[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTBLCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BLCA-TP/11724834/BLCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BLCA-TP/10686699/transformed.cor.cli.txt"

nPatients in clinical file=412, in cluster file=130, common to both=130
[1]  35 130
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            64             66 
  TP53 MUTATED TP53 WILD-TYPE 
            64             66 
[1] "KDM6A MUTATION ANALYSIS"
[1] 3
  KDM6A MUTATED KDM6A WILD-TYPE 
             31              99 
  KDM6A MUTATED KDM6A WILD-TYPE 
             31              99 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           17           113 
  RB1 MUTATED RB1 WILD-TYPE 
           17           113 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              32               98 
  ARID1A MUTATED ARID1A WILD-TYPE 
              32               98 
[1] "CDKN1A MUTATION ANALYSIS"
[1] 3
  CDKN1A MUTATED CDKN1A WILD-TYPE 
              18              112 
  CDKN1A MUTATED CDKN1A WILD-TYPE 
              18              112 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            36             94 
  MLL2 MUTATED MLL2 WILD-TYPE 
            36             94 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
            11            119 
  ELF3 MUTATED ELF3 WILD-TYPE 
            11            119 
[1] "FGFR3 MUTATION ANALYSIS"
[1] 3
  FGFR3 MUTATED FGFR3 WILD-TYPE 
             16             114 
  FGFR3 MUTATED FGFR3 WILD-TYPE 
             16             114 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               7              123 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               7              123 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             14             116 
  STAG2 MUTATED STAG2 WILD-TYPE 
             14             116 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              11              119 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              11              119 
[1] "ERCC2 MUTATION ANALYSIS"
[1] 3
  ERCC2 MUTATED ERCC2 WILD-TYPE 
             16             114 
  ERCC2 MUTATED ERCC2 WILD-TYPE 
             16             114 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             13             117 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             13             117 
[1] "RHOB MUTATION ANALYSIS"
[1] 3
  RHOB MUTATED RHOB WILD-TYPE 
             7            123 
  RHOB MUTATED RHOB WILD-TYPE 
             7            123 
[1] "TSC1 MUTATION ANALYSIS"
[1] 3
  TSC1 MUTATED TSC1 WILD-TYPE 
            11            119 
  TSC1 MUTATED TSC1 WILD-TYPE 
            11            119 
[1] "FOXQ1 MUTATION ANALYSIS"
[1] 3
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              7             123 
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              7             123 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              104 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              104 
[1] "RXRA MUTATION ANALYSIS"
[1] 3
  RXRA MUTATED RXRA WILD-TYPE 
            12            118 
  RXRA MUTATED RXRA WILD-TYPE 
            12            118 
[1] "CREBBP MUTATION ANALYSIS"
[1] 3
  CREBBP MUTATED CREBBP WILD-TYPE 
              17              113 
  CREBBP MUTATED CREBBP WILD-TYPE 
              17              113 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             116 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             116 
[1] "FAT1 MUTATION ANALYSIS"
[1] 3
  FAT1 MUTATED FAT1 WILD-TYPE 
            15            115 
  FAT1 MUTATED FAT1 WILD-TYPE 
            15            115 
[1] "MLL MUTATION ANALYSIS"
[1] 3
  MLL MUTATED MLL WILD-TYPE 
           18           112 
  MLL MUTATED MLL WILD-TYPE 
           18           112 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
             6            124 
  HRAS MUTATED HRAS WILD-TYPE 
             6            124 
[1] "ACRC MUTATION ANALYSIS"
[1] 3
  ACRC MUTATED ACRC WILD-TYPE 
             4            126 
  ACRC MUTATED ACRC WILD-TYPE 
             4            126 
[1] "TXNIP MUTATION ANALYSIS"
[1] 3
  TXNIP MUTATED TXNIP WILD-TYPE 
              9             121 
  TXNIP MUTATED TXNIP WILD-TYPE 
              9             121 
[1] "ECM1 MUTATION ANALYSIS"
[1] 3
  ECM1 MUTATED ECM1 WILD-TYPE 
             5            125 
  ECM1 MUTATED ECM1 WILD-TYPE 
             5            125 
[1] "KLF5 MUTATION ANALYSIS"
[1] 3
  KLF5 MUTATED KLF5 WILD-TYPE 
            10            120 
  KLF5 MUTATED KLF5 WILD-TYPE 
            10            120 
[1] "RBM26 MUTATION ANALYSIS"
[1] 3
  RBM26 MUTATED RBM26 WILD-TYPE 
              9             121 
  RBM26 MUTATED RBM26 WILD-TYPE 
              9             121 
[1] "RAD51C MUTATION ANALYSIS"
[1] 3
  RAD51C MUTATED RAD51C WILD-TYPE 
               4              126 
  RAD51C MUTATED RAD51C WILD-TYPE 
               4              126 
[1] "CEP192 MUTATION ANALYSIS"
[1] 3
  CEP192 MUTATED CEP192 WILD-TYPE 
               5              125 
  CEP192 MUTATED CEP192 WILD-TYPE 
               5              125 
[1] "ASXL2 MUTATION ANALYSIS"
[1] 3
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              9             121 
  ASXL2 MUTATED ASXL2 WILD-TYPE 
              9             121 
[1] "PSIP1 MUTATION ANALYSIS"
[1] 3
  PSIP1 MUTATED PSIP1 WILD-TYPE 
              7             123 
  PSIP1 MUTATED PSIP1 WILD-TYPE 
              7             123 
[1] "ZNF513 MUTATION ANALYSIS"
[1] 3
  ZNF513 MUTATED ZNF513 WILD-TYPE 
               7              123 
  ZNF513 MUTATED ZNF513 WILD-TYPE 
               7              123 
[1] "FOXA1 MUTATION ANALYSIS"
[1] 3
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              7             123 
  FOXA1 MUTATED FOXA1 WILD-TYPE 
              7             123 
[1] "TRIP11 MUTATION ANALYSIS"
[1] 3
  TRIP11 MUTATED TRIP11 WILD-TYPE 
               5              125 
  TRIP11 MUTATED TRIP11 WILD-TYPE 
               5              125 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 130 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 130 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       18     21     12     12
  TP53 WILD-TYPE     16     10     33      5
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           18             16
  CLUS_2           21             10
  CLUS_3           12             33
  CLUS_4           12              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       28     26     10
  TP53 WILD-TYPE     27     22     17
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           28             27
  CLUS_2           26             22
  CLUS_3           10             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       14     11     23      1      9
  TP53 WILD-TYPE     22     17     10      4      8
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           14             22
  CLUS_2           11             17
  CLUS_3           23             10
  CLUS_4            1              4
  CLUS_5            9              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       16     15     17     10
  TP53 WILD-TYPE     27     21      4      9
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             27
  CLUS_2           15             21
  CLUS_3           17              4
  CLUS_4           10              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       20     23     21
  TP53 WILD-TYPE     15     32     18
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           20             15
  CLUS_2           23             32
  CLUS_3           21             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       22     12     17     13
  TP53 WILD-TYPE     22     21     16      6
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           22             22
  CLUS_2           12             21
  CLUS_3           17             16
  CLUS_4           13              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       19     14     31
  TP53 WILD-TYPE     18     22     26
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             18
  CLUS_2           14             22
  CLUS_3           31             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       17     15     10      8     14
  TP53 WILD-TYPE     12     21     17      6     10
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           17             12
  CLUS_2           15             21
  CLUS_3           10             17
  CLUS_4            8              6
  CLUS_5           14             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       15      6     18     23
  TP53 WILD-TYPE     12     10     22     21
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15             12
  CLUS_2            6             10
  CLUS_3           18             22
  CLUS_4           23             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       16      7     16      8      0     15
  TP53 WILD-TYPE     15     11     10      9      6     14
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             15
  CLUS_2            7             11
  CLUS_3           16             10
  CLUS_4            8              9
  CLUS_5            0              6
  CLUS_6           15             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = KDM6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       14      6      8      3
  KDM6A WILD-TYPE     20     25     37     14
D2V1, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            14              20
  CLUS_2             6              25
  CLUS_3             8              37
  CLUS_4             3              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       13     11      7
  KDM6A WILD-TYPE     42     37     20
D2V2, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            13              42
  CLUS_2            11              37
  CLUS_3             7              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED        9      4     10      2      2
  KDM6A WILD-TYPE     27     24     23      3     15
D2V3, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             9              27
  CLUS_2             4              24
  CLUS_3            10              23
  CLUS_4             2               3
  CLUS_5             2              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        9      6      9      3
  KDM6A WILD-TYPE     34     30     12     16
D2V4, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             9              34
  CLUS_2             6              30
  CLUS_3             9              12
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED        6     13     12
  KDM6A WILD-TYPE     29     42     27
D2V5, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             6              29
  CLUS_2            13              42
  CLUS_3            12              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED       11      8      9      3
  KDM6A WILD-TYPE     33     25     24     16
D2V6, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            11              33
  CLUS_2             8              25
  CLUS_3             9              24
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM6A MUTATED       10      5     16
  KDM6A WILD-TYPE     27     31     41
D2V7, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            10              27
  CLUS_2             5              31
  CLUS_3            16              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM6A MUTATED       11      5      5      4      6
  KDM6A WILD-TYPE     18     31     22     10     18
D2V8, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1            11              18
  CLUS_2             5              31
  CLUS_3             5              22
  CLUS_4             4              10
  CLUS_5             6              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM6A MUTATED        7      3     10     10
  KDM6A WILD-TYPE     20     13     30     34
D2V9, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             7              20
  CLUS_2             3              13
  CLUS_3            10              30
  CLUS_4            10              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM6A MUTATED        7      3      8      3      2      7
  KDM6A WILD-TYPE     24     15     18     14      4     22
D2V10, multiclass
        clus
vv       KDM6A MUTATED KDM6A WILD-TYPE
  CLUS_1             7              24
  CLUS_2             3              15
  CLUS_3             8              18
  CLUS_4             3              14
  CLUS_5             2               4
  CLUS_6             7              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        1      5      2      9
  RB1 WILD-TYPE     33     26     43      8
D3V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            33
  CLUS_2           5            26
  CLUS_3           2            43
  CLUS_4           9             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       10      5      2
  RB1 WILD-TYPE     45     43     25
D3V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          10            45
  CLUS_2           5            43
  CLUS_3           2            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        3      6      5      0      2
  RB1 WILD-TYPE     33     22     28      5     15
D3V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            33
  CLUS_2           6            22
  CLUS_3           5            28
  CLUS_4           0             5
  CLUS_5           2            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      7      4      2
  RB1 WILD-TYPE     40     29     17     17
D3V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            40
  CLUS_2           7            29
  CLUS_3           4            17
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        4      6      7
  RB1 WILD-TYPE     31     49     32
D3V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            31
  CLUS_2           6            49
  CLUS_3           7            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        5      3      7      2
  RB1 WILD-TYPE     39     30     26     17
D3V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5            39
  CLUS_2           3            30
  CLUS_3           7            26
  CLUS_4           2            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        4      3     10
  RB1 WILD-TYPE     33     33     47
D3V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            33
  CLUS_2           3            33
  CLUS_3          10            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1 MUTATED        5      4      2      3      3
  RB1 WILD-TYPE     24     32     25     11     21
D3V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5            24
