		0.686
(1.00)
PABPC1 4 (6%) 58 0.417
(1.00)
SCRT1 3 (5%) 59 1
(1.00) 		0.43
(1.00) 		0.474
(1.00) 		0.616
(1.00) 		0.426
(1.00) 		0.795
(1.00) 		0.468
(1.00) 		1
(1.00)
MAP1S 5 (8%) 57 0.158
(1.00) 		0.277
(1.00) 		0.21
(1.00) 		0.42
(1.00) 		0.401
(1.00) 		1
(1.00) 		1
(1.00) 		0.835
(1.00) 		0.42
(1.00) 		0.837
(1.00)
NF1 7 (11%) 55 0.251
(1.00) 		0.903
(1.00) 		0.889
(1.00) 		0.392
(1.00) 		0.359
(1.00) 		0.192
(1.00) 		0.282
(1.00) 		0.885
(1.00) 		1
(1.00) 		0.0966
(1.00)
AKAP2 4 (6%) 58 0.106
(1.00) 		0.435
(1.00) 		0.454
(1.00) 		0.676
(1.00) 		0.74
(1.00) 		0.172
(1.00) 		0.527
(1.00) 		0.446
(1.00) 		0.824
(1.00) 		0.349
(1.00)
NOTCH2 5 (8%) 57 0.279
(1.00) 		0.895
(1.00) 		0.524
(1.00) 		0.118
(1.00) 		0.031
(1.00) 		0.318
(1.00) 		0.665
(1.00) 		0.795
(1.00)
FANK1 4 (6%) 58 1
(1.00) 		0.323
(1.00) 		0.857
(1.00) 		0.289
(1.00) 		0.777
(1.00) 		0.235
(1.00) 		0.774
(1.00) 		0.254
(1.00)
NEFH 6 (10%) 56 0.0523
(1.00) 		0.175
(1.00) 		0.116
(1.00) 		0.0509
(1.00) 		0.399
(1.00) 		0.21
(1.00) 		0.663
(1.00) 		0.452
(1.00)
NPTX1 3 (5%) 59 0.638
(1.00) 		1
(1.00) 		1
(1.00) 		0.817
(1.00) 		0.581
(1.00) 		0.794
(1.00) 		0.352
(1.00) 		0.558
(1.00)
KBTBD13 9 (15%) 53 0.457
(1.00) 		0.117
(1.00) 		1
(1.00) 		0.791
(1.00) 		0.686
(1.00) 		0.115
(1.00) 		1
(1.00) 		0.329
(1.00) 		1
(1.00) 		0.605
(1.00)
RASIP1 6 (10%) 56 0.361
(1.00) 		0.35
(1.00) 		0.0403
(1.00) 		0.188
(1.00) 		0.0558
(1.00) 		0.7
(1.00) 		0.417
(1.00) 		0.712
(1.00)
AR 4 (6%) 58 0.416
(1.00) 		0.516
(1.00) 		1
(1.00) 		0.954
(1.00) 		0.474
(1.00) 		0.447
(1.00) 		0.43
(1.00) 		1
(1.00) 		0.254
(1.00) 		1
(1.00)
KNDC1 9 (15%) 53 0.353
(1.00) 		0.0666
(1.00) 		0.452
(1.00) 		0.553
(1.00) 		0.0255
(1.00) 		0.328
(1.00) 		0.421
(1.00) 		0.365
(1.00) 		0.187
(1.00) 		0.385
(1.00)
SEZ6L2 8 (13%) 54 0.381
(1.00) 		0.667
(1.00) 		0.451
(1.00) 		0.791
(1.00) 		0.829
(1.00) 		1
(1.00) 		0.465
(1.00) 		0.628
(1.00) 		1
(1.00) 		0.852
(1.00)
VARS 6 (10%) 56 1
(1.00) 		0.422
(1.00) 		0.453
(1.00) 		0.386
(1.00) 		0.216
(1.00) 		0.066
(1.00) 		0.646
(1.00) 		0.862
(1.00) 		0.75
(1.00) 		1
(1.00)
IER5 3 (5%) 59 0.2
(1.00)
NMU 5 (8%) 57 0.915
(1.00) 		1
(1.00) 		0.0691
(1.00) 		0.613
(1.00) 		1
(1.00) 		0.546
(1.00) 		0.823
(1.00) 		0.621
(1.00)
TMEM189 3 (5%) 59 0.2
(1.00)
ADAD2 4 (6%) 58 0.419
(1.00) 		0.575
(1.00) 		0.738
(1.00) 		0.173
(1.00) 		0.00966
(1.00) 		0.512
(1.00) 		0.0568
(1.00) 		0.352
(1.00)
PLEC 13 (21%) 49 0.428
(1.00) 		0.671
(1.00) 		0.197
(1.00) 		0.0486
(1.00) 		0.204
(1.00) 		0.719
(1.00) 		0.596
(1.00) 		0.633
(1.00) 		0.14
(1.00) 		0.625
(1.00)
RGMB 6 (10%) 56 0.651
(1.00)
CLIC6 5 (8%) 57 0.631
(1.00) 		1
(1.00) 		0.665
(1.00) 		0.118
(1.00) 		0.178
(1.00) 		0.583
(1.00) 		0.294
(1.00) 		1
(1.00)
ZNF814 3 (5%) 59 1
(1.00)
DSPP 9 (15%) 53 0.61
(1.00) 		0.0597
(1.00) 		0.888
(1.00) 		0.693
(1.00) 		1
(1.00) 		0.484
(1.00) 		0.446
(1.00) 		0.54
(1.00) 		0.901
(1.00) 		1
(1.00)
AMDHD1 10 (16%) 52 0.655
(1.00) 		0.758
(1.00) 		1
(1.00) 		0.351
(1.00) 		0.588
(1.00) 		0.138
(1.00) 		0.173
(1.00) 		0.852
(1.00) 		0.901
(1.00) 		0.683
(1.00)
CRIPAK 10 (16%) 52 0.385
(1.00) 		0.929
(1.00) 		0.887
(1.00) 		0.935
(1.00) 		0.49
(1.00) 		0.687
(1.00) 		0.895
(1.00) 		0.33
(1.00) 		0.477
(1.00) 		0.364
(1.00)
NOM1 6 (10%) 56 1
(1.00) 		0.314
(1.00) 		0.865
(1.00) 		1
(1.00) 		1
(1.00) 		0.788
(1.00) 		0.422
(1.00) 		1
(1.00)
MAP7 3 (5%) 59 1
(1.00) 		0.653
(1.00) 		1
(1.00) 		0.813
(1.00) 		0.581
(1.00) 		0.793
(1.00) 		1
(1.00) 		0.553
(1.00)
PTX4 3 (5%) 59 1
(1.00) 		1
(1.00) 		0.472
(1.00) 		0.195
(1.00) 		0.43
(1.00) 		1
(1.00) 		0.253
(1.00) 		0.255
(1.00)
LRP11 6 (10%) 56 1
(1.00) 		0.0797
(1.00) 		0.8
(1.00) 		0.664
(1.00) 		0.581
(1.00) 		0.936
(1.00) 		0.842
(1.00) 		0.838
(1.00)
PDCD6 3 (5%) 59 0.299
(1.00) 		0.651
(1.00) 		1
(1.00) 		0.641
(1.00) 		1
(1.00) 		1
(1.00)
SHOX2 3 (5%) 59 0.413
(1.00)
UQCRFS1 5 (8%) 57 0.75
(1.00) 		0.587
(1.00) 		1
(1.00) 		0.876
(1.00) 		0.489
(1.00) 		0.202
(1.00) 		0.843
(1.00) 		0.334
(1.00)
CTBP2 3 (5%) 59 0.754
(1.00)
PRKAR1A 6 (10%) 56 0.618
(1.00) 		1
(1.00) 		0.886
(1.00) 		0.793
(1.00) 		0.278
(1.00) 		0.403
(1.00) 		0.105
(1.00) 		0.586
(1.00) 		0.0493
(1.00) 		0.588
(1.00)
JMJD4 3 (5%) 59 1
(1.00)
HSD17B1 4 (6%) 58 0.914
(1.00) 		0.0479
(1.00) 		0.765
(1.00) 		0.508
(1.00) 		0.91
(1.00) 		0.0082
(1.00) 		1
(1.00) 		0.843
(1.00) 		0.549
(1.00) 		0.796
(1.00)
COQ2 5 (8%) 57 0.361
(1.00) 		0.768
(1.00) 		0.438
(1.00) 		0.599
(1.00) 		1
(1.00) 		0.673
(1.00) 		0.547
(1.00) 		0.617
(1.00)
FEZ2 3 (5%) 59 0.467
(1.00) 		0.354
(1.00) 		0.222
(1.00) 		0.814
(1.00) 		0.196
(1.00) 		0.795
(1.00) 		0.776
(1.00) 		0.556
(1.00)
DLEU7 3 (5%) 59 0.528
(1.00)
RNF135 3 (5%) 59 0.756
(1.00)
SPIRE2 3 (5%) 59 0.3
(1.00) 		0.0386
(1.00) 		1
(1.00) 		0.814
(1.00) 		1
(1.00) 		0.795
(1.00) 		1
(1.00) 		1
(1.00)
KRTAP5-5 3 (5%) 59 1
(1.00)
SGK223 3 (5%) 59 0.754
(1.00)
C9ORF66 5 (8%) 57 1
(1.00) 		0.925
(1.00) 		1
(1.00) 		0.512
(1.00) 		0.581
(1.00) 		0.936
(1.00) 		0.35
(1.00) 		0.541
(1.00)
AQP7 3 (5%) 59 0.755
(1.00)
ADAMTS7 4 (6%) 58 0.197
(1.00) 		0.477
(1.00) 		0.0124
(1.00) 		0.35
(1.00) 		0.0905
(1.00) 		0.438
(1.00) 		0.0824
(1.00) 		0.258
(1.00) 		0.124
(1.00) 		0.0387
(1.00)
PCDHB13 5 (8%) 57 0.395
(1.00) 		0.141
(1.00) 		0.127
(1.00) 		0.356
(1.00) 		0.663
(1.00) 		0.0596
(1.00) 		0.436
(1.00) 		0.453
(1.00)
CSGALNACT2 3 (5%) 59 0.161
(1.00) 		0.0388
(1.00) 		0.774
(1.00) 		0.812
(1.00) 		0.583
(1.00) 		0.876
(1.00) 		0.352
(1.00) 		0.401
(1.00)
HLA-A 3 (5%) 59 1
(1.00) 		1
(1.00) 		0.852
(1.00) 		0.194
(1.00) 		1
(1.00) 		0.506
(1.00) 		0.775
(1.00) 		0.254
(1.00)
MTFMT 3 (5%) 59 1
(1.00)
NLRP5 4 (6%) 58 0.914
(1.00) 		0.171
(1.00) 		1
(1.00) 		0.121
(1.00) 		0.778
(1.00) 		0.643
(1.00) 		1
(1.00) 		0.076
(1.00)
KCNJ11 4 (6%) 58 0.0191
(1.00) 		0.709
(1.00) 		0.436
(1.00) 		0.23
(1.00) 		0.126
(1.00) 		0.0534
(1.00) 		0.291
(1.00) 		0.259
(1.00)
'ZFPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ZFPM1 MUTATED 10 8 3 3
ZFPM1 WILD-TYPE 11 12 7 6
'ZFPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ZFPM1 MUTATED 6 4 4 5 2
ZFPM1 WILD-TYPE 7 4 10 8 5
'ZFPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ZFPM1 MUTATED 3 5 2 2
ZFPM1 WILD-TYPE 5 3 4 4
'ZFPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ZFPM1 MUTATED 2 4 1 1 1 1 1 1
ZFPM1 WILD-TYPE 3 2 4 2 2 0 2 1
'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ZFPM1 MUTATED 7 1 7 6
ZFPM1 WILD-TYPE 9 7 7 10
'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ZFPM1 MUTATED 8 6 1 6
ZFPM1 WILD-TYPE 8 10 3 12
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ZFPM1 MUTATED 10 5 6
ZFPM1 WILD-TYPE 16 6 12
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ZFPM1 MUTATED 5 8 2 5 1
ZFPM1 WILD-TYPE 8 10 6 9 1
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ZFPM1 MUTATED 9 7 5
ZFPM1 WILD-TYPE 12 7 14
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ZFPM1 MUTATED 12 7 2
ZFPM1 WILD-TYPE 18 9 6
'LACTB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
LACTB MUTATED 6 5 3 5
LACTB WILD-TYPE 15 15 7 4
'LACTB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
LACTB MUTATED 2 3 5 4 3
LACTB WILD-TYPE 11 5 9 9 4
'LACTB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
LACTB MUTATED 2 2 1 3
LACTB WILD-TYPE 6 6 5 3
'LACTB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
LACTB MUTATED 2 1 2 0 2 0 0 1
LACTB WILD-TYPE 3 5 3 3 1 1 3 1
'LACTB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
LACTB MUTATED 5 2 5 5
LACTB WILD-TYPE 11 6 9 11
'LACTB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
LACTB MUTATED 4 5 3 5
LACTB WILD-TYPE 12 11 1 13
'LACTB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
LACTB MUTATED 6 5 6
LACTB WILD-TYPE 20 6 12
'LACTB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
LACTB MUTATED 4 5 4 4 0
LACTB WILD-TYPE 9 13 4 10 2
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
LACTB MUTATED 8 2 7
LACTB WILD-TYPE 13 12 12
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
LACTB MUTATED 8 4 5
LACTB WILD-TYPE 22 12 3
'CCDC102A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CCDC102A MUTATED 4 8 0 5
CCDC102A WILD-TYPE 17 12 10 4

Figure S1.  Get High-res Image Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC102A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CCDC102A MUTATED 3 2 4 4 3
CCDC102A WILD-TYPE 10 6 10 9 4
'CCDC102A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
CCDC102A MUTATED 2 3 1 1
CCDC102A WILD-TYPE 6 5 5 5
'CCDC102A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
CCDC102A MUTATED 1 1 0 1 1 1 1 1
CCDC102A WILD-TYPE 4 5 5 2 2 0 2 1
'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CCDC102A MUTATED 4 3 4 5
CCDC102A WILD-TYPE 12 5 10 11
'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CCDC102A MUTATED 4 4 1 7
CCDC102A WILD-TYPE 12 12 3 11
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CCDC102A MUTATED 7 2 7
CCDC102A WILD-TYPE 19 9 11
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CCDC102A MUTATED 2 6 4 4 0
CCDC102A WILD-TYPE 11 12 4 10 2
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CCDC102A MUTATED 7 3 6
CCDC102A WILD-TYPE 14 11 13
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CCDC102A MUTATED 7 6 3
CCDC102A WILD-TYPE 23 10 5
'ZNF517 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ZNF517 MUTATED 7 5 0 1
ZNF517 WILD-TYPE 14 15 10 8
'ZNF517 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ZNF517 MUTATED 3 1 2 2 1
ZNF517 WILD-TYPE 10 7 12 11 6
'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ZNF517 MUTATED 4 1 2 2
ZNF517 WILD-TYPE 12 7 12 14
'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ZNF517 MUTATED 3 2 1 3
ZNF517 WILD-TYPE 13 14 3 15
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ZNF517 MUTATED 3 4 2
ZNF517 WILD-TYPE 23 7 16
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ZNF517 MUTATED 1 3 1 4 0
ZNF517 WILD-TYPE 12 15 7 10 2
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ZNF517 MUTATED 4 3 2
ZNF517 WILD-TYPE 17 11 17
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ZNF517 MUTATED 5 2 2
ZNF517 WILD-TYPE 25 14 6
'MAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
MAL2 MUTATED 4 5 2 0
MAL2 WILD-TYPE 17 15 8 9
'MAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
MAL2 MUTATED 3 2 0 2 1
MAL2 WILD-TYPE 10 6 14 11 6
'MAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S41.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
MAL2 MUTATED 2 0 0 2
MAL2 WILD-TYPE 6 8 6 4
'MAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
MAL2 MUTATED 1 1 1 1 0 0 0 0
MAL2 WILD-TYPE 4 5 4 2 3 1 3 2
'MAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
MAL2 MUTATED 3 2 0 3
MAL2 WILD-TYPE 13 6 14 13
'MAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
MAL2 MUTATED 4 1 0 3
MAL2 WILD-TYPE 12 15 4 15
'MAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
MAL2 MUTATED 2 3 3
MAL2 WILD-TYPE 24 8 15
'MAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
MAL2 MUTATED 0 3 1 4 0
MAL2 WILD-TYPE 13 15 7 10 2
'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
MAL2 MUTATED 3 2 3
MAL2 WILD-TYPE 18 12 16
'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'MAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
MAL2 MUTATED 4 3 1
MAL2 WILD-TYPE 26 13 7
'CLDN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S49.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CLDN23 MUTATED 2 5 1 2
CLDN23 WILD-TYPE 19 15 9 7
'CLDN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S50.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CLDN23 MUTATED 1 2 1 3 3
CLDN23 WILD-TYPE 12 6 13 10 4
'CLDN23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
CLDN23 MUTATED 1 1 0 1
CLDN23 WILD-TYPE 7 7 6 5
'CLDN23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
CLDN23 MUTATED 1 0 0 0 1 0 0 1
CLDN23 WILD-TYPE 4 6 5 3 2 1 3 1
'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CLDN23 MUTATED 1 1 1 7
CLDN23 WILD-TYPE 15 7 13 9

