[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oTACC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/11588954/ACC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/11566494/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=90, common to both=90
[1] 46 90
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         17                          73 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         17                          73 
[1] "AMP PEAK  2(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE 
                           41                            49 
  AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE 
                           41                            49 
[1] "AMP PEAK  3(4Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE 
                           29                            61 
  AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE 
                           29                            61 
[1] "AMP PEAK  4(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            65                             25 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            65                             25 
[1] "AMP PEAK  5(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           63                            27 
  AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE 
                           63                            27 
[1] "AMP PEAK  6(6P21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE 
                            19                             71 
  AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE 
                            19                             71 
[1] "AMP PEAK  7(6Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE 
                           19                            71 
  AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE 
                           19                            71 
[1] "AMP PEAK  8(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           54                            36 
  AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE 
                           54                            36 
[1] "AMP PEAK  9(9Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE 
                           34                            56 
  AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE 
                           34                            56 
[1] "AMP PEAK 10(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE 
                            70                             20 
  AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE 
                            70                             20 
[1] "AMP PEAK 11(14Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE 
                            27                             63 
  AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE 
                            27                             63 
[1] "AMP PEAK 12(16P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE 
                            50                             40 
  AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE 
                            50                             40 
[1] "AMP PEAK 13(16Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE 
                            56                             34 
  AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE 
                            56                             34 
[1] "AMP PEAK 14(16Q24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE 
                            49                             41 
  AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE 
                            49                             41 
[1] "AMP PEAK 15(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE 
                            18                             72 
  AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE 
                            18                             72 
[1] "AMP PEAK 16(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE 
                             58                              32 
  AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE 
                             58                              32 
[1] "AMP PEAK 17(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE 
                          56                           34 
  AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE 
                          56                           34 
[1] "AMP PEAK 18(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE 
                            49                             41 
  AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE 
                            49                             41 
[1] "AMP PEAK 19(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE 
                         46                          44 
  AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE 
                         46                          44 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            38                             52 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            38                             52 
[1] "DEL PEAK  2(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                         18                          72 
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                         18                          72 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           18                            72 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           18                            72 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           21                            69 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           21                            69 
[1] "DEL PEAK  5(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            25                             65 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            25                             65 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           25                            65 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           25                            65 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           28                            62 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           28                            62 
[1] "DEL PEAK  8(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           30                            60 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           30                            60 
[1] "DEL PEAK  9(6P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           20                            70 
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           20                            70 
[1] "DEL PEAK 10(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         21                          69 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         21                          69 
[1] "DEL PEAK 11(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           11                            79 
  DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE 
                           11                            79 
[1] "DEL PEAK 12(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE 
                         24                          66 
  DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE 
                         24                          66 
[1] "DEL PEAK 13(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           27                            63 
  DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE 
                           27                            63 
[1] "DEL PEAK 14(10Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE 
                            11                             79 
  DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE 
                            11                             79 
[1] "DEL PEAK 15(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE 
                            27                             63 
  DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE 
                            27                             63 
[1] "DEL PEAK 16(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE 
                            25                             65 
  DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE 
                            25                             65 
[1] "DEL PEAK 17(12Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE 
                             5                             85 
  DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE 
                             5                             85 
[1] "DEL PEAK 18(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                            42                             48 
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                            42                             48 
[1] "DEL PEAK 19(14Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE 
                            20                             70 
  DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE 
                            20                             70 
[1] "DEL PEAK 20(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE 
                             7                             83 
  DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE 
                             7                             83 
[1] "DEL PEAK 21(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            11                             79 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            11                             79 
[1] "DEL PEAK 22(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE 
                            24                             66 
  DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE 
                            24                             66 
[1] "DEL PEAK 23(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE 
                             26                              64 
  DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE 
                             26                              64 
[1] "DEL PEAK 24(17Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE 
                            24                             66 
  DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE 
                            24                             66 
[1] "DEL PEAK 25(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE 
                            36                             54 
  DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE 
                            36                             54 
[1] "DEL PEAK 26(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                            12                             78 
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                            12                             78 
[1] "DEL PEAK 27(22Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE 
                            50                             40 
  DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE 
                            50                             40 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 90 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 90 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       13      2      2      0
  AMP PEAK  1(1Q22) WILD-TYPE     23     24     14     12
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        13                          23
  CLUS_2                         2                          24
  CLUS_3                         2                          14
  CLUS_4                         0                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        9      2      0      4      0
  AMP PEAK  1(1Q22) WILD-TYPE      9      9     20     14     11
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         9                           9
  CLUS_2                         2                           9
  CLUS_3                         0                          20
  CLUS_4                         4                          14
  CLUS_5                         0                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        4      1      1      2
  AMP PEAK  1(1Q22) WILD-TYPE     10     11      9      7
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         1                          11
  CLUS_3                         1                           9
  CLUS_4                         2                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        2      1      0      2      1      0      1
  AMP PEAK  1(1Q22) WILD-TYPE      6      6      7      1      3      4      5
                             vv
clus                          CLUS_8
  AMP PEAK  1(1Q22) MUTATED        1
  AMP PEAK  1(1Q22) WILD-TYPE      5
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         2                           1
  CLUS_5                         1                           3
  CLUS_6                         0                           4
  CLUS_7                         1                           5
  CLUS_8                         1                           5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       11      1      1      2
  AMP PEAK  1(1Q22) WILD-TYPE     13     12     16     21
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                         1                          12
  CLUS_3                         1                          16
  CLUS_4                         2                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       11      1      2      1
  AMP PEAK  1(1Q22) WILD-TYPE     12     22      5     23
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                          12
  CLUS_2                         1                          22
  CLUS_3                         2                           5
  CLUS_4                         1                          23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        8      5      2
  AMP PEAK  1(1Q22) WILD-TYPE     28     11     24
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                          28
  CLUS_2                         5                          11
  CLUS_3                         2                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        2      5      0      7      1
  AMP PEAK  1(1Q22) WILD-TYPE     14     22     11     13      3
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         2                          14
  CLUS_2                         5                          22
  CLUS_3                         0                          11
  CLUS_4                         7                          13
  CLUS_5                         1                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        4      9      2
  AMP PEAK  1(1Q22) WILD-TYPE     24     13     25
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         4                          24
  CLUS_2                         9                          13
  CLUS_3                         2                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       10      3      2
  AMP PEAK  1(1Q22) WILD-TYPE     29     21     12
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        10                          29
  CLUS_2                         3                          21
  CLUS_3                         2                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        8     13     11      9
  AMP PEAK  2(4P16.3) WILD-TYPE     28     13      5      3
D2V1, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           8                            28
  CLUS_2                          13                            13
  CLUS_3                          11                             5
  CLUS_4                           9                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(4P16.3) MUTATED        6      5     12      7      5
  AMP PEAK  2(4P16.3) WILD-TYPE     12      6      8     11      6
D2V2, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           6                            12
  CLUS_2                           5                             6
  CLUS_3                          12                             8
  CLUS_4                           7                            11
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        6      7      5      4
  AMP PEAK  2(4P16.3) WILD-TYPE      8      5      5      5
D2V3, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           7                             5
  CLUS_3                           5                             5
  CLUS_4                           4                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(4P16.3) MUTATED        2      5      2      2      1      3
  AMP PEAK  2(4P16.3) WILD-TYPE      6      2      5      1      3      1
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(4P16.3) MUTATED        5      2
  AMP PEAK  2(4P16.3) WILD-TYPE      1      4
D2V4, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           5                             2
  CLUS_3                           2                             5
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           3                             1
  CLUS_7                           5                             1
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        5      7     12     10
  AMP PEAK  2(4P16.3) WILD-TYPE     19      6      5     13
D2V5, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           7                             6
  CLUS_3                          12                             5
  CLUS_4                          10                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(4P16.3) MUTATED        5     15      1     13
  AMP PEAK  2(4P16.3) WILD-TYPE     18      8      6     11
D2V6, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          15                             8
  CLUS_3                           1                             6
  CLUS_4                          13                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(4P16.3) MUTATED       17      5     13
  AMP PEAK  2(4P16.3) WILD-TYPE     19     11     13
D2V7, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                          17                            19
  CLUS_2                           5                            11
  CLUS_3                          13                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(4P16.3) MUTATED       11     10      6      5      3
  AMP PEAK  2(4P16.3) WILD-TYPE      5     17      5     15      1
D2V8, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                          11                             5
  CLUS_2                          10                            17
  CLUS_3                           6                             5
  CLUS_4                           5                            15
  CLUS_5                           3                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(4P16.3) MUTATED       14      7     13
  AMP PEAK  2(4P16.3) WILD-TYPE     14     15     14
D2V9, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                          14                            14
  CLUS_2                           7                            15
  CLUS_3                          13                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(4P16.3) MUTATED       18     10      6
  AMP PEAK  2(4P16.3) WILD-TYPE     21     14      8
D2V10, multiclass
        clus
vv       AMP PEAK  2(4P16.3) MUTATED AMP PEAK  2(4P16.3) WILD-TYPE
  CLUS_1                          18                            21
  CLUS_2                          10                            14
  CLUS_3                           6                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(4Q35.1) MUTATED        2     10      7     10
  AMP PEAK  3(4Q35.1) WILD-TYPE     34     16      9      2
D3V1, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           2                            34
  CLUS_2                          10                            16
  CLUS_3                           7                             9
  CLUS_4                          10                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(4Q35.1) MUTATED        2      3      8      7      5
  AMP PEAK  3(4Q35.1) WILD-TYPE     16      8     12     11      6
D3V2, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           3                             8
  CLUS_3                           8                            12
  CLUS_4                           7                            11
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(4Q35.1) MUTATED        5      4      4      5
  AMP PEAK  3(4Q35.1) WILD-TYPE      9      8      6      4
D3V3, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           4                             8
  CLUS_3                           4                             6
  CLUS_4                           5                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(4Q35.1) MUTATED        3      2      3      0      1      3
  AMP PEAK  3(4Q35.1) WILD-TYPE      5      5      4      3      3      1
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  3(4Q35.1) MUTATED        4      2
  AMP PEAK  3(4Q35.1) WILD-TYPE      2      4
D3V4, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           2                             5
  CLUS_3                           3                             4
  CLUS_4                           0                             3
  CLUS_5                           1                             3
  CLUS_6                           3                             1
  CLUS_7                           4                             2
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(4Q35.1) MUTATED        1      4      9     11
  AMP PEAK  3(4Q35.1) WILD-TYPE     23      9      8     12
D3V5, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           1                            23
  CLUS_2                           4                             9
  CLUS_3                           9                             8
  CLUS_4                          11                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(4Q35.1) MUTATED        2     10      0     13
  AMP PEAK  3(4Q35.1) WILD-TYPE     21     13      7     11
D3V6, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                          10                            13
  CLUS_3                           0                             7
  CLUS_4                          13                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(4Q35.1) MUTATED        9      3     13
  AMP PEAK  3(4Q35.1) WILD-TYPE     27     13     13
D3V7, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           9                            27
  CLUS_2                           3                            13
  CLUS_3                          13                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(4Q35.1) MUTATED        7     10      6      0      2
  AMP PEAK  3(4Q35.1) WILD-TYPE      9     17      5     20      2
D3V8, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                          10                            17
  CLUS_3                           6                             5
  CLUS_4                           0                            20
  CLUS_5                           2                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(4Q35.1) MUTATED        9      3     12
  AMP PEAK  3(4Q35.1) WILD-TYPE     19     19     15
D3V9, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           9                            19
  CLUS_2                           3                            19
  CLUS_3                          12                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(4Q35.1) MUTATED        9     10      5
  AMP PEAK  3(4Q35.1) WILD-TYPE     30     14      9
D3V10, multiclass
        clus
vv       AMP PEAK  3(4Q35.1) MUTATED AMP PEAK  3(4Q35.1) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                          10                            14
  CLUS_3                           5                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       14     25     15     11
  AMP PEAK  4(5P15.33) WILD-TYPE     22      1      1      1
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           14                             22
  CLUS_2                           25                              1
  CLUS_3                           15                              1
  CLUS_4                           11                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.33) MUTATED       12      8     16     13      9
  AMP PEAK  4(5P15.33) WILD-TYPE      6      3      4      5      2
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                            8                              3
  CLUS_3                           16                              4
  CLUS_4                           13                              5
  CLUS_5                            9                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED        9      9      9      8
  AMP PEAK  4(5P15.33) WILD-TYPE      5      3      1      1
D4V3, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            9                              3
  CLUS_3                            9                              1
  CLUS_4                            8                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5P15.33) MUTATED        5      6      6      2      3      4
  AMP PEAK  4(5P15.33) WILD-TYPE      3      1      1      1      1      0
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  4(5P15.33) MUTATED        5      4
  AMP PEAK  4(5P15.33) WILD-TYPE      1      2
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            6                              1
  CLUS_3                            6                              1
  CLUS_4                            2                              1
  CLUS_5                            3                              1
  CLUS_6                            4                              0
  CLUS_7                            5                              1
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       12     10     16     19
  AMP PEAK  4(5P15.33) WILD-TYPE     12      3      1      4
D4V5, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           10                              3
  CLUS_3                           16                              1