  CLUS_2           4            32
  CLUS_3           2            25
  CLUS_4           3            11
  CLUS_5           3            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        7      1      3      6
  RB1 WILD-TYPE     20     15     37     38
D3V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           7            20
  CLUS_2           1            15
  CLUS_3           3            37
  CLUS_4           6            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1 MUTATED        4      1      3      1      0      8
  RB1 WILD-TYPE     27     17     23     16      6     21
D3V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           4            27
  CLUS_2           1            17
  CLUS_3           3            23
  CLUS_4           1            16
  CLUS_5           0             6
  CLUS_6           8            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        7     10      9      6
  ARID1A WILD-TYPE     27     21     36     11
D4V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              7               27
  CLUS_2             10               21
  CLUS_3              9               36
  CLUS_4              6               11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       13     14      5
  ARID1A WILD-TYPE     42     34     22
D4V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             13               42
  CLUS_2             14               34
  CLUS_3              5               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       11      8      6      2      3
  ARID1A WILD-TYPE     25     20     27      3     14
D4V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               25
  CLUS_2              8               20
  CLUS_3              6               27
  CLUS_4              2                3
  CLUS_5              3               14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       11     14      3      2
  ARID1A WILD-TYPE     32     22     18     17
D4V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               32
  CLUS_2             14               22
  CLUS_3              3               18
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       11     14      7
  ARID1A WILD-TYPE     24     41     32
D4V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               24
  CLUS_2             14               41
  CLUS_3              7               32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       12      6      6      8
  ARID1A WILD-TYPE     32     27     27     11
D4V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             12               32
  CLUS_2              6               27
  CLUS_3              6               27
  CLUS_4              8               11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       11     11     10
  ARID1A WILD-TYPE     26     25     47
D4V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               26
  CLUS_2             11               25
  CLUS_3             10               47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        6     11      2      2     11
  ARID1A WILD-TYPE     23     25     25     12     13
D4V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6               23
  CLUS_2             11               25
  CLUS_3              2               25
  CLUS_4              2               12
  CLUS_5             11               13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED        4      5      6     16
  ARID1A WILD-TYPE     23     11     34     28
D4V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               23
  CLUS_2              5               11
  CLUS_3              6               34
  CLUS_4             16               28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED       11      6      5      3      0      6
  ARID1A WILD-TYPE     20     12     21     14      6     23
D4V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               20
  CLUS_2              6               12
  CLUS_3              5               21
  CLUS_4              3               14
  CLUS_5              0                6
  CLUS_6              6               23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = CDKN1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED        2      5      7      4
  CDKN1A WILD-TYPE     32     26     38     13
D5V1, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              2               32
  CLUS_2              5               26
  CLUS_3              7               38
  CLUS_4              4               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1A MUTATED        8      7      3
  CDKN1A WILD-TYPE     47     41     24
D5V2, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              8               47
  CLUS_2              7               41
  CLUS_3              3               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1A MUTATED        6      4      5      1      1
  CDKN1A WILD-TYPE     30     24     28      4     16
D5V3, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              6               30
  CLUS_2              4               24
  CLUS_3              5               28
  CLUS_4              1                4
  CLUS_5              1               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED        7      4      4      2
  CDKN1A WILD-TYPE     36     32     17     17
D5V4, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              7               36
  CLUS_2              4               32
  CLUS_3              4               17
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1A MUTATED        6      6      6
  CDKN1A WILD-TYPE     29     49     33
D5V5, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              6               29
  CLUS_2              6               49
  CLUS_3              6               33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED        4      6      5      3
  CDKN1A WILD-TYPE     40     27     28     16
D5V6, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              4               40
  CLUS_2              6               27
  CLUS_3              5               28
  CLUS_4              3               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN1A MUTATED        4      6      8
  CDKN1A WILD-TYPE     33     30     49
D5V7, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              4               33
  CLUS_2              6               30
  CLUS_3              8               49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN1A MUTATED        3      6      4      3      2
  CDKN1A WILD-TYPE     26     30     23     11     22
D5V8, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              3               26
  CLUS_2              6               30
  CLUS_3              4               23
  CLUS_4              3               11
  CLUS_5              2               22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN1A MUTATED        3      1      7      6
  CDKN1A WILD-TYPE     24     15     33     38
D5V9, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              3               24
  CLUS_2              1               15
  CLUS_3              7               33
  CLUS_4              6               38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN1A MUTATED        2      1      5      3      1      5
  CDKN1A WILD-TYPE     29     17     21     14      5     24
D5V10, multiclass
        clus
vv       CDKN1A MUTATED CDKN1A WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               17
  CLUS_3              5               21
  CLUS_4              3               14
  CLUS_5              1                5
  CLUS_6              5               24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED        8     10     13      3
  MLL2 WILD-TYPE     26     21     32     14
D6V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            8             26
  CLUS_2           10             21
  CLUS_3           13             32
  CLUS_4            3             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       18     11      7
  MLL2 WILD-TYPE     37     37     20
D6V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           18             37
  CLUS_2           11             37
  CLUS_3            7             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        9      5     12      1      7
  MLL2 WILD-TYPE     27     23     21      4     10
D6V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            9             27
  CLUS_2            5             23
  CLUS_3           12             21
  CLUS_4            1              4
  CLUS_5            7             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       12      7      7      8
  MLL2 WILD-TYPE     31     29     14     11
D6V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           12             31
  CLUS_2            7             29
  CLUS_3            7             14
  CLUS_4            8             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        8     12     15
  MLL2 WILD-TYPE     27     43     24
D6V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            8             27
  CLUS_2           12             43
  CLUS_3           15             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       12      7     13      3
  MLL2 WILD-TYPE     32     26     20     16
D6V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           12             32
  CLUS_2            7             26
  CLUS_3           13             20
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED        7     10     19
  MLL2 WILD-TYPE     30     26     38
D6V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            7             30
  CLUS_2           10             26
  CLUS_3           19             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        8      9      6      7      6
  MLL2 WILD-TYPE     21     27     21      7     18
D6V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            8             21
  CLUS_2            9             27
  CLUS_3            6             21
  CLUS_4            7              7
  CLUS_5            6             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       10      2     11     11
  MLL2 WILD-TYPE     17     14     29     33
D6V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           10             17
  CLUS_2            2             14
  CLUS_3           11             29
  CLUS_4           11             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED       10      3      7      5      0      9
  MLL2 WILD-TYPE     21     15     19     12      6     20
D6V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           10             21
  CLUS_2            3             15
  CLUS_3            7             19
  CLUS_4            5             12
  CLUS_5            0              6
  CLUS_6            9             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = ELF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        2      5      3      1
  ELF3 WILD-TYPE     32     26     42     16
D7V1, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            5             26
  CLUS_3            3             42
  CLUS_4            1             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        3      4      4
  ELF3 WILD-TYPE     52     44     23
D7V2, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3             52
  CLUS_2            4             44
  CLUS_3            4             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        4      3      3      0      0
  ELF3 WILD-TYPE     32     25     30      5     17
D7V3, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            4             32
  CLUS_2            3             25
  CLUS_3            3             30
  CLUS_4            0              5
  CLUS_5            0             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        3      4      3      0
  ELF3 WILD-TYPE     40     32     18     19
D7V4, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3             40
  CLUS_2            4             32
  CLUS_3            3             18
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        3      6      2
  ELF3 WILD-TYPE     32     49     37
D7V5, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            3             32
  CLUS_2            6             49
  CLUS_3            2             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        7      2      2      0
  ELF3 WILD-TYPE     37     31     31     19
D7V6, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            7             37
  CLUS_2            2             31
  CLUS_3            2             31
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        5      3      3
  ELF3 WILD-TYPE     32     33     54
D7V7, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            5             32
  CLUS_2            3             33
  CLUS_3            3             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        4      4      1      0      2
  ELF3 WILD-TYPE     25     32     26     14     22
D7V8, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            4             25
  CLUS_2            4             32
  CLUS_3            1             26
  CLUS_4            0             14
  CLUS_5            2             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        1      2      3      5
  ELF3 WILD-TYPE     26     14     37     39
D7V9, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            2             14
  CLUS_3            3             37
  CLUS_4            5             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELF3 MUTATED        4      2      2      2      0      1
  ELF3 WILD-TYPE     27     16     24     15      6     28
D7V10, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            4             27
  CLUS_2            2             16
  CLUS_3            2             24
  CLUS_4            2             15
  CLUS_5            0              6
  CLUS_6            1             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = FGFR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        5      2      9      0
  FGFR3 WILD-TYPE     29     29     36     17
D8V1, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             2              29
  CLUS_3             9              36
  CLUS_4             0              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        4      7      5
  FGFR3 WILD-TYPE     51     41     22
D8V2, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             7              41
  CLUS_3             5              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGFR3 MUTATED        9      2      4      0      0
  FGFR3 WILD-TYPE     27     26     29      5     17