Figure S2.  Get High-res Image Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CLDN23 MUTATED 3 1 0 6
CLDN23 WILD-TYPE 13 15 4 12
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CLDN23 MUTATED 2 2 6
CLDN23 WILD-TYPE 24 9 12
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CLDN23 MUTATED 1 4 3 1 1
CLDN23 WILD-TYPE 12 14 5 13 1
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CLDN23 MUTATED 4 1 5
CLDN23 WILD-TYPE 17 13 14
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CLDN23 MUTATED 4 4 2
CLDN23 WILD-TYPE 26 12 6
'TOR3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S59.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TOR3A MUTATED 6 3 1 1
TOR3A WILD-TYPE 15 17 9 8
'TOR3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 1

Table S60.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TOR3A MUTATED 0 0 4 6 1
TOR3A WILD-TYPE 13 8 10 7 6

Figure S3.  Get High-res Image Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TOR3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
TOR3A MUTATED 0 1 3 1
TOR3A WILD-TYPE 8 7 3 5
'TOR3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
TOR3A MUTATED 0 1 2 0 0 1 1 0
TOR3A WILD-TYPE 5 5 3 3 3 0 2 2
'TOR3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TOR3A MUTATED 2 1 4 4
TOR3A WILD-TYPE 14 7 10 12
'TOR3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TOR3A MUTATED 0 3 3 5
TOR3A WILD-TYPE 16 13 1 13

Figure S4.  Get High-res Image Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TOR3A MUTATED 5 2 4
TOR3A WILD-TYPE 21 9 14
'TOR3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TOR3A MUTATED 2 5 2 2 0
TOR3A WILD-TYPE 11 13 6 12 2
'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TOR3A MUTATED 5 2 4
TOR3A WILD-TYPE 16 12 15
'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'TOR3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TOR3A MUTATED 6 4 1
TOR3A WILD-TYPE 24 12 7
'USP42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S69.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
USP42 MUTATED 5 4 2 4
USP42 WILD-TYPE 16 16 8 5
'USP42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 1

Table S70.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
USP42 MUTATED 2 4 0 3 2
USP42 WILD-TYPE 11 4 14 10 5

Figure S5.  Get High-res Image Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
USP42 MUTATED 2 2 1 2
USP42 WILD-TYPE 6 6 5 4
'USP42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
USP42 MUTATED 2 2 0 1 1 1 0 0
USP42 WILD-TYPE 3 4 5 2 2 0 3 2
'USP42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
USP42 MUTATED 3 2 3 3
USP42 WILD-TYPE 13 6 11 13
'USP42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
USP42 MUTATED 3 4 1 3
USP42 WILD-TYPE 13 12 3 15
'USP42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
USP42 MUTATED 6 3 2
USP42 WILD-TYPE 20 8 16
'USP42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
USP42 MUTATED 2 3 2 4 0
USP42 WILD-TYPE 11 15 6 10 2
'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
USP42 MUTATED 5 2 4
USP42 WILD-TYPE 16 12 15
'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'USP42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
USP42 MUTATED 7 3 1
USP42 WILD-TYPE 23 13 7
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S79.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TP53 MUTATED 5 1 3 3
TP53 WILD-TYPE 16 19 7 6
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S80.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TP53 MUTATED 2 3 3 2 1
TP53 WILD-TYPE 11 5 11 11 6
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
TP53 MUTATED 4 3 0 0
TP53 WILD-TYPE 4 5 6 6
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
TP53 MUTATED 3 2 0 1 0 0 1 0
TP53 WILD-TYPE 2 4 5 2 3 1 2 2
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TP53 MUTATED 3 2 6 0
TP53 WILD-TYPE 13 6 8 16

Figure S6.  Get High-res Image Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TP53 MUTATED 4 4 1 2
TP53 WILD-TYPE 12 12 3 16
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TP53 MUTATED 7 4 0
TP53 WILD-TYPE 19 7 18

Figure S7.  Get High-res Image Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TP53 MUTATED 4 2 2 3 0
TP53 WILD-TYPE 9 16 6 11 2
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00614 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TP53 MUTATED 8 3 0
TP53 WILD-TYPE 13 11 19

Figure S8.  Get High-res Image Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TP53 MUTATED 9 1 1
TP53 WILD-TYPE 21 15 7
'APOE MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
APOE MUTATED 3 2 1 1
APOE WILD-TYPE 18 18 9 8
'APOE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S90.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
APOE MUTATED 1 0 3 2 0
APOE WILD-TYPE 12 8 11 11 7
'APOE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
APOE MUTATED 1 2 0 0
APOE WILD-TYPE 7 6 6 6
'APOE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
APOE MUTATED 0 1 0 0 0 0 1 1
APOE WILD-TYPE 5 5 5 3 3 1 2 1
'APOE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
APOE MUTATED 2 0 4 0
APOE WILD-TYPE 14 8 10 16
'APOE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
APOE MUTATED 1 3 1 1
APOE WILD-TYPE 15 13 3 17
'APOE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
APOE MUTATED 2 3 1
APOE WILD-TYPE 24 8 17
'APOE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
APOE MUTATED 1 3 0 2 0
APOE WILD-TYPE 12 15 8 12 2
'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
APOE MUTATED 2 3 1
APOE WILD-TYPE 19 11 18
'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'APOE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
APOE MUTATED 3 2 1
APOE WILD-TYPE 27 14 7
'ZAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S99.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ZAR1 MUTATED 4 3 1 3
ZAR1 WILD-TYPE 17 17 9 6
'ZAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S100.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ZAR1 MUTATED 3 1 1 2 2
ZAR1 WILD-TYPE 10 7 13 11 5
'ZAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ZAR1 MUTATED 0 2 0 2
ZAR1 WILD-TYPE 8 6 6 4
'ZAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ZAR1 MUTATED 0 2 1 0 1 0 0 0
ZAR1 WILD-TYPE 5 4 4 3 2 1 3 2
'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ZAR1 MUTATED 3 0 2 4
ZAR1 WILD-TYPE 13 8 12 12
'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ZAR1 MUTATED 3 2 0 4
ZAR1 WILD-TYPE 13 14 4 14
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ZAR1 MUTATED 4 1 4
ZAR1 WILD-TYPE 22 10 14
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ZAR1 MUTATED 2 4 1 2 0
ZAR1 WILD-TYPE 11 14 7 12 2
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ZAR1 MUTATED 4 2 3
ZAR1 WILD-TYPE 17 12 16
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ZAR1 MUTATED 4 4 1
ZAR1 WILD-TYPE 26 12 7
'ASPDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S109.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ASPDH MUTATED 3 2 3 0
ASPDH WILD-TYPE 18 18 7 9
'ASPDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S110.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ASPDH MUTATED 3 1 3 1 0
ASPDH WILD-TYPE 10 7 11 12 7
'ASPDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ASPDH MUTATED 2 2 0 1
ASPDH WILD-TYPE 6 6 6 5
'ASPDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ASPDH MUTATED 0 3 0 1 0 0 1 0
ASPDH WILD-TYPE 5 3 5 2 3 1 2 2
'ASPDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ASPDH MUTATED 3 0 5 0
ASPDH WILD-TYPE 13 8 9 16

Figure S9.  Get High-res Image Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ASPDH MUTATED 3 4 0 1
ASPDH WILD-TYPE 13 12 4 17
'ASPDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ASPDH MUTATED 5 2 1
ASPDH WILD-TYPE 21 9 17
'ASPDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ASPDH MUTATED 4 0 0 4 0
ASPDH WILD-TYPE 9 18 8 10 2

Figure S10.  Get High-res Image Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ASPDH MUTATED 3 4 1
ASPDH WILD-TYPE 18 10 18
'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'ASPDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ASPDH MUTATED 7 0 1
ASPDH WILD-TYPE 23 16 7
'KCNK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S119.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KCNK17 MUTATED 3 1 2 3
KCNK17 WILD-TYPE 18 19 8 6
'KCNK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S120.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
KCNK17 MUTATED 0 2 5 1 0
KCNK17 WILD-TYPE 13 6 9 12 7

Figure S11.  Get High-res Image Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
KCNK17 MUTATED 1 4 0 1
KCNK17 WILD-TYPE 7 4 6 5
'KCNK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
KCNK17 MUTATED 1 3 0 0 1 0 0 1
KCNK17 WILD-TYPE 4 3 5 3 2 1 3 1
'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
KCNK17 MUTATED 1 1 5 1
KCNK17 WILD-TYPE 15 7 9 15
'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00942 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
KCNK17 MUTATED 0 6 1 1
KCNK17 WILD-TYPE 16 10 3 17

Figure S12.  Get High-res Image Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
KCNK17 MUTATED 4 2 2
KCNK17 WILD-TYPE 22 9 16
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
KCNK17 MUTATED 3 1 2 2 0
KCNK17 WILD-TYPE 10 17 6 12 2
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
KCNK17 MUTATED 4 1 3
KCNK17 WILD-TYPE 17 13 16
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
KCNK17 MUTATED 5 1 2
KCNK17 WILD-TYPE 25 15 6
'LZTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 1

Table S129.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
LZTR1 MUTATED 5 0 1 0
LZTR1 WILD-TYPE 16 20 9 9
'LZTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S130.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
LZTR1 MUTATED 2 0 1 1 0
LZTR1 WILD-TYPE 11 8 13 12 7
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
LZTR1 MUTATED 3 1 0 0
LZTR1 WILD-TYPE 13 7 14 16
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
LZTR1 MUTATED 2 1 1 0
LZTR1 WILD-TYPE 14 15 3 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
LZTR1 MUTATED 3 1 0
LZTR1 WILD-TYPE 23 10 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
LZTR1 MUTATED 0 0 0 3 1
LZTR1 WILD-TYPE 13 18 8 11 1

Figure S13.  Get High-res Image Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
LZTR1 MUTATED 2 1 1
LZTR1 WILD-TYPE 19 13 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
LZTR1 MUTATED 3 0 1
LZTR1 WILD-TYPE 27 16 7
'ERCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ERCC2 MUTATED 4 3 2 1
ERCC2 WILD-TYPE 17 17 8 8
'ERCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S138.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ERCC2 MUTATED 4 3 2 1 0
ERCC2 WILD-TYPE 9 5 12 12 7
'ERCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S139.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ERCC2 MUTATED 3 4 1 0
ERCC2 WILD-TYPE 5 4 5 6
'ERCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S140.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ERCC2 MUTATED 2 3 0 1 0 1 0 1
ERCC2 WILD-TYPE 3 3 5 2 3 0 3 1
'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ERCC2 MUTATED 4 2 3 1
ERCC2 WILD-TYPE 12 6 11 15
'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ERCC2 MUTATED 5 4 0 1
ERCC2 WILD-TYPE 11 12 4 17
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ERCC2 MUTATED 6 2 2
ERCC2 WILD-TYPE 20 9 16
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ERCC2 MUTATED 3 2 0 5 0
ERCC2 WILD-TYPE 10 16 8 9 2
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ERCC2 MUTATED 6 2 2
ERCC2 WILD-TYPE 15 12 17
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ERCC2 MUTATED 8 2 0
ERCC2 WILD-TYPE 22 14 8
'RINL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S147.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RINL MUTATED 5 2 0 1
RINL WILD-TYPE 16 18 10 8
'RINL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S148.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
RINL MUTATED 3 1 1 2 0
RINL WILD-TYPE 10 7 13 11 7
'RINL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S149.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
RINL MUTATED 1 1 0 2
RINL WILD-TYPE 7 7 6 4
'RINL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S150.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
RINL MUTATED 1 0 1 0 1 0 0 1
RINL WILD-TYPE 4 6 4 3 2 1 3 1
'RINL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
RINL MUTATED 4 1 1 1
RINL WILD-TYPE 12 7 13 15
'RINL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
RINL MUTATED 4 1 1 1
RINL WILD-TYPE 12 15 3 17
'RINL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
RINL MUTATED 3 2 2
RINL WILD-TYPE 23 9 16
'RINL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
RINL MUTATED 0 3 0 4 0
RINL WILD-TYPE 13 15 8 10 2
'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
RINL MUTATED 1 3 3
RINL WILD-TYPE 20 11 16
'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'RINL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
RINL MUTATED 3 3 1
RINL WILD-TYPE 27 13 7
'SYT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S157.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SYT8 MUTATED 1 4 2 1
SYT8 WILD-TYPE 20 16 8 8
'SYT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S158.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SYT8 MUTATED 0 2 2 1 1
SYT8 WILD-TYPE 13 6 12 12 6
'SYT8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S159.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
SYT8 MUTATED 1 1 1 0
SYT8 WILD-TYPE 7 7 5 6
'SYT8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S160.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
SYT8 MUTATED 1 1 1 0 0 0 0 0
SYT8 WILD-TYPE 4 5 4 3 3 1 3 2
'SYT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SYT8 MUTATED 0 3 1 2
SYT8 WILD-TYPE 16 5 13 14

Figure S14.  Get High-res Image Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SYT8 MUTATED 0 4 0 2
SYT8 WILD-TYPE 16 12 4 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SYT8 MUTATED 3 1 2
SYT8 WILD-TYPE 23 10 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SYT8 MUTATED 1 3 1 0 1
SYT8 WILD-TYPE 12 15 7 14 1
'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SYT8 MUTATED 2 1 3
SYT8 WILD-TYPE 19 13 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'SYT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SYT8 MUTATED 3 3 0
SYT8 WILD-TYPE 27 13 8
'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S167.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
LRIG1 MUTATED 5 4 3 4
LRIG1 WILD-TYPE 16 16 7 5
'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S168.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
LRIG1 MUTATED 3 2 2 3 1
LRIG1 WILD-TYPE 10 6 12 10 6
'LRIG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S169.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
LRIG1 MUTATED 2 0 0 2
LRIG1 WILD-TYPE 6 8 6 4
'LRIG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S170.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
LRIG1 MUTATED 1 1 1 1 0 0 0 0
LRIG1 WILD-TYPE 4 5 4 2 3 1 3 2
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
LRIG1 MUTATED 2 2 3 3
LRIG1 WILD-TYPE 14 6 11 13
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
LRIG1 MUTATED 3 2 0 5
LRIG1 WILD-TYPE 13 14 4 13
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
LRIG1 MUTATED 4 4 3
LRIG1 WILD-TYPE 22 7 15
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
LRIG1 MUTATED 1 3 3 4 0
LRIG1 WILD-TYPE 12 15 5 10 2
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
LRIG1 MUTATED 3 4 4
LRIG1 WILD-TYPE 18 10 15
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
LRIG1 MUTATED 7 3 1
LRIG1 WILD-TYPE 23 13 7
'C1ORF106 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S177.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
C1ORF106 MUTATED 4 2 2 1
C1ORF106 WILD-TYPE 17 18 8 8
'C1ORF106 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S178.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
C1ORF106 MUTATED 3 0 2 1 2
C1ORF106 WILD-TYPE 10 8 12 12 5
'C1ORF106 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S179.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
C1ORF106 MUTATED 1 1 0 3
C1ORF106 WILD-TYPE 7 7 6 3
'C1ORF106 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 1

Table S180.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
C1ORF106 MUTATED 1 0 0 2 2 0 0 0
C1ORF106 WILD-TYPE 4 6 5 1 1 1 3 2