  CLUS_4                           19                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.33) MUTATED       13     20      2     22
  AMP PEAK  4(5P15.33) WILD-TYPE     10      3      5      2
D4V6, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           13                             10
  CLUS_2                           20                              3
  CLUS_3                            2                              5
  CLUS_4                           22                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       28      8     22
  AMP PEAK  4(5P15.33) WILD-TYPE      8      8      4
D4V7, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           28                              8
  CLUS_2                            8                              8
  CLUS_3                           22                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.33) MUTATED       15     19      9     12      3
  AMP PEAK  4(5P15.33) WILD-TYPE      1      8      2      8      1
D4V8, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           15                              1
  CLUS_2                           19                              8
  CLUS_3                            9                              2
  CLUS_4                           12                              8
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       23     11     23
  AMP PEAK  4(5P15.33) WILD-TYPE      5     11      4
D4V9, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           23                              5
  CLUS_2                           11                             11
  CLUS_3                           23                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.33) MUTATED       30     19      8
  AMP PEAK  4(5P15.33) WILD-TYPE      9      5      6
D4V10, multiclass
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  CLUS_1                           30                              9
  CLUS_2                           19                              5
  CLUS_3                            8                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.3) MUTATED       12     26     15     10
  AMP PEAK  5(5Q35.3) WILD-TYPE     24      0      1      2
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                          12                            24
  CLUS_2                          26                             0
  CLUS_3                          15                             1
  CLUS_4                          10                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5Q35.3) MUTATED        7      7     19     13     10
  AMP PEAK  5(5Q35.3) WILD-TYPE     11      4      1      5      1
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                           7                             4
  CLUS_3                          19                             1
  CLUS_4                          13                             5
  CLUS_5                          10                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.3) MUTATED       10      8     10      6
  AMP PEAK  5(5Q35.3) WILD-TYPE      4      4      0      3
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                           8                             4
  CLUS_3                          10                             0
  CLUS_4                           6                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.3) MUTATED        4      7      7      1      2      4
  AMP PEAK  5(5Q35.3) WILD-TYPE      4      0      0      2      2      0
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  5(5Q35.3) MUTATED        6      3
  AMP PEAK  5(5Q35.3) WILD-TYPE      0      3
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           7                             0
  CLUS_3                           7                             0
  CLUS_4                           1                             2
  CLUS_5                           2                             2
  CLUS_6                           4                             0
  CLUS_7                           6                             0
  CLUS_8                           3                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.3) MUTATED        7     12     16     20
  AMP PEAK  5(5Q35.3) WILD-TYPE     17      1      1      3
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          12                             1
  CLUS_3                          16                             1
  CLUS_4                          20                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(5Q35.3) MUTATED        8     22      2     23
  AMP PEAK  5(5Q35.3) WILD-TYPE     15      1      5      1
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                          22                             1
  CLUS_3                           2                             5
  CLUS_4                          23                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.3) MUTATED       24      8     24
  AMP PEAK  5(5Q35.3) WILD-TYPE     12      8      2
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                          24                            12
  CLUS_2                           8                             8
  CLUS_3                          24                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5Q35.3) MUTATED       14     21      9      9      3
  AMP PEAK  5(5Q35.3) WILD-TYPE      2      6      2     11      1
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                          14                             2
  CLUS_2                          21                             6
  CLUS_3                           9                             2
  CLUS_4                           9                            11
  CLUS_5                           3                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.3) MUTATED       20     11     24
  AMP PEAK  5(5Q35.3) WILD-TYPE      8     11      3
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                          20                             8
  CLUS_2                          11                            11
  CLUS_3                          24                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.3) MUTATED       26     20      9
  AMP PEAK  5(5Q35.3) WILD-TYPE     13      4      5
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q35.3) MUTATED AMP PEAK  5(5Q35.3) WILD-TYPE
  CLUS_1                          26                            13
  CLUS_2                          20                             4
  CLUS_3                           9                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(6P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P21.31) MUTATED        7      2      5      5
  AMP PEAK  6(6P21.31) WILD-TYPE     29     24     11      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            2                             24
  CLUS_3                            5                             11
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6P21.31) MUTATED        5      1      3      3      2
  AMP PEAK  6(6P21.31) WILD-TYPE     13     10     17     15      9
D6V2, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            1                             10
  CLUS_3                            3                             17
  CLUS_4                            3                             15
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P21.31) MUTATED        3      2      2      1
  AMP PEAK  6(6P21.31) WILD-TYPE     11     10      8      8
D6V3, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                             10
  CLUS_3                            2                              8
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6P21.31) MUTATED        1      2      2      1      0      1
  AMP PEAK  6(6P21.31) WILD-TYPE      7      5      5      2      4      3
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  6(6P21.31) MUTATED        1      0
  AMP PEAK  6(6P21.31) WILD-TYPE      5      6
D6V4, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            2                              5
  CLUS_4                            1                              2
  CLUS_5                            0                              4
  CLUS_6                            1                              3
  CLUS_7                            1                              5
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P21.31) MUTATED        4      0      6      3
  AMP PEAK  6(6P21.31) WILD-TYPE     20     13     11     20
D6V5, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            0                             13
  CLUS_3                            6                             11
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6P21.31) MUTATED        4      4      1      4
  AMP PEAK  6(6P21.31) WILD-TYPE     19     19      6     20
D6V6, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            4                             19
  CLUS_3                            1                              6
  CLUS_4                            4                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P21.31) MUTATED       10      1      3
  AMP PEAK  6(6P21.31) WILD-TYPE     26     15     23
D6V7, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            1                             15
  CLUS_3                            3                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6P21.31) MUTATED        5      2      5      2      0
  AMP PEAK  6(6P21.31) WILD-TYPE     11     25      6     18      4
D6V8, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            2                             25
  CLUS_3                            5                              6
  CLUS_4                            2                             18
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P21.31) MUTATED        7      3      3
  AMP PEAK  6(6P21.31) WILD-TYPE     21     19     24
D6V9, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            7                             21
  CLUS_2                            3                             19
  CLUS_3                            3                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6P21.31) MUTATED        9      2      2
  AMP PEAK  6(6P21.31) WILD-TYPE     30     22     12
D6V10, multiclass
        clus
vv       AMP PEAK  6(6P21.31) MUTATED AMP PEAK  6(6P21.31) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                            2                             22
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q24.3) MUTATED        9      1      4      5
  AMP PEAK  7(6Q24.3) WILD-TYPE     27     25     12      7
D7V1, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           9                            27
  CLUS_2                           1                            25
  CLUS_3                           4                            12
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6Q24.3) MUTATED        4      1      5      4      2
  AMP PEAK  7(6Q24.3) WILD-TYPE     14     10     15     14      9
D7V2, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           1                            10
  CLUS_3                           5                            15
  CLUS_4                           4                            14
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q24.3) MUTATED        3      3      3      2
  AMP PEAK  7(6Q24.3) WILD-TYPE     11      9      7      7
D7V3, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             9
  CLUS_3                           3                             7
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(6Q24.3) MUTATED        2      3      3      0      1      1
  AMP PEAK  7(6Q24.3) WILD-TYPE      6      4      4      3      3      3
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  7(6Q24.3) MUTATED        1      0
  AMP PEAK  7(6Q24.3) WILD-TYPE      5      6
D7V4, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             4
  CLUS_3                           3                             4
  CLUS_4                           0                             3
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           1                             5
  CLUS_8                           0                             6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q24.3) MUTATED        5      0      7      4
  AMP PEAK  7(6Q24.3) WILD-TYPE     19     13     10     19
D7V5, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           0                            13
  CLUS_3                           7                            10
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(6Q24.3) MUTATED        4      5      2      5
  AMP PEAK  7(6Q24.3) WILD-TYPE     19     18      5     19
D7V6, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           5                            18
  CLUS_3                           2                             5
  CLUS_4                           5                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q24.3) MUTATED        9      3      4
  AMP PEAK  7(6Q24.3) WILD-TYPE     27     13     22
D7V7, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           9                            27
  CLUS_2                           3                            13
  CLUS_3                           4                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(6Q24.3) MUTATED        4      4      5      3      0
  AMP PEAK  7(6Q24.3) WILD-TYPE     12     23      6     17      4
D7V8, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           4                            23
  CLUS_3                           5                             6
  CLUS_4                           3                            17
  CLUS_5                           0                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q24.3) MUTATED        7      3      5
  AMP PEAK  7(6Q24.3) WILD-TYPE     21     19     22
D7V9, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           7                            21
  CLUS_2                           3                            19
  CLUS_3                           5                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(6Q24.3) MUTATED        8      4      3
  AMP PEAK  7(6Q24.3) WILD-TYPE     31     20     11
D7V10, multiclass
        clus
vv       AMP PEAK  7(6Q24.3) MUTATED AMP PEAK  7(6Q24.3) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           4                            20
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P22.1) MUTATED       13     20     13      8
  AMP PEAK  8(7P22.1) WILD-TYPE     23      6      3      4
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          13                            23
  CLUS_2                          20                             6
  CLUS_3                          13                             3
  CLUS_4                           8                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7P22.1) MUTATED        8      8     14     10      7
  AMP PEAK  8(7P22.1) WILD-TYPE     10      3      6      8      4
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                           8                            10
  CLUS_2                           8                             3
  CLUS_3                          14                             6
  CLUS_4                          10                             8
  CLUS_5                           7                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P22.1) MUTATED       10      7      9      7
  AMP PEAK  8(7P22.1) WILD-TYPE      4      5      1      2
D8V3, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                           7                             5
  CLUS_3                           9                             1
  CLUS_4                           7                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7P22.1) MUTATED        6      7      5      2      3      3
  AMP PEAK  8(7P22.1) WILD-TYPE      2      0      2      1      1      1
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  8(7P22.1) MUTATED        4      3
  AMP PEAK  8(7P22.1) WILD-TYPE      2      3
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                           7                             0
  CLUS_3                           5                             2
  CLUS_4                           2                             1
  CLUS_5                           3                             1
  CLUS_6                           3                             1
  CLUS_7                           4                             2
  CLUS_8                           3                             3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P22.1) MUTATED       10     12     13     12
  AMP PEAK  8(7P22.1) WILD-TYPE     14      1      4     11
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          12                             1
  CLUS_3                          13                             4
  CLUS_4                          12                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P22.1) MUTATED       12     19      2     14
  AMP PEAK  8(7P22.1) WILD-TYPE     11      4      5     10
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          19                             4
  CLUS_3                           2                             5
  CLUS_4                          14                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P22.1) MUTATED       24      9     14
  AMP PEAK  8(7P22.1) WILD-TYPE     12      7     12
D8V7, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          24                            12
  CLUS_2                           9                             7
  CLUS_3                          14                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7P22.1) MUTATED       11     15      6     11      4
  AMP PEAK  8(7P22.1) WILD-TYPE      5     12      5      9      0
D8V8, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          11                             5
  CLUS_2                          15                            12
  CLUS_3                           6                             5
  CLUS_4                          11                             9
  CLUS_5                           4                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P22.1) MUTATED       18     13     15
  AMP PEAK  8(7P22.1) WILD-TYPE     10      9     12
D8V9, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          18                            10
  CLUS_2                          13                             9
  CLUS_3                          15                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P22.1) MUTATED       26     15      5
  AMP PEAK  8(7P22.1) WILD-TYPE     13      9      9
D8V10, multiclass
        clus
vv       AMP PEAK  8(7P22.1) MUTATED AMP PEAK  8(7P22.1) WILD-TYPE
  CLUS_1                          26                            13
  CLUS_2                          15                             9
  CLUS_3                           5                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(9Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(9Q31.3) MUTATED       11      5     13      5
  AMP PEAK  9(9Q31.3) WILD-TYPE     25     21      3      7
D9V1, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                          11                            25
  CLUS_2                           5                            21
  CLUS_3                          13                             3
  CLUS_4                           5                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(9Q31.3) MUTATED        9      5      9      2      1
  AMP PEAK  9(9Q31.3) WILD-TYPE      9      6     11     16     10
D9V2, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                           5                             6
  CLUS_3                           9                            11
  CLUS_4                           2                            16
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(9Q31.3) MUTATED        7      5      1      3
  AMP PEAK  9(9Q31.3) WILD-TYPE      7      7      9      6
D9V3, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           5                             7
  CLUS_3                           1                             9
  CLUS_4                           3                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(9Q31.3) MUTATED        5      4      0      2      1      1
  AMP PEAK  9(9Q31.3) WILD-TYPE      3      3      7      1      3      3
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  9(9Q31.3) MUTATED        1      2
  AMP PEAK  9(9Q31.3) WILD-TYPE      5      4
D9V4, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                           4                             3
  CLUS_3                           0                             7
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           1                             5
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(9Q31.3) MUTATED        8      8      6      3
  AMP PEAK  9(9Q31.3) WILD-TYPE     16      5     11     20
D9V5, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                           8                             5
  CLUS_3                           6                            11
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(9Q31.3) MUTATED        9     12      1      3
  AMP PEAK  9(9Q31.3) WILD-TYPE     14     11      6     21
D9V6, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                          12                            11
  CLUS_3                           1                             6
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q31.3) MUTATED       15      7      4
  AMP PEAK  9(9Q31.3) WILD-TYPE     21      9     22
D9V7, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                          15                            21
  CLUS_2                           7                             9
  CLUS_3                           4                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(9Q31.3) MUTATED        5      7      2      9      3
  AMP PEAK  9(9Q31.3) WILD-TYPE     11     20      9     11      1
D9V8, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                            20
  CLUS_3                           2                             9
  CLUS_4                           9                            11
  CLUS_5                           3                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q31.3) MUTATED       10     10      6
  AMP PEAK  9(9Q31.3) WILD-TYPE     18     12     21
D9V9, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                          10                            18
  CLUS_2                          10                            12
  CLUS_3                           6                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q31.3) MUTATED       17      7      2
  AMP PEAK  9(9Q31.3) WILD-TYPE     22     17     12
D9V10, multiclass
        clus
vv       AMP PEAK  9(9Q31.3) MUTATED AMP PEAK  9(9Q31.3) WILD-TYPE
  CLUS_1                          17                            22
  CLUS_2                           7                            17
  CLUS_3                           2                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12Q14.1) MUTATED       19     26     16      9
  AMP PEAK 10(12Q14.1) WILD-TYPE     17      0      0      3
D10V1, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           19                             17
  CLUS_2                           26                              0
  CLUS_3                           16                              0
  CLUS_4                            9                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12Q14.1) MUTATED       14      6     18     14      9
  AMP PEAK 10(12Q14.1) WILD-TYPE      4      5      2      4      2
D10V2, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           14                              4
  CLUS_2                            6                              5
  CLUS_3                           18                              2
  CLUS_4                           14                              4
  CLUS_5                            9                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12Q14.1) MUTATED       12      6     10      8
  AMP PEAK 10(12Q14.1) WILD-TYPE      2      6      0      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           12                              2
  CLUS_2                            6                              6
  CLUS_3                           10                              0
  CLUS_4                            8                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12Q14.1) MUTATED        7      6      7      3      3      4
  AMP PEAK 10(12Q14.1) WILD-TYPE      1      1      0      0      1      0
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 10(12Q14.1) MUTATED        5      1
  AMP PEAK 10(12Q14.1) WILD-TYPE      1      5
D10V4, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            6                              1
  CLUS_3                            7                              0
  CLUS_4                            3                              0
  CLUS_5                            3                              1
  CLUS_6                            4                              0
  CLUS_7                            5                              1
  CLUS_8                            1                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12Q14.1) MUTATED       14     13     14     19
  AMP PEAK 10(12Q14.1) WILD-TYPE     10      0      3      4
D10V5, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           13                              0
  CLUS_3                           14                              3
  CLUS_4                           19                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12Q14.1) MUTATED       14     20      3     23
  AMP PEAK 10(12Q14.1) WILD-TYPE      9      3      4      1
D10V6, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           14                              9
  CLUS_2                           20                              3
  CLUS_3                            3                              4
  CLUS_4                           23                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12Q14.1) MUTATED       28     11     22
  AMP PEAK 10(12Q14.1) WILD-TYPE      8      5      4