D8V3, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             9              27
  CLUS_2             2              26
  CLUS_3             4              29
  CLUS_4             0               5
  CLUS_5             0              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        9      0      4      2
  FGFR3 WILD-TYPE     34     36     17     17
D8V4, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             9              34
  CLUS_2             0              36
  CLUS_3             4              17
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        2     10      4
  FGFR3 WILD-TYPE     33     45     35
D8V5, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             2              33
  CLUS_2            10              45
  CLUS_3             4              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        3     10      2      1
  FGFR3 WILD-TYPE     41     23     31     18
D8V6, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             3              41
  CLUS_2            10              23
  CLUS_3             2              31
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGFR3 MUTATED        2      3     11
  FGFR3 WILD-TYPE     35     33     46
D8V7, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             3              33
  CLUS_3            11              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGFR3 MUTATED        4      3      7      2      0
  FGFR3 WILD-TYPE     25     33     20     12     24
D8V8, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             3              33
  CLUS_3             7              20
  CLUS_4             2              12
  CLUS_5             0              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGFR3 MUTATED        0      0     11      4
  FGFR3 WILD-TYPE     27     16     29     40
D8V9, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             0              16
  CLUS_3            11              29
  CLUS_4             4              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGFR3 MUTATED        1      0      7      3      4      0
  FGFR3 WILD-TYPE     30     18     19     14      2     29
D8V10, multiclass
        clus
vv       FGFR3 MUTATED FGFR3 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             0              18
  CLUS_3             7              19
  CLUS_4             3              14
  CLUS_5             4               2
  CLUS_6             0              29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        4      2      1      0
  CDKN2A WILD-TYPE     30     29     44     17
D9V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               30
  CLUS_2              2               29
  CLUS_3              1               44
  CLUS_4              0               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        3      3      1
  CDKN2A WILD-TYPE     52     45     26
D9V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               52
  CLUS_2              3               45
  CLUS_3              1               26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        2      0      4      0      1
  CDKN2A WILD-TYPE     34     28     29      5     16
D9V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               34
  CLUS_2              0               28
  CLUS_3              4               29
  CLUS_4              0                5
  CLUS_5              1               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        3      0      2      2
  CDKN2A WILD-TYPE     40     36     19     17
D9V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               40
  CLUS_2              0               36
  CLUS_3              2               19
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        2      3      2
  CDKN2A WILD-TYPE     33     52     37
D9V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               33
  CLUS_2              3               52
  CLUS_3              2               37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        2      2      2      1
  CDKN2A WILD-TYPE     42     31     31     18
D9V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               42
  CLUS_2              2               31
  CLUS_3              2               31
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        1      1      5
  CDKN2A WILD-TYPE     36     35     52
D9V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               36
  CLUS_2              1               35
  CLUS_3              5               52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        3      1      1      2      0
  CDKN2A WILD-TYPE     26     35     26     12     24
D9V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               26
  CLUS_2              1               35
  CLUS_3              1               26
  CLUS_4              2               12
  CLUS_5              0               24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        2      0      2      3
  CDKN2A WILD-TYPE     25     16     38     41
D9V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               25
  CLUS_2              0               16
  CLUS_3              2               38
  CLUS_4              3               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        1      0      1      2      1      2
  CDKN2A WILD-TYPE     30     18     25     15      5     27
D9V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               30
  CLUS_2              0               18
  CLUS_3              1               25
  CLUS_4              2               15
  CLUS_5              1                5
  CLUS_6              2               27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = STAG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        5      2      6      1
  STAG2 WILD-TYPE     29     29     39     16
D10V1, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             2              29
  CLUS_3             6              39
  CLUS_4             1              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        4      5      5
  STAG2 WILD-TYPE     51     43     22
D10V2, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             5              43
  CLUS_3             5              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        7      3      3      0      0
  STAG2 WILD-TYPE     29     25     30      5     17
D10V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             7              29
  CLUS_2             3              25
  CLUS_3             3              30
  CLUS_4             0               5
  CLUS_5             0              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        7      3      1      2
  STAG2 WILD-TYPE     36     33     20     17
D10V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             7              36
  CLUS_2             3              33
  CLUS_3             1              20
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        4      8      2
  STAG2 WILD-TYPE     31     47     37
D10V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             8              47
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        5      7      2      0
  STAG2 WILD-TYPE     39     26     31     19
D10V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             5              39
  CLUS_2             7              26
  CLUS_3             2              31
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        3      2      9
  STAG2 WILD-TYPE     34     34     48
D10V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              34
  CLUS_3             9              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAG2 MUTATED        2      3      6      1      2
  STAG2 WILD-TYPE     27     33     21     13     22
D10V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             3              33
  CLUS_3             6              21
  CLUS_4             1              13
  CLUS_5             2              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        2      1      7      3
  STAG2 WILD-TYPE     25     15     33     41
D10V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              15
  CLUS_3             7              33
  CLUS_4             3              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAG2 MUTATED        2      1      5      1      2      2
  STAG2 WILD-TYPE     29     17     21     16      4     27
D10V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             1              17
  CLUS_3             5              21
  CLUS_4             1              16
  CLUS_5             2               4
  CLUS_6             2              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = NFE2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        3      0      8      0
  NFE2L2 WILD-TYPE     31     31     37     17
D11V1, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              0               31
  CLUS_3              8               37
  CLUS_4              0               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        7      4      0
  NFE2L2 WILD-TYPE     48     44     27
D11V2, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              7               48
  CLUS_2              4               44
  CLUS_3              0               27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        1      4      3      1      2
  NFE2L2 WILD-TYPE     35     24     30      4     15
D11V3, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              1               35
  CLUS_2              4               24
  CLUS_3              3               30
  CLUS_4              1                4
  CLUS_5              2               15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        3      4      3      1
  NFE2L2 WILD-TYPE     40     32     18     18
D11V4, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              4               32
  CLUS_3              3               18
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        4      1      5
  NFE2L2 WILD-TYPE     31     54     34
D11V5, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               31
  CLUS_2              1               54
  CLUS_3              5               34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        4      0      5      1
  NFE2L2 WILD-TYPE     40     33     28     18
D11V6, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               40
  CLUS_2              0               33
  CLUS_3              5               28
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L2 MUTATED        3      4      4
  NFE2L2 WILD-TYPE     34     32     53
D11V7, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              4               32
  CLUS_3              4               53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L2 MUTATED        4      4      1      2      0
  NFE2L2 WILD-TYPE     25     32     26     12     24
D11V8, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              4               25
  CLUS_2              4               32
  CLUS_3              1               26
  CLUS_4              2               12
  CLUS_5              0               24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L2 MUTATED        2      1      3      4
  NFE2L2 WILD-TYPE     25     15     37     40
D11V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              1               15
  CLUS_3              3               37
  CLUS_4              4               40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L2 MUTATED        2      1      1      4      0      2
  NFE2L2 WILD-TYPE     29     17     25     13      6     27
D11V10, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CLUS_1              2               29
  CLUS_2              1               17
  CLUS_3              1               25
  CLUS_4              4               13
  CLUS_5              0                6
  CLUS_6              2               27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = ERCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        5      3      5      3
  ERCC2 WILD-TYPE     29     28     40     14
D12V1, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             3              28
  CLUS_3             5              40
  CLUS_4             3              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        8      6      2
  ERCC2 WILD-TYPE     47     42     25
D12V2, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             8              47
  CLUS_2             6              42
  CLUS_3             2              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        3      0      6      1      1
  ERCC2 WILD-TYPE     33     28     27      4     16
D12V3, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              33
  CLUS_2             0              28
  CLUS_3             6              27
  CLUS_4             1               4
  CLUS_5             1              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        3      1      6      1
  ERCC2 WILD-TYPE     40     35     15     18
D12V4, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              35
  CLUS_3             6              15
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        4      4      8
  ERCC2 WILD-TYPE     31     51     31
D12V5, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             4              51
  CLUS_3             8              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        3      2      8      3
  ERCC2 WILD-TYPE     41     31     25     16
D12V6, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             2              31
  CLUS_3             8              25
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        2      6      8
  ERCC2 WILD-TYPE     35     30     49
D12V7, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             6              30
  CLUS_3             8              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        5      7      2      1      1
  ERCC2 WILD-TYPE     24     29     25     13     23
D12V8, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             5              24
  CLUS_2             7              29
  CLUS_3             2              25
  CLUS_4             1              13
  CLUS_5             1              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        7      3      4      2
  ERCC2 WILD-TYPE     20     13     36     42
D12V9, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             7              20
  CLUS_2             3              13
  CLUS_3             4              36
  CLUS_4             2              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERCC2 MUTATED        1      3      2      0      0     10
  ERCC2 WILD-TYPE     30     15     24     17      6     19
