		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	4 (4%)	86	0.18302	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
1q gain	8 (9%)	82	0.04301	1	0.65806	1	0.20165	1	0.55927	1	0.04593	1	0.078999	1	0.064629	1	0.24148	1	0.14668	1	0.84959	1
2p gain	13 (14%)	77	0.0073799	1	0.00142	0.949	0.59614	1	0.34033	1	0.01208	1	0.00025	0.173	0.37493	1	0.01907	1	0.1253	1	0.074129	1
2q gain	12 (13%)	78	0.052199	1	0.00249	1	0.42079	1	0.17586	1	0.01898	1	0.0026	1	0.056179	1	0.00489	1	0.02079	1	0.02428	1
3p gain	13 (14%)	77	0.2863	1	0.069049	1	0.45022	1	0.88279	1	0.33156	1	0.36497	1	0.40879	1	0.10928	1	0.63408	1	0.38771	1
3q gain	15 (17%)	75	0.39751	1	0.050789	1	0.89254	1	0.82224	1	0.052959	1	0.79247	1	0.65178	1	0.24579	1	0.67871	1	0.7113	1
4p gain	37 (41%)	53	9.9999e-06	0.00736	0.04437	1	1	1	0.46394	1	2e-05	0.0144	4e-05	0.0284	0.29697	1	0.00236	1	0.34303	1	0.8607	1
4q gain	33 (37%)	57	2e-05	0.0144	0.03672	1	0.92676	1	0.7293	1	3e-05	0.0214	2e-05	0.0144	0.55659	1	0.00079999	0.542	0.36071	1	0.94952	1
5p gain	57 (63%)	33	9.9999e-06	0.00736	0.03764	1	0.0459	1	0.03456	1	0.00050999	0.349	2e-05	0.0144	0.25201	1	0.22798	1	0.072359	1	0.35693	1
5q gain	53 (59%)	37	9.9999e-06	0.00736	0.0085099	1	0.41871	1	0.14781	1	0.00062999	0.428	9.9999e-06	0.00736	0.3363	1	0.13436	1	0.20911	1	0.16916	1
6p gain	18 (20%)	72	0.01713	1	0.68336	1	1	1	0.87591	1	0.066729	1	0.47198	1	0.16173	1	0.054959	1	0.41863	1	0.23618	1
6q gain	16 (18%)	74	0.073229	1	0.45768	1	0.60744	1	0.68497	1	0.20022	1	0.2932	1	0.29832	1	0.19652	1	0.15033	1	0.4358	1
7p gain	48 (53%)	42	5e-05	0.0355	0.11919	1	0.13904	1	0.092909	1	0.00011	0.077	0.00165	1	0.91506	1	0.55127	1	0.27846	1	0.28825	1
7q gain	48 (53%)	42	9.9999e-06	0.00736	0.11694	1	0.13921	1	0.24668	1	9.9999e-06	0.00736	7.9999e-05	0.0563	0.91544	1	0.32792	1	0.27739	1	0.19378	1
8p gain	32 (36%)	58	8.9999e-05	0.0632	0.14039	1	0.51718	1	0.4411	1	0.1698	1	0.14681	1	0.11224	1	0.17152	1	0.24156	1	0.51657	1
8q gain	38 (42%)	52	0.00022	0.152	0.29083	1	0.72263	1	0.46798	1	0.41765	1	0.22933	1	0.4992	1	0.25848	1	0.51984	1	0.6418	1
9p gain	20 (22%)	70	5.9999e-05	0.0425	0.00218	1	0.087789	1	0.13588	1	0.0090799	1	0.01179	1	0.38248	1	0.54886	1	0.46111	1	0.25169	1
9q gain	29 (32%)	61	0.00043	0.295	0.0011	0.737	0.03861	1	0.070309	1	0.02359	1	0.00206	1	0.03473	1	0.35327	1	0.089409	1	0.083089	1
10p gain	25 (28%)	65	0.0019	1	0.059719	1	0.01928	1	0.01369	1	6.9999e-05	0.0494	0.00014	0.0976	0.0343	1	0.50545	1	0.057269	1	0.4536	1