D10V7, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           28                              8
  CLUS_2                           11                              5
  CLUS_3                           22                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12Q14.1) MUTATED       14     22      8     15      2
  AMP PEAK 10(12Q14.1) WILD-TYPE      2      5      3      5      2
D10V8, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           14                              2
  CLUS_2                           22                              5
  CLUS_3                            8                              3
  CLUS_4                           15                              5
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12Q14.1) MUTATED       22     15     23
  AMP PEAK 10(12Q14.1) WILD-TYPE      6      7      4
D10V9, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           22                              6
  CLUS_2                           15                              7
  CLUS_3                           23                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12Q14.1) MUTATED       29     22      9
  AMP PEAK 10(12Q14.1) WILD-TYPE     10      2      5
D10V10, multiclass
        clus
vv       AMP PEAK 10(12Q14.1) MUTATED AMP PEAK 10(12Q14.1) WILD-TYPE
  CLUS_1                           29                             10
  CLUS_2                           22                              2
  CLUS_3                            9                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(14Q11.2) MUTATED        7      5     13      2
  AMP PEAK 11(14Q11.2) WILD-TYPE     29     21      3     10
D11V1, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            5                             21
  CLUS_3                           13                              3
  CLUS_4                            2                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(14Q11.2) MUTATED        6      4     11      1      2
  AMP PEAK 11(14Q11.2) WILD-TYPE     12      7      9     17      9
D11V2, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            4                              7
  CLUS_3                           11                              9
  CLUS_4                            1                             17
  CLUS_5                            2                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(14Q11.2) MUTATED        4      7      0      2
  AMP PEAK 11(14Q11.2) WILD-TYPE     10      5     10      7
D11V3, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            7                              5
  CLUS_3                            0                             10
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(14Q11.2) MUTATED        3      5      0      2      0      0
  AMP PEAK 11(14Q11.2) WILD-TYPE      5      2      7      1      4      4
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(14Q11.2) MUTATED        1      2
  AMP PEAK 11(14Q11.2) WILD-TYPE      5      4
D11V4, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            5                              2
  CLUS_3                            0                              7
  CLUS_4                            2                              1
  CLUS_5                            0                              4
  CLUS_6                            0                              4
  CLUS_7                            1                              5
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(14Q11.2) MUTATED        4      7     11      1
  AMP PEAK 11(14Q11.2) WILD-TYPE     20      6      6     22
D11V5, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            7                              6
  CLUS_3                           11                              6
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(14Q11.2) MUTATED        5     16      0      2
  AMP PEAK 11(14Q11.2) WILD-TYPE     18      7      7     22
D11V6, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           16                              7
  CLUS_3                            0                              7
  CLUS_4                            2                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(14Q11.2) MUTATED       19      3      2
  AMP PEAK 11(14Q11.2) WILD-TYPE     17     13     24
D11V7, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                           19                             17
  CLUS_2                            3                             13
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(14Q11.2) MUTATED        9      3      3      6      3
  AMP PEAK 11(14Q11.2) WILD-TYPE      7     24      8     14      1
D11V8, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            3                             24
  CLUS_3                            3                              8
  CLUS_4                            6                             14
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(14Q11.2) MUTATED       15      6      2
  AMP PEAK 11(14Q11.2) WILD-TYPE     13     16     25
D11V9, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                           15                             13
  CLUS_2                            6                             16
  CLUS_3                            2                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(14Q11.2) MUTATED       19      3      1
  AMP PEAK 11(14Q11.2) WILD-TYPE     20     21     13
D11V10, multiclass
        clus
vv       AMP PEAK 11(14Q11.2) MUTATED AMP PEAK 11(14Q11.2) WILD-TYPE
  CLUS_1                           19                             20
  CLUS_2                            3                             21
  CLUS_3                            1                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16P13.3) MUTATED        6     26     11      7
  AMP PEAK 12(16P13.3) WILD-TYPE     30      0      5      5
D12V1, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                            6                             30
  CLUS_2                           26                              0
  CLUS_3                           11                              5
  CLUS_4                            7                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(16P13.3) MUTATED        7      6     15     10      7
  AMP PEAK 12(16P13.3) WILD-TYPE     11      5      5      8      4
D12V2, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            6                              5
  CLUS_3                           15                              5
  CLUS_4                           10                              8
  CLUS_5                            7                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16P13.3) MUTATED        8      7      6      4
  AMP PEAK 12(16P13.3) WILD-TYPE      6      5      4      5
D12V3, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            7                              5
  CLUS_3                            6                              4
  CLUS_4                            4                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(16P13.3) MUTATED        4      7      4      0      1      3
  AMP PEAK 12(16P13.3) WILD-TYPE      4      0      3      3      3      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(16P13.3) MUTATED        4      2
  AMP PEAK 12(16P13.3) WILD-TYPE      2      4
D12V4, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            7                              0
  CLUS_3                            4                              3
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16P13.3) MUTATED        5      9     14     16
  AMP PEAK 12(16P13.3) WILD-TYPE     19      4      3      7
D12V5, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            9                              4
  CLUS_3                           14                              3
  CLUS_4                           16                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(16P13.3) MUTATED        6     19      0     19
  AMP PEAK 12(16P13.3) WILD-TYPE     17      4      7      5
D12V6, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           19                              4
  CLUS_3                            0                              7
  CLUS_4                           19                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16P13.3) MUTATED       20      6     19
  AMP PEAK 12(16P13.3) WILD-TYPE     16     10      7
D12V7, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                           20                             16
  CLUS_2                            6                             10
  CLUS_3                           19                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(16P13.3) MUTATED       14     16      7      6      2
  AMP PEAK 12(16P13.3) WILD-TYPE      2     11      4     14      2
D12V8, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                           14                              2
  CLUS_2                           16                             11
  CLUS_3                            7                              4
  CLUS_4                            6                             14
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16P13.3) MUTATED       17      8     19
  AMP PEAK 12(16P13.3) WILD-TYPE     11     14      8
D12V9, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                           17                             11
  CLUS_2                            8                             14
  CLUS_3                           19                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(16P13.3) MUTATED       21     16      7
  AMP PEAK 12(16P13.3) WILD-TYPE     18      8      7
D12V10, multiclass
        clus
vv       AMP PEAK 12(16P13.3) MUTATED AMP PEAK 12(16P13.3) WILD-TYPE
  CLUS_1                           21                             18
  CLUS_2                           16                              8
  CLUS_3                            7                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(16Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q22.1) MUTATED       10     26     14      6
  AMP PEAK 13(16Q22.1) WILD-TYPE     26      0      2      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                           26                              0
  CLUS_3                           14                              2
  CLUS_4                            6                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(16Q22.1) MUTATED        9      7     16     11      6
  AMP PEAK 13(16Q22.1) WILD-TYPE      9      4      4      7      5
D13V2, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            7                              4
  CLUS_3                           16                              4
  CLUS_4                           11                              7
  CLUS_5                            6                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q22.1) MUTATED        9      9      6      6
  AMP PEAK 13(16Q22.1) WILD-TYPE      5      3      4      3
D13V3, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            9                              3
  CLUS_3                            6                              4
  CLUS_4                            6                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(16Q22.1) MUTATED        5      6      4      3      2      3
  AMP PEAK 13(16Q22.1) WILD-TYPE      3      1      3      0      2      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(16Q22.1) MUTATED        4      3
  AMP PEAK 13(16Q22.1) WILD-TYPE      2      3
D13V4, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            6                              1
  CLUS_3                            4                              3
  CLUS_4                            3                              0
  CLUS_5                            2                              2
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q22.1) MUTATED        9     10     13     16
  AMP PEAK 13(16Q22.1) WILD-TYPE     15      3      4      7
D13V5, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           10                              3
  CLUS_3                           13                              4
  CLUS_4                           16                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16Q22.1) MUTATED        9     20      1     18
  AMP PEAK 13(16Q22.1) WILD-TYPE     14      3      6      6
D13V6, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           20                              3
  CLUS_3                            1                              6
  CLUS_4                           18                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q22.1) MUTATED       24      6     19
  AMP PEAK 13(16Q22.1) WILD-TYPE     12     10      7
D13V7, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                           24                             12
  CLUS_2                            6                             10
  CLUS_3                           19                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(16Q22.1) MUTATED       15     17      6      9      2
  AMP PEAK 13(16Q22.1) WILD-TYPE      1     10      5     11      2
D13V8, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                           15                              1
  CLUS_2                           17                             10
  CLUS_3                            6                              5
  CLUS_4                            9                             11
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q22.1) MUTATED       19     10     19
  AMP PEAK 13(16Q22.1) WILD-TYPE      9     12      8
D13V9, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                           19                              9
  CLUS_2                           10                             12
  CLUS_3                           19                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16Q22.1) MUTATED       24     16      8
  AMP PEAK 13(16Q22.1) WILD-TYPE     15      8      6
D13V10, multiclass
        clus
vv       AMP PEAK 13(16Q22.1) MUTATED AMP PEAK 13(16Q22.1) WILD-TYPE
  CLUS_1                           24                             15
  CLUS_2                           16                              8
  CLUS_3                            8                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(16Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q24.2) MUTATED        6     26     11      6
  AMP PEAK 14(16Q24.2) WILD-TYPE     30      0      5      6
D14V1, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                            6                             30
  CLUS_2                           26                              0
  CLUS_3                           11                              5
  CLUS_4                            6                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16Q24.2) MUTATED        5      6     16     11      6
  AMP PEAK 14(16Q24.2) WILD-TYPE     13      5      4      7      5
D14V2, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            6                              5
  CLUS_3                           16                              4
  CLUS_4                           11                              7
  CLUS_5                            6                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q24.2) MUTATED        7      7      6      5
  AMP PEAK 14(16Q24.2) WILD-TYPE      7      5      4      4
D14V3, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            7                              5
  CLUS_3                            6                              4
  CLUS_4                            5                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(16Q24.2) MUTATED        4      6      4      0      2      3
  AMP PEAK 14(16Q24.2) WILD-TYPE      4      1      3      3      2      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 14(16Q24.2) MUTATED        4      2
  AMP PEAK 14(16Q24.2) WILD-TYPE      2      4
D14V4, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            6                              1
  CLUS_3                            4                              3
  CLUS_4                            0                              3
  CLUS_5                            2                              2
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q24.2) MUTATED        5     10     13     16
  AMP PEAK 14(16Q24.2) WILD-TYPE     19      3      4      7
D14V5, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                           10                              3
  CLUS_3                           13                              4
  CLUS_4                           16                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q24.2) MUTATED        5     20      1     18
  AMP PEAK 14(16Q24.2) WILD-TYPE     18      3      6      6
D14V6, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           20                              3
  CLUS_3                            1                              6
  CLUS_4                           18                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q24.2) MUTATED       19      6     19
  AMP PEAK 14(16Q24.2) WILD-TYPE     17     10      7
D14V7, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                           19                             17
  CLUS_2                            6                             10
  CLUS_3                           19                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16Q24.2) MUTATED       14     17      6      5      2
  AMP PEAK 14(16Q24.2) WILD-TYPE      2     10      5     15      2
D14V8, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                           14                              2
  CLUS_2                           17                             10
  CLUS_3                            6                              5
  CLUS_4                            5                             15
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q24.2) MUTATED       18      6     19
  AMP PEAK 14(16Q24.2) WILD-TYPE     10     16      8
D14V9, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                           18                             10
  CLUS_2                            6                             16
  CLUS_3                           19                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q24.2) MUTATED       19     16      8
  AMP PEAK 14(16Q24.2) WILD-TYPE     20      8      6
D14V10, multiclass
        clus
vv       AMP PEAK 14(16Q24.2) MUTATED AMP PEAK 14(16Q24.2) WILD-TYPE
  CLUS_1                           19                             20
  CLUS_2                           16                              8
  CLUS_3                            8                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q25.3) MUTATED       12      2      1      3
  AMP PEAK 15(17Q25.3) WILD-TYPE     24     24     15      9
D15V1, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            2                             24
  CLUS_3                            1                             15
  CLUS_4                            3                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q25.3) MUTATED        4      2      3      1      1
  AMP PEAK 15(17Q25.3) WILD-TYPE     14      9     17     17     10
D15V2, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            2                              9
  CLUS_3                            3                             17
  CLUS_4                            1                             17
  CLUS_5                            1                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q25.3) MUTATED        2      3      1      3
  AMP PEAK 15(17Q25.3) WILD-TYPE     12      9      9      6
D15V3, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              9
  CLUS_3                            1                              9
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17Q25.3) MUTATED        2      0      1      1      3      1
  AMP PEAK 15(17Q25.3) WILD-TYPE      6      7      6      2      1      3
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 15(17Q25.3) MUTATED        0      1
  AMP PEAK 15(17Q25.3) WILD-TYPE      6      5
D15V4, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            0                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              2
  CLUS_5                            3                              1
  CLUS_6                            1                              3
  CLUS_7                            0                              6
  CLUS_8                            1                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q25.3) MUTATED        6      2      0      3
  AMP PEAK 15(17Q25.3) WILD-TYPE     18     11     17     20
D15V5, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            2                             11
  CLUS_3                            0                             17
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q25.3) MUTATED        5      2      1      3
  AMP PEAK 15(17Q25.3) WILD-TYPE     18     21      6     21
D15V6, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            2                             21
  CLUS_3                            1                              6
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q25.3) MUTATED        4      4      3
  AMP PEAK 15(17Q25.3) WILD-TYPE     32     12     23
D15V7, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            4                             12
  CLUS_3                            3                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q25.3) MUTATED        1      5      1      3      1
  AMP PEAK 15(17Q25.3) WILD-TYPE     15     22     10     17      3
D15V8, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            5                             22
  CLUS_3                            1                             10
  CLUS_4                            3                             17
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q25.3) MUTATED        2      5      4
  AMP PEAK 15(17Q25.3) WILD-TYPE     26     17     23
D15V9, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                            5                             17
  CLUS_3                            4                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q25.3) MUTATED        4      5      2
  AMP PEAK 15(17Q25.3) WILD-TYPE     35     19     12
D15V10, multiclass
        clus
vv       AMP PEAK 15(17Q25.3) MUTATED AMP PEAK 15(17Q25.3) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            5                             19
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19P13.12) MUTATED       16     17     16      9
  AMP PEAK 16(19P13.12) WILD-TYPE     20      9      0      3
D16V1, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            16                              20
  CLUS_2                            17                               9
  CLUS_3                            16                               0
  CLUS_4                             9                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19P13.12) MUTATED       14      8     16      7      5
  AMP PEAK 16(19P13.12) WILD-TYPE      4      3      4     11      6
D16V2, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            14                               4
  CLUS_2                             8                               3
  CLUS_3                            16                               4
  CLUS_4                             7                              11
  CLUS_5                             5                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19P13.12) MUTATED       12      8      8      4
  AMP PEAK 16(19P13.12) WILD-TYPE      2      4      2      5
D16V3, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            12                               2
  CLUS_2                             8                               4
  CLUS_3                             8                               2
  CLUS_4                             4                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19P13.12) MUTATED        8      7      4      3      1      3
  AMP PEAK 16(19P13.12) WILD-TYPE      0      0      3      0      3      1
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 16(19P13.12) MUTATED        4      2
  AMP PEAK 16(19P13.12) WILD-TYPE      2      4
D16V4, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                             8                               0
  CLUS_2                             7                               0
  CLUS_3                             4                               3
  CLUS_4                             3                               0
  CLUS_5                             1                               3
  CLUS_6                             3                               1
  CLUS_7                             4                               2
  CLUS_8                             2                               4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19P13.12) MUTATED       12     13     13     11
  AMP PEAK 16(19P13.12) WILD-TYPE     12      0      4     12
D16V5, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            12                              12
  CLUS_2                            13                               0
  CLUS_3                            13                               4
  CLUS_4                            11                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19P13.12) MUTATED       15     21      1     12
  AMP PEAK 16(19P13.12) WILD-TYPE      8      2      6     12
D16V6, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            15                               8
  CLUS_2                            21                               2
  CLUS_3                             1                               6
  CLUS_4                            12                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.12) MUTATED       26     10     14
  AMP PEAK 16(19P13.12) WILD-TYPE     10      6     12
D16V7, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            26                              10
  CLUS_2                            10                               6
  CLUS_3                            14                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19P13.12) MUTATED       13     15      6     13      3
  AMP PEAK 16(19P13.12) WILD-TYPE      3     12      5      7      1