D12V10, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             3              15
  CLUS_3             2              24
  CLUS_4             0              17
  CLUS_5             0               6
  CLUS_6            10              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        2      3      6      1
  FBXW7 WILD-TYPE     32     28     39     16
D13V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             3              28
  CLUS_3             6              39
  CLUS_4             1              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       11      1      1
  FBXW7 WILD-TYPE     44     47     26
D13V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            11              44
  CLUS_2             1              47
  CLUS_3             1              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1      3      5      1      1
  FBXW7 WILD-TYPE     35     25     28      4     16
D13V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             3              25
  CLUS_3             5              28
  CLUS_4             1               4
  CLUS_5             1              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        2      4      3      2
  FBXW7 WILD-TYPE     41     32     18     17
D13V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              41
  CLUS_2             4              32
  CLUS_3             3              18
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        5      2      6
  FBXW7 WILD-TYPE     30     53     33
D13V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              30
  CLUS_2             2              53
  CLUS_3             6              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        4      0      6      3
  FBXW7 WILD-TYPE     40     33     27     16
D13V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             0              33
  CLUS_3             6              27
  CLUS_4             3              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED        2      6      5
  FBXW7 WILD-TYPE     35     30     52
D13V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             6              30
  CLUS_3             5              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        6      6      0      1      0
  FBXW7 WILD-TYPE     23     30     27     13     24
D13V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             6              23
  CLUS_2             6              30
  CLUS_3             0              27
  CLUS_4             1              13
  CLUS_5             0              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        7      4      1      1
  FBXW7 WILD-TYPE     20     12     39     43
D13V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             7              20
  CLUS_2             4              12
  CLUS_3             1              39
  CLUS_4             1              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        0      5      1      0      0      7
  FBXW7 WILD-TYPE     31     13     25     17      6     22
D13V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             0              31
  CLUS_2             5              13
  CLUS_3             1              25
  CLUS_4             0              17
  CLUS_5             0               6
  CLUS_6             7              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = RHOB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        1      4      0      2
  RHOB WILD-TYPE     33     27     45     15
D14V1, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            1             33
  CLUS_2            4             27
  CLUS_3            0             45
  CLUS_4            2             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOB MUTATED        3      3      1
  RHOB WILD-TYPE     52     45     26
D14V2, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            3             52
  CLUS_2            3             45
  CLUS_3            1             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOB MUTATED        2      1      4      0      0
  RHOB WILD-TYPE     34     27     29      5     17
D14V3, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             34
  CLUS_2            1             27
  CLUS_3            4             29
  CLUS_4            0              5
  CLUS_5            0             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        2      2      3      0
  RHOB WILD-TYPE     41     34     18     19
D14V4, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             41
  CLUS_2            2             34
  CLUS_3            3             18
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOB MUTATED        1      3      3
  RHOB WILD-TYPE     34     52     36
D14V5, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            1             34
  CLUS_2            3             52
  CLUS_3            3             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        4      1      2      0
  RHOB WILD-TYPE     40     32     31     19
D14V6, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            4             40
  CLUS_2            1             32
  CLUS_3            2             31
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOB MUTATED        2      1      4
  RHOB WILD-TYPE     35     35     53
D14V7, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             35
  CLUS_2            1             35
  CLUS_3            4             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOB MUTATED        2      1      0      2      2
  RHOB WILD-TYPE     27     35     27     12     22
D14V8, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             27
  CLUS_2            1             35
  CLUS_3            0             27
  CLUS_4            2             12
  CLUS_5            2             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOB MUTATED        1      0      3      3
  RHOB WILD-TYPE     26     16     37     41
D14V9, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            1             26
  CLUS_2            0             16
  CLUS_3            3             37
  CLUS_4            3             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOB MUTATED        2      0      2      2      0      1
  RHOB WILD-TYPE     29     18     24     15      6     28
D14V10, multiclass
        clus
vv       RHOB MUTATED RHOB WILD-TYPE
  CLUS_1            2             29
  CLUS_2            0             18
  CLUS_3            2             24
  CLUS_4            2             15
  CLUS_5            0              6
  CLUS_6            1             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = TSC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        5      2      4      0
  TSC1 WILD-TYPE     29     29     41     17
D15V1, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            5             29
  CLUS_2            2             29
  CLUS_3            4             41
  CLUS_4            0             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        3      6      2
  TSC1 WILD-TYPE     52     42     25
D15V2, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            3             52
  CLUS_2            6             42
  CLUS_3            2             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC1 MUTATED        6      1      2      0      2
  TSC1 WILD-TYPE     30     27     31      5     15
D15V3, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            6             30
  CLUS_2            1             27
  CLUS_3            2             31
  CLUS_4            0              5
  CLUS_5            2             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        6      2      1      2
  TSC1 WILD-TYPE     37     34     20     17
D15V4, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            6             37
  CLUS_2            2             34
  CLUS_3            1             20
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        4      6      1
  TSC1 WILD-TYPE     31     49     38
D15V5, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            4             31
  CLUS_2            6             49
  CLUS_3            1             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        5      4      1      1
  TSC1 WILD-TYPE     39     29     32     18
D15V6, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            5             39
  CLUS_2            4             29
  CLUS_3            1             32
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TSC1 MUTATED        3      4      4
  TSC1 WILD-TYPE     34     32     53
D15V7, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            4             32
  CLUS_3            4             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC1 MUTATED        2      4      1      1      3
  TSC1 WILD-TYPE     27     32     26     13     21
D15V8, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            2             27
  CLUS_2            4             32
  CLUS_3            1             26
  CLUS_4            1             13
  CLUS_5            3             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC1 MUTATED        1      1      3      6
  TSC1 WILD-TYPE     26     15     37     38
D15V9, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             15
  CLUS_3            3             37
  CLUS_4            6             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSC1 MUTATED        3      1      2      3      0      2
  TSC1 WILD-TYPE     28     17     24     14      6     27
D15V10, multiclass
        clus
vv       TSC1 MUTATED TSC1 WILD-TYPE
  CLUS_1            3             28
  CLUS_2            1             17
  CLUS_3            2             24
  CLUS_4            3             14
  CLUS_5            0              6
  CLUS_6            2             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = FOXQ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        0      4      2      1
  FOXQ1 WILD-TYPE     34     27     43     16
D16V1, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             4              27
  CLUS_3             2              43
  CLUS_4             1              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        4      1      2
  FOXQ1 WILD-TYPE     51     47     25
D16V2, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             4              51
  CLUS_2             1              47
  CLUS_3             2              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        2      0      2      0      2
  FOXQ1 WILD-TYPE     34     28     31      5     15
D16V3, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              34
  CLUS_2             0              28
  CLUS_3             2              31
  CLUS_4             0               5
  CLUS_5             2              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        3      1      0      2
  FOXQ1 WILD-TYPE     40     35     21     17
D16V4, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             1              35
  CLUS_3             0              21
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        1      4      2
  FOXQ1 WILD-TYPE     34     51     37
D16V5, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             4              51
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        2      2      2      1
  FOXQ1 WILD-TYPE     42     31     31     18
D16V6, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              42
  CLUS_2             2              31
  CLUS_3             2              31
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        2      0      5
  FOXQ1 WILD-TYPE     35     36     52
D16V7, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             0              36
  CLUS_3             5              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        2      0      2      1      2
  FOXQ1 WILD-TYPE     27     36     25     13     22
D16V8, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              36
  CLUS_3             2              25
  CLUS_4             1              13
  CLUS_5             2              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        2      0      2      3
  FOXQ1 WILD-TYPE     25     16     38     41
D16V9, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             0              16
  CLUS_3             2              38
  CLUS_4             3              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXQ1 MUTATED        3      0      1      1      0      2
  FOXQ1 WILD-TYPE     28     18     25     16      6     27
D16V10, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             0              18
  CLUS_3             1              25
  CLUS_4             1              16
  CLUS_5             0               6
  CLUS_6             2              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        9      4      7      6
  PIK3CA WILD-TYPE     25     27     38     11
D17V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               25
  CLUS_2              4               27
  CLUS_3              7               38
  CLUS_4              6               11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       14      7      5
  PIK3CA WILD-TYPE     41     41     22
D17V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             14               41
  CLUS_2              7               41
  CLUS_3              5               22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        5      6     11      0      2
  PIK3CA WILD-TYPE     31     22     22      5     15
D17V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               31
  CLUS_2              6               22
  CLUS_3             11               22
  CLUS_4              0                5
  CLUS_5              2               15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        8      9      5      2
  PIK3CA WILD-TYPE     35     27     16     17
D17V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               35
  CLUS_2              9               27
  CLUS_3              5               16
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        8      9      9
  PIK3CA WILD-TYPE     27     46     30
D17V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               27
  CLUS_2              9               46
  CLUS_3              9               30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       11      4      9      2
  PIK3CA WILD-TYPE     33     29     24     17
D17V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             11               33
  CLUS_2              4               29
  CLUS_3              9               24
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        7      6     13
  PIK3CA WILD-TYPE     30     30     44