10q gain	26 (29%)	64	0.00147	0.979	0.071179	1	0.01721	1	0.01452	1	9.9999e-06	0.00736	0.00055999	0.381	0.02001	1	0.34279	1	0.03105	1	0.84428	1
11p gain	5 (6%)	85	0.091709	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
11q gain	6 (7%)	84	0.12565	1	0.17743	1	0.20067	1	0.4836	1	0.04439	1	0.079389	1	0.18605	1	0.36808	1	0.0054399	1	0.38974	1
12p gain	64 (71%)	26	9.9999e-06	0.00736	0.20862	1	0.20414	1	0.066769	1	0.00011	0.077	6.9999e-05	0.0494	0.24309	1	0.20917	1	0.13042	1	0.25019	1
12q gain	64 (71%)	26	9.9999e-06	0.00736	0.30771	1	0.15054	1	0.02796	1	0.00049	0.336	0.00021	0.146	0.23635	1	0.45454	1	0.22015	1	0.59116	1
13q gain	6 (7%)	84	0.4032	1	0.46349	1	0.49672	1	0.72429	1	0.03915	1	0.63419	1	0.14084	1	0.91627	1	0.18536	1	0.70041	1
14q gain	21 (23%)	69	0.01424	1	0.056079	1	0.10428	1	0.42664	1	0.00031	0.214	0.00105	0.706	9.9999e-06	0.00736	0.00017	0.118	3e-05	0.0214	2e-05	0.0144
15q gain	11 (12%)	79	0.094129	1	0.04727	1	0.44506	1	0.84531	1	0.01077	1	0.00472	1	0.35956	1	0.00069999	0.475	0.50587	1	0.25672	1
16p gain	49 (54%)	41	9.9999e-06	0.00736	0.01073	1	0.89424	1	0.04007	1	9.9999e-06	0.00736	9.9999e-06	0.00736	0.04639	1	0.02611	1	0.02845	1	0.27636	1
16q gain	47 (52%)	43	9.9999e-06	0.00736	0.0077799	1	0.95356	1	0.32654	1	7.9999e-05	0.0563	9.9999e-06	0.00736	0.02463	1	0.01287	1	0.01391	1	0.46199	1
17p gain	5 (6%)	85	0.11169	1	0.33566	1	NA	NA	NA	NA	0.68582	1	0.14368	1	0.20763	1	0.79504	1	0.059489	1	0.062019	1
17q gain	7 (8%)	83	0.02491	1	0.33759	1	NA	NA	NA	NA	0.68844	1	0.14206	1	0.20737	1	0.79416	1	0.059709	1	0.061729	1
18p gain	6 (7%)	84	0.26009	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
18q gain	5 (6%)	85	0.49284	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
19p gain	56 (62%)	34	0.00387	1	0.054639	1	0.061709	1	0.01905	1	0.00103	0.693	0.00050999	0.349	0.46593	1	0.47122	1	0.6394	1	0.22062	1
19q gain	52 (58%)	38	5e-05	0.0355	0.051769	1	0.29472	1	0.055779	1	0.00031	0.214	0.00096999	0.656	0.14264	1	0.1112	1	0.5171	1	0.11911	1
20p gain	46 (51%)	44	9.9999e-06	0.00736	0.23375	1	0.02277	1	0.0085099	1	0.00016	0.111	0.00011	0.077	0.00475	1	0.089269	1	0.0094999	1	0.00428	1
20q gain	49 (54%)	41	9.9999e-06	0.00736	0.066849	1	0.0098099	1	0.078019	1	5.9999e-05	0.0425	0.00029	0.2	0.01969	1	0.27689	1	0.01136	1	0.01457	1
21q gain	31 (34%)	59	0.02052	1	0.0090899	1	0.060039	1	0.23283	1	0.01995	1	0.00097999	0.661	0.0138	1	0.02002	1	0.00288	1	0.082889	1
22q gain	3 (3%)	87	0.63443	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