D16V8, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            13                               3
  CLUS_2                            15                              12
  CLUS_3                             6                               5
  CLUS_4                            13                               7
  CLUS_5                             3                               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.12) MUTATED       19     15     15
  AMP PEAK 16(19P13.12) WILD-TYPE      9      7     12
D16V9, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            19                               9
  CLUS_2                            15                               7
  CLUS_3                            15                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.12) MUTATED       28     15      6
  AMP PEAK 16(19P13.12) WILD-TYPE     11      9      8
D16V10, multiclass
        clus
vv       AMP PEAK 16(19P13.12) MUTATED AMP PEAK 16(19P13.12) WILD-TYPE
  CLUS_1                            28                              11
  CLUS_2                            15                               9
  CLUS_3                             6                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19Q12) MUTATED       17     15     16      8
  AMP PEAK 17(19Q12) WILD-TYPE     19     11      0      4
D17V1, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         17                           19
  CLUS_2                         15                           11
  CLUS_3                         16                            0
  CLUS_4                          8                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(19Q12) MUTATED       14      7     16      7      4
  AMP PEAK 17(19Q12) WILD-TYPE      4      4      4     11      7
D17V2, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         14                            4
  CLUS_2                          7                            4
  CLUS_3                         16                            4
  CLUS_4                          7                           11
  CLUS_5                          4                            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19Q12) MUTATED       11      7      7      4
  AMP PEAK 17(19Q12) WILD-TYPE      3      5      3      5
D17V3, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         11                            3
  CLUS_2                          7                            5
  CLUS_3                          7                            3
  CLUS_4                          4                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(19Q12) MUTATED        7      6      4      3      1      2      4
  AMP PEAK 17(19Q12) WILD-TYPE      1      1      3      0      3      2      2
                              vv
clus                           CLUS_8
  AMP PEAK 17(19Q12) MUTATED        2
  AMP PEAK 17(19Q12) WILD-TYPE      4
D17V4, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                          7                            1
  CLUS_2                          6                            1
  CLUS_3                          4                            3
  CLUS_4                          3                            0
  CLUS_5                          1                            3
  CLUS_6                          2                            2
  CLUS_7                          4                            2
  CLUS_8                          2                            4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19Q12) MUTATED       12     13     12     10
  AMP PEAK 17(19Q12) WILD-TYPE     12      0      5     13
D17V5, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                         13                            0
  CLUS_3                         12                            5
  CLUS_4                         10                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19Q12) MUTATED       15     20      1     11
  AMP PEAK 17(19Q12) WILD-TYPE      8      3      6     13
D17V6, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         15                            8
  CLUS_2                         20                            3
  CLUS_3                          1                            6
  CLUS_4                         11                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       26      9     13
  AMP PEAK 17(19Q12) WILD-TYPE     10      7     13
D17V7, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         26                           10
  CLUS_2                          9                            7
  CLUS_3                         13                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(19Q12) MUTATED       13     14      5     13      3
  AMP PEAK 17(19Q12) WILD-TYPE      3     13      6      7      1
D17V8, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         13                            3
  CLUS_2                         14                           13
  CLUS_3                          5                            6
  CLUS_4                         13                            7
  CLUS_5                          3                            1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       19     14     14
  AMP PEAK 17(19Q12) WILD-TYPE      9      8     13
D17V9, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         19                            9
  CLUS_2                         14                            8
  CLUS_3                         14                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       28     14      5
  AMP PEAK 17(19Q12) WILD-TYPE     11     10      9
D17V10, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         28                           11
  CLUS_2                         14                           10
  CLUS_3                          5                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XP11.22) MUTATED       11     22     11      5
  AMP PEAK 18(XP11.22) WILD-TYPE     25      4      5      7
D18V1, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                           22                              4
  CLUS_3                           11                              5
  CLUS_4                            5                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(XP11.22) MUTATED        9      7     10     10      7
  AMP PEAK 18(XP11.22) WILD-TYPE      9      4     10      8      4
D18V2, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                            9                              9
  CLUS_2                            7                              4
  CLUS_3                           10                             10
  CLUS_4                           10                              8
  CLUS_5                            7                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XP11.22) MUTATED       11      6      7      5
  AMP PEAK 18(XP11.22) WILD-TYPE      3      6      3      4
D18V3, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                           11                              3
  CLUS_2                            6                              6
  CLUS_3                            7                              3
  CLUS_4                            5                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(XP11.22) MUTATED        7      6      5      1      3      3
  AMP PEAK 18(XP11.22) WILD-TYPE      1      1      2      2      1      1
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 18(XP11.22) MUTATED        4      0
  AMP PEAK 18(XP11.22) WILD-TYPE      2      6
D18V4, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                            7                              1
  CLUS_2                            6                              1
  CLUS_3                            5                              2
  CLUS_4                            1                              2
  CLUS_5                            3                              1
  CLUS_6                            3                              1
  CLUS_7                            4                              2
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XP11.22) MUTATED        8     10     12     12
  AMP PEAK 18(XP11.22) WILD-TYPE     16      3      5     11
D18V5, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                           10                              3
  CLUS_3                           12                              5
  CLUS_4                           12                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XP11.22) MUTATED        9     15      2     16
  AMP PEAK 18(XP11.22) WILD-TYPE     14      8      5      8
D18V6, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           15                              8
  CLUS_3                            2                              5
  CLUS_4                           16                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XP11.22) MUTATED       20     10     13
  AMP PEAK 18(XP11.22) WILD-TYPE     16      6     13
D18V7, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                           20                             16
  CLUS_2                           10                              6
  CLUS_3                           13                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(XP11.22) MUTATED       11     17      7      7      1
  AMP PEAK 18(XP11.22) WILD-TYPE      5     10      4     13      3
D18V8, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                           17                             10
  CLUS_3                            7                              4
  CLUS_4                            7                             13
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XP11.22) MUTATED       17     11     14
  AMP PEAK 18(XP11.22) WILD-TYPE     11     11     13
D18V9, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                           17                             11
  CLUS_2                           11                             11
  CLUS_3                           14                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XP11.22) MUTATED       20     17      5
  AMP PEAK 18(XP11.22) WILD-TYPE     19      7      9
D18V10, multiclass
        clus
vv       AMP PEAK 18(XP11.22) MUTATED AMP PEAK 18(XP11.22) WILD-TYPE
  CLUS_1                           20                             19
  CLUS_2                           17                              7
  CLUS_3                            5                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XQ28) MUTATED       10     21      9      6
  AMP PEAK 19(XQ28) WILD-TYPE     26      5      7      6
D19V1, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                        10                          26
  CLUS_2                        21                           5
  CLUS_3                         9                           7
  CLUS_4                         6                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(XQ28) MUTATED        7      6     10     10      7
  AMP PEAK 19(XQ28) WILD-TYPE     11      5     10      8      4
D19V2, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                         7                          11
  CLUS_2                         6                           5
  CLUS_3                        10                          10
  CLUS_4                        10                           8
  CLUS_5                         7                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XQ28) MUTATED       10      4      7      6
  AMP PEAK 19(XQ28) WILD-TYPE      4      8      3      3
D19V3, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                        10                           4
  CLUS_2                         4                           8
  CLUS_3                         7                           3
  CLUS_4                         6                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(XQ28) MUTATED        6      5      6      1      2      3      4
  AMP PEAK 19(XQ28) WILD-TYPE      2      2      1      2      2      1      2
                             vv
clus                          CLUS_8
  AMP PEAK 19(XQ28) MUTATED        0
  AMP PEAK 19(XQ28) WILD-TYPE      6
D19V4, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                         6                           2
  CLUS_2                         5                           2
  CLUS_3                         6                           1
  CLUS_4                         1                           2
  CLUS_5                         2                           2
  CLUS_6                         3                           1
  CLUS_7                         4                           2
  CLUS_8                         0                           6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XQ28) MUTATED        6     10     11     13
  AMP PEAK 19(XQ28) WILD-TYPE     18      3      6     10
D19V5, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                         6                          18
  CLUS_2                        10                           3
  CLUS_3                        11                           6
  CLUS_4                        13                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(XQ28) MUTATED        8     14      1     17
  AMP PEAK 19(XQ28) WILD-TYPE     15      9      6      7
D19V6, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                         8                          15
  CLUS_2                        14                           9
  CLUS_3                         1                           6
  CLUS_4                        17                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XQ28) MUTATED       16     10     14
  AMP PEAK 19(XQ28) WILD-TYPE     20      6     12
D19V7, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                        16                          20
  CLUS_2                        10                           6
  CLUS_3                        14                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(XQ28) MUTATED        8     17      7      7      1
  AMP PEAK 19(XQ28) WILD-TYPE      8     10      4     13      3
D19V8, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                         8                           8
  CLUS_2                        17                          10
  CLUS_3                         7                           4
  CLUS_4                         7                          13
  CLUS_5                         1                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XQ28) MUTATED       14     11     14
  AMP PEAK 19(XQ28) WILD-TYPE     14     11     13
D19V9, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                        14                          14
  CLUS_2                        11                          11
  CLUS_3                        14                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(XQ28) MUTATED       18     17      4
  AMP PEAK 19(XQ28) WILD-TYPE     21      7     10
D19V10, multiclass
        clus
vv       AMP PEAK 19(XQ28) MUTATED AMP PEAK 19(XQ28) WILD-TYPE
  CLUS_1                        18                          21
  CLUS_2                        17                           7
  CLUS_3                         4                          10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       17      5      8      8
  DEL PEAK  1(1P36.23) WILD-TYPE     19     21      8      4
D20V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             19
  CLUS_2                            5                             21
  CLUS_3                            8                              8
  CLUS_4                            8                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED       13      5     10      2      4
  DEL PEAK  1(1P36.23) WILD-TYPE      5      6     10     16      7
D20V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           13                              5
  CLUS_2                            5                              6
  CLUS_3                           10                             10
  CLUS_4                            2                             16
  CLUS_5                            4                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED        8      5      3      3
  DEL PEAK  1(1P36.23) WILD-TYPE      6      7      7      6
D20V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            5                              7
  CLUS_3                            3                              7
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        4      1      1      3      1      2
  DEL PEAK  1(1P36.23) WILD-TYPE      4      6      6      0      3      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.23) MUTATED        3      4
  DEL PEAK  1(1P36.23) WILD-TYPE      3      2
D20V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            3                              0
  CLUS_5                            1                              3
  CLUS_6                            2                              2
  CLUS_7                            3                              3
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       15      6      4      8
  DEL PEAK  1(1P36.23) WILD-TYPE      9      7     13     15
D20V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            6                              7
  CLUS_3                            4                             13
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       16      9      0      8
  DEL PEAK  1(1P36.23) WILD-TYPE      7     14      7     16
D20V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                              7
  CLUS_2                            9                             14
  CLUS_3                            0                              7
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17      6     11
  DEL PEAK  1(1P36.23) WILD-TYPE     19     10     15
D20V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             19
  CLUS_2                            6                             10
  CLUS_3                           11                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED        8     10      3     11      2
  DEL PEAK  1(1P36.23) WILD-TYPE      8     17      8      9      2
D20V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                           10                             17
  CLUS_3                            3                              8
  CLUS_4                           11                              9
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       10     12     11
  DEL PEAK  1(1P36.23) WILD-TYPE     18     10     16
D20V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                           12                             10
  CLUS_3                           11                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       18      9      6
  DEL PEAK  1(1P36.23) WILD-TYPE     21     15      8
D20V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                            9                             15
  CLUS_3                            6                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  2(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q43) MUTATED        4      3      5      6
  DEL PEAK  2(1Q43) WILD-TYPE     32     23     11      6
D21V1, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         4                          32
  CLUS_2                         3                          23
  CLUS_3                         5                          11
  CLUS_4                         6                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q43) MUTATED        2      0      8      2      3
  DEL PEAK  2(1Q43) WILD-TYPE     16     11     12     16      8
D21V2, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         2                          16
  CLUS_2                         0                          11
  CLUS_3                         8                          12
  CLUS_4                         2                          16
  CLUS_5                         3                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q43) MUTATED        1      2      0      3
  DEL PEAK  2(1Q43) WILD-TYPE     13     10     10      6
D21V3, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         2                          10
  CLUS_3                         0                          10
  CLUS_4                         3                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q43) MUTATED        0      1      0      0      2      0      1
  DEL PEAK  2(1Q43) WILD-TYPE      8      6      7      3      2      4      5
                             vv
clus                          CLUS_8
  DEL PEAK  2(1Q43) MUTATED        2
  DEL PEAK  2(1Q43) WILD-TYPE      4
D21V4, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         0                           8
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           3
  CLUS_5                         2                           2
  CLUS_6                         0                           4
  CLUS_7                         1                           5
  CLUS_8                         2                           4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q43) MUTATED        3      2      5      4
  DEL PEAK  2(1Q43) WILD-TYPE     21     11     12     19
D21V5, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         3                          21
  CLUS_2                         2                          11
  CLUS_3                         5                          12
  CLUS_4                         4                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q43) MUTATED        1      6      2      5
  DEL PEAK  2(1Q43) WILD-TYPE     22     17      5     19
D21V6, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         1                          22
  CLUS_2                         6                          17
  CLUS_3                         2                           5
  CLUS_4                         5                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q43) MUTATED        6      2      7
  DEL PEAK  2(1Q43) WILD-TYPE     30     14     19
D21V7, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         6                          30
  CLUS_2                         2                          14
  CLUS_3                         7                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q43) MUTATED        5      5      2      2      1
  DEL PEAK  2(1Q43) WILD-TYPE     11     22      9     18      3
D21V8, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         5                          11
  CLUS_2                         5                          22
  CLUS_3                         2                           9
  CLUS_4                         2                          18
  CLUS_5                         1                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q43) MUTATED        4      2      8
  DEL PEAK  2(1Q43) WILD-TYPE     24     20     19
D21V9, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         4                          24
  CLUS_2                         2                          20
  CLUS_3                         8                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q43) MUTATED        5      4      5
  DEL PEAK  2(1Q43) WILD-TYPE     34     20      9
D21V10, multiclass
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  CLUS_1                         5                          34
  CLUS_2                         4                          20
  CLUS_3                         5                           9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        5      3      4      6
  DEL PEAK  3(2Q22.1) WILD-TYPE     31     23     12      6
D22V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           5                            31
  CLUS_2                           3                            23
  CLUS_3                           4                            12
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        1      0      8      2      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     17     11     12     16      6
D22V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                            17
  CLUS_2                           0                            11
  CLUS_3                           8                            12
  CLUS_4                           2                            16
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        2      2      3      3
  DEL PEAK  3(2Q22.1) WILD-TYPE     12     10      7      6
D22V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           2                            10
  CLUS_3                           3                             7
  CLUS_4                           3                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        1      1      1      0      2      1
  DEL PEAK  3(2Q22.1) WILD-TYPE      7      6      6      3      2      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2Q22.1) MUTATED        2      2
  DEL PEAK  3(2Q22.1) WILD-TYPE      4      4
D22V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           1                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             3
  CLUS_5                           2                             2
  CLUS_6                           1                             3
  CLUS_7                           2                             4
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        2      4      5      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     22      9     12     18
D22V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            22
  CLUS_2                           4                             9
  CLUS_3                           5                            12
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        2      8      0      6
  DEL PEAK  3(2Q22.1) WILD-TYPE     21     15      7     18
D22V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           8                            15
  CLUS_3                           0                             7
  CLUS_4                           6                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        6      2      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     30     14     18
D22V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            30