D17V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               30
  CLUS_2              6               30
  CLUS_3             13               44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        9      7      3      2      5
  PIK3CA WILD-TYPE     20     29     24     12     19
D17V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               20
  CLUS_2              7               29
  CLUS_3              3               24
  CLUS_4              2               12
  CLUS_5              5               19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        8      2      5     11
  PIK3CA WILD-TYPE     19     14     35     33
D17V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               19
  CLUS_2              2               14
  CLUS_3              5               35
  CLUS_4             11               33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        6      2      4      4      1      9
  PIK3CA WILD-TYPE     25     16     22     13      5     20
D17V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               25
  CLUS_2              2               16
  CLUS_3              4               22
  CLUS_4              4               13
  CLUS_5              1                5
  CLUS_6              9               20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = RXRA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        5      5      2      0
  RXRA WILD-TYPE     29     26     43     17
D18V1, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5             29
  CLUS_2            5             26
  CLUS_3            2             43
  CLUS_4            0             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        5      7      0
  RXRA WILD-TYPE     50     41     27
D18V2, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5             50
  CLUS_2            7             41
  CLUS_3            0             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RXRA MUTATED        7      1      2      1      1
  RXRA WILD-TYPE     29     27     31      4     16
D18V3, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            7             29
  CLUS_2            1             27
  CLUS_3            2             31
  CLUS_4            1              4
  CLUS_5            1             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        5      4      1      2
  RXRA WILD-TYPE     38     32     20     17
D18V4, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5             38
  CLUS_2            4             32
  CLUS_3            1             20
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        4      6      2
  RXRA WILD-TYPE     31     49     37
D18V5, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            4             31
  CLUS_2            6             49
  CLUS_3            2             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        5      4      2      1
  RXRA WILD-TYPE     39     29     31     18
D18V6, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            5             39
  CLUS_2            4             29
  CLUS_3            2             31
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RXRA MUTATED        3      5      4
  RXRA WILD-TYPE     34     31     53
D18V7, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            3             34
  CLUS_2            5             31
  CLUS_3            4             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RXRA MUTATED        2      5      0      2      3
  RXRA WILD-TYPE     27     31     27     12     21
D18V8, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            2             27
  CLUS_2            5             31
  CLUS_3            0             27
  CLUS_4            2             12
  CLUS_5            3             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RXRA MUTATED        2      2      4      4
  RXRA WILD-TYPE     25     14     36     40
D18V9, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            2             25
  CLUS_2            2             14
  CLUS_3            4             36
  CLUS_4            4             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RXRA MUTATED        2      2      4      1      0      3
  RXRA WILD-TYPE     29     16     22     16      6     26
D18V10, multiclass
        clus
vv       RXRA MUTATED RXRA WILD-TYPE
  CLUS_1            2             29
  CLUS_2            2             16
  CLUS_3            4             22
  CLUS_4            1             16
  CLUS_5            0              6
  CLUS_6            3             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = CREBBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        2      1      8      5
  CREBBP WILD-TYPE     32     30     37     12
D19V1, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              2               32
  CLUS_2              1               30
  CLUS_3              8               37
  CLUS_4              5               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        9      5      3
  CREBBP WILD-TYPE     46     43     24
D19V2, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              9               46
  CLUS_2              5               43
  CLUS_3              3               24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        4      4      5      0      1
  CREBBP WILD-TYPE     32     24     28      5     16
D19V3, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              4               32
  CLUS_2              4               24
  CLUS_3              5               28
  CLUS_4              0                5
  CLUS_5              1               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6      3      4      1
  CREBBP WILD-TYPE     37     33     17     18
D19V4, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               37
  CLUS_2              3               33
  CLUS_3              4               17
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        7      4      6
  CREBBP WILD-TYPE     28     51     33
D19V5, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7               28
  CLUS_2              4               51
  CLUS_3              6               33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        8      2      5      2
  CREBBP WILD-TYPE     36     31     28     17
D19V6, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              8               36
  CLUS_2              2               31
  CLUS_3              5               28
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED        6      3      8
  CREBBP WILD-TYPE     31     33     49
D19V7, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               31
  CLUS_2              3               33
  CLUS_3              8               49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        5      3      2      3      4
  CREBBP WILD-TYPE     24     33     25     11     20
D19V8, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               24
  CLUS_2              3               33
  CLUS_3              2               25
  CLUS_4              3               11
  CLUS_5              4               20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6      1      3      7
  CREBBP WILD-TYPE     21     15     37     37
D19V9, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               21
  CLUS_2              1               15
  CLUS_3              3               37
  CLUS_4              7               37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CREBBP MUTATED        6      2      2      2      0      5
  CREBBP WILD-TYPE     25     16     24     15      6     24
D19V10, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6               25
  CLUS_2              2               16
  CLUS_3              2               24
  CLUS_4              2               15
  CLUS_5              0                6
  CLUS_6              5               24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = ERBB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        4      5      3      2
  ERBB3 WILD-TYPE     30     26     42     15
D20V1, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             5              26
  CLUS_3             3              42
  CLUS_4             2              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        5      7      2
  ERBB3 WILD-TYPE     50     41     25
D20V2, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             5              50
  CLUS_2             7              41
  CLUS_3             2              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        6      3      3      1      1
  ERBB3 WILD-TYPE     30     25     30      4     16
D20V3, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              30
  CLUS_2             3              25
  CLUS_3             3              30
  CLUS_4             1               4
  CLUS_5             1              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        6      6      1      1
  ERBB3 WILD-TYPE     37     30     20     18
D20V4, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6              37
  CLUS_2             6              30
  CLUS_3             1              20
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        4      7      3
  ERBB3 WILD-TYPE     31     48     36
D20V5, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             7              48
  CLUS_3             3              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        4      5      3      2
  ERBB3 WILD-TYPE     40     28     30     17
D20V6, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             4              40
  CLUS_2             5              28
  CLUS_3             3              30
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED        3      3      8
  ERBB3 WILD-TYPE     34     33     49
D20V7, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              33
  CLUS_3             8              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        4      3      4      0      3
  ERBB3 WILD-TYPE     25     33     23     14     21
D20V8, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             4              25
  CLUS_2             3              33
  CLUS_3             4              23
  CLUS_4             0              14
  CLUS_5             3              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        2      1      5      6
  ERBB3 WILD-TYPE     25     15     35     38
D20V9, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              15
  CLUS_3             5              35
  CLUS_4             6              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB3 MUTATED        3      1      2      1      2      5
  ERBB3 WILD-TYPE     28     17     24     16      4     24
D20V10, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             3              28
  CLUS_2             1              17
  CLUS_3             2              24
  CLUS_4             1              16
  CLUS_5             2               4
  CLUS_6             5              24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = FAT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        3      1     11      0
  FAT1 WILD-TYPE     31     30     34     17
D21V1, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            1             30
  CLUS_3           11             34
  CLUS_4            0             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        8      4      3
  FAT1 WILD-TYPE     47     44     24
D21V2, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            8             47
  CLUS_2            4             44
  CLUS_3            3             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        3      2      6      2      2
  FAT1 WILD-TYPE     33     26     27      3     15
D21V3, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            3             33
  CLUS_2            2             26
  CLUS_3            6             27
  CLUS_4            2              3
  CLUS_5            2             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        4      4      5      2
  FAT1 WILD-TYPE     39     32     16     17
D21V4, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             39
  CLUS_2            4             32
  CLUS_3            5             16
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        6      4      4
  FAT1 WILD-TYPE     29     51     35
D21V5, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            6             29
  CLUS_2            4             51
  CLUS_3            4             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        4      4      4      2
  FAT1 WILD-TYPE     40     29     29     17
D21V6, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             40
  CLUS_2            4             29
  CLUS_3            4             29
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAT1 MUTATED        6      3      6
  FAT1 WILD-TYPE     31     33     51
D21V7, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            6             31
  CLUS_2            3             33
  CLUS_3            6             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAT1 MUTATED        5      3      3      1      3
  FAT1 WILD-TYPE     24     33     24     13     21
D21V8, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            5             24
  CLUS_2            3             33
  CLUS_3            3             24
  CLUS_4            1             13
  CLUS_5            3             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAT1 MUTATED        5      0      4      6
  FAT1 WILD-TYPE     22     16     36     38
D21V9, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            5             22
  CLUS_2            0             16
  CLUS_3            4             36
  CLUS_4            6             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAT1 MUTATED        4      0      1      3      2      5
  FAT1 WILD-TYPE     27     18     25     14      4     24
D21V10, multiclass
        clus
vv       FAT1 MUTATED FAT1 WILD-TYPE
  CLUS_1            4             27
  CLUS_2            0             18
  CLUS_3            1             25
  CLUS_4            3             14
  CLUS_5            2              4
  CLUS_6            5             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = MLL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL MUTATED        2      4      7      4
  MLL WILD-TYPE     32     27     38     13
D22V1, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           2            32
  CLUS_2           4            27
  CLUS_3           7            38
  CLUS_4           4            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MLL MUTATED        8      6      4
  MLL WILD-TYPE     47     42     23