xq gain	40 (44%)	50	2e-05	0.0144	0.16533	1	0.28254	1	0.04306	1	0.00136	0.91	0.0086999	1	0.79646	1	0.15172	1	0.34277	1	0.13923	1
1p loss	29 (32%)	61	0.11735	1	0.14108	1	0.94902	1	0.12848	1	0.43828	1	0.064479	1	0.46677	1	0.41	1	0.02784	1	0.94802	1
1q loss	20 (22%)	70	0.20367	1	0.090409	1	0.51845	1	0.02566	1	0.96083	1	0.59729	1	0.37014	1	0.8414	1	0.078259	1	0.48975	1
2p loss	17 (19%)	73	0.0067599	1	0.02765	1	0.83553	1	0.65861	1	0.61541	1	0.26805	1	0.03852	1	0.76912	1	0.22849	1	0.699	1
2q loss	15 (17%)	75	0.00498	1	0.00109	0.731	0.73425	1	0.88457	1	0.11442	1	0.052479	1	0.03153	1	0.72786	1	0.069269	1	0.53656	1
3p loss	20 (22%)	70	0.25588	1	0.14173	1	0.2305	1	0.28979	1	0.11146	1	0.13655	1	0.5256	1	0.3879	1	0.68487	1	0.31551	1
3q loss	20 (22%)	70	0.16663	1	0.16471	1	0.53349	1	0.60267	1	0.02206	1	0.02989	1	0.19142	1	0.34065	1	0.31373	1	0.11675	1
4p loss	10 (11%)	80	0.095529	1	0.23292	1	1	1	0.98949	1	0.02374	1	0.081479	1	0.30696	1	0.93038	1	0.051309	1	1	1
4q loss	11 (12%)	79	0.23682	1	0.093459	1	0.8794	1	0.92341	1	0.0072999	1	0.02746	1	0.24788	1	0.81139	1	0.01299	1	0.90239	1
5p loss	8 (9%)	82	0.28664	1	0.052389	1	0.69487	1	0.19236	1	0.23066	1	0.01019	1	0.77417	1	0.2989	1	0.6954	1	1	1
5q loss	7 (8%)	83	0.89886	1	0.65432	1	NA	NA	NA	NA	0.27555	1	0.13287	1	0.65797	1	0.12492	1	0.65956	1	0.84899	1
6p loss	19 (21%)	71	0.1455	1	0.85302	1	0.57339	1	0.23148	1	0.61965	1	0.69205	1	0.62724	1	0.099009	1	0.72612	1	0.52774	1
6q loss	22 (24%)	68	0.061519	1	0.85994	1	0.56848	1	0.27392	1	0.63299	1	0.69194	1	0.73102	1	0.17293	1	0.55773	1	0.32252	1
7p loss	5 (6%)	85	0.39142	1	0.58513	1	0.53202	1	0.20389	1	0.90928	1	0.8915	1	0.81568	1	0.41411	1	0.83233	1	0.11422	1
7q loss	6 (7%)	84	0.31551	1	0.30313	1	0.68506	1	0.77911	1	0.61849	1	0.65553	1	1	1	0.23563	1	0.73308	1	0.15034	1
8p loss	16 (18%)	74	0.0054599	1	0.22328	1	0.10378	1	0.00063999	0.435	0.18214	1	0.14113	1	0.18118	1	0.02312	1	0.2544	1	0.02966	1
8q loss	12 (13%)	78	0.00444	1	0.086599	1	0.40892	1	0.03592	1	0.03405	1	0.12275	1	0.076949	1	0.03569	1	0.17998	1	0.03783	1
9p loss	20 (22%)	70	0.00171	1	0.04803	1	0.55357	1	0.1166	1	9.9999e-05	0.0701	0.00099999	0.674	0.0090099	1	0.1389	1	0.00476	1	0.93757	1
9q loss	11 (12%)	79	0.32332	1	0.9359	1	1	1	0.03704	1	0.081179	1	0.32095	1	0.55712	1	0.49652	1	0.21427	1	0.80612	1
10p loss	12 (13%)	78	0.22267	1	0.42668	1	1	1	0.055489	1	0.26547	1	1	1	0.68246	1	0.7069	1	1	1	0.32598	1