  CLUS_2                           2                            14
  CLUS_3                           8                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        4      7      2      2      1
  DEL PEAK  3(2Q22.1) WILD-TYPE     12     20      9     18      3
D22V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           7                            20
  CLUS_3                           2                             9
  CLUS_4                           2                            18
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        5      3      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     23     19     19
D22V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                           3                            19
  CLUS_3                           8                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        6      6      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     33     18     10
D22V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           6                            18
  CLUS_3                           4                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        5      3      7      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     31     23      9      6
D23V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            31
  CLUS_2                           3                            23
  CLUS_3                           7                             9
  CLUS_4                           6                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        4      0      8      2      5
  DEL PEAK  4(2Q37.3) WILD-TYPE     14     11     12     16      6
D23V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           0                            11
  CLUS_3                           8                            12
  CLUS_4                           2                            16
  CLUS_5                           5                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        4      2      3      1
  DEL PEAK  4(2Q37.3) WILD-TYPE     10     10      7      8
D23V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                            10
  CLUS_3                           3                             7
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        3      1      1      0      0      1
  DEL PEAK  4(2Q37.3) WILD-TYPE      5      6      6      3      4      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  4(2Q37.3) MUTATED        2      2
  DEL PEAK  4(2Q37.3) WILD-TYPE      4      4
D23V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           1                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             3
  CLUS_5                           0                             4
  CLUS_6                           1                             3
  CLUS_7                           2                             4
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        3      5      5      5
  DEL PEAK  4(2Q37.3) WILD-TYPE     21      8     12     18
D23V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            21
  CLUS_2                           5                             8
  CLUS_3                           5                            12
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        3      9      0      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     20     14      7     18
D23V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           9                            14
  CLUS_3                           0                             7
  CLUS_4                           6                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        9      2      8
  DEL PEAK  4(2Q37.3) WILD-TYPE     27     14     18
D23V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                            27
  CLUS_2                           2                            14
  CLUS_3                           8                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED        5      7      2      3      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     11     20      9     17      2
D23V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                            20
  CLUS_3                           2                             9
  CLUS_4                           3                            17
  CLUS_5                           2                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        5      6      8
  DEL PEAK  4(2Q37.3) WILD-TYPE     23     16     19
D23V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                           6                            16
  CLUS_3                           8                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        9      6      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     30     18     10
D23V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           6                            18
  CLUS_3                           4                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  5(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED       11      5      7      2
  DEL PEAK  5(3Q13.31) WILD-TYPE     25     21      9     10
D24V1, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                            5                             21
  CLUS_3                            7                              9
  CLUS_4                            2                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3Q13.31) MUTATED        6      1     10      3      1
  DEL PEAK  5(3Q13.31) WILD-TYPE     12     10     10     15     10
D24V2, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            1                             10
  CLUS_3                           10                             10
  CLUS_4                            3                             15
  CLUS_5                            1                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED        3      5      1      2
  DEL PEAK  5(3Q13.31) WILD-TYPE     11      7      9      7
D24V3, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            5                              7
  CLUS_3                            1                              9
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3Q13.31) MUTATED        1      2      1      2      2      0
  DEL PEAK  5(3Q13.31) WILD-TYPE      7      5      6      1      2      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  5(3Q13.31) MUTATED        1      2
  DEL PEAK  5(3Q13.31) WILD-TYPE      5      4
D24V4, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            2                              1
  CLUS_5                            2                              2
  CLUS_6                            0                              4
  CLUS_7                            1                              5
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED        7      2      8      4
  DEL PEAK  5(3Q13.31) WILD-TYPE     17     11      9     19
D24V5, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                            2                             11
  CLUS_3                            8                              9
  CLUS_4                            4                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q13.31) MUTATED        7     10      2      2
  DEL PEAK  5(3Q13.31) WILD-TYPE     16     13      5     22
D24V6, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           10                             13
  CLUS_3                            2                              5
  CLUS_4                            2                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       12      4      5
  DEL PEAK  5(3Q13.31) WILD-TYPE     24     12     21
D24V7, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            4                             12
  CLUS_3                            5                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3Q13.31) MUTATED        5      4      2      9      1
  DEL PEAK  5(3Q13.31) WILD-TYPE     11     23      9     11      3
D24V8, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            4                             23
  CLUS_3                            2                              9
  CLUS_4                            9                             11
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED        8      6      6
  DEL PEAK  5(3Q13.31) WILD-TYPE     20     16     21
D24V9, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                            8                             20
  CLUS_2                            6                             16
  CLUS_3                            6                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q13.31) MUTATED       13      4      3
  DEL PEAK  5(3Q13.31) WILD-TYPE     26     20     11
D24V10, multiclass
        clus
vv       DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE
  CLUS_1                           13                             26
  CLUS_2                            4                             20
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       17      3      5      0
  DEL PEAK  6(4Q34.3) WILD-TYPE     19     23     11     12
D25V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          17                            19
  CLUS_2                           3                            23
  CLUS_3                           5                            11
  CLUS_4                           0                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        9      1      5      3      1
  DEL PEAK  6(4Q34.3) WILD-TYPE      9     10     15     15     10
D25V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                           1                            10
  CLUS_3                           5                            15
  CLUS_4                           3                            15
  CLUS_5                           1                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        4      3      2      1
  DEL PEAK  6(4Q34.3) WILD-TYPE     10      9      8      8
D25V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           3                             9
  CLUS_3                           2                             8
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        1      2      1      2      1      0
  DEL PEAK  6(4Q34.3) WILD-TYPE      7      5      6      1      3      4
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  6(4Q34.3) MUTATED        2      1
  DEL PEAK  6(4Q34.3) WILD-TYPE      4      5
D25V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           0                             4
  CLUS_7                           2                             4
  CLUS_8                           1                             5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       11      2      3      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     13     11     14     21
D25V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           2                            11
  CLUS_3                           3                            14
  CLUS_4                           2                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       10      5      1      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     13     18      6     22
D25V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           5                            18
  CLUS_3                           1                             6
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       11      6      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     25     10     24
D25V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            25
  CLUS_2                           6                            10
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        2      7      0      9      1
  DEL PEAK  6(4Q34.3) WILD-TYPE     14     20     11     11      3
D25V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           7                            20
  CLUS_3                           0                            11
  CLUS_4                           9                            11
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        4     13      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     24      9     25
D25V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            24
  CLUS_2                          13                             9
  CLUS_3                           2                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       12      6      1
  DEL PEAK  6(4Q34.3) WILD-TYPE     27     18     13
D25V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          12                            27
  CLUS_2                           6                            18
  CLUS_3                           1                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       15      2      9      2
  DEL PEAK  7(4Q34.3) WILD-TYPE     21     24      7     10
D26V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          15                            21
  CLUS_2                           2                            24
  CLUS_3                           9                             7
  CLUS_4                           2                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q34.3) MUTATED       11      0      7      3      3
  DEL PEAK  7(4Q34.3) WILD-TYPE      7     11     13     15      8
D26V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          11                             7
  CLUS_2                           0                            11
  CLUS_3                           7                            13
  CLUS_4                           3                            15
  CLUS_5                           3                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        6      3      3      2
  DEL PEAK  7(4Q34.3) WILD-TYPE      8      9      7      7
D26V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           3                             9
  CLUS_3                           3                             7
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED        3      3      1      3      1      1
  DEL PEAK  7(4Q34.3) WILD-TYPE      5      4      6      0      3      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  7(4Q34.3) MUTATED        2      0
  DEL PEAK  7(4Q34.3) WILD-TYPE      4      6
D26V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           3                             4
  CLUS_3                           1                             6
  CLUS_4                           3                             0
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           2                             4
  CLUS_8                           0                             6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       11      4      4      4
  DEL PEAK  7(4Q34.3) WILD-TYPE     13      9     13     19
D26V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           4                             9
  CLUS_3                           4                            13
  CLUS_4                           4                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       10      8      1      4
  DEL PEAK  7(4Q34.3) WILD-TYPE     13     15      6     20
D26V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           8                            15
  CLUS_3                           1                             6
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       13      7      4
  DEL PEAK  7(4Q34.3) WILD-TYPE     23      9     22
D26V7, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          13                            23
  CLUS_2                           7                             9
  CLUS_3                           4                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q34.3) MUTATED        4      8      1     10      1
  DEL PEAK  7(4Q34.3) WILD-TYPE     12     19     10     10      3
D26V8, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           8                            19
  CLUS_3                           1                            10
  CLUS_4                          10                            10
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        5     15      4
  DEL PEAK  7(4Q34.3) WILD-TYPE     23      7     23
D26V9, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                          15                             7
  CLUS_3                           4                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       15      7      2
  DEL PEAK  7(4Q34.3) WILD-TYPE     24     17     12
D26V10, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                           7                            17
  CLUS_3                           2                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  8(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.1) MUTATED       17      4      8      1
  DEL PEAK  8(4Q35.1) WILD-TYPE     19     22      8     11
D27V1, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                          17                            19
  CLUS_2                           4                            22
  CLUS_3                           8                             8
  CLUS_4                           1                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q35.1) MUTATED       11      1      8      3      2
  DEL PEAK  8(4Q35.1) WILD-TYPE      7     10     12     15      9
D27V2, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                          11                             7
  CLUS_2                           1                            10
  CLUS_3                           8                            12
  CLUS_4                           3                            15
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.1) MUTATED        6      3      3      1
  DEL PEAK  8(4Q35.1) WILD-TYPE      8      9      7      8
D27V3, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           3                             9
  CLUS_3                           3                             7
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q35.1) MUTATED        2      3      1      2      1      1
  DEL PEAK  8(4Q35.1) WILD-TYPE      6      4      6      1      3      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(4Q35.1) MUTATED        3      0
  DEL PEAK  8(4Q35.1) WILD-TYPE      3      6
D27V4, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           3                             4
  CLUS_3                           1                             6
  CLUS_4                           2                             1
  CLUS_5                           1                             3
  CLUS_6                           1                             3
  CLUS_7                           3                             3
  CLUS_8                           0                             6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.1) MUTATED       11      4      6      3
  DEL PEAK  8(4Q35.1) WILD-TYPE     13      9     11     20
D27V5, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                           4                             9
  CLUS_3                           6                            11
  CLUS_4                           3                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.1) MUTATED       10     10      1      3
  DEL PEAK  8(4Q35.1) WILD-TYPE     13     13      6     21
D27V6, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          10                            13
  CLUS_3                           1                             6
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.1) MUTATED       13      7      5
  DEL PEAK  8(4Q35.1) WILD-TYPE     23      9     21
D27V7, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                          13                            23
  CLUS_2                           7                             9
  CLUS_3                           5                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q35.1) MUTATED        6      7      1     10      1
  DEL PEAK  8(4Q35.1) WILD-TYPE     10     20     10     10      3
D27V8, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                           6                            10
  CLUS_2                           7                            20
  CLUS_3                           1                            10
  CLUS_4                          10                            10
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.1) MUTATED        5     14      5
  DEL PEAK  8(4Q35.1) WILD-TYPE     23      8     22
D27V9, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                          14                             8
  CLUS_3                           5                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.1) MUTATED       14      6      4
  DEL PEAK  8(4Q35.1) WILD-TYPE     25     18     10
D27V10, multiclass
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                           6                            18
  CLUS_3                           4                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  9(6P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P24.3) MUTATED       11      2      3      4
  DEL PEAK  9(6P24.3) WILD-TYPE     25     24     13      8
D28V1, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                          11                            25
  CLUS_2                           2                            24
  CLUS_3                           3                            13
  CLUS_4                           4                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P24.3) MUTATED        4      2      3      5      2
  DEL PEAK  9(6P24.3) WILD-TYPE     14      9     17     13      9
D28V2, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           2                             9
  CLUS_3                           3                            17
  CLUS_4                           5                            13
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P24.3) MUTATED        2      3      1      3
  DEL PEAK  9(6P24.3) WILD-TYPE     12      9      9      6
D28V3, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             9
  CLUS_3                           1                             9
  CLUS_4                           3                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P24.3) MUTATED        2      0      0      1      2      1
  DEL PEAK  9(6P24.3) WILD-TYPE      6      7      7      2      2      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(6P24.3) MUTATED        1      2
  DEL PEAK  9(6P24.3) WILD-TYPE      5      4
D28V4, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           0                             7
  CLUS_3                           0                             7
  CLUS_4                           1                             2
  CLUS_5                           2                             2
  CLUS_6                           1                             3
  CLUS_7                           1                             5
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P24.3) MUTATED        7      2      2      5
  DEL PEAK  9(6P24.3) WILD-TYPE     17     11     15     18
D28V5, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           2                            11
  CLUS_3                           2                            15
  CLUS_4                           5                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P24.3) MUTATED        5      4      3      4
  DEL PEAK  9(6P24.3) WILD-TYPE     18     19      4     20
D28V6, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           4                            19
  CLUS_3                           3                             4
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P24.3) MUTATED        8      3      5
  DEL PEAK  9(6P24.3) WILD-TYPE     28     13     21
D28V7, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           8                            28
  CLUS_2                           3                            13
  CLUS_3                           5                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P24.3) MUTATED        1      5      1      7      2
  DEL PEAK  9(6P24.3) WILD-TYPE     15     22     10     13      2
D28V8, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           5                            22
  CLUS_3                           1                            10
  CLUS_4                           7                            13
  CLUS_5                           2                             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P24.3) MUTATED        6      4      6
  DEL PEAK  9(6P24.3) WILD-TYPE     22     18     21
D28V9, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           6                            22
  CLUS_2                           4                            18
  CLUS_3                           6                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P24.3) MUTATED        9      3      4
  DEL PEAK  9(6P24.3) WILD-TYPE     30     21     10
D28V10, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           3                            21
  CLUS_3                           4                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 10(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q26) MUTATED       11      2      4      4
  DEL PEAK 10(6Q26) WILD-TYPE     25     24     12      8
D29V1, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        11                          25
  CLUS_2                         2                          24
  CLUS_3                         4                          12
  CLUS_4                         4                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q26) MUTATED        5      3      3      4      3
  DEL PEAK 10(6Q26) WILD-TYPE     13      8     17     14      8
D29V2, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         5                          13
  CLUS_2                         3                           8
  CLUS_3                         3                          17
  CLUS_4                         4                          14
  CLUS_5                         3                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q26) MUTATED        4      3      1      3
  DEL PEAK 10(6Q26) WILD-TYPE     10      9      9      6
D29V3, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         3                           9