D22V2, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           8            47
  CLUS_2           6            42
  CLUS_3           4            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL MUTATED        5      1      7      2      0
  MLL WILD-TYPE     31     27     26      3     17
D22V3, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           5            31
  CLUS_2           1            27
  CLUS_3           7            26
  CLUS_4           2             3
  CLUS_5           0            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL MUTATED        8      1      6      0
  MLL WILD-TYPE     35     35     15     19
D22V4, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           8            35
  CLUS_2           1            35
  CLUS_3           6            15
  CLUS_4           0            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MLL MUTATED        5      5      8
  MLL WILD-TYPE     30     50     31
D22V5, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           5            30
  CLUS_2           5            50
  CLUS_3           8            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL MUTATED        7      2      6      3
  MLL WILD-TYPE     37     31     27     16
D22V6, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           7            37
  CLUS_2           2            31
  CLUS_3           6            27
  CLUS_4           3            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MLL MUTATED        6      5      7
  MLL WILD-TYPE     31     31     50
D22V7, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           6            31
  CLUS_2           5            31
  CLUS_3           7            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL MUTATED        4      6      1      3      4
  MLL WILD-TYPE     25     30     26     11     20
D22V8, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           4            25
  CLUS_2           6            30
  CLUS_3           1            26
  CLUS_4           3            11
  CLUS_5           4            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL MUTATED        6      2      2      7
  MLL WILD-TYPE     21     14     38     37
D22V9, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           6            21
  CLUS_2           2            14
  CLUS_3           2            38
  CLUS_4           7            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL MUTATED        5      3      1      4      0      4
  MLL WILD-TYPE     26     15     25     13      6     25
D22V10, multiclass
        clus
vv       MLL MUTATED MLL WILD-TYPE
  CLUS_1           5            26
  CLUS_2           3            15
  CLUS_3           1            25
  CLUS_4           4            13
  CLUS_5           0             6
  CLUS_6           4            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        2      2      2      0
  HRAS WILD-TYPE     32     29     43     17
D23V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             32
  CLUS_2            2             29
  CLUS_3            2             43
  CLUS_4            0             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        2      4      0
  HRAS WILD-TYPE     53     44     27
D23V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             53
  CLUS_2            4             44
  CLUS_3            0             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        2      0      1      2      0
  HRAS WILD-TYPE     34     28     32      3     17
D23V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             34
  CLUS_2            0             28
  CLUS_3            1             32
  CLUS_4            2              3
  CLUS_5            0             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        3      0      1      1
  HRAS WILD-TYPE     40     36     20     18
D23V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            3             40
  CLUS_2            0             36
  CLUS_3            1             20
  CLUS_4            1             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        2      2      2
  HRAS WILD-TYPE     33     53     37
D23V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             53
  CLUS_3            2             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        2      1      3      0
  HRAS WILD-TYPE     42     32     30     19
D23V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            2             42
  CLUS_2            1             32
  CLUS_3            3             30
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        1      1      4
  HRAS WILD-TYPE     36     35     53
D23V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             35
  CLUS_3            4             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        1      1      3      0      1
  HRAS WILD-TYPE     28     35     24     14     23
D23V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             28
  CLUS_2            1             35
  CLUS_3            3             24
  CLUS_4            0             14
  CLUS_5            1             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        1      1      3      1
  HRAS WILD-TYPE     26     15     37     43
D23V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             15
  CLUS_3            3             37
  CLUS_4            1             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HRAS MUTATED        1      1      1      0      0      3
  HRAS WILD-TYPE     30     17     25     17      6     26
D23V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            1             30
  CLUS_2            1             17
  CLUS_3            1             25
  CLUS_4            0             17
  CLUS_5            0              6
  CLUS_6            3             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = ACRC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        1      2      1      0
  ACRC WILD-TYPE     33     29     44     17
D24V1, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             33
  CLUS_2            2             29
  CLUS_3            1             44
  CLUS_4            0             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        1      0      3
  ACRC WILD-TYPE     54     48     24
D24V2, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             54
  CLUS_2            0             48
  CLUS_3            3             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACRC MUTATED        1      1      2      0      0
  ACRC WILD-TYPE     35     27     31      5     17
D24V3, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             35
  CLUS_2            1             27
  CLUS_3            2             31
  CLUS_4            0              5
  CLUS_5            0             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        1      2      1      0
  ACRC WILD-TYPE     42     34     20     19
D24V4, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             42
  CLUS_2            2             34
  CLUS_3            1             20
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        0      3      1
  ACRC WILD-TYPE     35     52     38
D24V5, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            0             35
  CLUS_2            3             52
  CLUS_3            1             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        1      2      1      0
  ACRC WILD-TYPE     43     31     32     19
D24V6, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             31
  CLUS_3            1             32
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACRC MUTATED        1      1      2
  ACRC WILD-TYPE     36     35     55
D24V7, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             36
  CLUS_2            1             35
  CLUS_3            2             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACRC MUTATED        1      0      1      1      1
  ACRC WILD-TYPE     28     36     26     13     23
D24V8, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             28
  CLUS_2            0             36
  CLUS_3            1             26
  CLUS_4            1             13
  CLUS_5            1             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACRC MUTATED        1      0      2      1
  ACRC WILD-TYPE     26     16     38     43
D24V9, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             26
  CLUS_2            0             16
  CLUS_3            2             38
  CLUS_4            1             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACRC MUTATED        1      0      2      0      0      1
  ACRC WILD-TYPE     30     18     24     17      6     28
D24V10, multiclass
        clus
vv       ACRC MUTATED ACRC WILD-TYPE
  CLUS_1            1             30
  CLUS_2            0             18
  CLUS_3            2             24
  CLUS_4            0             17
  CLUS_5            0              6
  CLUS_6            1             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = TXNIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        3      1      3      1
  TXNIP WILD-TYPE     31     30     42     16
D25V1, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3              31
  CLUS_2             1              30
  CLUS_3             3              42
  CLUS_4             1              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        3      5      1
  TXNIP WILD-TYPE     52     43     26
D25V2, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3              52
  CLUS_2             5              43
  CLUS_3             1              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXNIP MUTATED        2      2      4      0      1
  TXNIP WILD-TYPE     34     26     29      5     16
D25V3, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2              34
  CLUS_2             2              26
  CLUS_3             4              29
  CLUS_4             0               5
  CLUS_5             1              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        3      2      3      1
  TXNIP WILD-TYPE     40     34     18     18
D25V4, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3              40
  CLUS_2             2              34
  CLUS_3             3              18
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        2      4      3
  TXNIP WILD-TYPE     33     51     36
D25V5, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2              33
  CLUS_2             4              51
  CLUS_3             3              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        6      1      2      0
  TXNIP WILD-TYPE     38     32     31     19
D25V6, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             6              38
  CLUS_2             1              32
  CLUS_3             2              31
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TXNIP MUTATED        3      2      4
  TXNIP WILD-TYPE     34     34     53
D25V7, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             3              34
  CLUS_2             2              34
  CLUS_3             4              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TXNIP MUTATED        2      3      2      1      1
  TXNIP WILD-TYPE     27     33     25     13     23
D25V8, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2              27
  CLUS_2             3              33
  CLUS_3             2              25
  CLUS_4             1              13
  CLUS_5             1              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TXNIP MUTATED        1      2      2      4
  TXNIP WILD-TYPE     26     14     38     40
D25V9, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              14
  CLUS_3             2              38
  CLUS_4             4              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TXNIP MUTATED        2      2      2      2      0      1
  TXNIP WILD-TYPE     29     16     24     15      6     28
D25V10, multiclass
        clus
vv       TXNIP MUTATED TXNIP WILD-TYPE
  CLUS_1             2              29
  CLUS_2             2              16
  CLUS_3             2              24
  CLUS_4             2              15
  CLUS_5             0               6
  CLUS_6             1              28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = ECM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM1 MUTATED        1      1      1      2
  ECM1 WILD-TYPE     33     30     44     15
D26V1, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             30
  CLUS_3            1             44
  CLUS_4            2             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM1 MUTATED        3      2      0
  ECM1 WILD-TYPE     52     46     27
D26V2, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            3             52
  CLUS_2            2             46
  CLUS_3            0             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ECM1 MUTATED        2      1      2      0      0
  ECM1 WILD-TYPE     34     27     31      5     17
D26V3, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            2             34
  CLUS_2            1             27
  CLUS_3            2             31
  CLUS_4            0              5
  CLUS_5            0             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM1 MUTATED        1      4      0      0
  ECM1 WILD-TYPE     42     32     21     19
D26V4, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            1             42
  CLUS_2            4             32
  CLUS_3            0             21
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM1 MUTATED        2      2      1
  ECM1 WILD-TYPE     33     53     38
D26V5, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            2             53
  CLUS_3            1             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM1 MUTATED        1      1      1      2
  ECM1 WILD-TYPE     43     32     32     17
D26V6, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            1             43
  CLUS_2            1             32
  CLUS_3            1             32
  CLUS_4            2             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ECM1 MUTATED        3      0      2
  ECM1 WILD-TYPE     34     36     55
D26V7, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            3             34
  CLUS_2            0             36
  CLUS_3            2             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ECM1 MUTATED        0      1      0      1      3
  ECM1 WILD-TYPE     29     35     27     13     21
D26V8, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            1             35
  CLUS_3            0             27
  CLUS_4            1             13