Figure S15.  Get High-res Image Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
C1ORF106 MUTATED 4 2 1 1
C1ORF106 WILD-TYPE 12 6 13 15
'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
C1ORF106 MUTATED 3 2 1 2
C1ORF106 WILD-TYPE 13 14 3 16
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
C1ORF106 MUTATED 5 2 1
C1ORF106 WILD-TYPE 21 9 17
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
C1ORF106 MUTATED 1 2 2 3 0
C1ORF106 WILD-TYPE 12 16 6 11 2
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
C1ORF106 MUTATED 5 3 0
C1ORF106 WILD-TYPE 16 11 19
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
C1ORF106 MUTATED 5 2 1
C1ORF106 WILD-TYPE 25 14 7
'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S187.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
GPRIN2 MUTATED 2 3 2 1
GPRIN2 WILD-TYPE 19 17 8 8
'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S188.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
GPRIN2 MUTATED 1 0 4 1 1
GPRIN2 WILD-TYPE 12 8 10 12 6
'GPRIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S189.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
GPRIN2 MUTATED 0 2 0 2
GPRIN2 WILD-TYPE 8 6 6 4
'GPRIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S190.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
GPRIN2 MUTATED 0 1 1 0 1 0 0 1
GPRIN2 WILD-TYPE 5 5 4 3 2 1 3 1
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
GPRIN2 MUTATED 1 1 3 2
GPRIN2 WILD-TYPE 15 7 11 14
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
GPRIN2 MUTATED 1 4 0 2
GPRIN2 WILD-TYPE 15 12 4 16
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
GPRIN2 MUTATED 2 2 3
GPRIN2 WILD-TYPE 24 9 15
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
GPRIN2 MUTATED 1 4 1 1 0
GPRIN2 WILD-TYPE 12 14 7 13 2
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
GPRIN2 MUTATED 2 3 2
GPRIN2 WILD-TYPE 19 11 17
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
GPRIN2 MUTATED 2 4 1
GPRIN2 WILD-TYPE 28 12 7
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S197.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CTNNB1 MUTATED 4 2 1 0
CTNNB1 WILD-TYPE 17 18 9 9
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S198.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CTNNB1 MUTATED 3 2 1 0 0
CTNNB1 WILD-TYPE 10 6 13 13 7
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S199.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
CTNNB1 MUTATED 2 0 0 2
CTNNB1 WILD-TYPE 6 8 6 4
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S200.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
CTNNB1 MUTATED 1 1 0 0 2 0 0 0
CTNNB1 WILD-TYPE 4 5 5 3 1 1 3 2
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CTNNB1 MUTATED 4 2 0 0
CTNNB1 WILD-TYPE 12 6 14 16

Figure S16.  Get High-res Image Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CTNNB1 MUTATED 5 1 0 0
CTNNB1 WILD-TYPE 11 15 4 18

Figure S17.  Get High-res Image Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.77

Table S203.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CTNNB1 MUTATED 1 5 0
CTNNB1 WILD-TYPE 25 6 18

Figure S18.  Get High-res Image Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CTNNB1 MUTATED 0 2 0 4 0
CTNNB1 WILD-TYPE 13 16 8 10 2
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CTNNB1 MUTATED 3 3 0
CTNNB1 WILD-TYPE 18 11 19
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CTNNB1 MUTATED 4 2 0
CTNNB1 WILD-TYPE 26 14 8
'C16ORF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S207.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
C16ORF3 MUTATED 2 2 0 1
C16ORF3 WILD-TYPE 19 18 10 8
'C16ORF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.74

Table S208.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
C16ORF3 MUTATED 0 4 0 0 1
C16ORF3 WILD-TYPE 13 4 14 13 6

Figure S19.  Get High-res Image Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C16ORF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S209.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
C16ORF3 MUTATED 1 2 0 0
C16ORF3 WILD-TYPE 7 6 6 6
'C16ORF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S210.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
C16ORF3 MUTATED 1 2 0 0 0 0 0 0
C16ORF3 WILD-TYPE 4 4 5 3 3 1 3 2
'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
C16ORF3 MUTATED 1 1 2 1
C16ORF3 WILD-TYPE 15 7 12 15
'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
C16ORF3 MUTATED 2 2 0 1
C16ORF3 WILD-TYPE 14 14 4 17
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
C16ORF3 MUTATED 2 2 1
C16ORF3 WILD-TYPE 24 9 17
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
C16ORF3 MUTATED 1 2 1 1 0
C16ORF3 WILD-TYPE 12 16 7 13 2
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
C16ORF3 MUTATED 3 1 1
C16ORF3 WILD-TYPE 18 13 18
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
C16ORF3 MUTATED 3 2 0
C16ORF3 WILD-TYPE 27 14 8
'CCDC105 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S217.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CCDC105 MUTATED 2 2 1 1
CCDC105 WILD-TYPE 19 18 9 8
'CCDC105 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 1

Table S218.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CCDC105 MUTATED 1 3 0 0 2
CCDC105 WILD-TYPE 12 5 14 13 5

Figure S20.  Get High-res Image Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC105 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S219.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
CCDC105 MUTATED 1 2 0 0
CCDC105 WILD-TYPE 7 6 6 6
'CCDC105 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S220.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
CCDC105 MUTATED 1 1 0 0 0 0 0 1
CCDC105 WILD-TYPE 4 5 5 3 3 1 3 1
'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CCDC105 MUTATED 1 1 2 2
CCDC105 WILD-TYPE 15 7 12 14
'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CCDC105 MUTATED 3 1 0 2
CCDC105 WILD-TYPE 13 15 4 16
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CCDC105 MUTATED 3 1 2
CCDC105 WILD-TYPE 23 10 16
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CCDC105 MUTATED 1 0 2 2 1
CCDC105 WILD-TYPE 12 18 6 12 1
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CCDC105 MUTATED 4 0 2
CCDC105 WILD-TYPE 17 14 17
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CCDC105 MUTATED 5 0 1
CCDC105 WILD-TYPE 25 16 7
'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S227.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RGS9BP MUTATED 3 3 2 0
RGS9BP WILD-TYPE 18 17 8 9
'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S228.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
RGS9BP MUTATED 3 0 3 1 1
RGS9BP WILD-TYPE 10 8 11 12 6
'RGS9BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S229.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
RGS9BP MUTATED 1 1 1 0
RGS9BP WILD-TYPE 7 7 5 6
'RGS9BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S230.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
RGS9BP MUTATED 0 2 0 0 0 1 0 0
RGS9BP WILD-TYPE 5 4 5 3 3 0 3 2
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
RGS9BP MUTATED 2 1 2 2
RGS9BP WILD-TYPE 14 7 12 14
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
RGS9BP MUTATED 2 3 0 2
RGS9BP WILD-TYPE 14 13 4 16
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
RGS9BP MUTATED 2 3 3
RGS9BP WILD-TYPE 24 8 15
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
RGS9BP MUTATED 2 2 1 3 0
RGS9BP WILD-TYPE 11 16 7 11 2
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
RGS9BP MUTATED 2 4 2
RGS9BP WILD-TYPE 19 10 17
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
RGS9BP MUTATED 4 2 2
RGS9BP WILD-TYPE 26 14 6
'HHIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S237.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
HHIPL1 MUTATED 3 1 0 2
HHIPL1 WILD-TYPE 18 19 10 7
'HHIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S238.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
HHIPL1 MUTATED 2 0 0 2 1
HHIPL1 WILD-TYPE 11 8 14 11 6
'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S239.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
HHIPL1 MUTATED 3 0 1 1
HHIPL1 WILD-TYPE 13 8 13 15
'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S240.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
HHIPL1 MUTATED 2 1 1 1
HHIPL1 WILD-TYPE 14 15 3 17
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
HHIPL1 MUTATED 4 1 0
HHIPL1 WILD-TYPE 22 10 18
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
HHIPL1 MUTATED 2 0 1 2 0
HHIPL1 WILD-TYPE 11 18 7 12 2
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
HHIPL1 MUTATED 4 0 1
HHIPL1 WILD-TYPE 17 14 18
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
HHIPL1 MUTATED 4 0 1
HHIPL1 WILD-TYPE 26 16 7
'C10ORF95 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S245.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
C10ORF95 MUTATED 2 0 2 1
C10ORF95 WILD-TYPE 19 20 8 8
'C10ORF95 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S246.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
C10ORF95 MUTATED 1 0 3 0 1
C10ORF95 WILD-TYPE 12 8 11 13 6
'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S247.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
C10ORF95 MUTATED 1 2 1 1
C10ORF95 WILD-TYPE 15 6 13 15
'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S248.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
C10ORF95 MUTATED 1 2 0 2
C10ORF95 WILD-TYPE 15 14 4 16
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S249.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
C10ORF95 MUTATED 4 0 1
C10ORF95 WILD-TYPE 22 11 17
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S250.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
C10ORF95 MUTATED 1 1 1 1 1
C10ORF95 WILD-TYPE 12 17 7 13 1
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
C10ORF95 MUTATED 2 1 1
C10ORF95 WILD-TYPE 19 13 18
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
C10ORF95 MUTATED 3 1 0
C10ORF95 WILD-TYPE 27 15 8
'TSC22D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S253.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TSC22D2 MUTATED 4 2 1 1
TSC22D2 WILD-TYPE 17 18 9 8
'TSC22D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S254.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TSC22D2 MUTATED 2 0 2 1 2
TSC22D2 WILD-TYPE 11 8 12 12 5
'TSC22D2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S255.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
TSC22D2 MUTATED 0 1 1 1
TSC22D2 WILD-TYPE 8 7 5 5
'TSC22D2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S256.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
TSC22D2 MUTATED 0 1 1 0 1 0 0 0
TSC22D2 WILD-TYPE 5 5 4 3 2 1 3 2
'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S257.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TSC22D2 MUTATED 3 0 2 2
TSC22D2 WILD-TYPE 13 8 12 14
'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S258.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TSC22D2 MUTATED 2 2 1 2
TSC22D2 WILD-TYPE 14 14 3 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S259.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TSC22D2 MUTATED 3 2 2
TSC22D2 WILD-TYPE 23 9 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S260.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TSC22D2 MUTATED 1 2 0 4 0
TSC22D2 WILD-TYPE 12 16 8 10 2
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TSC22D2 MUTATED 1 3 3
TSC22D2 WILD-TYPE 20 11 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TSC22D2 MUTATED 4 2 1
TSC22D2 WILD-TYPE 26 14 7
'NOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S263.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NOXA1 MUTATED 3 0 2 0
NOXA1 WILD-TYPE 18 20 8 9
'NOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S264.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NOXA1 MUTATED 2 0 1 0 0
NOXA1 WILD-TYPE 11 8 13 13 7
'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S265.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NOXA1 MUTATED 2 1 0 0
NOXA1 WILD-TYPE 14 7 14 16
'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S266.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NOXA1 MUTATED 2 1 0 0
NOXA1 WILD-TYPE 14 15 4 18
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S267.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NOXA1 MUTATED 3 0 0
NOXA1 WILD-TYPE 23 11 18
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S268.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NOXA1 MUTATED 1 0 0 2 0
NOXA1 WILD-TYPE 12 18 8 12 2
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S269.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NOXA1 MUTATED 1 2 0
NOXA1 WILD-TYPE 20 12 19
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S270.  Gene #28: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NOXA1 MUTATED 3 0 0
NOXA1 WILD-TYPE 27 16 8
'THEM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S271.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
THEM4 MUTATED 3 0 1 1
THEM4 WILD-TYPE 18 20 9 8
'THEM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S272.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
THEM4 MUTATED 1 1 1 0 1
THEM4 WILD-TYPE 12 7 13 13 6
'THEM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S273.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
THEM4 MUTATED 1 1 2 0
THEM4 WILD-TYPE 15 7 12 16
'THEM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S274.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
THEM4 MUTATED 2 1 0 1
THEM4 WILD-TYPE 14 15 4 17
'THEM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S275.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
THEM4 MUTATED 2 2 0
THEM4 WILD-TYPE 24 9 18
'THEM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S276.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
THEM4 MUTATED 0 0 1 3 0
THEM4 WILD-TYPE 13 18 7 11 2
'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S277.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
THEM4 MUTATED 3 1 0
THEM4 WILD-TYPE 18 13 19
'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S278.  Gene #29: 'THEM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
THEM4 MUTATED 4 0 0
THEM4 WILD-TYPE 26 16 8
'ATXN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S279.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ATXN1 MUTATED 2 4 3 1
ATXN1 WILD-TYPE 19 16 7 8
'ATXN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S280.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ATXN1 MUTATED 1 4 2 1 1
ATXN1 WILD-TYPE 12 4 12 12 6
'ATXN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S281.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ATXN1 MUTATED 2 1 1 0
ATXN1 WILD-TYPE 6 7 5 6
'ATXN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S282.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ATXN1 MUTATED 2 1 1 0 0 0 0 0
ATXN1 WILD-TYPE 3 5 4 3 3 1 3 2
'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S283.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ATXN1 MUTATED 2 3 3 1
ATXN1 WILD-TYPE 14 5 11 15
'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S284.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ATXN1 MUTATED 3 4 0 2
ATXN1 WILD-TYPE 13 12 4 16
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S285.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ATXN1 MUTATED 5 3 1
ATXN1 WILD-TYPE 21 8 17
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S286.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ATXN1 MUTATED 2 2 2 3 0
ATXN1 WILD-TYPE 11 16 6 11 2
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S287.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ATXN1 MUTATED 6 1 2
ATXN1 WILD-TYPE 15 13 17
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S288.  Gene #30: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ATXN1 MUTATED 7 2 0
ATXN1 WILD-TYPE 23 14 8
'PLIN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S289.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PLIN5 MUTATED 1 3 0 1
PLIN5 WILD-TYPE 20 17 10 8
'PLIN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S290.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PLIN5 MUTATED 1 2 1 1 0
PLIN5 WILD-TYPE 12 6 13 12 7
'PLIN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S291.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
PLIN5 MUTATED 0 2 0 1
PLIN5 WILD-TYPE 8 6 6 5
'PLIN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S292.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
PLIN5 MUTATED 0 1 0 0 1 0 0 1
PLIN5 WILD-TYPE 5 5 5 3 2 1 3 1
'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S293.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PLIN5 MUTATED 1 1 2 1
PLIN5 WILD-TYPE 15 7 12 15
'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S294.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PLIN5 MUTATED 1 3 0 1
PLIN5 WILD-TYPE 15 13 4 17
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S295.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PLIN5 MUTATED 1 2 2
PLIN5 WILD-TYPE 25 9 16
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S296.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PLIN5 MUTATED 1 4 0 0 0
PLIN5 WILD-TYPE 12 14 8 14 2
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S297.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PLIN5 MUTATED 1 1 3
PLIN5 WILD-TYPE 20 13 16
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 1

Table S298.  Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PLIN5 MUTATED 1 4 0
PLIN5 WILD-TYPE 29 12 8