  CLUS_3                         1                           9
  CLUS_4                         3                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q26) MUTATED        2      1      0      1      2      0      2
  DEL PEAK 10(6Q26) WILD-TYPE      6      6      7      2      2      4      4
                             vv
clus                          CLUS_8
  DEL PEAK 10(6Q26) MUTATED        3
  DEL PEAK 10(6Q26) WILD-TYPE      3
D29V4, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         1                           2
  CLUS_5                         2                           2
  CLUS_6                         0                           4
  CLUS_7                         2                           4
  CLUS_8                         3                           3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q26) MUTATED        9      2      3      4
  DEL PEAK 10(6Q26) WILD-TYPE     15     11     14     19
D29V5, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         9                          15
  CLUS_2                         2                          11
  CLUS_3                         3                          14
  CLUS_4                         4                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q26) MUTATED        8      5      2      3
  DEL PEAK 10(6Q26) WILD-TYPE     15     18      5     21
D29V6, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         8                          15
  CLUS_2                         5                          18
  CLUS_3                         2                           5
  CLUS_4                         3                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       10      4      4
  DEL PEAK 10(6Q26) WILD-TYPE     26     12     22
D29V7, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        10                          26
  CLUS_2                         4                          12
  CLUS_3                         4                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q26) MUTATED        2      7      1      6      2
  DEL PEAK 10(6Q26) WILD-TYPE     14     20     10     14      2
D29V8, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         2                          14
  CLUS_2                         7                          20
  CLUS_3                         1                          10
  CLUS_4                         6                          14
  CLUS_5                         2                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED        6      8      4
  DEL PEAK 10(6Q26) WILD-TYPE     22     14     23
D29V9, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         6                          22
  CLUS_2                         8                          14
  CLUS_3                         4                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       11      4      3
  DEL PEAK 10(6Q26) WILD-TYPE     28     20     11
D29V10, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        11                          28
  CLUS_2                         4                          20
  CLUS_3                         3                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 11(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.3) MUTATED        8      0      2      1
  DEL PEAK 11(7Q36.3) WILD-TYPE     28     26     14     11
D30V1, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           8                            28
  CLUS_2                           0                            26
  CLUS_3                           2                            14
  CLUS_4                           1                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.3) MUTATED        4      2      1      1      0
  DEL PEAK 11(7Q36.3) WILD-TYPE     14      9     19     17     11
D30V2, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           2                             9
  CLUS_3                           1                            19
  CLUS_4                           1                            17
  CLUS_5                           0                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.3) MUTATED        1      2      0      0
  DEL PEAK 11(7Q36.3) WILD-TYPE     13     10     10      9
D30V3, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                            10
  CLUS_3                           0                            10
  CLUS_4                           0                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(7Q36.3) MUTATED        1      0      0      0      0      1
  DEL PEAK 11(7Q36.3) WILD-TYPE      7      7      7      3      4      3
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 11(7Q36.3) MUTATED        0      1
  DEL PEAK 11(7Q36.3) WILD-TYPE      6      5
D30V4, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           0                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             3
  CLUS_5                           0                             4
  CLUS_6                           1                             3
  CLUS_7                           0                             6
  CLUS_8                           1                             5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.3) MUTATED        5      0      1      1
  DEL PEAK 11(7Q36.3) WILD-TYPE     19     13     16     22
D30V5, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           0                            13
  CLUS_3                           1                            16
  CLUS_4                           1                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.3) MUTATED        4      1      1      1
  DEL PEAK 11(7Q36.3) WILD-TYPE     19     22      6     23
D30V6, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           1                            22
  CLUS_3                           1                             6
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.3) MUTATED        4      2      2
  DEL PEAK 11(7Q36.3) WILD-TYPE     32     14     24
D30V7, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           4                            32
  CLUS_2                           2                            14
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q36.3) MUTATED        2      2      1      2      1
  DEL PEAK 11(7Q36.3) WILD-TYPE     14     25     10     18      3
D30V8, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           2                            14
  CLUS_2                           2                            25
  CLUS_3                           1                            10
  CLUS_4                           2                            18
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.3) MUTATED        1      5      2
  DEL PEAK 11(7Q36.3) WILD-TYPE     27     17     25
D30V9, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           1                            27
  CLUS_2                           5                            17
  CLUS_3                           2                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.3) MUTATED        4      1      3
  DEL PEAK 11(7Q36.3) WILD-TYPE     35     23     11
D30V10, multiclass
        clus
vv       DEL PEAK 11(7Q36.3) MUTATED DEL PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           1                            23
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 12(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED       16      2      4      2
  DEL PEAK 12(9P23) WILD-TYPE     20     24     12     10
D31V1, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        16                          20
  CLUS_2                         2                          24
  CLUS_3                         4                          12
  CLUS_4                         2                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9P23) MUTATED       11      2      2      4      2
  DEL PEAK 12(9P23) WILD-TYPE      7      9     18     14      9
D31V2, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        11                           7
  CLUS_2                         2                           9
  CLUS_3                         2                          18
  CLUS_4                         4                          14
  CLUS_5                         2                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED        7      2      1      3
  DEL PEAK 12(9P23) WILD-TYPE      7     10      9      6
D31V3, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                         2                          10
  CLUS_3                         1                           9
  CLUS_4                         3                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(9P23) MUTATED        3      1      0      2      3      0      3
  DEL PEAK 12(9P23) WILD-TYPE      5      6      7      1      1      4      3
                             vv
clus                          CLUS_8
  DEL PEAK 12(9P23) MUTATED        1
  DEL PEAK 12(9P23) WILD-TYPE      5
D31V4, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         3                           5
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         2                           1
  CLUS_5                         3                           1
  CLUS_6                         0                           4
  CLUS_7                         3                           3
  CLUS_8                         1                           5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED       15      1      4      1
  DEL PEAK 12(9P23) WILD-TYPE      9     12     13     22
D31V5, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        15                           9
  CLUS_2                         1                          12
  CLUS_3                         4                          13
  CLUS_4                         1                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P23) MUTATED       13      4      2      2
  DEL PEAK 12(9P23) WILD-TYPE     10     19      5     22
D31V6, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        13                          10
  CLUS_2                         4                          19
  CLUS_3                         2                           5
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P23) MUTATED       11      8      2
  DEL PEAK 12(9P23) WILD-TYPE     25      8     24
D31V7, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        11                          25
  CLUS_2                         8                           8
  CLUS_3                         2                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9P23) MUTATED        5      6      1      9      0
  DEL PEAK 12(9P23) WILD-TYPE     11     21     10     11      4
D31V8, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         5                          11
  CLUS_2                         6                          21
  CLUS_3                         1                          10
  CLUS_4                         9                          11
  CLUS_5                         0                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P23) MUTATED        6     11      3
  DEL PEAK 12(9P23) WILD-TYPE     22     11     24
D31V9, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                         6                          22
  CLUS_2                        11                          11
  CLUS_3                         3                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P23) MUTATED       12      5      3
  DEL PEAK 12(9P23) WILD-TYPE     27     19     11
D31V10, multiclass
        clus
vv       DEL PEAK 12(9P23) MUTATED DEL PEAK 12(9P23) WILD-TYPE
  CLUS_1                        12                          27
  CLUS_2                         5                          19
  CLUS_3                         3                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 13(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       18      3      4      2
  DEL PEAK 13(9P21.3) WILD-TYPE     18     23     12     10
D32V1, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          18                            18
  CLUS_2                           3                            23
  CLUS_3                           4                            12
  CLUS_4                           2                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED       12      3      2      5      2
  DEL PEAK 13(9P21.3) WILD-TYPE      6      8     18     13      9
D32V2, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          12                             6
  CLUS_2                           3                             8
  CLUS_3                           2                            18
  CLUS_4                           5                            13
  CLUS_5                           2                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED        7      3      1      4
  DEL PEAK 13(9P21.3) WILD-TYPE      7      9      9      5
D32V3, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           3                             9
  CLUS_3                           1                             9
  CLUS_4                           4                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9P21.3) MUTATED        3      1      1      2      3      0
  DEL PEAK 13(9P21.3) WILD-TYPE      5      6      6      1      1      4
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 13(9P21.3) MUTATED        3      2
  DEL PEAK 13(9P21.3) WILD-TYPE      3      4
D32V4, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           1                             6
  CLUS_3                           1                             6
  CLUS_4                           2                             1
  CLUS_5                           3                             1
  CLUS_6                           0                             4
  CLUS_7                           3                             3
  CLUS_8                           2                             4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       17      1      4      2
  DEL PEAK 13(9P21.3) WILD-TYPE      7     12     13     21
D32V5, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          17                             7
  CLUS_2                           1                            12
  CLUS_3                           4                            13
  CLUS_4                           2                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P21.3) MUTATED       15      4      2      3
  DEL PEAK 13(9P21.3) WILD-TYPE      8     19      5     21
D32V6, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          15                             8
  CLUS_2                           4                            19
  CLUS_3                           2                             5
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED       13      8      3
  DEL PEAK 13(9P21.3) WILD-TYPE     23      8     23
D32V7, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          13                            23
  CLUS_2                           8                             8
  CLUS_3                           3                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P21.3) MUTATED        5      7      1     10      1
  DEL PEAK 13(9P21.3) WILD-TYPE     11     20     10     10      3
D32V8, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           7                            20
  CLUS_3                           1                            10
  CLUS_4                          10                            10
  CLUS_5                           1                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED        7     12      4
  DEL PEAK 13(9P21.3) WILD-TYPE     21     10     23
D32V9, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                           7                            21
  CLUS_2                          12                            10
  CLUS_3                           4                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P21.3) MUTATED       14      6      3
  DEL PEAK 13(9P21.3) WILD-TYPE     25     18     11
D32V10, multiclass
        clus
vv       DEL PEAK 13(9P21.3) MUTATED DEL PEAK 13(9P21.3) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                           6                            18
  CLUS_3                           3                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 14(10Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10Q23.1) MUTATED        5      1      2      3
  DEL PEAK 14(10Q23.1) WILD-TYPE     31     25     14      9
D33V1, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            5                             31
  CLUS_2                            1                             25
  CLUS_3                            2                             14
  CLUS_4                            3                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(10Q23.1) MUTATED        1      0      3      1      3
  DEL PEAK 14(10Q23.1) WILD-TYPE     17     11     17     17      8
D33V2, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            0                             11
  CLUS_3                            3                             17
  CLUS_4                            1                             17
  CLUS_5                            3                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10Q23.1) MUTATED        1      1      1      1
  DEL PEAK 14(10Q23.1) WILD-TYPE     13     11      9      8
D33V3, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             11
  CLUS_3                            1                              9
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(10Q23.1) MUTATED        0      1      0      0      1      0
  DEL PEAK 14(10Q23.1) WILD-TYPE      8      6      7      3      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 14(10Q23.1) MUTATED        2      0
  DEL PEAK 14(10Q23.1) WILD-TYPE      4      6
D33V4, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            2                              4
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10Q23.1) MUTATED        2      0      4      2
  DEL PEAK 14(10Q23.1) WILD-TYPE     22     13     13     21
D33V5, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            2                             22
  CLUS_2                            0                             13
  CLUS_3                            4                             13
  CLUS_4                            2                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(10Q23.1) MUTATED        2      2      0      4
  DEL PEAK 14(10Q23.1) WILD-TYPE     21     21      7     20
D33V6, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            2                             21
  CLUS_3                            0                              7
  CLUS_4                            4                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q23.1) MUTATED        4      1      3
  DEL PEAK 14(10Q23.1) WILD-TYPE     32     15     23
D33V7, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            1                             15
  CLUS_3                            3                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(10Q23.1) MUTATED        1      4      1      2      0
  DEL PEAK 14(10Q23.1) WILD-TYPE     15     23     10     18      4
D33V8, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            4                             23
  CLUS_3                            1                             10
  CLUS_4                            2                             18
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q23.1) MUTATED        3      2      3
  DEL PEAK 14(10Q23.1) WILD-TYPE     25     20     24
D33V9, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            3                             25
  CLUS_2                            2                             20
  CLUS_3                            3                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(10Q23.1) MUTATED        4      4      0
  DEL PEAK 14(10Q23.1) WILD-TYPE     35     20     14
D33V10, multiclass
        clus
vv       DEL PEAK 14(10Q23.1) MUTATED DEL PEAK 14(10Q23.1) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            4                             20
  CLUS_3                            0                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 15(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.5) MUTATED        7      5      7      8
  DEL PEAK 15(11P15.5) WILD-TYPE     29     21      9      4
D34V1, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            5                             21
  CLUS_3                            7                              9
  CLUS_4                            8                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(11P15.5) MUTATED        4      3     12      2      4
  DEL PEAK 15(11P15.5) WILD-TYPE     14      8      8     16      7
D34V2, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            3                              8
  CLUS_3                           12                              8
  CLUS_4                            2                             16
  CLUS_5                            4                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.5) MUTATED        2      5      3      2
  DEL PEAK 15(11P15.5) WILD-TYPE     12      7      7      7
D34V3, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                              7
  CLUS_3                            3                              7
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11P15.5) MUTATED        1      2      1      0      1      2
  DEL PEAK 15(11P15.5) WILD-TYPE      7      5      6      3      3      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 15(11P15.5) MUTATED        2      3
  DEL PEAK 15(11P15.5) WILD-TYPE      4      3
D34V4, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            2                              2
  CLUS_7                            2                              4
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.5) MUTATED        4      3      9      8
  DEL PEAK 15(11P15.5) WILD-TYPE     20     10      8     15
D34V5, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            3                             10
  CLUS_3                            9                              8
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.5) MUTATED        4     11      0      9
  DEL PEAK 15(11P15.5) WILD-TYPE     19     12      7     15
D34V6, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                           11                             12
  CLUS_3                            0                              7
  CLUS_4                            9                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.5) MUTATED       12      2     11
  DEL PEAK 15(11P15.5) WILD-TYPE     24     14     15
D34V7, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            2                             14
  CLUS_3                           11                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(11P15.5) MUTATED        7      7      4      5      2
  DEL PEAK 15(11P15.5) WILD-TYPE      9     20      7     15      2
D34V8, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            7                             20
  CLUS_3                            4                              7
  CLUS_4                            5                             15
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.5) MUTATED        8      5     11
  DEL PEAK 15(11P15.5) WILD-TYPE     20     17     16
D34V9, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                            8                             20
  CLUS_2                            5                             17
  CLUS_3                           11                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.5) MUTATED       12      6      6
  DEL PEAK 15(11P15.5) WILD-TYPE     27     18      8
D34V10, multiclass
        clus
vv       DEL PEAK 15(11P15.5) MUTATED DEL PEAK 15(11P15.5) WILD-TYPE
  CLUS_1                           12                             27
  CLUS_2                            6                             18
  CLUS_3                            6                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 16(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        9      3      6      7
  DEL PEAK 16(11Q14.1) WILD-TYPE     27     23     10      5
D35V1, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                            3                             23
  CLUS_3                            6                             10
  CLUS_4                            7                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11Q14.1) MUTATED        2      1     11      3      5
  DEL PEAK 16(11Q14.1) WILD-TYPE     16     10      9     15      6
D35V2, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            1                             10
  CLUS_3                           11                              9
  CLUS_4                            3                             15
  CLUS_5                            5                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        3      3      3      2
  DEL PEAK 16(11Q14.1) WILD-TYPE     11      9      7      7
D35V3, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              9
  CLUS_3                            3                              7
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(11Q14.1) MUTATED        1      1      1      0      1      1
  DEL PEAK 16(11Q14.1) WILD-TYPE      7      6      6      3      3      3
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 16(11Q14.1) MUTATED        3      3
  DEL PEAK 16(11Q14.1) WILD-TYPE      3      3
D35V4, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            0                              3
  CLUS_5                            1                              3
  CLUS_6                            1                              3
  CLUS_7                            3                              3
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        5      2      8      7
  DEL PEAK 16(11Q14.1) WILD-TYPE     19     11      9     16
D35V5, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            2                             11
  CLUS_3                            8                              9
  CLUS_4                            7                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q14.1) MUTATED        4      9      1      8