  CLUS_5            3             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECM1 MUTATED        1      0      1      3
  ECM1 WILD-TYPE     26     16     39     41
D26V9, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            0             16
  CLUS_3            1             39
  CLUS_4            3             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ECM1 MUTATED        3      0      1      0      0      1
  ECM1 WILD-TYPE     28     18     25     17      6     28
D26V10, multiclass
        clus
vv       ECM1 MUTATED ECM1 WILD-TYPE
  CLUS_1            3             28
  CLUS_2            0             18
  CLUS_3            1             25
  CLUS_4            0             17
  CLUS_5            0              6
  CLUS_6            1             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = KLF5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        3      2      4      1
  KLF5 WILD-TYPE     31     29     41     16
D27V1, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            2             29
  CLUS_3            4             41
  CLUS_4            1             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        4      5      1
  KLF5 WILD-TYPE     51     43     26
D27V2, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            4             51
  CLUS_2            5             43
  CLUS_3            1             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF5 MUTATED        4      1      4      1      0
  KLF5 WILD-TYPE     32     27     29      4     17
D27V3, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            4             32
  CLUS_2            1             27
  CLUS_3            4             29
  CLUS_4            1              4
  CLUS_5            0             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        6      2      2      0
  KLF5 WILD-TYPE     37     34     19     19
D27V4, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            6             37
  CLUS_2            2             34
  CLUS_3            2             19
  CLUS_4            0             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        2      5      3
  KLF5 WILD-TYPE     33     50     36
D27V5, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            2             33
  CLUS_2            5             50
  CLUS_3            3             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        2      3      2      3
  KLF5 WILD-TYPE     42     30     31     16
D27V6, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            2             42
  CLUS_2            3             30
  CLUS_3            2             31
  CLUS_4            3             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF5 MUTATED        2      3      5
  KLF5 WILD-TYPE     35     33     52
D27V7, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            2             35
  CLUS_2            3             33
  CLUS_3            5             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF5 MUTATED        0      3      2      3      2
  KLF5 WILD-TYPE     29     33     25     11     22
D27V8, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            0             29
  CLUS_2            3             33
  CLUS_3            2             25
  CLUS_4            3             11
  CLUS_5            2             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF5 MUTATED        0      2      3      4
  KLF5 WILD-TYPE     27     14     37     40
D27V9, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            0             27
  CLUS_2            2             14
  CLUS_3            3             37
  CLUS_4            4             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLF5 MUTATED        2      2      2      3      0      0
  KLF5 WILD-TYPE     29     16     24     14      6     29
D27V10, multiclass
        clus
vv       KLF5 MUTATED KLF5 WILD-TYPE
  CLUS_1            2             29
  CLUS_2            2             16
  CLUS_3            2             24
  CLUS_4            3             14
  CLUS_5            0              6
  CLUS_6            0             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = RBM26 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM26 MUTATED        2      0      2      5
  RBM26 WILD-TYPE     32     31     43     12
D28V1, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              31
  CLUS_3             2              43
  CLUS_4             5              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM26 MUTATED        5      3      1
  RBM26 WILD-TYPE     50     45     26
D28V2, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             5              50
  CLUS_2             3              45
  CLUS_3             1              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM26 MUTATED        1      2      5      0      0
  RBM26 WILD-TYPE     35     26     28      5     17
D28V3, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             1              35
  CLUS_2             2              26
  CLUS_3             5              28
  CLUS_4             0               5
  CLUS_5             0              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM26 MUTATED        3      3      2      0
  RBM26 WILD-TYPE     40     33     19     19
D28V4, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             3              40
  CLUS_2             3              33
  CLUS_3             2              19
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM26 MUTATED        4      2      3
  RBM26 WILD-TYPE     31     53     36
D28V5, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              53
  CLUS_3             3              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM26 MUTATED        3      1      3      2
  RBM26 WILD-TYPE     41     32     30     17
D28V6, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             1              32
  CLUS_3             3              30
  CLUS_4             2              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM26 MUTATED        3      0      6
  RBM26 WILD-TYPE     34     36     51
D28V7, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             0              36
  CLUS_3             6              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM26 MUTATED        2      0      2      2      3
  RBM26 WILD-TYPE     27     36     25     12     21
D28V8, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             2              27
  CLUS_2             0              36
  CLUS_3             2              25
  CLUS_4             2              12
  CLUS_5             3              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM26 MUTATED        2      0      3      4
  RBM26 WILD-TYPE     25     16     37     40
D28V9, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             0              16
  CLUS_3             3              37
  CLUS_4             4              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM26 MUTATED        2      0      1      2      2      2
  RBM26 WILD-TYPE     29     18     25     15      4     27
D28V10, multiclass
        clus
vv       RBM26 MUTATED RBM26 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             0              18
  CLUS_3             1              25
  CLUS_4             2              15
  CLUS_5             2               4
  CLUS_6             2              27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = RAD51C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51C MUTATED        2      0      1      1
  RAD51C WILD-TYPE     32     31     44     16
D29V1, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              2               32
  CLUS_2              0               31
  CLUS_3              1               44
  CLUS_4              1               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAD51C MUTATED        1      3      0
  RAD51C WILD-TYPE     54     45     27
D29V2, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              1               54
  CLUS_2              3               45
  CLUS_3              0               27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51C MUTATED        1      0      2      1      0
  RAD51C WILD-TYPE     35     28     31      4     17
D29V3, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              1               35
  CLUS_2              0               28
  CLUS_3              2               31
  CLUS_4              1                4
  CLUS_5              0               17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51C MUTATED        2      1      1      0
  RAD51C WILD-TYPE     41     35     20     19
D29V4, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              2               41
  CLUS_2              1               35
  CLUS_3              1               20
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAD51C MUTATED        3      0      1
  RAD51C WILD-TYPE     32     55     38
D29V5, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              3               32
  CLUS_2              0               55
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51C MUTATED        2      0      1      1
  RAD51C WILD-TYPE     42     33     32     18
D29V6, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              2               42
  CLUS_2              0               33
  CLUS_3              1               32
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAD51C MUTATED        2      1      1
  RAD51C WILD-TYPE     35     35     56
D29V7, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              2               35
  CLUS_2              1               35
  CLUS_3              1               56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51C MUTATED        1      1      0      0      2
  RAD51C WILD-TYPE     28     35     27     14     22
D29V8, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               35
  CLUS_3              0               27
  CLUS_4              0               14
  CLUS_5              2               22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51C MUTATED        1      0      0      3
  RAD51C WILD-TYPE     26     16     40     41
D29V9, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              1               26
  CLUS_2              0               16
  CLUS_3              0               40
  CLUS_4              3               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAD51C MUTATED        2      0      0      0      0      2
  RAD51C WILD-TYPE     29     18     26     17      6     27
D29V10, multiclass
        clus
vv       RAD51C MUTATED RAD51C WILD-TYPE
  CLUS_1              2               29
  CLUS_2              0               18
  CLUS_3              0               26
  CLUS_4              0               17
  CLUS_5              0                6
  CLUS_6              2               27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = CEP192 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP192 MUTATED        1      2      2      0
  CEP192 WILD-TYPE     33     29     43     17
D30V1, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               29
  CLUS_3              2               43
  CLUS_4              0               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP192 MUTATED        3      2      0
  CEP192 WILD-TYPE     52     46     27
D30V2, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              2               46
  CLUS_3              0               27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP192 MUTATED        1      1      2      0      1
  CEP192 WILD-TYPE     35     27     31      5     16
D30V3, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              1               35
  CLUS_2              1               27
  CLUS_3              2               31
  CLUS_4              0                5
  CLUS_5              1               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP192 MUTATED        3      1      0      1
  CEP192 WILD-TYPE     40     35     21     18
D30V4, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              3               40
  CLUS_2              1               35
  CLUS_3              0               21
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP192 MUTATED        2      2      1
  CEP192 WILD-TYPE     33     53     38
D30V5, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               53
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP192 MUTATED        3      0      1      1
  CEP192 WILD-TYPE     41     33     32     18
D30V6, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              0               33
  CLUS_3              1               32
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP192 MUTATED        0      1      4
  CEP192 WILD-TYPE     37     35     53
D30V7, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              1               35
  CLUS_3              4               53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP192 MUTATED        1      1      0      3      0
  CEP192 WILD-TYPE     28     35     27     11     24
D30V8, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              1               28
  CLUS_2              1               35
  CLUS_3              0               27
  CLUS_4              3               11
  CLUS_5              0               24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP192 MUTATED        1      0      1      3
  CEP192 WILD-TYPE     26     16     39     41
D30V9, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              0               16
  CLUS_3              1               39
  CLUS_4              3               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP192 MUTATED        0      0      1      2      0      2
  CEP192 WILD-TYPE     31     18     25     15      6     27
D30V10, multiclass
        clus
vv       CEP192 MUTATED CEP192 WILD-TYPE
  CLUS_1              0               31
  CLUS_2              0               18
  CLUS_3              1               25
  CLUS_4              2               15
  CLUS_5              0                6
  CLUS_6              2               27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = ASXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        1      4      4      0
  ASXL2 WILD-TYPE     33     27     41     17
D31V1, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              27
  CLUS_3             4              41
  CLUS_4             0              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        3      4      2
  ASXL2 WILD-TYPE     52     44     25
D31V2, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             4              44
  CLUS_3             2              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        4      1      3      1      0