Figure S21.  Get High-res Image Gene #31: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OPRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S299.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
OPRD1 MUTATED 5 4 2 1
OPRD1 WILD-TYPE 16 16 8 8
'OPRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S300.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
OPRD1 MUTATED 3 1 3 1 3
OPRD1 WILD-TYPE 10 7 11 12 4
'OPRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S301.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
OPRD1 MUTATED 0 3 1 2
OPRD1 WILD-TYPE 8 5 5 4
'OPRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S302.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
OPRD1 MUTATED 0 2 1 1 2 0 0 0
OPRD1 WILD-TYPE 5 4 4 2 1 1 3 2
'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S303.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
OPRD1 MUTATED 4 2 3 2
OPRD1 WILD-TYPE 12 6 11 14
'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S304.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
OPRD1 MUTATED 3 4 1 3
OPRD1 WILD-TYPE 13 12 3 15
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S305.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
OPRD1 MUTATED 5 4 2
OPRD1 WILD-TYPE 21 7 16
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S306.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
OPRD1 MUTATED 1 5 1 4 0
OPRD1 WILD-TYPE 12 13 7 10 2
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S307.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
OPRD1 MUTATED 4 3 4
OPRD1 WILD-TYPE 17 11 15
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S308.  Gene #32: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
OPRD1 MUTATED 5 5 1
OPRD1 WILD-TYPE 25 11 7
'KRTAP4-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S309.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KRTAP4-5 MUTATED 2 3 0 0
KRTAP4-5 WILD-TYPE 19 17 10 9
'KRTAP4-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S310.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
KRTAP4-5 MUTATED 1 2 0 1 0
KRTAP4-5 WILD-TYPE 12 6 14 12 7
'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S311.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
KRTAP4-5 MUTATED 2 0 1 1
KRTAP4-5 WILD-TYPE 14 8 13 15
'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S312.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
KRTAP4-5 MUTATED 2 1 0 1
KRTAP4-5 WILD-TYPE 14 15 4 17
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
KRTAP4-5 MUTATED 2 1 1
KRTAP4-5 WILD-TYPE 24 10 17
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S314.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
KRTAP4-5 MUTATED 1 1 0 2 0
KRTAP4-5 WILD-TYPE 12 17 8 12 2
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S315.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
KRTAP4-5 MUTATED 3 0 1
KRTAP4-5 WILD-TYPE 18 14 18
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S316.  Gene #33: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
KRTAP4-5 MUTATED 3 1 0
KRTAP4-5 WILD-TYPE 27 15 8
'C19ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S317.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
C19ORF10 MUTATED 3 2 0 1
C19ORF10 WILD-TYPE 18 18 10 8
'C19ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S318.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
C19ORF10 MUTATED 2 1 3 0 0
C19ORF10 WILD-TYPE 11 7 11 13 7
'C19ORF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S319.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
C19ORF10 MUTATED 1 2 0 1
C19ORF10 WILD-TYPE 7 6 6 5
'C19ORF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S320.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
C19ORF10 MUTATED 0 2 0 0 1 0 0 1
C19ORF10 WILD-TYPE 5 4 5 3 2 1 3 1
'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S321.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
C19ORF10 MUTATED 2 2 2 0
C19ORF10 WILD-TYPE 14 6 12 16
'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S322.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
C19ORF10 MUTATED 2 4 0 0
C19ORF10 WILD-TYPE 14 12 4 18
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S323.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
C19ORF10 MUTATED 3 2 1
C19ORF10 WILD-TYPE 23 9 17
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S324.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
C19ORF10 MUTATED 2 2 0 2 0
C19ORF10 WILD-TYPE 11 16 8 12 2
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S325.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
C19ORF10 MUTATED 3 2 1
C19ORF10 WILD-TYPE 18 12 18
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S326.  Gene #34: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
C19ORF10 MUTATED 4 2 0
C19ORF10 WILD-TYPE 26 14 8
'AATK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S327.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
AATK MUTATED 0 4 1 1
AATK WILD-TYPE 21 16 9 8
'AATK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S328.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
AATK MUTATED 0 1 2 0 1
AATK WILD-TYPE 13 7 12 13 6
'AATK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S329.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
AATK MUTATED 0 1 2 1
AATK WILD-TYPE 16 7 12 15
'AATK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S330.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
AATK MUTATED 0 3 0 1
AATK WILD-TYPE 16 13 4 17
'AATK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S331.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
AATK MUTATED 2 1 1
AATK WILD-TYPE 24 10 17
'AATK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S332.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
AATK MUTATED 2 2 0 0 0
AATK WILD-TYPE 11 16 8 14 2
'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S333.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
AATK MUTATED 2 1 1
AATK WILD-TYPE 19 13 18
'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S334.  Gene #35: 'AATK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
AATK MUTATED 2 2 0
AATK WILD-TYPE 28 14 8
'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S335.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SARM1 MUTATED 3 0 2 1
SARM1 WILD-TYPE 18 20 8 8
'SARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S336.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SARM1 MUTATED 0 1 3 1 0
SARM1 WILD-TYPE 13 7 11 12 7
'SARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S337.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
SARM1 MUTATED 1 2 0 1
SARM1 WILD-TYPE 7 6 6 5
'SARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S338.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
SARM1 MUTATED 1 1 0 0 1 0 0 1
SARM1 WILD-TYPE 4 5 5 3 2 1 3 1
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S339.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SARM1 MUTATED 1 1 3 0
SARM1 WILD-TYPE 15 7 11 16
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S340.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SARM1 MUTATED 1 3 1 0
SARM1 WILD-TYPE 15 13 3 18
'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S341.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SARM1 MUTATED 1 2 2
SARM1 WILD-TYPE 25 9 16
'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S342.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SARM1 MUTATED 2 2 0 1 0
SARM1 WILD-TYPE 11 16 8 13 2
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S343.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SARM1 MUTATED 1 1 3
SARM1 WILD-TYPE 20 13 16
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S344.  Gene #36: 'SARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SARM1 MUTATED 1 2 2
SARM1 WILD-TYPE 29 14 6
'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S345.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TRIOBP MUTATED 4 4 2 0
TRIOBP WILD-TYPE 17 16 8 9
'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S346.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TRIOBP MUTATED 3 1 0 3 2
TRIOBP WILD-TYPE 10 7 14 10 5
'TRIOBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S347.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
TRIOBP MUTATED 2 0 1 0
TRIOBP WILD-TYPE 6 8 5 6
'TRIOBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S348.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
TRIOBP MUTATED 1 0 0 0 0 0 2 0
TRIOBP WILD-TYPE 4 6 5 3 3 1 1 2
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S349.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TRIOBP MUTATED 2 1 2 3
TRIOBP WILD-TYPE 14 7 12 13
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S350.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TRIOBP MUTATED 3 0 0 5
TRIOBP WILD-TYPE 13 16 4 13
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S351.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TRIOBP MUTATED 4 1 4
TRIOBP WILD-TYPE 22 10 14
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S352.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TRIOBP MUTATED 2 2 2 3 0
TRIOBP WILD-TYPE 11 16 6 11 2
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S353.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TRIOBP MUTATED 4 2 3
TRIOBP WILD-TYPE 17 12 16
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S354.  Gene #37: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TRIOBP MUTATED 5 2 2
TRIOBP WILD-TYPE 25 14 6
'ZNF598 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S355.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ZNF598 MUTATED 8 2 1 1
ZNF598 WILD-TYPE 13 18 9 8
'ZNF598 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S356.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ZNF598 MUTATED 3 0 2 4 0
ZNF598 WILD-TYPE 10 8 12 9 7
'ZNF598 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S357.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ZNF598 MUTATED 1 1 1 3
ZNF598 WILD-TYPE 7 7 5 3
'ZNF598 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S358.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ZNF598 MUTATED 1 0 2 1 1 0 1 0
ZNF598 WILD-TYPE 4 6 3 2 2 1 2 2
'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S359.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ZNF598 MUTATED 4 0 3 2
ZNF598 WILD-TYPE 12 8 11 14
'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S360.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ZNF598 MUTATED 3 2 1 3
ZNF598 WILD-TYPE 13 14 3 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S361.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ZNF598 MUTATED 4 2 3
ZNF598 WILD-TYPE 22 9 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S362.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ZNF598 MUTATED 1 3 0 5 0
ZNF598 WILD-TYPE 12 15 8 9 2
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S363.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ZNF598 MUTATED 3 2 4
ZNF598 WILD-TYPE 18 12 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S364.  Gene #38: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ZNF598 MUTATED 5 3 1
ZNF598 WILD-TYPE 25 13 7
'WDR34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S365.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
WDR34 MUTATED 3 1 0 1
WDR34 WILD-TYPE 18 19 10 8
'WDR34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S366.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
WDR34 MUTATED 2 0 1 1 1
WDR34 WILD-TYPE 11 8 13 12 6
'WDR34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S367.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
WDR34 MUTATED 2 0 1 2
WDR34 WILD-TYPE 14 8 13 14
'WDR34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S368.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
WDR34 MUTATED 2 2 0 1
WDR34 WILD-TYPE 14 14 4 17
'WDR34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S369.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
WDR34 MUTATED 3 1 1
WDR34 WILD-TYPE 23 10 17
'WDR34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S370.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
WDR34 MUTATED 1 1 0 3 0
WDR34 WILD-TYPE 12 17 8 11 2
'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S371.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
WDR34 MUTATED 2 2 1
WDR34 WILD-TYPE 19 12 18
'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S372.  Gene #39: 'WDR34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
WDR34 MUTATED 4 0 1
WDR34 WILD-TYPE 26 16 7
'ZNF628 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S373.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ZNF628 MUTATED 5 1 0 1
ZNF628 WILD-TYPE 16 19 10 8
'ZNF628 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S374.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ZNF628 MUTATED 2 1 1 1 0
ZNF628 WILD-TYPE 11 7 13 12 7
'ZNF628 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S375.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ZNF628 MUTATED 2 1 0 0
ZNF628 WILD-TYPE 6 7 6 6
'ZNF628 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S376.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ZNF628 MUTATED 1 1 0 0 0 0 0 1
ZNF628 WILD-TYPE 4 5 5 3 3 1 3 1
'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S377.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ZNF628 MUTATED 3 1 1 0
ZNF628 WILD-TYPE 13 7 13 16
'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S378.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ZNF628 MUTATED 3 1 1 0
ZNF628 WILD-TYPE 13 15 3 18
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 1

Table S379.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ZNF628 MUTATED 1 3 1
ZNF628 WILD-TYPE 25 8 17
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S380.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ZNF628 MUTATED 0 3 0 2 0
ZNF628 WILD-TYPE 13 15 8 12 2
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S381.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ZNF628 MUTATED 1 3 1
ZNF628 WILD-TYPE 20 11 18
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S382.  Gene #40: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ZNF628 MUTATED 2 2 1
ZNF628 WILD-TYPE 28 14 7
'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S383.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
BTBD11 MUTATED 2 2 1 1
BTBD11 WILD-TYPE 19 18 9 8
'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S384.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
BTBD11 MUTATED 1 1 1 0 2
BTBD11 WILD-TYPE 12 7 13 13 5
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S385.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
BTBD11 MUTATED 1 0 3 1
BTBD11 WILD-TYPE 15 8 11 15
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S386.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
BTBD11 MUTATED 1 2 0 2
BTBD11 WILD-TYPE 15 14 4 16
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S387.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
BTBD11 MUTATED 4 0 1
BTBD11 WILD-TYPE 22 11 17
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S388.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
BTBD11 MUTATED 2 0 2 1 0
BTBD11 WILD-TYPE 11 18 6 13 2
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S389.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
BTBD11 MUTATED 3 1 1
BTBD11 WILD-TYPE 18 13 18
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S390.  Gene #41: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
BTBD11 MUTATED 4 0 1
BTBD11 WILD-TYPE 26 16 7
'IRX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S391.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
IRX3 MUTATED 3 0 2 0
IRX3 WILD-TYPE 18 20 8 9
'IRX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S392.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
IRX3 MUTATED 0 1 2 1 0
IRX3 WILD-TYPE 13 7 12 12 7
'IRX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S393.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
IRX3 MUTATED 2 1 1 0
IRX3 WILD-TYPE 14 7 13 16
'IRX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S394.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
IRX3 MUTATED 1 2 1 0
IRX3 WILD-TYPE 15 14 3 18
'IRX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S395.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
IRX3 MUTATED 2 2 0
IRX3 WILD-TYPE 24 9 18
'IRX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S396.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
IRX3 MUTATED 2 1 0 1 0
IRX3 WILD-TYPE 11 17 8 13 2
'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S397.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
IRX3 MUTATED 3 1 0
IRX3 WILD-TYPE 18 13 19
'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S398.  Gene #42: 'IRX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
IRX3 MUTATED 3 0 1
IRX3 WILD-TYPE 27 16 7
'FPGS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S399.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
FPGS MUTATED 2 2 1 0
FPGS WILD-TYPE 19 18 9 9
'FPGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S400.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
FPGS MUTATED 1 1 1 1 0
FPGS WILD-TYPE 12 7 13 12 7
'FPGS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S401.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
FPGS MUTATED 2 0 1 0
FPGS WILD-TYPE 6 8 5 6
'FPGS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S402.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
FPGS MUTATED 1 1 0 0 0 1 0 0
FPGS WILD-TYPE 4 5 5 3 3 0 3 2
'FPGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S403.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
FPGS MUTATED 1 1 0 2
FPGS WILD-TYPE 15 7 14 14
'FPGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S404.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
FPGS MUTATED 2 0 0 2
FPGS WILD-TYPE 14 16 4 16
'FPGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 1

Table S405.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
FPGS MUTATED 0 2 2
FPGS WILD-TYPE 26 9 16
'FPGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S406.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
FPGS MUTATED 0 2 0 2 0
FPGS WILD-TYPE 13 16 8 12 2
'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S407.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
FPGS MUTATED 1 1 2
FPGS WILD-TYPE 20 13 17
'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S408.  Gene #43: 'FPGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
FPGS MUTATED 2 2 0
FPGS WILD-TYPE 28 14 8
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S409.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
MEN1 MUTATED 1 1 2 0
MEN1 WILD-TYPE 20 19 8 9
'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S410.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
MEN1 MUTATED 0 1 4 0 0
MEN1 WILD-TYPE 13 7 10 13 7

Figure S22.  Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S411.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
MEN1 MUTATED 0 1 4 0
MEN1 WILD-TYPE 16 7 10 16

Figure S23.  Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00683 (Fisher's exact test), Q value = 1

Table S412.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
MEN1 MUTATED 0 5 0 0
MEN1 WILD-TYPE 16 11 4 18

Figure S24.  Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S413.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
MEN1 MUTATED 4 1 0
MEN1 WILD-TYPE 22 10 18
'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S414.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
MEN1 MUTATED 4 0 0 1 0
MEN1 WILD-TYPE 9 18 8 13 2

Figure S25.  Get High-res Image Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S415.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
MEN1 MUTATED 4 1 0
MEN1 WILD-TYPE 17 13 19
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S416.  Gene #44: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
MEN1 MUTATED 5 0 0
MEN1 WILD-TYPE 25 16 8
'BHLHE22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S417.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
BHLHE22 MUTATED 1 2 2 0
BHLHE22 WILD-TYPE 20 18 8 9
'BHLHE22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 1

Table S418.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
BHLHE22 MUTATED 0 3 1 1 0
BHLHE22 WILD-TYPE 13 5 13 12 7
'BHLHE22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S419.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
BHLHE22 MUTATED 2 1 0 1
BHLHE22 WILD-TYPE 6 7 6 5
'BHLHE22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S420.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
BHLHE22 MUTATED 2 1 1 0 0 0 0 0
BHLHE22 WILD-TYPE 3 5 4 3 3 1 3 2
'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S421.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
BHLHE22 MUTATED 0 2 2 1
BHLHE22 WILD-TYPE 16 6 12 15
'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S422.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
BHLHE22 MUTATED 2 2 0 1
BHLHE22 WILD-TYPE 14 14 4 17
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S423.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
BHLHE22 MUTATED 2 2 1
BHLHE22 WILD-TYPE 24 9 17
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S424.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
BHLHE22 MUTATED 2 2 0 1 0
BHLHE22 WILD-TYPE 11 16 8 13 2
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S425.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
BHLHE22 MUTATED 3 1 1
BHLHE22 WILD-TYPE 18 13 18
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S426.  Gene #45: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
BHLHE22 MUTATED 3 2 0
BHLHE22 WILD-TYPE 27 14 8
'DMKN MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S427.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
DMKN MUTATED 2 1 0 0
DMKN WILD-TYPE 19 19 10 9
'DMKN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S428.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
DMKN MUTATED 0 1 2 0 0
DMKN WILD-TYPE 13 7 12 13 7
'DMKN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S429.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
DMKN MUTATED 1 1 1 0
DMKN WILD-TYPE 15 7 13 16
'DMKN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S430.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
DMKN MUTATED 1 2 0 0
DMKN WILD-TYPE 15 14 4 18
'DMKN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00622 (Fisher's exact test), Q value = 1

Table S431.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
DMKN MUTATED 0 3 0
DMKN WILD-TYPE 26 8 18

Figure S26.  Get High-res Image Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S432.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
DMKN MUTATED 0 1 0 2 0
DMKN WILD-TYPE 13 17 8 12 2
'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S433.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
DMKN MUTATED 1 2 0
DMKN WILD-TYPE 20 12 19
'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S434.  Gene #46: 'DMKN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
DMKN MUTATED 2 1 0
DMKN WILD-TYPE 28 15 8
'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S435.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
OBSCN MUTATED 9 6 1 2
OBSCN WILD-TYPE 12 14 9 7
'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S436.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
OBSCN MUTATED 4 4 2 4 2
OBSCN WILD-TYPE 9 4 12 9 5
'OBSCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
OBSCN MUTATED 2 2 2 2
OBSCN WILD-TYPE 6 6 4 4
'OBSCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S438.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
OBSCN MUTATED 1 2 1 0 2 0 2 0
OBSCN WILD-TYPE 4 4 4 3 1 1 1 2
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S439.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
OBSCN MUTATED 6 2 5 3
OBSCN WILD-TYPE 10 6 9 13
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S440.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
OBSCN MUTATED 5 4 2 5
OBSCN WILD-TYPE 11 12 2 13
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S441.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
OBSCN MUTATED 6 6 4
OBSCN WILD-TYPE 20 5 14
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S442.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
OBSCN MUTATED 2 5 3 6 0
OBSCN WILD-TYPE 11 13 5 8 2
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S443.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
OBSCN MUTATED 6 4 6
OBSCN WILD-TYPE 15 10 13
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S444.  Gene #47: 'OBSCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
OBSCN MUTATED 8 4 4
OBSCN WILD-TYPE 22 12 4
'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S445.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PANK2 MUTATED 3 1 0 1
PANK2 WILD-TYPE 18 19 10 8
'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S446.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PANK2 MUTATED 2 0 0 1 0
PANK2 WILD-TYPE 11 8 14 12 7
'PANK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S447.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
PANK2 MUTATED 2 0 0 1
PANK2 WILD-TYPE 6 8 6 5
'PANK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S448.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
PANK2 MUTATED 2 0 0 0 1 0 0 0
PANK2 WILD-TYPE 3 6 5 3 2 1 3 2
'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S449.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PANK2 MUTATED 3 0 0 0
PANK2 WILD-TYPE 13 8 14 16
'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 1