  DEL PEAK 16(11Q14.1) WILD-TYPE     19     14      6     16
D35V6, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            9                             14
  CLUS_3                            1                              6
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q14.1) MUTATED       11      2      9
  DEL PEAK 16(11Q14.1) WILD-TYPE     25     14     17
D35V7, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           11                             25
  CLUS_2                            2                             14
  CLUS_3                            9                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11Q14.1) MUTATED        4      6      3      7      2
  DEL PEAK 16(11Q14.1) WILD-TYPE     12     21      8     13      2
D35V8, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            6                             21
  CLUS_3                            3                              8
  CLUS_4                            7                             13
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q14.1) MUTATED        7      4     10
  DEL PEAK 16(11Q14.1) WILD-TYPE     21     18     17
D35V9, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            7                             21
  CLUS_2                            4                             18
  CLUS_3                           10                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q14.1) MUTATED       11      5      5
  DEL PEAK 16(11Q14.1) WILD-TYPE     28     19      9
D35V10, multiclass
        clus
vv       DEL PEAK 16(11Q14.1) MUTATED DEL PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                            5                             19
  CLUS_3                            5                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 17(12Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q14.2) MUTATED        5      0      0      0
  DEL PEAK 17(12Q14.2) WILD-TYPE     31     26     16     12
D36V1, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            5                             31
  CLUS_2                            0                             26
  CLUS_3                            0                             16
  CLUS_4                            0                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12Q14.2) MUTATED        1      1      0      3      0
  DEL PEAK 17(12Q14.2) WILD-TYPE     17     10     20     15     11
D36V2, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            1                             10
  CLUS_3                            0                             20
  CLUS_4                            3                             15
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q14.2) MUTATED        0      1      0      1
  DEL PEAK 17(12Q14.2) WILD-TYPE     14     11     10      8
D36V3, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 17(12Q14.2) MUTATED"
clus
  DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE 
                             2                             43 
                    TCGA-OR-A5J2                     TCGA-OR-A5J3 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J6                     TCGA-OR-A5J7 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J8                     TCGA-OR-A5J9 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JA                     TCGA-OR-A5JP 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JR                     TCGA-OR-A5JS 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JT                     TCGA-OR-A5JV 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JW                     TCGA-OR-A5JY 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JZ                     TCGA-OR-A5K0 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K1                     TCGA-OR-A5K3 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K4                     TCGA-OR-A5K5 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K6                     TCGA-OR-A5K8 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KO                     TCGA-OR-A5KU 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KW                     TCGA-OR-A5KX 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KY                     TCGA-OR-A5KZ 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LD                     TCGA-OR-A5LG 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LH                     TCGA-OR-A5LJ 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LK                     TCGA-OR-A5LM 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LN                     TCGA-OR-A5LO 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LP                     TCGA-OR-A5LS 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LT                     TCGA-OU-A5PI 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-PA-A5YG                     TCGA-PK-A5H9 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-PK-A5HA 
"DEL PEAK 17(12Q14.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(12Q14.2) MUTATED        0      0      0      0      1      0
  DEL PEAK 17(12Q14.2) WILD-TYPE      8      7      7      3      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 17(12Q14.2) MUTATED        0      1
  DEL PEAK 17(12Q14.2) WILD-TYPE      6      5
D36V4, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 17(12Q14.2) MUTATED"
clus
  DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE 
                             2                             43 
                    TCGA-OR-A5J2                     TCGA-OR-A5J3 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J6                     TCGA-OR-A5J7 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5J8                     TCGA-OR-A5J9 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JA                     TCGA-OR-A5JP 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JR                     TCGA-OR-A5JS 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JT                     TCGA-OR-A5JV 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JW                     TCGA-OR-A5JY 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5JZ                     TCGA-OR-A5K0 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K1                     TCGA-OR-A5K3 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K4                     TCGA-OR-A5K5 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5K6                     TCGA-OR-A5K8 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KO                     TCGA-OR-A5KU 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KW                     TCGA-OR-A5KX 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5KY                     TCGA-OR-A5KZ 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LD                     TCGA-OR-A5LG 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LH                     TCGA-OR-A5LJ 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LK                     TCGA-OR-A5LM 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LN                     TCGA-OR-A5LO 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LP                     TCGA-OR-A5LS 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-OR-A5LT                     TCGA-OU-A5PI 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-PA-A5YG                     TCGA-PK-A5H9 
"DEL PEAK 17(12Q14.2) WILD-TYPE" "DEL PEAK 17(12Q14.2) WILD-TYPE" 
                    TCGA-PK-A5HA 
"DEL PEAK 17(12Q14.2) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q14.2) MUTATED        4      0      0      1
  DEL PEAK 17(12Q14.2) WILD-TYPE     20     13     17     22
D36V5, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            0                             13
  CLUS_3                            0                             17
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q14.2) MUTATED        2      0      3      0
  DEL PEAK 17(12Q14.2) WILD-TYPE     21     23      4     24
D36V6, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            0                             23
  CLUS_3                            3                              4
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q14.2) MUTATED        2      2      1
  DEL PEAK 17(12Q14.2) WILD-TYPE     34     14     25
D36V7, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            2                             34
  CLUS_2                            2                             14
  CLUS_3                            1                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12Q14.2) MUTATED        0      2      0      2      1
  DEL PEAK 17(12Q14.2) WILD-TYPE     16     25     11     18      3
D36V8, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            2                             25
  CLUS_3                            0                             11
  CLUS_4                            2                             18
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q14.2) MUTATED        2      2      1
  DEL PEAK 17(12Q14.2) WILD-TYPE     26     20     26
D36V9, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                            2                             20
  CLUS_3                            1                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q14.2) MUTATED        3      0      2
  DEL PEAK 17(12Q14.2) WILD-TYPE     36     24     12
D36V10, multiclass
        clus
vv       DEL PEAK 17(12Q14.2) MUTATED DEL PEAK 17(12Q14.2) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            0                             24
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 18(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED       21      5      7      9
  DEL PEAK 18(13Q14.2) WILD-TYPE     15     21      9      3
D37V1, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           21                             15
  CLUS_2                            5                             21
  CLUS_3                            7                              9
  CLUS_4                            9                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(13Q14.2) MUTATED       11      2     11      5      4
  DEL PEAK 18(13Q14.2) WILD-TYPE      7      9      9     13      7
D37V2, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           11                              7
  CLUS_2                            2                              9
  CLUS_3                           11                              9
  CLUS_4                            5                             13
  CLUS_5                            4                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED        7      5      3      5
  DEL PEAK 18(13Q14.2) WILD-TYPE      7      7      7      4
D37V3, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            7                              7
  CLUS_2                            5                              7
  CLUS_3                            3                              7
  CLUS_4                            5                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(13Q14.2) MUTATED        4      3      2      2      3      1
  DEL PEAK 18(13Q14.2) WILD-TYPE      4      4      5      1      1      3
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(13Q14.2) MUTATED        2      3
  DEL PEAK 18(13Q14.2) WILD-TYPE      4      3
D37V4, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            3                              4
  CLUS_3                            2                              5
  CLUS_4                            2                              1
  CLUS_5                            3                              1
  CLUS_6                            1                              3
  CLUS_7                            2                              4
  CLUS_8                            3                              3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED       13      3      7      9
  DEL PEAK 18(13Q14.2) WILD-TYPE     11     10     10     14
D37V5, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                            3                             10
  CLUS_3                            7                             10
  CLUS_4                            9                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q14.2) MUTATED       12     10      2      8
  DEL PEAK 18(13Q14.2) WILD-TYPE     11     13      5     16
D37V6, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           12                             11
  CLUS_2                           10                             13
  CLUS_3                            2                              5
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q14.2) MUTATED       15      7     11
  DEL PEAK 18(13Q14.2) WILD-TYPE     21      9     15
D37V7, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           15                             21
  CLUS_2                            7                              9
  CLUS_3                           11                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(13Q14.2) MUTATED        5     12      3     11      2
  DEL PEAK 18(13Q14.2) WILD-TYPE     11     15      8      9      2
D37V8, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                           12                             15
  CLUS_3                            3                              8
  CLUS_4                           11                              9
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q14.2) MUTATED       10     12     11
  DEL PEAK 18(13Q14.2) WILD-TYPE     18     10     16
D37V9, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                           12                             10
  CLUS_3                           11                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q14.2) MUTATED       18      9      6
  DEL PEAK 18(13Q14.2) WILD-TYPE     21     15      8
D37V10, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                            9                             15
  CLUS_3                            6                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 19(14Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q21.2) MUTATED        7      3      3      7
  DEL PEAK 19(14Q21.2) WILD-TYPE     29     23     13      5
D38V1, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            3                             23
  CLUS_3                            3                             13
  CLUS_4                            7                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q21.2) MUTATED        3      2      4      5      3
  DEL PEAK 19(14Q21.2) WILD-TYPE     15      9     16     13      8
D38V2, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                            2                              9
  CLUS_3                            4                             16
  CLUS_4                            5                             13
  CLUS_5                            3                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q21.2) MUTATED        3      2      4      2
  DEL PEAK 19(14Q21.2) WILD-TYPE     11     10      6      7
D38V3, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                             10
  CLUS_3                            4                              6
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(14Q21.2) MUTATED        2      1      2      1      2      2
  DEL PEAK 19(14Q21.2) WILD-TYPE      6      6      5      2      2      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 19(14Q21.2) MUTATED        1      0
  DEL PEAK 19(14Q21.2) WILD-TYPE      5      6
D38V4, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              6
  CLUS_3                            2                              5
  CLUS_4                            1                              2
  CLUS_5                            2                              2
  CLUS_6                            2                              2
  CLUS_7                            1                              5
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q21.2) MUTATED        5      1      3      8
  DEL PEAK 19(14Q21.2) WILD-TYPE     19     12     14     15
D38V5, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            5                             19
  CLUS_2                            1                             12
  CLUS_3                            3                             14
  CLUS_4                            8                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(14Q21.2) MUTATED        3      4      3      7
  DEL PEAK 19(14Q21.2) WILD-TYPE     20     19      4     17
D38V6, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            4                             19
  CLUS_3                            3                              4
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q21.2) MUTATED        7      2      8
  DEL PEAK 19(14Q21.2) WILD-TYPE     29     14     18
D38V7, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            7                             29
  CLUS_2                            2                             14
  CLUS_3                            8                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(14Q21.2) MUTATED        3      6      4      4      0
  DEL PEAK 19(14Q21.2) WILD-TYPE     13     21      7     16      4
D38V8, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            6                             21
  CLUS_3                            4                              7
  CLUS_4                            4                             16
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q21.2) MUTATED        5      3      9
  DEL PEAK 19(14Q21.2) WILD-TYPE     23     19     18
D38V9, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            5                             23
  CLUS_2                            3                             19
  CLUS_3                            9                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(14Q21.2) MUTATED        7      4      6
  DEL PEAK 19(14Q21.2) WILD-TYPE     32     20      8
D38V10, multiclass
        clus
vv       DEL PEAK 19(14Q21.2) MUTATED DEL PEAK 19(14Q21.2) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            4                             20
  CLUS_3                            6                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 20(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        4      0      3      0
  DEL PEAK 20(16P13.3) WILD-TYPE     32     26     13     12
D39V1, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            0                             26
  CLUS_3                            3                             13
  CLUS_4                            0                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16P13.3) MUTATED        2      0      2      3      0
  DEL PEAK 20(16P13.3) WILD-TYPE     16     11     18     15     11
D39V2, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            0                             11
  CLUS_3                            2                             18
  CLUS_4                            3                             15
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        2      1      1      2
  DEL PEAK 20(16P13.3) WILD-TYPE     12     11      9      7
D39V3, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            1                             11
  CLUS_3                            1                              9
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16P13.3) MUTATED        1      1      1      1      2      0
  DEL PEAK 20(16P13.3) WILD-TYPE      7      6      6      2      2      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 20(16P13.3) MUTATED        0      0
  DEL PEAK 20(16P13.3) WILD-TYPE      6      6
D39V4, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              2
  CLUS_5                            2                              2
  CLUS_6                            0                              4
  CLUS_7                            0                              6
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        4      1      1      1
  DEL PEAK 20(16P13.3) WILD-TYPE     20     12     16     22
D39V5, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            1                             12
  CLUS_3                            1                             16
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16P13.3) MUTATED        2      2      3      0
  DEL PEAK 20(16P13.3) WILD-TYPE     21     21      4     24
D39V6, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            2                             21
  CLUS_3                            3                              4
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.3) MUTATED        3      4      0
  DEL PEAK 20(16P13.3) WILD-TYPE     33     12     26
D39V7, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            3                             33
  CLUS_2                            4                             12
  CLUS_3                            0                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16P13.3) MUTATED        0      4      1      2      0
  DEL PEAK 20(16P13.3) WILD-TYPE     16     23     10     18      4
D39V8, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            4                             23
  CLUS_3                            1                             10
  CLUS_4                            2                             18
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.3) MUTATED        2      5      0
  DEL PEAK 20(16P13.3) WILD-TYPE     26     17     27
D39V9, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                            5                             17
  CLUS_3                            0                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16P13.3) MUTATED        3      2      2
  DEL PEAK 20(16P13.3) WILD-TYPE     36     22     12
D39V10, multiclass
        clus
vv       DEL PEAK 20(16P13.3) MUTATED DEL PEAK 20(16P13.3) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            2                             22
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 21(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        9      0      2      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     27     26     14     12
D40V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            9                             27
  CLUS_2                            0                             26
  CLUS_3                            2                             14
  CLUS_4                            0                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        3      2      1      2      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     15      9     19     16     11
D40V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             15
  CLUS_2                            2                              9
  CLUS_3                            1                             19
  CLUS_4                            2                             16
  CLUS_5                            0                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        3      2      0      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     11     10     10      8
D40V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                             10
  CLUS_3                            0                             10
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(16Q23.1) MUTATED        2      0      0      1      1      0
  DEL PEAK 21(16Q23.1) WILD-TYPE      6      7      7      2      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 21(16Q23.1) MUTATED        0      2
  DEL PEAK 21(16Q23.1) WILD-TYPE      6      4
D40V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            0                              7
  CLUS_3                            0                              7
  CLUS_4                            1                              2
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            0                              6
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        6      1      0      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     18     12     17     22
D40V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            1                             12
  CLUS_3                            0                             17
  CLUS_4                            1                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(16Q23.1) MUTATED        5      1      2      0
  DEL PEAK 21(16Q23.1) WILD-TYPE     18     22      5     24
D40V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            1                             22
  CLUS_3                            2                              5
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        4      3      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     32     13     25
D40V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            3                             13
  CLUS_3                            1                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(16Q23.1) MUTATED        1      3      0      2      2
  DEL PEAK 21(16Q23.1) WILD-TYPE     15     24     11     18      2
D40V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            3                             24
  CLUS_3                            0                             11
  CLUS_4                            2                             18
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        1      6      1
  DEL PEAK 21(16Q23.1) WILD-TYPE     27     16     26
D40V9, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                            6                             16
  CLUS_3                            1                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(16Q23.1) MUTATED        5      1      2
  DEL PEAK 21(16Q23.1) WILD-TYPE     34     23     12
D40V10, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            1                             23
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 22(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED       12      3      8      1
  DEL PEAK 22(17Q11.2) WILD-TYPE     24     23      8     11
D41V1, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                           12                             24
  CLUS_2                            3                             23
  CLUS_3                            8                              8