10q loss	10 (11%)	80	0.53536	1	0.62485	1	1	1	0.23753	1	0.53305	1	1	1	1	1	0.70716	1	1	1	0.28811	1
11p loss	24 (27%)	66	0.0064399	1	0.0179	1	0.96483	1	0.79859	1	0.21832	1	0.18961	1	0.28053	1	0.89208	1	0.69023	1	1	1
11q loss	23 (26%)	67	0.01191	1	0.0029	1	0.83655	1	0.39577	1	0.13659	1	0.12786	1	0.10558	1	0.82611	1	0.49066	1	0.78054	1
12p loss	5 (6%)	85	0.090689	1	0.25227	1	0.25402	1	0.082579	1	0.62112	1	0.03807	1	0.10341	1	0.51867	1	0.43118	1	0.14948	1
12q loss	4 (4%)	86	0.18306	1	0.04784	1	0.25682	1	0.083709	1	0.44264	1	0.0093599	1	0.3322	1	0.23914	1	0.67489	1	0.11416	1
13q loss	39 (43%)	51	0.01443	1	0.082599	1	0.88452	1	0.94296	1	0.6255	1	0.88584	1	0.75167	1	0.30589	1	0.61379	1	0.49139	1
14q loss	18 (20%)	72	0.02752	1	0.44378	1	0.24876	1	0.053149	1	0.01817	1	0.04744	1	0.4085	1	0.53001	1	0.21475	1	0.14674	1
15q loss	21 (23%)	69	0.081769	1	0.41631	1	0.55405	1	0.51142	1	0.10961	1	0.22532	1	0.60566	1	0.04114	1	0.2888	1	0.87563	1
16p loss	6 (7%)	84	0.1249	1	0.04978	1	0.13817	1	0.04736	1	0.00215	1	0.00426	1	0.01325	1	0.44313	1	4e-04	0.275	0.46682	1
16q loss	5 (6%)	85	0.21503	1	0.077709	1	0.19609	1	0.17803	1	0.057969	1	0.084829	1	0.16833	1	0.30523	1	0.00145	0.967	0.70213	1
17p loss	32 (36%)	58	0.00305	1	0.00016	0.111	0.45603	1	0.19676	1	0.01156	1	0.0134	1	0.081129	1	0.00285	1	0.01424	1	0.11108	1
17q loss	24 (27%)	66	0.01485	1	0.0051299	1	0.63936	1	0.51553	1	0.11755	1	0.034	1	0.068629	1	0.02037	1	0.22846	1	0.10756	1
18p loss	37 (41%)	53	0.02384	1	0.25968	1	0.97632	1	0.68744	1	0.77358	1	0.64475	1	0.69521	1	0.69334	1	0.35347	1	0.34031	1
18q loss	35 (39%)	55	0.03642	1	0.42419	1	0.93296	1	0.53336	1	0.82455	1	0.93461	1	0.49547	1	0.9147	1	0.29174	1	0.35438	1
19p loss	5 (6%)	85	0.092289	1	0.44415	1	NA	NA	NA	NA	0.15792	1	0.01332	1	0.14024	1	0.71795	1	0.27961	1	0.11074	1
19q loss	4 (4%)	86	0.18408	1	0.70631	1	NA	NA	NA	NA	0.77097	1	0.11784	1	0.78425	1	0.20564	1	1	1	0.43169	1
20p loss	9 (10%)	81	0.04176	1	0.30341	1	0.54385	1	0.85398	1	0.21419	1	0.12318	1	0.067389	1	0.44701	1	0.02028	1	0.44418	1
20q loss	3 (3%)	87	0.17968	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
21q loss	15 (17%)	75	0.11374	1	0.33905	1	0.04985	1	0.052139	1	0.25426	1	0.25058	1	0.22576	1	0.50934	1	0.083589	1	0.10069	1
22q loss	48 (53%)	42	0.01534	1	0.080539	1	0.97428	1	0.48348	1	0.62051	1	0.28144	1	0.8758	1	0.82539	1	0.68208	1	0.22863	1
xq loss	17 (19%)	73	0.00054999	0.375	0.24369	1	0.26686	1	0.26379	1	0.03294	1	0.04563	1	0.65441	1	0.16778	1	0.24493	1	0.79776	1