Table S450.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PANK2 MUTATED 2 0 1 0
PANK2 WILD-TYPE 14 16 3 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S451.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PANK2 MUTATED 2 1 0
PANK2 WILD-TYPE 24 10 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S452.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PANK2 MUTATED 1 0 0 2 0
PANK2 WILD-TYPE 12 18 8 12 2
'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S453.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PANK2 MUTATED 1 1 1
PANK2 WILD-TYPE 20 13 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S454.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PANK2 MUTATED 2 0 1
PANK2 WILD-TYPE 28 16 7
'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S455.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RREB1 MUTATED 3 1 1 0
RREB1 WILD-TYPE 18 19 9 9
'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S456.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
RREB1 MUTATED 2 0 1 1 0
RREB1 WILD-TYPE 11 8 13 12 7
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S457.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
RREB1 MUTATED 1 1 1 0
RREB1 WILD-TYPE 15 7 13 16
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S458.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
RREB1 MUTATED 1 1 0 1
RREB1 WILD-TYPE 15 15 4 17
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S459.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
RREB1 MUTATED 1 1 2
RREB1 WILD-TYPE 25 10 16
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S460.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
RREB1 MUTATED 2 2 0 0 0
RREB1 WILD-TYPE 11 16 8 14 2
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S461.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
RREB1 MUTATED 0 2 2
RREB1 WILD-TYPE 21 12 17
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S462.  Gene #49: 'RREB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
RREB1 MUTATED 1 2 1
RREB1 WILD-TYPE 29 14 7
'RNF149 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S463.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RNF149 MUTATED 0 2 1 1
RNF149 WILD-TYPE 21 18 9 8
'RNF149 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 1

Table S464.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
RNF149 MUTATED 0 0 2 0 2
RNF149 WILD-TYPE 13 8 12 13 5

Figure S27.  Get High-res Image Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF149 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S465.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
RNF149 MUTATED 0 1 1 1
RNF149 WILD-TYPE 8 7 5 5
'RNF149 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S466.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
RNF149 MUTATED 0 1 1 0 1 0 0 0
RNF149 WILD-TYPE 5 5 4 3 2 1 3 2
'RNF149 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S467.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
RNF149 MUTATED 0 1 2 1
RNF149 WILD-TYPE 16 7 12 15
'RNF149 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S468.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
RNF149 MUTATED 0 2 0 2
RNF149 WILD-TYPE 16 14 4 16
'RNF149 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S469.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
RNF149 MUTATED 1 2 1
RNF149 WILD-TYPE 25 9 17
'RNF149 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S470.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
RNF149 MUTATED 0 3 1 0 0
RNF149 WILD-TYPE 13 15 7 14 2
'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S471.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
RNF149 MUTATED 1 2 1
RNF149 WILD-TYPE 20 12 18
'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S472.  Gene #50: 'RNF149 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
RNF149 MUTATED 1 3 0
RNF149 WILD-TYPE 29 13 8
'GLTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S473.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
GLTPD2 MUTATED 3 1 1 1
GLTPD2 WILD-TYPE 18 19 9 8
'GLTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S474.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
GLTPD2 MUTATED 1 0 2 2 1
GLTPD2 WILD-TYPE 12 8 12 11 6
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S475.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
GLTPD2 MUTATED 2 0 2 2
GLTPD2 WILD-TYPE 14 8 12 14
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S476.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
GLTPD2 MUTATED 1 3 1 1
GLTPD2 WILD-TYPE 15 13 3 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S477.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
GLTPD2 MUTATED 3 2 1
GLTPD2 WILD-TYPE 23 9 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S478.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
GLTPD2 MUTATED 2 1 0 3 0
GLTPD2 WILD-TYPE 11 17 8 11 2
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S479.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
GLTPD2 MUTATED 3 1 2
GLTPD2 WILD-TYPE 18 13 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S480.  Gene #51: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
GLTPD2 MUTATED 4 0 2
GLTPD2 WILD-TYPE 26 16 6
'SNED1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S481.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SNED1 MUTATED 3 1 0 1
SNED1 WILD-TYPE 18 19 10 8
'SNED1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S482.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SNED1 MUTATED 2 2 1 0 0
SNED1 WILD-TYPE 11 6 13 13 7
'SNED1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S483.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SNED1 MUTATED 3 1 0 1
SNED1 WILD-TYPE 13 7 14 15
'SNED1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S484.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SNED1 MUTATED 3 1 0 1
SNED1 WILD-TYPE 13 15 4 17
'SNED1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 1

Table S485.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SNED1 MUTATED 1 3 1
SNED1 WILD-TYPE 25 8 17
'SNED1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S486.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SNED1 MUTATED 0 2 1 2 0
SNED1 WILD-TYPE 13 16 7 12 2
'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S487.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SNED1 MUTATED 2 1 2
SNED1 WILD-TYPE 19 13 17
'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S488.  Gene #52: 'SNED1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SNED1 MUTATED 2 2 1
SNED1 WILD-TYPE 28 14 7
'TPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S489.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TPO MUTATED 7 2 1 2
TPO WILD-TYPE 14 18 9 7
'TPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S490.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TPO MUTATED 3 3 1 2 0
TPO WILD-TYPE 10 5 13 11 7
'TPO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S491.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
TPO MUTATED 2 1 0 1
TPO WILD-TYPE 6 7 6 5
'TPO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S492.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
TPO MUTATED 2 1 0 0 1 0 0 0
TPO WILD-TYPE 3 5 5 3 2 1 3 2
'TPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S493.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TPO MUTATED 5 2 1 1
TPO WILD-TYPE 11 6 13 15
'TPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S494.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TPO MUTATED 4 2 2 1
TPO WILD-TYPE 12 14 2 17
'TPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0981 (Fisher's exact test), Q value = 1

Table S495.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TPO MUTATED 4 4 1
TPO WILD-TYPE 22 7 17
'TPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S496.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TPO MUTATED 1 2 1 5 0
TPO WILD-TYPE 12 16 7 9 2
'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S497.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TPO MUTATED 4 2 3
TPO WILD-TYPE 17 12 16
'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S498.  Gene #53: 'TPO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TPO MUTATED 5 1 3
TPO WILD-TYPE 25 15 5
'PTPLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S499.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PTPLA MUTATED 2 0 1 1
PTPLA WILD-TYPE 19 20 9 8
'PTPLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S500.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PTPLA MUTATED 0 1 2 0 0
PTPLA WILD-TYPE 13 7 12 13 7
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S501.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PTPLA MUTATED 1 0 2 0
PTPLA WILD-TYPE 15 8 12 16
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S502.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PTPLA MUTATED 1 2 0 0
PTPLA WILD-TYPE 15 14 4 18
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S503.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PTPLA MUTATED 1 1 1
PTPLA WILD-TYPE 25 10 17
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S504.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PTPLA MUTATED 1 1 0 1 0
PTPLA WILD-TYPE 12 17 8 13 2
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S505.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PTPLA MUTATED 2 0 1
PTPLA WILD-TYPE 19 14 18
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S506.  Gene #54: 'PTPLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PTPLA MUTATED 2 1 0
PTPLA WILD-TYPE 28 15 8
'PRSS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S507.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PRSS27 MUTATED 1 1 1 0
PRSS27 WILD-TYPE 20 19 9 9
'PRSS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S508.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PRSS27 MUTATED 0 1 1 1 0
PRSS27 WILD-TYPE 13 7 13 12 7
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S509.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PRSS27 MUTATED 1 1 1 0
PRSS27 WILD-TYPE 15 7 13 16
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S510.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PRSS27 MUTATED 0 2 1 0
PRSS27 WILD-TYPE 16 14 3 18
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S511.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PRSS27 MUTATED 1 2 0
PRSS27 WILD-TYPE 25 9 18
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S512.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PRSS27 MUTATED 1 1 0 1 0
PRSS27 WILD-TYPE 12 17 8 13 2
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S513.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PRSS27 MUTATED 1 0 2
PRSS27 WILD-TYPE 20 14 17
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S514.  Gene #55: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PRSS27 MUTATED 1 1 1
PRSS27 WILD-TYPE 29 15 7
'CD320 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S515.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CD320 MUTATED 2 1 1 0
CD320 WILD-TYPE 19 19 9 9
'CD320 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S516.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CD320 MUTATED 1 0 1 2 0
CD320 WILD-TYPE 12 8 13 11 7
'CD320 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S517.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CD320 MUTATED 1 0 2 1
CD320 WILD-TYPE 15 8 12 15
'CD320 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S518.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CD320 MUTATED 1 1 1 1
CD320 WILD-TYPE 15 15 3 17
'CD320 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S519.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CD320 MUTATED 3 1 0
CD320 WILD-TYPE 23 10 18
'CD320 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S520.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CD320 MUTATED 1 0 2 1 0
CD320 WILD-TYPE 12 18 6 13 2
'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S521.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CD320 MUTATED 3 1 0
CD320 WILD-TYPE 18 13 19
'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S522.  Gene #56: 'CD320 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CD320 MUTATED 4 0 0
CD320 WILD-TYPE 26 16 8
'SEMA5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S523.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SEMA5B MUTATED 5 2 0 1
SEMA5B WILD-TYPE 16 18 10 8
'SEMA5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S524.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SEMA5B MUTATED 2 1 0 3 0
SEMA5B WILD-TYPE 11 7 14 10 7
'SEMA5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S525.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
SEMA5B MUTATED 2 0 1 1
SEMA5B WILD-TYPE 6 8 5 5
'SEMA5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S526.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
SEMA5B MUTATED 2 0 1 0 0 1 0 0
SEMA5B WILD-TYPE 3 6 4 3 3 0 3 2
'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S527.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SEMA5B MUTATED 3 1 0 2
SEMA5B WILD-TYPE 13 7 14 14
'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S528.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SEMA5B MUTATED 3 0 1 2
SEMA5B WILD-TYPE 13 16 3 16
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S529.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SEMA5B MUTATED 2 2 2
SEMA5B WILD-TYPE 24 9 16
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S530.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SEMA5B MUTATED 0 4 0 2 0
SEMA5B WILD-TYPE 13 14 8 12 2
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S531.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SEMA5B MUTATED 1 3 2
SEMA5B WILD-TYPE 20 11 17
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S532.  Gene #57: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SEMA5B MUTATED 2 3 1
SEMA5B WILD-TYPE 28 13 7
'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S533.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CCDC150 MUTATED 2 0 2 0
CCDC150 WILD-TYPE 19 20 8 9
'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S534.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CCDC150 MUTATED 2 0 1 1 0
CCDC150 WILD-TYPE 11 8 13 12 7
'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S535.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
CCDC150 MUTATED 1 1 0 1
CCDC150 WILD-TYPE 7 7 6 5
'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S536.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
CCDC150 MUTATED 0 1 0 1 1 0 0 0
CCDC150 WILD-TYPE 5 5 5 2 2 1 3 2
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S537.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CCDC150 MUTATED 3 0 1 0
CCDC150 WILD-TYPE 13 8 13 16
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S538.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CCDC150 MUTATED 2 1 1 0
CCDC150 WILD-TYPE 14 15 3 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S539.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CCDC150 MUTATED 3 1 0
CCDC150 WILD-TYPE 23 10 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S540.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CCDC150 MUTATED 1 0 0 3 0
CCDC150 WILD-TYPE 12 18 8 11 2
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CCDC150 MUTATED 2 1 1
CCDC150 WILD-TYPE 19 13 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S542.  Gene #58: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CCDC150 MUTATED 3 0 1
CCDC150 WILD-TYPE 27 16 7
'TAF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S543.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TAF5 MUTATED 2 1 1 0
TAF5 WILD-TYPE 19 19 9 9
'TAF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S544.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TAF5 MUTATED 1 1 1 0 1
TAF5 WILD-TYPE 12 7 13 13 6
'TAF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S545.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
TAF5 MUTATED 1 1 0 1
TAF5 WILD-TYPE 7 7 6 5
'TAF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S546.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
TAF5 MUTATED 1 1 0 0 1 0 0 0
TAF5 WILD-TYPE 4 5 5 3 2 1 3 2
'TAF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S547.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TAF5 MUTATED 1 1 1 1
TAF5 WILD-TYPE 15 7 13 15
'TAF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S548.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TAF5 MUTATED 2 1 0 1
TAF5 WILD-TYPE 14 15 4 17
'TAF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00926 (Fisher's exact test), Q value = 1

Table S549.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TAF5 MUTATED 0 3 1
TAF5 WILD-TYPE 26 8 17

Figure S28.  Get High-res Image Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S550.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TAF5 MUTATED 0 4 0 0 0
TAF5 WILD-TYPE 13 14 8 14 2
'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 1

Table S551.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TAF5 MUTATED 0 3 1
TAF5 WILD-TYPE 21 11 18
'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 1

Table S552.  Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TAF5 MUTATED 0 4 0
TAF5 WILD-TYPE 30 12 8

Figure S29.  Get High-res Image Gene #59: 'TAF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 1

Table S553.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
GARS MUTATED 5 4 4 6
GARS WILD-TYPE 16 16 6 3
'GARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S554.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
GARS MUTATED 2 0 4 5 4
GARS WILD-TYPE 11 8 10 8 3
'GARS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S555.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
GARS MUTATED 2 1 3 3
GARS WILD-TYPE 6 7 3 3
'GARS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S556.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
GARS MUTATED 2 1 4 1 0 0 1 0
GARS WILD-TYPE 3 5 1 2 3 1 2 2
'GARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S557.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
GARS MUTATED 3 1 4 7
GARS WILD-TYPE 13 7 10 9
'GARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S558.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
GARS MUTATED 2 3 2 8
GARS WILD-TYPE 14 13 2 10
'GARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S559.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
GARS MUTATED 6 1 8
GARS WILD-TYPE 20 10 10
'GARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S560.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
GARS MUTATED 3 6 4 2 0
GARS WILD-TYPE 10 12 4 12 2
'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S561.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
GARS MUTATED 5 2 8
GARS WILD-TYPE 16 12 11
'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S562.  Gene #60: 'GARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
GARS MUTATED 6 6 3
GARS WILD-TYPE 24 10 5
'MUC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S563.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
MUC5B MUTATED 8 7 3 3
MUC5B WILD-TYPE 13 13 7 6
'MUC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S564.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
MUC5B MUTATED 3 3 6 4 4
MUC5B WILD-TYPE 10 5 8 9 3
'MUC5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S565.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
MUC5B MUTATED 2 3 4 2
MUC5B WILD-TYPE 6 5 2 4
'MUC5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S566.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
MUC5B MUTATED 2 2 2 0 2 0 2 1
MUC5B WILD-TYPE 3 4 3 3 1 1 1 1
'MUC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S567.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
MUC5B MUTATED 5 3 7 5
MUC5B WILD-TYPE 11 5 7 11
'MUC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S568.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
MUC5B MUTATED 4 7 2 7
MUC5B WILD-TYPE 12 9 2 11
'MUC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S569.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
MUC5B MUTATED 8 5 7
MUC5B WILD-TYPE 18 6 11
'MUC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S570.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
MUC5B MUTATED 3 7 4 6 0
MUC5B WILD-TYPE 10 11 4 8 2
'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
MUC5B MUTATED 7 5 7
MUC5B WILD-TYPE 14 9 12
'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S572.  Gene #61: 'MUC5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
MUC5B MUTATED 9 6 4
MUC5B WILD-TYPE 21 10 4
'KIAA1984 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S573.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KIAA1984 MUTATED 2 0 1 1
KIAA1984 WILD-TYPE 19 20 9 8
'KIAA1984 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S574.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
KIAA1984 MUTATED 0 1 2 1 0
KIAA1984 WILD-TYPE 13 7 12 12 7
'KIAA1984 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S575.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
KIAA1984 MUTATED 0 2 0 1
KIAA1984 WILD-TYPE 8 6 6 5
'KIAA1984 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S576.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
KIAA1984 MUTATED 0 2 0 0 1 0 0 0
KIAA1984 WILD-TYPE 5 4 5 3 2 1 3 2
'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S577.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
KIAA1984 MUTATED 1 0 3 0
KIAA1984 WILD-TYPE 15 8 11 16
'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 1

Table S578.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
KIAA1984 MUTATED 0 3 1 0
KIAA1984 WILD-TYPE 16 13 3 18

Figure S30.  Get High-res Image Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S579.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
KIAA1984 MUTATED 1 3 0
KIAA1984 WILD-TYPE 25 8 18