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17Q11.2) MUTATED        7      0     11      4      1
  DEL PEAK 22(17Q11.2) WILD-TYPE     11     11      9     14     10
D41V2, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            7                             11
  CLUS_2                            0                             11
  CLUS_3                           11                              9
  CLUS_4                            4                             14
  CLUS_5                            1                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED        6      3      2      2
  DEL PEAK 22(17Q11.2) WILD-TYPE      8      9      8      7
D41V3, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            3                              9
  CLUS_3                            2                              8
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(17Q11.2) MUTATED        2      2      1      2      1      0
  DEL PEAK 22(17Q11.2) WILD-TYPE      6      5      6      1      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(17Q11.2) MUTATED        3      2
  DEL PEAK 22(17Q11.2) WILD-TYPE      3      4
D41V4, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            2                              1
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            3                              3
  CLUS_8                            2                              4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED       10      3      7      3
  DEL PEAK 22(17Q11.2) WILD-TYPE     14     10     10     20
D41V5, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            3                             10
  CLUS_3                            7                             10
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(17Q11.2) MUTATED        8     10      2      3
  DEL PEAK 22(17Q11.2) WILD-TYPE     15     13      5     21
D41V6, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           10                             13
  CLUS_3                            2                              5
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17Q11.2) MUTATED       14      4      5
  DEL PEAK 22(17Q11.2) WILD-TYPE     22     12     21
D41V7, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                           14                             22
  CLUS_2                            4                             12
  CLUS_3                            5                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(17Q11.2) MUTATED        4      7      0     11      1
  DEL PEAK 22(17Q11.2) WILD-TYPE     12     20     11      9      3
D41V8, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            7                             20
  CLUS_3                            0                             11
  CLUS_4                           11                              9
  CLUS_5                            1                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17Q11.2) MUTATED        7     10      5
  DEL PEAK 22(17Q11.2) WILD-TYPE     21     12     22
D41V9, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                            7                             21
  CLUS_2                           10                             12
  CLUS_3                            5                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(17Q11.2) MUTATED       14      5      3
  DEL PEAK 22(17Q11.2) WILD-TYPE     25     19     11
D41V10, multiclass
        clus
vv       DEL PEAK 22(17Q11.2) MUTATED DEL PEAK 22(17Q11.2) WILD-TYPE
  CLUS_1                           14                             25
  CLUS_2                            5                             19
  CLUS_3                            3                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 23(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.31) MUTATED       13      3      9      1
  DEL PEAK 23(17Q21.31) WILD-TYPE     23     23      7     11
D42V1, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                            13                              23
  CLUS_2                             3                              23
  CLUS_3                             9                               7
  CLUS_4                             1                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q21.31) MUTATED        7      1     12      4      1
  DEL PEAK 23(17Q21.31) WILD-TYPE     11     10      8     14     10
D42V2, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             7                              11
  CLUS_2                             1                              10
  CLUS_3                            12                               8
  CLUS_4                             4                              14
  CLUS_5                             1                              10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.31) MUTATED        7      4      2      2
  DEL PEAK 23(17Q21.31) WILD-TYPE      7      8      8      7
D42V3, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             7                               7
  CLUS_2                             4                               8
  CLUS_3                             2                               8
  CLUS_4                             2                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q21.31) MUTATED        3      2      1      2      1      0
  DEL PEAK 23(17Q21.31) WILD-TYPE      5      5      6      1      3      4
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 23(17Q21.31) MUTATED        3      3
  DEL PEAK 23(17Q21.31) WILD-TYPE      3      3
D42V4, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                             2                               5
  CLUS_3                             1                               6
  CLUS_4                             2                               1
  CLUS_5                             1                               3
  CLUS_6                             0                               4
  CLUS_7                             3                               3
  CLUS_8                             3                               3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.31) MUTATED       11      4      7      3
  DEL PEAK 23(17Q21.31) WILD-TYPE     13      9     10     20
D42V5, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                            11                              13
  CLUS_2                             4                               9
  CLUS_3                             7                              10
  CLUS_4                             3                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q21.31) MUTATED        9     11      2      3
  DEL PEAK 23(17Q21.31) WILD-TYPE     14     12      5     21
D42V6, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             9                              14
  CLUS_2                            11                              12
  CLUS_3                             2                               5
  CLUS_4                             3                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q21.31) MUTATED       17      3      5
  DEL PEAK 23(17Q21.31) WILD-TYPE     19     13     21
D42V7, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                            17                              19
  CLUS_2                             3                              13
  CLUS_3                             5                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(17Q21.31) MUTATED        6      6      0     12      1
  DEL PEAK 23(17Q21.31) WILD-TYPE     10     21     11      8      3
D42V8, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             6                              10
  CLUS_2                             6                              21
  CLUS_3                             0                              11
  CLUS_4                            12                               8
  CLUS_5                             1                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q21.31) MUTATED       10      9      5
  DEL PEAK 23(17Q21.31) WILD-TYPE     18     13     22
D42V9, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                            10                              18
  CLUS_2                             9                              13
  CLUS_3                             5                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q21.31) MUTATED       17      5      2
  DEL PEAK 23(17Q21.31) WILD-TYPE     22     19     12
D42V10, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                            17                              22
  CLUS_2                             5                              19
  CLUS_3                             2                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 24(17Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED       10      3     10      1
  DEL PEAK 24(17Q24.2) WILD-TYPE     26     23      6     11
D43V1, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            3                             23
  CLUS_3                           10                              6
  CLUS_4                            1                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(17Q24.2) MUTATED        6      2     12      3      1
  DEL PEAK 24(17Q24.2) WILD-TYPE     12      9      8     15     10
D43V2, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            2                              9
  CLUS_3                           12                              8
  CLUS_4                            3                             15
  CLUS_5                            1                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        5      4      2      2
  DEL PEAK 24(17Q24.2) WILD-TYPE      9      8      8      7
D43V3, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            4                              8
  CLUS_3                            2                              8
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(17Q24.2) MUTATED        1      2      1      1      1      0
  DEL PEAK 24(17Q24.2) WILD-TYPE      7      5      6      2      3      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 24(17Q24.2) MUTATED        3      4
  DEL PEAK 24(17Q24.2) WILD-TYPE      3      2
D43V4, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            1                              2
  CLUS_5                            1                              3
  CLUS_6                            0                              4
  CLUS_7                            3                              3
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        9      4      7      3
  DEL PEAK 24(17Q24.2) WILD-TYPE     15      9     10     20
D43V5, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                            4                              9
  CLUS_3                            7                             10
  CLUS_4                            3                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(17Q24.2) MUTATED        8     11      1      3
  DEL PEAK 24(17Q24.2) WILD-TYPE     15     12      6     21
D43V6, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           11                             12
  CLUS_3                            1                              6
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(17Q24.2) MUTATED       15      4      5
  DEL PEAK 24(17Q24.2) WILD-TYPE     21     12     21
D43V7, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                           15                             21
  CLUS_2                            4                             12
  CLUS_3                            5                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(17Q24.2) MUTATED        6      7      0      8      3
  DEL PEAK 24(17Q24.2) WILD-TYPE     10     20     11     12      1
D43V8, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            7                             20
  CLUS_3                            0                             11
  CLUS_4                            8                             12
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(17Q24.2) MUTATED        7     11      5
  DEL PEAK 24(17Q24.2) WILD-TYPE     21     11     22
D43V9, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                            7                             21
  CLUS_2                           11                             11
  CLUS_3                            5                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(17Q24.2) MUTATED       15      6      2
  DEL PEAK 24(17Q24.2) WILD-TYPE     24     18     12
D43V10, multiclass
        clus
vv       DEL PEAK 24(17Q24.2) MUTATED DEL PEAK 24(17Q24.2) WILD-TYPE
  CLUS_1                           15                             24
  CLUS_2                            6                             18
  CLUS_3                            2                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 25(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED       16      5      7      8
  DEL PEAK 25(18Q21.2) WILD-TYPE     20     21      9      4
D44V1, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           16                             20
  CLUS_2                            5                             21
  CLUS_3                            7                              9
  CLUS_4                            8                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(18Q21.2) MUTATED        6      3     12      6      5
  DEL PEAK 25(18Q21.2) WILD-TYPE     12      8      8     12      6
D44V2, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            3                              8
  CLUS_3                           12                              8
  CLUS_4                            6                             12
  CLUS_5                            5                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED        5      5      4      3
  DEL PEAK 25(18Q21.2) WILD-TYPE      9      7      6      6
D44V3, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            5                              7
  CLUS_3                            4                              6
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(18Q21.2) MUTATED        1      1      3      2      1      2
  DEL PEAK 25(18Q21.2) WILD-TYPE      7      6      4      1      3      2
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 25(18Q21.2) MUTATED        3      4
  DEL PEAK 25(18Q21.2) WILD-TYPE      3      2
D44V4, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            1                              6
  CLUS_3                            3                              4
  CLUS_4                            2                              1
  CLUS_5                            1                              3
  CLUS_6                            2                              2
  CLUS_7                            3                              3
  CLUS_8                            4                              2
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED       10      4      7     11
  DEL PEAK 25(18Q21.2) WILD-TYPE     14      9     10     12
D44V5, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            4                              9
  CLUS_3                            7                             10
  CLUS_4                           11                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED        9     10      3     10
  DEL PEAK 25(18Q21.2) WILD-TYPE     14     13      4     14
D44V6, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           10                             13
  CLUS_3                            3                              4
  CLUS_4                           10                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       14      5     13
  DEL PEAK 25(18Q21.2) WILD-TYPE     22     11     13
D44V7, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           14                             22
  CLUS_2                            5                             11
  CLUS_3                           13                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(18Q21.2) MUTATED        5     11      5      9      2
  DEL PEAK 25(18Q21.2) WILD-TYPE     11     16      6     11      2
D44V8, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                           11                             16
  CLUS_3                            5                              6
  CLUS_4                            9                             11
  CLUS_5                            2                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED        8     10     13
  DEL PEAK 25(18Q21.2) WILD-TYPE     20     12     14
D44V9, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                            8                             20
  CLUS_2                           10                             12
  CLUS_3                           13                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       15      8      8
  DEL PEAK 25(18Q21.2) WILD-TYPE     24     16      6
D44V10, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           15                             24
  CLUS_2                            8                             16
  CLUS_3                            8                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 26(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(20P12.1) MUTATED       10      0      2      0
  DEL PEAK 26(20P12.1) WILD-TYPE     26     26     14     12
D45V1, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                           10                             26
  CLUS_2                            0                             26
  CLUS_3                            2                             14
  CLUS_4                            0                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(20P12.1) MUTATED        4      1      2      1      1
  DEL PEAK 26(20P12.1) WILD-TYPE     14     10     18     17     10
D45V2, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            1                             10
  CLUS_3                            2                             18
  CLUS_4                            1                             17
  CLUS_5                            1                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(20P12.1) MUTATED        4      1      0      0
  DEL PEAK 26(20P12.1) WILD-TYPE     10     11     10      9
D45V3, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                             11
  CLUS_3                            0                             10
  CLUS_4                            0                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(20P12.1) MUTATED        2      1      0      1      0      0
  DEL PEAK 26(20P12.1) WILD-TYPE      6      6      7      2      4      4
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(20P12.1) MUTATED        1      0
  DEL PEAK 26(20P12.1) WILD-TYPE      5      6
D45V4, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            1                              2
  CLUS_5                            0                              4
  CLUS_6                            0                              4
  CLUS_7                            1                              5
  CLUS_8                            0                              6
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(20P12.1) MUTATED        6      1      2      0
  DEL PEAK 26(20P12.1) WILD-TYPE     18     12     15     23
D45V5, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                            1                             12
  CLUS_3                            2                             15
  CLUS_4                            0                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(20P12.1) MUTATED        6      2      1      0
  DEL PEAK 26(20P12.1) WILD-TYPE     17     21      6     24
D45V6, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                            2                             21
  CLUS_3                            1                              6
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(20P12.1) MUTATED        4      5      0
  DEL PEAK 26(20P12.1) WILD-TYPE     32     11     26
D45V7, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            4                             32
  CLUS_2                            5                             11
  CLUS_3                            0                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(20P12.1) MUTATED        1      4      0      4      0
  DEL PEAK 26(20P12.1) WILD-TYPE     15     23     11     16      4
D45V8, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            4                             23
  CLUS_3                            0                             11
  CLUS_4                            4                             16
  CLUS_5                            0                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(20P12.1) MUTATED        2      7      0
  DEL PEAK 26(20P12.1) WILD-TYPE     26     15     27
D45V9, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            2                             26
  CLUS_2                            7                             15
  CLUS_3                            0                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(20P12.1) MUTATED        5      3      1
  DEL PEAK 26(20P12.1) WILD-TYPE     34     21     13
D45V10, multiclass
        clus
vv       DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            3                             21
  CLUS_3                            1                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 27(22Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q12.1) MUTATED       22      7     12      9
  DEL PEAK 27(22Q12.1) WILD-TYPE     14     19      4      3
D46V1, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           22                             14
  CLUS_2                            7                             19
  CLUS_3                           12                              4
  CLUS_4                            9                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(22Q12.1) MUTATED       12      6     14      8      3
  DEL PEAK 27(22Q12.1) WILD-TYPE      6      5      6     10      8
D46V2, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                            6                              5
  CLUS_3                           14                              6
  CLUS_4                            8                             10
  CLUS_5                            3                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q12.1) MUTATED        9      9      5      5
  DEL PEAK 27(22Q12.1) WILD-TYPE      5      3      5      4
D46V3, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            9                              3
  CLUS_3                            5                              5
  CLUS_4                            5                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(22Q12.1) MUTATED        5      5      2      3      3      3
  DEL PEAK 27(22Q12.1) WILD-TYPE      3      2      5      0      1      1
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(22Q12.1) MUTATED        2      5
  DEL PEAK 27(22Q12.1) WILD-TYPE      4      1
D46V4, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                            5                              2
  CLUS_3                            2                              5
  CLUS_4                            3                              0
  CLUS_5                            3                              1
  CLUS_6                            3                              1
  CLUS_7                            2                              4
  CLUS_8                            5                              1
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q12.1) MUTATED       15      8      8     12
  DEL PEAK 27(22Q12.1) WILD-TYPE      9      5      9     11
D46V5, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           15                              9
  CLUS_2                            8                              5
  CLUS_3                            8                              9
  CLUS_4                           12                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(22Q12.1) MUTATED       14     15      5      9
  DEL PEAK 27(22Q12.1) WILD-TYPE      9      8      2     15
D46V6, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           14                              9
  CLUS_2                           15                              8
  CLUS_3                            5                              2
  CLUS_4                            9                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q12.1) MUTATED       22      8     13
  DEL PEAK 27(22Q12.1) WILD-TYPE     14      8     13
D46V7, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           22                             14
  CLUS_2                            8                              8
  CLUS_3                           13                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(22Q12.1) MUTATED        9     13      6     12      3
  DEL PEAK 27(22Q12.1) WILD-TYPE      7     14      5      8      1
D46V8, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                           13                             14
  CLUS_3                            6                              5
  CLUS_4                           12                              8
  CLUS_5                            3                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q12.1) MUTATED       15     13     14
  DEL PEAK 27(22Q12.1) WILD-TYPE     13      9     13
D46V9, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           15                             13
  CLUS_2                           13                              9
  CLUS_3                           14                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(22Q12.1) MUTATED       22     10     10
  DEL PEAK 27(22Q12.1) WILD-TYPE     17     14      4
D46V10, multiclass
        clus
vv       DEL PEAK 27(22Q12.1) MUTATED DEL PEAK 27(22Q12.1) WILD-TYPE
  CLUS_1                           22                             17
  CLUS_2                           10                             14
  CLUS_3                           10                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