Figure S31.  Get High-res Image Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S580.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
KIAA1984 MUTATED 0 1 1 2 0
KIAA1984 WILD-TYPE 13 17 7 12 2
'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S581.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
KIAA1984 MUTATED 1 2 1
KIAA1984 WILD-TYPE 20 12 18
'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S582.  Gene #62: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
KIAA1984 MUTATED 2 1 1
KIAA1984 WILD-TYPE 28 15 7
'SRPX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S583.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SRPX MUTATED 1 2 0 0
SRPX WILD-TYPE 20 18 10 9
'SRPX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S584.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SRPX MUTATED 0 2 0 1 0
SRPX WILD-TYPE 13 6 14 12 7
'SRPX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S585.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SRPX MUTATED 0 1 1 1
SRPX WILD-TYPE 16 7 13 15
'SRPX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S586.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SRPX MUTATED 1 1 0 1
SRPX WILD-TYPE 15 15 4 17
'SRPX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S587.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SRPX MUTATED 1 1 1
SRPX WILD-TYPE 25 10 17
'SRPX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S588.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SRPX MUTATED 1 2 0 0 0
SRPX WILD-TYPE 12 16 8 14 2
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SRPX MUTATED 1 1 1
SRPX WILD-TYPE 20 13 18
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S590.  Gene #63: 'SRPX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SRPX MUTATED 1 2 0
SRPX WILD-TYPE 29 14 8
'TNIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S591.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TNIP2 MUTATED 3 1 0 1
TNIP2 WILD-TYPE 18 19 10 8
'TNIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S592.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
TNIP2 MUTATED 1 1 2 0 0
TNIP2 WILD-TYPE 12 7 12 13 7
'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S593.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
TNIP2 MUTATED 1 0 2 1
TNIP2 WILD-TYPE 15 8 12 15
'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S594.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
TNIP2 MUTATED 1 2 0 1
TNIP2 WILD-TYPE 15 14 4 17
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S595.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
TNIP2 MUTATED 2 1 1
TNIP2 WILD-TYPE 24 10 17
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S596.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
TNIP2 MUTATED 1 0 1 2 0
TNIP2 WILD-TYPE 12 18 7 12 2
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
TNIP2 MUTATED 2 1 1
TNIP2 WILD-TYPE 19 13 18
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S598.  Gene #64: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
TNIP2 MUTATED 3 0 1
TNIP2 WILD-TYPE 27 16 7
'IDUA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S599.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
IDUA MUTATED 5 1 1 1
IDUA WILD-TYPE 16 19 9 8
'IDUA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S600.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
IDUA MUTATED 2 1 3 1 0
IDUA WILD-TYPE 11 7 11 12 7
'IDUA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S601.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
IDUA MUTATED 1 1 0 2
IDUA WILD-TYPE 7 7 6 4
'IDUA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S602.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
IDUA MUTATED 1 0 1 1 1 0 0 0
IDUA WILD-TYPE 4 6 4 2 2 1 3 2
'IDUA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S603.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
IDUA MUTATED 3 2 1 1
IDUA WILD-TYPE 13 6 13 15
'IDUA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S604.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
IDUA MUTATED 3 3 0 1
IDUA WILD-TYPE 13 13 4 17
'IDUA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S605.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
IDUA MUTATED 3 3 1
IDUA WILD-TYPE 23 8 17
'IDUA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S606.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
IDUA MUTATED 1 2 0 4 0
IDUA WILD-TYPE 12 16 8 10 2
'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S607.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
IDUA MUTATED 4 2 1
IDUA WILD-TYPE 17 12 18
'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S608.  Gene #65: 'IDUA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
IDUA MUTATED 5 2 0
IDUA WILD-TYPE 25 14 8
'RNF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S609.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RNF39 MUTATED 3 1 1 0
RNF39 WILD-TYPE 18 19 9 9
'RNF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S610.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
RNF39 MUTATED 1 2 2 0 0
RNF39 WILD-TYPE 12 6 12 13 7
'RNF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S611.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
RNF39 MUTATED 1 3 0 0
RNF39 WILD-TYPE 7 5 6 6
'RNF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S612.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
RNF39 MUTATED 1 2 0 1 0 0 0 0
RNF39 WILD-TYPE 4 4 5 2 3 1 3 2
'RNF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S613.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
RNF39 MUTATED 1 1 3 0
RNF39 WILD-TYPE 15 7 11 16
'RNF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S614.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
RNF39 MUTATED 2 3 0 0
RNF39 WILD-TYPE 14 13 4 18
'RNF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S615.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
RNF39 MUTATED 3 2 0
RNF39 WILD-TYPE 23 9 18
'RNF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S616.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
RNF39 MUTATED 2 1 0 2 0
RNF39 WILD-TYPE 11 17 8 12 2
'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S617.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
RNF39 MUTATED 3 2 0
RNF39 WILD-TYPE 18 12 19
'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S618.  Gene #66: 'RNF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
RNF39 MUTATED 4 1 0
RNF39 WILD-TYPE 26 15 8
'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S619.  Gene #67: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PABPC1 MUTATED 1 1 2 0
PABPC1 WILD-TYPE 20 19 8 9
'SCRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S620.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SCRT1 MUTATED 2 1 0 0
SCRT1 WILD-TYPE 19 19 10 9
'SCRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S621.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SCRT1 MUTATED 2 0 0 1 0
SCRT1 WILD-TYPE 11 8 14 12 7
'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S622.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SCRT1 MUTATED 2 0 1 0
SCRT1 WILD-TYPE 14 8 13 16
'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S623.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SCRT1 MUTATED 2 0 0 1
SCRT1 WILD-TYPE 14 16 4 17
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S624.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 24 10 18
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S625.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SCRT1 MUTATED 0 1 1 1 0
SCRT1 WILD-TYPE 13 17 7 13 2
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S626.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 19 13 19
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S627.  Gene #68: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 28 15 8
'MAP1S MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S628.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
MAP1S MUTATED 0 2 1 2
MAP1S WILD-TYPE 21 18 9 7
'MAP1S MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S629.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
MAP1S MUTATED 1 1 0 3 0
MAP1S WILD-TYPE 12 7 14 10 7
'MAP1S MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S630.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
MAP1S MUTATED 2 0 0 2
MAP1S WILD-TYPE 6 8 6 4
'MAP1S MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S631.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
MAP1S MUTATED 2 0 2 0 0 0 0 0
MAP1S WILD-TYPE 3 6 3 3 3 1 3 2
'MAP1S MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S632.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
MAP1S MUTATED 1 1 0 3
MAP1S WILD-TYPE 15 7 14 13
'MAP1S MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S633.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
MAP1S MUTATED 2 1 0 2
MAP1S WILD-TYPE 14 15 4 16
'MAP1S MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S634.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
MAP1S MUTATED 2 1 2
MAP1S WILD-TYPE 24 10 16
'MAP1S MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S635.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
MAP1S MUTATED 2 2 0 1 0
MAP1S WILD-TYPE 11 16 8 13 2
'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S636.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
MAP1S MUTATED 3 0 2
MAP1S WILD-TYPE 18 14 17
'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S637.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
MAP1S MUTATED 3 2 0
MAP1S WILD-TYPE 27 14 8
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S638.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NF1 MUTATED 4 1 0 2
NF1 WILD-TYPE 17 19 10 7
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S639.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NF1 MUTATED 2 0 2 2 1
NF1 WILD-TYPE 11 8 12 11 6
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S640.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
NF1 MUTATED 1 2 0 1
NF1 WILD-TYPE 7 6 6 5
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S641.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
NF1 MUTATED 1 0 0 1 1 0 0 1
NF1 WILD-TYPE 4 6 5 2 2 1 3 1
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S642.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NF1 MUTATED 4 0 2 1
NF1 WILD-TYPE 12 8 12 15
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S643.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NF1 MUTATED 2 2 2 1
NF1 WILD-TYPE 14 14 2 17
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S644.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NF1 MUTATED 2 3 2
NF1 WILD-TYPE 24 8 16
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S645.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NF1 MUTATED 1 2 1 3 0
NF1 WILD-TYPE 12 16 7 11 2
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S646.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NF1 MUTATED 3 2 2
NF1 WILD-TYPE 18 12 17
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 1

Table S647.  Gene #70: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NF1 MUTATED 3 1 3
NF1 WILD-TYPE 27 15 5
'AKAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S648.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
AKAP2 MUTATED 1 0 1 2
AKAP2 WILD-TYPE 20 20 9 7
'AKAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S649.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
AKAP2 MUTATED 0 0 2 2 0
AKAP2 WILD-TYPE 13 8 12 11 7
'AKAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S650.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
AKAP2 MUTATED 0 2 0 1
AKAP2 WILD-TYPE 8 6 6 5
'AKAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S651.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
AKAP2 MUTATED 0 1 1 0 0 0 0 1
AKAP2 WILD-TYPE 5 5 4 3 3 1 3 1
'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S652.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
AKAP2 MUTATED 1 0 2 1
AKAP2 WILD-TYPE 15 8 12 15
'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S653.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
AKAP2 MUTATED 0 2 1 1
AKAP2 WILD-TYPE 16 14 3 17
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S654.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
AKAP2 MUTATED 1 1 2
AKAP2 WILD-TYPE 25 10 16
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S655.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
AKAP2 MUTATED 1 3 0 0 0
AKAP2 WILD-TYPE 12 15 8 14 2
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S656.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
AKAP2 MUTATED 1 1 2
AKAP2 WILD-TYPE 20 13 17
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S657.  Gene #71: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
AKAP2 MUTATED 1 2 1
AKAP2 WILD-TYPE 29 14 7
'NOTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S658.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NOTCH2 MUTATED 4 1 0 0
NOTCH2 WILD-TYPE 17 19 10 9
'NOTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S659.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NOTCH2 MUTATED 1 0 2 1 0
NOTCH2 WILD-TYPE 12 8 12 12 7
'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S660.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NOTCH2 MUTATED 2 1 1 0
NOTCH2 WILD-TYPE 14 7 13 16
'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S661.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NOTCH2 MUTATED 1 2 1 0
NOTCH2 WILD-TYPE 15 14 3 18
'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 1

Table S662.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NOTCH2 MUTATED 1 3 0
NOTCH2 WILD-TYPE 25 8 18

Figure S32.  Get High-res Image Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S663.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NOTCH2 MUTATED 0 1 0 3 0
NOTCH2 WILD-TYPE 13 17 8 11 2
'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S664.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NOTCH2 MUTATED 1 2 1
NOTCH2 WILD-TYPE 20 12 18
'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S665.  Gene #72: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NOTCH2 MUTATED 2 1 1
NOTCH2 WILD-TYPE 28 15 7
'FANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S666.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
FANK1 MUTATED 2 1 1 0
FANK1 WILD-TYPE 19 19 9 9
'FANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S667.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
FANK1 MUTATED 0 1 0 1 1
FANK1 WILD-TYPE 13 7 14 12 6
'FANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S668.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
FANK1 MUTATED 1 1 0 1
FANK1 WILD-TYPE 15 7 14 15
'FANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S669.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
FANK1 MUTATED 1 0 1 1
FANK1 WILD-TYPE 15 16 3 17
'FANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S670.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
FANK1 MUTATED 1 1 1
FANK1 WILD-TYPE 25 10 17
'FANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S671.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
FANK1 MUTATED 0 0 1 2 0
FANK1 WILD-TYPE 13 18 7 12 2
'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S672.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
FANK1 MUTATED 2 0 1
FANK1 WILD-TYPE 19 14 18
'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S673.  Gene #73: 'FANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
FANK1 MUTATED 2 0 1
FANK1 WILD-TYPE 28 16 7
'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 1

Table S674.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NEFH MUTATED 5 0 1 0
NEFH WILD-TYPE 16 20 9 9
'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S675.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NEFH MUTATED 3 0 0 1 0
NEFH WILD-TYPE 10 8 14 12 7
'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S676.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NEFH MUTATED 3 0 0 0
NEFH WILD-TYPE 13 8 14 16
'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S677.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NEFH MUTATED 2 0 1 0
NEFH WILD-TYPE 14 16 3 18
'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S678.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NEFH MUTATED 3 1 0
NEFH WILD-TYPE 23 10 18
'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S679.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NEFH MUTATED 1 0 0 3 0
NEFH WILD-TYPE 12 18 8 11 2
'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S680.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NEFH MUTATED 1 2 1
NEFH WILD-TYPE 20 12 18
'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S681.  Gene #74: 'NEFH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NEFH MUTATED 3 0 1
NEFH WILD-TYPE 27 16 7
'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S682.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NPTX1 MUTATED 1 1 0 1
NPTX1 WILD-TYPE 20 19 10 8
'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S683.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NPTX1 MUTATED 1 0 1 1 0
NPTX1 WILD-TYPE 12 8 13 12 7
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S684.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NPTX1 MUTATED 1 0 1 1
NPTX1 WILD-TYPE 15 8 13 15
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S685.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NPTX1 MUTATED 1 0 0 2
NPTX1 WILD-TYPE 15 16 4 16
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S686.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NPTX1 MUTATED 1 0 2
NPTX1 WILD-TYPE 25 11 16
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S687.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NPTX1 MUTATED 0 1 1 1 0
NPTX1 WILD-TYPE 13 17 7 13 2
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S688.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NPTX1 MUTATED 0 1 2
NPTX1 WILD-TYPE 21 13 17
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S689.  Gene #75: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NPTX1 MUTATED 1 1 1
NPTX1 WILD-TYPE 29 15 7
'KBTBD13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S690.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KBTBD13 MUTATED 5 3 0 1
KBTBD13 WILD-TYPE 16 17 10 8
'KBTBD13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S691.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
KBTBD13 MUTATED 3 1 0 2 3
KBTBD13 WILD-TYPE 10 7 14 11 4
'KBTBD13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S692.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
KBTBD13 MUTATED 1 1 1 1
KBTBD13 WILD-TYPE 7 7 5 5
'KBTBD13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S693.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
KBTBD13 MUTATED 1 0 1 1 1 0 0 0
KBTBD13 WILD-TYPE 4 6 4 2 2 1 3 2
'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S694.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
KBTBD13 MUTATED 4 1 1 3
KBTBD13 WILD-TYPE 12 7 13 13
'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S695.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
KBTBD13 MUTATED 4 0 1 4
KBTBD13 WILD-TYPE 12 16 3 14
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S696.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
KBTBD13 MUTATED 4 2 3
KBTBD13 WILD-TYPE 22 9 15
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S697.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
KBTBD13 MUTATED 0 4 2 3 0
KBTBD13 WILD-TYPE 13 14 6 11 2
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S698.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
KBTBD13 MUTATED 4 2 3
KBTBD13 WILD-TYPE 17 12 16
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S699.  Gene #76: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
KBTBD13 MUTATED 4 4 1
KBTBD13 WILD-TYPE 26 12 7
'RASIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S700.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RASIP1 MUTATED 1 3 2 0
RASIP1 WILD-TYPE 20 17 8 9
'RASIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S701.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
RASIP1 MUTATED 2 2 2 0 0
RASIP1 WILD-TYPE 11 6 12 13 7
'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 1

Table S702.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
RASIP1 MUTATED 2 3 1 0
RASIP1 WILD-TYPE 14 5 13 16

Figure S33.  Get High-res Image Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S703.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
RASIP1 MUTATED 3 3 0 0
RASIP1 WILD-TYPE 13 13 4 18
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S704.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
RASIP1 MUTATED 3 3 0
RASIP1 WILD-TYPE 23 8 18
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S705.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
RASIP1 MUTATED 1 2 0 3 0
RASIP1 WILD-TYPE 12 16 8 11 2
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S706.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
RASIP1 MUTATED 2 3 1
RASIP1 WILD-TYPE 19 11 18
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S707.  Gene #77: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
RASIP1 MUTATED 4 2 0
RASIP1 WILD-TYPE 26 14 8
'AR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S708.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
AR MUTATED 2 0 1 1
AR WILD-TYPE 19 20 9 8
'AR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S709.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
AR MUTATED 2 0 1 0 0
AR WILD-TYPE 11 8 13 13 7
'AR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S710.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
AR MUTATED 1 1 0 1
AR WILD-TYPE 7 7 6 5
'AR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S711.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
AR MUTATED 1 1 0 0 1 0 0 0
AR WILD-TYPE 4 5 5 3 2 1 3 2
'AR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S712.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
AR MUTATED 2 0 1 0
AR WILD-TYPE 14 8 13 16
'AR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S713.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
AR MUTATED 2 1 0 0
AR WILD-TYPE 14 15 4 18
'AR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S714.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
AR MUTATED 2 1 0
AR WILD-TYPE 24 10 18
'AR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S715.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
AR MUTATED 1 1 0 1 0
AR WILD-TYPE 12 17 8 13 2
'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S716.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
AR MUTATED 1 2 0
AR WILD-TYPE 20 12 19
'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S717.  Gene #78: 'AR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
AR MUTATED 2 1 0
AR WILD-TYPE 28 15 8
'KNDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S718.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KNDC1 MUTATED 1 4 2 2
KNDC1 WILD-TYPE 20 16 8 7
'KNDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 1

Table S719.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
KNDC1 MUTATED 0 2 2 1 3
KNDC1 WILD-TYPE 13 6 12 12 4
'KNDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S720.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
KNDC1 MUTATED 2 0 0 1
KNDC1 WILD-TYPE 6 8 6 5
'KNDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S721.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
KNDC1 MUTATED 2 0 1 0 0 0 0 0
KNDC1 WILD-TYPE 3 6 4 3 3 1 3 2
'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 1

Table S722.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
KNDC1 MUTATED 0 3 1 4
KNDC1 WILD-TYPE 16 5 13 12

Figure S34.  Get High-res Image Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S723.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
KNDC1 MUTATED 1 2 0 5
KNDC1 WILD-TYPE 15 14 4 13
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S724.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
KNDC1 MUTATED 2 2 4
KNDC1 WILD-TYPE 24 9 14
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S725.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
KNDC1 MUTATED 1 3 3 1 0
KNDC1 WILD-TYPE 12 15 5 13 2
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S726.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
KNDC1 MUTATED 4 0 4
KNDC1 WILD-TYPE 17 14 15
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S727.  Gene #79: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
KNDC1 MUTATED 3 3 2
KNDC1 WILD-TYPE 27 13 6
'SEZ6L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S728.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SEZ6L2 MUTATED 2 4 0 2
SEZ6L2 WILD-TYPE 19 16 10 7
'SEZ6L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S729.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SEZ6L2 MUTATED 2 2 1 1 0
SEZ6L2 WILD-TYPE 11 6 13 12 7
'SEZ6L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S730.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
SEZ6L2 MUTATED 0 2 1 0
SEZ6L2 WILD-TYPE 8 6 5 6
'SEZ6L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S731.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
SEZ6L2 MUTATED 0 2 1 0 0 0 0 0
SEZ6L2 WILD-TYPE 5 4 4 3 3 1 3 2
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S732.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SEZ6L2 MUTATED 2 0 2 2
SEZ6L2 WILD-TYPE 14 8 12 14
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S733.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SEZ6L2 MUTATED 2 2 0 2
SEZ6L2 WILD-TYPE 14 14 4 16
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S734.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SEZ6L2 MUTATED 4 0 2
SEZ6L2 WILD-TYPE 22 11 16
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S735.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SEZ6L2 MUTATED 1 1 2 2 0
SEZ6L2 WILD-TYPE 12 17 6 12 2
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S736.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SEZ6L2 MUTATED 2 2 2
SEZ6L2 WILD-TYPE 19 12 17
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S737.  Gene #80: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SEZ6L2 MUTATED 4 1 1
SEZ6L2 WILD-TYPE 26 15 7
'VARS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S738.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
VARS MUTATED 2 2 1 1
VARS WILD-TYPE 19 18 9 8
'VARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S739.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
VARS MUTATED 0 1 3 2 0
VARS WILD-TYPE 13 7 11 11 7
'VARS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S740.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
VARS MUTATED 0 2 0 1
VARS WILD-TYPE 8 6 6 5
'VARS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S741.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
VARS MUTATED 0 1 0 0 1 0 0 1
VARS WILD-TYPE 5 5 5 3 2 1 3 1
'VARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S742.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
VARS MUTATED 1 0 4 1
VARS WILD-TYPE 15 8 10 15
'VARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 1

Table S743.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
VARS MUTATED 0 4 1 1
VARS WILD-TYPE 16 12 3 17
'VARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S744.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
VARS MUTATED 2 2 2
VARS WILD-TYPE 24 9 16
'VARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S745.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
VARS MUTATED 2 2 0 2 0
VARS WILD-TYPE 11 16 8 12 2
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S746.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
VARS MUTATED 2 1 3
VARS WILD-TYPE 19 13 16
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S747.  Gene #81: 'VARS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
VARS MUTATED 3 2 1
VARS WILD-TYPE 27 14 7
'IER5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S748.  Gene #82: 'IER5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
IER5 MUTATED 3 0 0 0
IER5 WILD-TYPE 18 20 10 9
'NMU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S749.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NMU MUTATED 1 2 1 0
NMU WILD-TYPE 20 18 9 9
'NMU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S750.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NMU MUTATED 1 1 1 1 0
NMU WILD-TYPE 12 7 13 12 7
'NMU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 1

Table S751.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NMU MUTATED 0 2 0 1
NMU WILD-TYPE 16 6 14 15
'NMU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S752.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NMU MUTATED 0 2 0 1
NMU WILD-TYPE 16 14 4 17
'NMU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NMU MUTATED 2 1 1
NMU WILD-TYPE 24 10 17
'NMU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S754.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NMU MUTATED 2 2 0 0 0
NMU WILD-TYPE 11 16 8 14 2
'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S755.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NMU MUTATED 1 1 2
NMU WILD-TYPE 20 13 17
'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S756.  Gene #83: 'NMU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NMU MUTATED 2 2 0
NMU WILD-TYPE 28 14 8
'TMEM189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S757.  Gene #84: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
TMEM189 MUTATED 3 0 0 0
TMEM189 WILD-TYPE 18 20 10 9
'ADAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S758.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ADAD2 MUTATED 2 0 1 1
ADAD2 WILD-TYPE 19 20 9 8
'ADAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S759.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ADAD2 MUTATED 0 0 2 1 1
ADAD2 WILD-TYPE 13 8 12 12 6
'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S760.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ADAD2 MUTATED 1 0 2 1
ADAD2 WILD-TYPE 15 8 12 15
'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S761.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ADAD2 MUTATED 0 2 1 1
ADAD2 WILD-TYPE 16 14 3 17
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 1

Table S762.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ADAD2 MUTATED 0 3 1
ADAD2 WILD-TYPE 26 8 17

Figure S35.  Get High-res Image Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S763.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ADAD2 MUTATED 0 3 0 1 0
ADAD2 WILD-TYPE 13 15 8 13 2
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 1

Table S764.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ADAD2 MUTATED 0 3 1
ADAD2 WILD-TYPE 21 11 18
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S765.  Gene #85: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ADAD2 MUTATED 1 2 1
ADAD2 WILD-TYPE 29 14 7
'PLEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S766.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PLEC MUTATED 4 7 1 1
PLEC WILD-TYPE 17 13 9 8
'PLEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S767.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PLEC MUTATED 2 2 1 3 2
PLEC WILD-TYPE 11 6 13 10 5
'PLEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S768.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
PLEC MUTATED 2 3 0 0
PLEC WILD-TYPE 6 5 6 6
'PLEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 1

Table S769.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
PLEC MUTATED 0 4 0 0 0 0 1 0
PLEC WILD-TYPE 5 2 5 3 3 1 2 2

Figure S36.  Get High-res Image Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S770.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PLEC MUTATED 2 0 5 3
PLEC WILD-TYPE 14 8 9 13
'PLEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S771.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PLEC MUTATED 2 4 0 4
PLEC WILD-TYPE 14 12 4 14
'PLEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S772.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PLEC MUTATED 6 2 2
PLEC WILD-TYPE 20 9 16
'PLEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S773.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PLEC MUTATED 4 2 2 2 0
PLEC WILD-TYPE 9 16 6 12 2
'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S774.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PLEC MUTATED 6 3 1
PLEC WILD-TYPE 15 11 18
'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S775.  Gene #86: 'PLEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PLEC MUTATED 7 2 1
PLEC WILD-TYPE 23 14 7
'RGMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S776.  Gene #87: 'RGMB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RGMB MUTATED 2 2 2 0
RGMB WILD-TYPE 19 18 8 9
'CLIC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S777.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CLIC6 MUTATED 2 3 0 0
CLIC6 WILD-TYPE 19 17 10 9
'CLIC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S778.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CLIC6 MUTATED 1 1 1 1 0
CLIC6 WILD-TYPE 12 7 13 12 7
'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S779.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CLIC6 MUTATED 2 1 0 1
CLIC6 WILD-TYPE 14 7 14 15
'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S780.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CLIC6 MUTATED 2 1 1 0
CLIC6 WILD-TYPE 14 15 3 18
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S781.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CLIC6 MUTATED 2 2 0
CLIC6 WILD-TYPE 24 9 18
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S782.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CLIC6 MUTATED 0 1 1 2 0
CLIC6 WILD-TYPE 13 17 7 12 2
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S783.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CLIC6 MUTATED 2 2 0
CLIC6 WILD-TYPE 19 12 19
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S784.  Gene #88: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CLIC6 MUTATED 3 1 0
CLIC6 WILD-TYPE 27 15 8
'ZNF814 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S785.  Gene #89: 'ZNF814 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ZNF814 MUTATED 1 1 1 0
ZNF814 WILD-TYPE 20 19 9 9
'DSPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S786.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
DSPP MUTATED 4 4 1 0
DSPP WILD-TYPE 17 16 9 9
'DSPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 1

Table S787.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
DSPP MUTATED 1 4 1 3 0
DSPP WILD-TYPE 12 4 13 10 7
'DSPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S788.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
DSPP MUTATED 1 2 0 1
DSPP WILD-TYPE 7 6 6 5
'DSPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S789.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
DSPP MUTATED 1 1 0 1 0 0 0 1
DSPP WILD-TYPE 4 5 5 2 3 1 3 1
'DSPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S790.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
DSPP MUTATED 3 1 2 3
DSPP WILD-TYPE 13 7 12 13
'DSPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S791.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
DSPP MUTATED 4 1 1 3
DSPP WILD-TYPE 12 15 3 15
'DSPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S792.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
DSPP MUTATED 3 3 3
DSPP WILD-TYPE 23 8 15
'DSPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S793.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
DSPP MUTATED 1 4 1 2 1
DSPP WILD-TYPE 12 14 7 12 1
'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S794.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
DSPP MUTATED 3 3 3
DSPP WILD-TYPE 18 11 16
'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S795.  Gene #90: 'DSPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
DSPP MUTATED 5 3 1
DSPP WILD-TYPE 25 13 7
'AMDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S796.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
AMDHD1 MUTATED 5 2 1 2
AMDHD1 WILD-TYPE 16 18 9 7
'AMDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S797.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
AMDHD1 MUTATED 1 1 4 2 1
AMDHD1 WILD-TYPE 12 7 10 11 6
'AMDHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S798.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
AMDHD1 MUTATED 1 1 0 1
AMDHD1 WILD-TYPE 7 7 6 5
'AMDHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S799.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
AMDHD1 MUTATED 1 0 0 0 1 0 0 1
AMDHD1 WILD-TYPE 4 6 5 3 2 1 3 1
'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S800.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
AMDHD1 MUTATED 3 2 3 1
AMDHD1 WILD-TYPE 13 6 11 15
'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S801.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
AMDHD1 MUTATED 1 4 2 2
AMDHD1 WILD-TYPE 15 12 2 16
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S802.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
AMDHD1 MUTATED 3 4 2
AMDHD1 WILD-TYPE 23 7 16
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S803.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
AMDHD1 MUTATED 1 4 1 3 0
AMDHD1 WILD-TYPE 12 14 7 11 2
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S804.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
AMDHD1 MUTATED 3 2 4
AMDHD1 WILD-TYPE 18 12 15
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S805.  Gene #91: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
AMDHD1 MUTATED 4 3 2
AMDHD1 WILD-TYPE 26 13 6
'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S806.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CRIPAK MUTATED 2 4 1 3
CRIPAK WILD-TYPE 19 16 9 6
'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S807.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CRIPAK MUTATED 2 1 2 2 2
CRIPAK WILD-TYPE 11 7 12 11 5
'CRIPAK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S808.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
CRIPAK MUTATED 1 2 1 0
CRIPAK WILD-TYPE 7 6 5 6
'CRIPAK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S809.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
CRIPAK MUTATED 1 2 1 0 0 0 0 0
CRIPAK WILD-TYPE 4 4 4 3 3 1 3 2
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S810.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CRIPAK MUTATED 2 0 3 4
CRIPAK WILD-TYPE 14 8 11 12
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S811.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CRIPAK MUTATED 2 2 1 4
CRIPAK WILD-TYPE 14 14 3 14
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S812.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CRIPAK MUTATED 5 1 3
CRIPAK WILD-TYPE 21 10 15
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S813.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CRIPAK MUTATED 1 4 3 1 0
CRIPAK WILD-TYPE 12 14 5 13 2
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S814.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CRIPAK MUTATED 5 1 3
CRIPAK WILD-TYPE 16 13 16
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S815.  Gene #92: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CRIPAK MUTATED 5 4 0
CRIPAK WILD-TYPE 25 12 8
'NOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S816.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NOM1 MUTATED 2 2 1 1
NOM1 WILD-TYPE 19 18 9 8
'NOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S817.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NOM1 MUTATED 1 1 1 0 2
NOM1 WILD-TYPE 12 7 13 13 5
'NOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S818.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NOM1 MUTATED 2 0 1 2
NOM1 WILD-TYPE 14 8 13 14
'NOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S819.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NOM1 MUTATED 2 1 0 2
NOM1 WILD-TYPE 14 15 4 16
'NOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S820.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NOM1 MUTATED 2 1 2
NOM1 WILD-TYPE 24 10 16
'NOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S821.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NOM1 MUTATED 2 1 1 1 0
NOM1 WILD-TYPE 11 17 7 13 2
'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S822.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NOM1 MUTATED 3 0 2
NOM1 WILD-TYPE 18 14 17
'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S823.  Gene #93: 'NOM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NOM1 MUTATED 3 1 1
NOM1 WILD-TYPE 27 15 7
'MAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S824.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
MAP7 MUTATED 2 1 0 0
MAP7 WILD-TYPE 19 19 10 9
'MAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S825.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
MAP7 MUTATED 1 0 0 1 1
MAP7 WILD-TYPE 12 8 14 12 6
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S826.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
MAP7 MUTATED 1 0 1 1
MAP7 WILD-TYPE 15 8 13 15
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S827.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
MAP7 MUTATED 1 0 0 2
MAP7 WILD-TYPE 15 16 4 16
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S828.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
MAP7 MUTATED 1 0 2
MAP7 WILD-TYPE 25 11 16
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S829.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
MAP7 MUTATED 0 1 1 1 0
MAP7 WILD-TYPE 13 17 7 13 2
'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S830.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
MAP7 MUTATED 1 1 1
MAP7 WILD-TYPE 20 13 18
'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S831.  Gene #94: 'MAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
MAP7 MUTATED 1 1 1
MAP7 WILD-TYPE 29 15 7
'PTX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S832.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PTX4 MUTATED 1 1 1 0
PTX4 WILD-TYPE 20 19 9 9
'PTX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S833.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PTX4 MUTATED 1 0 1 1 0
PTX4 WILD-TYPE 12 8 13 12 7
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S834.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PTX4 MUTATED 2 0 1 0
PTX4 WILD-TYPE 14 8 13 16
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S835.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PTX4 MUTATED 1 1 1 0
PTX4 WILD-TYPE 15 15 3 18
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S836.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PTX4 MUTATED 2 1 0
PTX4 WILD-TYPE 24 10 18
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S837.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PTX4 MUTATED 1 1 0 1 0
PTX4 WILD-TYPE 12 17 8 13 2
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S838.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PTX4 MUTATED 1 2 0
PTX4 WILD-TYPE 20 12 19
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S839.  Gene #95: 'PTX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PTX4 MUTATED 2 0 1
PTX4 WILD-TYPE 28 16 7
'LRP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S840.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
LRP11 MUTATED 2 2 1 0
LRP11 WILD-TYPE 19 18 9 9
'LRP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 1

Table S841.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
LRP11 MUTATED 1 0 4 0 0
LRP11 WILD-TYPE 12 8 10 13 7
'LRP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S842.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
LRP11 MUTATED 1 1 2 1
LRP11 WILD-TYPE 15 7 12 15
'LRP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S843.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
LRP11 MUTATED 1 3 0 1
LRP11 WILD-TYPE 15 13 4 17
'LRP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S844.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
LRP11 MUTATED 2 2 1
LRP11 WILD-TYPE 24 9 17
'LRP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S845.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
LRP11 MUTATED 1 2 0 2 0
LRP11 WILD-TYPE 12 16 8 12 2
'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S846.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
LRP11 MUTATED 2 2 1
LRP11 WILD-TYPE 19 12 18
'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S847.  Gene #96: 'LRP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
LRP11 MUTATED 3 2 0
LRP11 WILD-TYPE 27 14 8
'PDCD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S848.  Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PDCD6 MUTATED 0 1 1 1
PDCD6 WILD-TYPE 21 19 9 8
'PDCD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S849.  Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PDCD6 MUTATED 1 0 0 1 1
PDCD6 WILD-TYPE 12 8 14 12 6
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S850.  Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PDCD6 MUTATED 2 0 1
PDCD6 WILD-TYPE 24 11 17
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S851.  Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PDCD6 MUTATED 1 1 1 0 0
PDCD6 WILD-TYPE 12 17 7 14 2
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S852.  Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PDCD6 MUTATED 1 1 1
PDCD6 WILD-TYPE 20 13 18
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S853.  Gene #97: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PDCD6 MUTATED 2 1 0
PDCD6 WILD-TYPE 28 15 8
'SHOX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S854.  Gene #98: 'SHOX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SHOX2 MUTATED 2 0 0 1
SHOX2 WILD-TYPE 19 20 10 8
'UQCRFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S855.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
UQCRFS1 MUTATED 1 1 1 1
UQCRFS1 WILD-TYPE 20 19 9 8
'UQCRFS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S856.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
UQCRFS1 MUTATED 2 1 2 0 0
UQCRFS1 WILD-TYPE 11 7 12 13 7
'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S857.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
UQCRFS1 MUTATED 1 1 1 1
UQCRFS1 WILD-TYPE 15 7 13 15
'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S858.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
UQCRFS1 MUTATED 1 2 0 1
UQCRFS1 WILD-TYPE 15 14 4 17
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S859.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
UQCRFS1 MUTATED 4 0 1
UQCRFS1 WILD-TYPE 22 11 17
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S860.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
UQCRFS1 MUTATED 3 0 1 1 0
UQCRFS1 WILD-TYPE 10 18 7 13 2
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S861.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
UQCRFS1 MUTATED 2 2 1
UQCRFS1 WILD-TYPE 19 12 18
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S862.  Gene #99: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
UQCRFS1 MUTATED 4 0 1
UQCRFS1 WILD-TYPE 26 16 7
'CTBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S863.  Gene #100: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CTBP2 MUTATED 1 2 0 0
CTBP2 WILD-TYPE 20 18 10 9
'PRKAR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S864.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PRKAR1A MUTATED 2 1 2 1
PRKAR1A WILD-TYPE 19 19 8 8
'PRKAR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S865.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PRKAR1A MUTATED 1 1 2 1 1
PRKAR1A WILD-TYPE 12 7 12 12 6
'PRKAR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S866.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
PRKAR1A MUTATED 1 2 0 1
PRKAR1A WILD-TYPE 7 6 6 5
'PRKAR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S867.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
PRKAR1A MUTATED 1 2 0 0 1 0 0 0
PRKAR1A WILD-TYPE 4 4 5 3 2 1 3 2
'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S868.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PRKAR1A MUTATED 2 1 3 0
PRKAR1A WILD-TYPE 14 7 11 16
'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S869.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PRKAR1A MUTATED 1 3 1 1
PRKAR1A WILD-TYPE 15 13 3 17
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S870.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 21 10 18
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S871.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PRKAR1A MUTATED 3 1 1 1 0
PRKAR1A WILD-TYPE 10 17 7 13 2
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 1

Table S872.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 16 13 19

Figure S37.  Get High-res Image Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S873.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 25 15 8
'JMJD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S874.  Gene #102: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
JMJD4 MUTATED 1 1 1 0
JMJD4 WILD-TYPE 20 19 9 9
'HSD17B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S875.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
HSD17B1 MUTATED 2 2 0 0
HSD17B1 WILD-TYPE 19 18 10 9
'HSD17B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 1

Table S876.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
HSD17B1 MUTATED 0 0 0 3 1
HSD17B1 WILD-TYPE 13 8 14 10 6

Figure S38.  Get High-res Image Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSD17B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S877.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
HSD17B1 MUTATED 1 0 1 1
HSD17B1 WILD-TYPE 7 8 5 5
'HSD17B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S878.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
HSD17B1 MUTATED 0 0 1 0 1 0 1 0
HSD17B1 WILD-TYPE 5 6 4 3 2 1 2 2
'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S879.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
HSD17B1 MUTATED 2 0 1 1
HSD17B1 WILD-TYPE 14 8 13 15
'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0082 (Fisher's exact test), Q value = 1

Table S880.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
HSD17B1 MUTATED 0 0 2 2
HSD17B1 WILD-TYPE 16 16 2 16

Figure S39.  Get High-res Image Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S881.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
HSD17B1 MUTATED 2 1 1
HSD17B1 WILD-TYPE 24 10 17
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S882.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
HSD17B1 MUTATED 1 1 0 2 0
HSD17B1 WILD-TYPE 12 17 8 12 2
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S883.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
HSD17B1 MUTATED 2 0 2
HSD17B1 WILD-TYPE 19 14 17
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S884.  Gene #103: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
HSD17B1 MUTATED 2 1 1
HSD17B1 WILD-TYPE 28 15 7
'COQ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S885.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
COQ2 MUTATED 1 1 1 2
COQ2 WILD-TYPE 20 19 9 7
'COQ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S886.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
COQ2 MUTATED 0 1 1 1 1
COQ2 WILD-TYPE 13 7 13 12 6
'COQ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S887.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
COQ2 MUTATED 0 1 2 1
COQ2 WILD-TYPE 16 7 12 15
'COQ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S888.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
COQ2 MUTATED 0 2 0 2
COQ2 WILD-TYPE 16 14 4 16
'COQ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S889.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
COQ2 MUTATED 2 1 1
COQ2 WILD-TYPE 24 10 17
'COQ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S890.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
COQ2 MUTATED 1 2 1 0 0
COQ2 WILD-TYPE 12 16 7 14 2
'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S891.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
COQ2 MUTATED 2 0 2
COQ2 WILD-TYPE 19 14 17
'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S892.  Gene #104: 'COQ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
COQ2 MUTATED 2 2 0
COQ2 WILD-TYPE 28 14 8
'FEZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S893.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
FEZ2 MUTATED 0 2 1 0
FEZ2 WILD-TYPE 21 18 9 9
'FEZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S894.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
FEZ2 MUTATED 0 1 1 0 1
FEZ2 WILD-TYPE 13 7 13 13 6
'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S895.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
FEZ2 MUTATED 0 1 0 2
FEZ2 WILD-TYPE 16 7 14 14
'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S896.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
FEZ2 MUTATED 1 0 0 2
FEZ2 WILD-TYPE 15 16 4 16
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S897.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
FEZ2 MUTATED 0 1 2
FEZ2 WILD-TYPE 26 10 16
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S898.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
FEZ2 MUTATED 0 1 1 1 0
FEZ2 WILD-TYPE 13 17 7 13 2
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S899.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
FEZ2 MUTATED 2 0 1
FEZ2 WILD-TYPE 19 14 18
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S900.  Gene #105: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
FEZ2 MUTATED 1 1 1
FEZ2 WILD-TYPE 29 15 7
'DLEU7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S901.  Gene #106: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
DLEU7 MUTATED 2 0 1 0
DLEU7 WILD-TYPE 19 20 9 9
'RNF135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S902.  Gene #107: 'RNF135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
RNF135 MUTATED 1 2 0 0
RNF135 WILD-TYPE 20 18 10 9
'SPIRE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S903.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SPIRE2 MUTATED 0 1 1 1
SPIRE2 WILD-TYPE 21 19 9 8
'SPIRE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S904.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
SPIRE2 MUTATED 1 0 0 0 2
SPIRE2 WILD-TYPE 12 8 14 13 5

Figure S40.  Get High-res Image Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S905.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
SPIRE2 MUTATED 1 0 1 1
SPIRE2 WILD-TYPE 15 8 13 15
'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S906.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
SPIRE2 MUTATED 1 0 0 2
SPIRE2 WILD-TYPE 15 16 4 16
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S907.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
SPIRE2 MUTATED 2 0 1
SPIRE2 WILD-TYPE 24 11 17
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S908.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
SPIRE2 MUTATED 0 1 1 1 0
SPIRE2 WILD-TYPE 13 17 7 13 2
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S909.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
SPIRE2 MUTATED 1 1 1
SPIRE2 WILD-TYPE 20 13 18
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S910.  Gene #108: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
SPIRE2 MUTATED 2 1 0
SPIRE2 WILD-TYPE 28 15 8
'KRTAP5-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S911.  Gene #109: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KRTAP5-5 MUTATED 1 1 1 0
KRTAP5-5 WILD-TYPE 20 19 9 9
'SGK223 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S912.  Gene #110: 'SGK223 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
SGK223 MUTATED 1 2 0 0
SGK223 WILD-TYPE 20 18 10 9
'C9ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S913.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
C9ORF66 MUTATED 2 2 1 0
C9ORF66 WILD-TYPE 19 18 9 9
'C9ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S914.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
C9ORF66 MUTATED 1 1 1 2 0
C9ORF66 WILD-TYPE 12 7 13 11 7
'C9ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S915.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
C9ORF66 MUTATED 2 1 1 1
C9ORF66 WILD-TYPE 14 7 13 15
'C9ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S916.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
C9ORF66 MUTATED 1 2 1 1
C9ORF66 WILD-TYPE 15 14 3 17
'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S917.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
C9ORF66 MUTATED 2 2 1
C9ORF66 WILD-TYPE 24 9 17
'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S918.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
C9ORF66 MUTATED 1 2 0 2 0
C9ORF66 WILD-TYPE 12 16 8 12 2
'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S919.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
C9ORF66 MUTATED 2 0 3
C9ORF66 WILD-TYPE 19 14 16
'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S920.  Gene #111: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
C9ORF66 MUTATED 2 2 1
C9ORF66 WILD-TYPE 28 14 7
'AQP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S921.  Gene #112: 'AQP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
AQP7 MUTATED 1 2 0 0
AQP7 WILD-TYPE 20 18 10 9
'ADAMTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S922.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
ADAMTS7 MUTATED 0 3 0 1
ADAMTS7 WILD-TYPE 21 17 10 8
'ADAMTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S923.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
ADAMTS7 MUTATED 0 0 1 2 1
ADAMTS7 WILD-TYPE 13 8 13 11 6
'ADAMTS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 1

Table S924.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 8 8 6 6
ADAMTS7 MUTATED 0 0 0 3
ADAMTS7 WILD-TYPE 8 8 6 3

Figure S41.  Get High-res Image Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADAMTS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S925.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 5 6 5 3 3 1 3 2
ADAMTS7 MUTATED 0 0 2 0 1 0 0 0
ADAMTS7 WILD-TYPE 5 6 3 3 2 1 3 2
'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S926.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
ADAMTS7 MUTATED 0 1 0 3
ADAMTS7 WILD-TYPE 16 7 14 13
'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S927.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
ADAMTS7 MUTATED 0 1 0 3
ADAMTS7 WILD-TYPE 16 15 4 15
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 1

Table S928.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
ADAMTS7 MUTATED 0 1 3
ADAMTS7 WILD-TYPE 26 10 15
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S929.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
ADAMTS7 MUTATED 0 3 1 0 0
ADAMTS7 WILD-TYPE 13 15 7 14 2
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S930.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
ADAMTS7 MUTATED 0 1 3
ADAMTS7 WILD-TYPE 21 13 16
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 1

Table S931.  Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
ADAMTS7 MUTATED 0 3 1
ADAMTS7 WILD-TYPE 30 13 7

Figure S42.  Get High-res Image Gene #113: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCDHB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S932.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
PCDHB13 MUTATED 1 1 2 1
PCDHB13 WILD-TYPE 20 19 8 8
'PCDHB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S933.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
PCDHB13 MUTATED 0 1 3 0 0
PCDHB13 WILD-TYPE 13 7 11 13 7
'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S934.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
PCDHB13 MUTATED 0 0 3 1
PCDHB13 WILD-TYPE 16 8 11 15
'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S935.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
PCDHB13 MUTATED 0 3 0 1
PCDHB13 WILD-TYPE 16 13 4 17
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S936.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 23 11 17
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 1

Table S937.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
PCDHB13 MUTATED 3 0 1 0 0
PCDHB13 WILD-TYPE 10 18 7 14 2
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S938.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 18 14 18
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S939.  Gene #114: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 27 16 7
'CSGALNACT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S940.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
CSGALNACT2 MUTATED 0 3 0 0
CSGALNACT2 WILD-TYPE 21 17 10 9
'CSGALNACT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 1

Table S941.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
CSGALNACT2 MUTATED 1 0 0 0 2
CSGALNACT2 WILD-TYPE 12 8 14 13 5

Figure S43.  Get High-res Image Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S942.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
CSGALNACT2 MUTATED 1 0 0 2
CSGALNACT2 WILD-TYPE 15 8 14 14
'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S943.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
CSGALNACT2 MUTATED 1 0 0 2
CSGALNACT2 WILD-TYPE 15 16 4 16
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S944.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
CSGALNACT2 MUTATED 1 0 2
CSGALNACT2 WILD-TYPE 25 11 16
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S945.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
CSGALNACT2 MUTATED 0 2 0 1 0
CSGALNACT2 WILD-TYPE 13 16 8 13 2
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S946.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
CSGALNACT2 MUTATED 0 1 2
CSGALNACT2 WILD-TYPE 21 13 17
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S947.  Gene #115: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
CSGALNACT2 MUTATED 1 2 0
CSGALNACT2 WILD-TYPE 29 14 8
'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S948.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
HLA-A MUTATED 2 1 0 0
HLA-A WILD-TYPE 19 19 10 9
'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S949.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
HLA-A MUTATED 1 0 1 1 0
HLA-A WILD-TYPE 12 8 13 12 7
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S950.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
HLA-A MUTATED 1 1 0 1
HLA-A WILD-TYPE 15 7 14 15
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S951.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
HLA-A MUTATED 1 1 1 0
HLA-A WILD-TYPE 15 15 3 18
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S952.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 24 11 17
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S953.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
HLA-A MUTATED 1 0 1 1 0
HLA-A WILD-TYPE 12 18 7 13 2
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S954.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 19 14 18
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S955.  Gene #116: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 28 16 7
'MTFMT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S956.  Gene #117: 'MTFMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
MTFMT MUTATED 2 1 0 0
MTFMT WILD-TYPE 19 19 10 9
'NLRP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S957.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
NLRP5 MUTATED 2 2 0 0
NLRP5 WILD-TYPE 19 18 10 9
'NLRP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S958.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
NLRP5 MUTATED 0 0 0 2 1
NLRP5 WILD-TYPE 13 8 14 11 6
'NLRP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S959.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
NLRP5 MUTATED 1 0 1 1
NLRP5 WILD-TYPE 15 8 13 15
'NLRP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S960.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
NLRP5 MUTATED 0 0 1 2
NLRP5 WILD-TYPE 16 16 3 16
'NLRP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S961.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
NLRP5 MUTATED 1 1 1
NLRP5 WILD-TYPE 25 10 17
'NLRP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S962.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
NLRP5 MUTATED 1 1 1 0 0
NLRP5 WILD-TYPE 12 17 7 14 2
'NLRP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S963.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
NLRP5 MUTATED 1 1 1
NLRP5 WILD-TYPE 20 13 18
'NLRP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.076 (Fisher's exact test), Q value = 1

Table S964.  Gene #118: 'NLRP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
NLRP5 MUTATED 1 0 2
NLRP5 WILD-TYPE 29 16 6
'KCNJ11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S965.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 21 20 10 9
KCNJ11 MUTATED 0 1 3 0
KCNJ11 WILD-TYPE 21 19 7 9

Figure S44.  Get High-res Image Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S966.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 13 7
KCNJ11 MUTATED 1 1 2 0 0
KCNJ11 WILD-TYPE 12 7 12 13 7
'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S967.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 8 14 16
KCNJ11 MUTATED 1 1 2 0
KCNJ11 WILD-TYPE 15 7 12 16
'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S968.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 4 18
KCNJ11 MUTATED 1 3 0 0
KCNJ11 WILD-TYPE 15 13 4 18
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S969.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 11 18
KCNJ11 MUTATED 4 0 0
KCNJ11 WILD-TYPE 22 11 18
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 1

Table S970.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 18 8 14 2
KCNJ11 MUTATED 2 0 0 1 1
KCNJ11 WILD-TYPE 11 18 8 13 1
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S971.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 21 14 19
KCNJ11 MUTATED 2 2 0
KCNJ11 WILD-TYPE 19 12 19
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S972.  Gene #119: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 30 16 8
KCNJ11 MUTATED 4 0 0
KCNJ11 WILD-TYPE 26 16 8
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = ACC-TP.transferedmergedcluster.txt

  • Number of patients = 62

  • Number of significantly mutated genes = 119

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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