  ASXL2 WILD-TYPE     32     27     30      4     17
D31V3, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             4              32
  CLUS_2             1              27
  CLUS_3             3              30
  CLUS_4             1               4
  CLUS_5             0              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        4      2      3      0
  ASXL2 WILD-TYPE     39     34     18     19
D31V4, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             4              39
  CLUS_2             2              34
  CLUS_3             3              18
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        1      3      5
  ASXL2 WILD-TYPE     34     52     34
D31V5, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             3              52
  CLUS_3             5              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        6      0      2      1
  ASXL2 WILD-TYPE     38     33     31     18
D31V6, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             6              38
  CLUS_2             0              33
  CLUS_3             2              31
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASXL2 MUTATED        3      3      3
  ASXL2 WILD-TYPE     34     33     54
D31V7, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             3              34
  CLUS_2             3              33
  CLUS_3             3              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASXL2 MUTATED        1      3      1      2      2
  ASXL2 WILD-TYPE     28     33     26     12     22
D31V8, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             3              33
  CLUS_3             1              26
  CLUS_4             2              12
  CLUS_5             2              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASXL2 MUTATED        0      3      3      3
  ASXL2 WILD-TYPE     27     13     37     41
D31V9, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             3              13
  CLUS_3             3              37
  CLUS_4             3              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASXL2 MUTATED        2      3      1      2      1      0
  ASXL2 WILD-TYPE     29     15     25     15      5     29
D31V10, multiclass
        clus
vv       ASXL2 MUTATED ASXL2 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             3              15
  CLUS_3             1              25
  CLUS_4             2              15
  CLUS_5             1               5
  CLUS_6             0              29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = PSIP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        3      1      2      1
  PSIP1 WILD-TYPE     31     30     43     16
D32V1, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             1              30
  CLUS_3             2              43
  CLUS_4             1              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSIP1 MUTATED        1      5      1
  PSIP1 WILD-TYPE     54     43     26
D32V2, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              54
  CLUS_2             5              43
  CLUS_3             1              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSIP1 MUTATED        3      2      0      1      0
  PSIP1 WILD-TYPE     33     26     33      4     17
D32V3, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             3              33
  CLUS_2             2              26
  CLUS_3             0              33
  CLUS_4             1               4
  CLUS_5             0              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        4      2      0      0
  PSIP1 WILD-TYPE     39     34     21     19
D32V4, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             4              39
  CLUS_2             2              34
  CLUS_3             0              21
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSIP1 MUTATED        1      4      2
  PSIP1 WILD-TYPE     34     51     37
D32V5, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              34
  CLUS_2             4              51
  CLUS_3             2              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        1      4      1      1
  PSIP1 WILD-TYPE     43     29     32     18
D32V6, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             4              29
  CLUS_3             1              32
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PSIP1 MUTATED        1      2      4
  PSIP1 WILD-TYPE     36     34     53
D32V7, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              36
  CLUS_2             2              34
  CLUS_3             4              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSIP1 MUTATED        0      3      2      1      1
  PSIP1 WILD-TYPE     29     33     25     13     23
D32V8, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             0              29
  CLUS_2             3              33
  CLUS_3             2              25
  CLUS_4             1              13
  CLUS_5             1              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSIP1 MUTATED        1      1      4      1
  PSIP1 WILD-TYPE     26     15     36     43
D32V9, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              15
  CLUS_3             4              36
  CLUS_4             1              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PSIP1 MUTATED        1      1      2      0      2      1
  PSIP1 WILD-TYPE     30     17     24     17      4     28
D32V10, multiclass
        clus
vv       PSIP1 MUTATED PSIP1 WILD-TYPE
  CLUS_1             1              30
  CLUS_2             1              17
  CLUS_3             2              24
  CLUS_4             0              17
  CLUS_5             2               4
  CLUS_6             1              28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = ZNF513 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        4      1      2      0
  ZNF513 WILD-TYPE     30     30     43     17
D33V1, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              4               30
  CLUS_2              1               30
  CLUS_3              2               43
  CLUS_4              0               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF513 MUTATED        3      3      1
  ZNF513 WILD-TYPE     52     45     26
D33V2, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              3               45
  CLUS_3              1               26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF513 MUTATED        3      0      1      1      1
  ZNF513 WILD-TYPE     33     28     32      4     16
D33V3, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               33
  CLUS_2              0               28
  CLUS_3              1               32
  CLUS_4              1                4
  CLUS_5              1               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        4      1      0      1
  ZNF513 WILD-TYPE     39     35     21     18
D33V4, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              4               39
  CLUS_2              1               35
  CLUS_3              0               21
  CLUS_4              1               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF513 MUTATED        3      3      1
  ZNF513 WILD-TYPE     32     52     38
D33V5, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               32
  CLUS_2              3               52
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        3      2      0      2
  ZNF513 WILD-TYPE     41     31     33     17
D33V6, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               41
  CLUS_2              2               31
  CLUS_3              0               33
  CLUS_4              2               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF513 MUTATED        3      2      2
  ZNF513 WILD-TYPE     34     34     55
D33V7, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               34
  CLUS_2              2               34
  CLUS_3              2               55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF513 MUTATED        0      2      1      1      3
  ZNF513 WILD-TYPE     29     34     26     13     21
D33V8, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              2               34
  CLUS_3              1               26
  CLUS_4              1               13
  CLUS_5              3               21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF513 MUTATED        1      0      3      3
  ZNF513 WILD-TYPE     26     16     37     41
D33V9, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              0               16
  CLUS_3              3               37
  CLUS_4              3               41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF513 MUTATED        3      0      3      0      0      1
  ZNF513 WILD-TYPE     28     18     23     17      6     28
D33V10, multiclass
        clus
vv       ZNF513 MUTATED ZNF513 WILD-TYPE
  CLUS_1              3               28
  CLUS_2              0               18
  CLUS_3              3               23
  CLUS_4              0               17
  CLUS_5              0                6
  CLUS_6              1               28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = FOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        5      0      1      1
  FOXA1 WILD-TYPE     29     31     44     16
D34V1, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             0              31
  CLUS_3             1              44
  CLUS_4             1              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        3      3      1
  FOXA1 WILD-TYPE     52     45     26
D34V2, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3              52
  CLUS_2             3              45
  CLUS_3             1              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA1 MUTATED        2      2      1      1      1
  FOXA1 WILD-TYPE     34     26     32      4     16
D34V3, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              34
  CLUS_2             2              26
  CLUS_3             1              32
  CLUS_4             1               4
  CLUS_5             1              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        4      2      1      0
  FOXA1 WILD-TYPE     39     34     20     19
D34V4, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             4              39
  CLUS_2             2              34
  CLUS_3             1              20
  CLUS_4             0              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        4      2      1
  FOXA1 WILD-TYPE     31     53     38
D34V5, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             4              31
  CLUS_2             2              53
  CLUS_3             1              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        3      2      1      1
  FOXA1 WILD-TYPE     41     31     32     18
D34V6, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             2              31
  CLUS_3             1              32
  CLUS_4             1              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXA1 MUTATED        2      2      3
  FOXA1 WILD-TYPE     35     34     54
D34V7, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              35
  CLUS_2             2              34
  CLUS_3             3              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXA1 MUTATED        1      2      1      1      2
  FOXA1 WILD-TYPE     28     34     26     13     22
D34V8, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             1              28
  CLUS_2             2              34
  CLUS_3             1              26
  CLUS_4             1              13
  CLUS_5             2              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXA1 MUTATED        0      2      2      3
  FOXA1 WILD-TYPE     27     14     38     41
D34V9, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             2              14
  CLUS_3             2              38
  CLUS_4             3              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXA1 MUTATED        2      2      2      1      0      0
  FOXA1 WILD-TYPE     29     16     24     16      6     29
D34V10, multiclass
        clus
vv       FOXA1 MUTATED FOXA1 WILD-TYPE
  CLUS_1             2              29
  CLUS_2             2              16
  CLUS_3             2              24
  CLUS_4             1              16
  CLUS_5             0               6
  CLUS_6             0              29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = TRIP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        1      1      2      0
  TRIP11 WILD-TYPE     33     30     43     17
D35V1, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               30
  CLUS_3              2               43
  CLUS_4              0               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        3      1      1
  TRIP11 WILD-TYPE     52     47     26
D35V2, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               52
  CLUS_2              1               47
  CLUS_3              1               26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        1      2      1      0      1
  TRIP11 WILD-TYPE     35     26     32      5     16
D35V3, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              1               35
  CLUS_2              2               26
  CLUS_3              1               32
  CLUS_4              0                5
  CLUS_5              1               16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        4      1      0      0
  TRIP11 WILD-TYPE     39     35     21     19
D35V4, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4               39
  CLUS_2              1               35
  CLUS_3              0               21
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        2      2      1
  TRIP11 WILD-TYPE     33     53     38
D35V5, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              2               33
  CLUS_2              2               53
  CLUS_3              1               38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        2      2      1      0
  TRIP11 WILD-TYPE     42     31     32     19
D35V6, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              2               42
  CLUS_2              2               31
  CLUS_3              1               32
  CLUS_4              0               19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        0      3      2
  TRIP11 WILD-TYPE     37     33     55
D35V7, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              0               37
  CLUS_2              3               33
  CLUS_3              2               55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        0      3      1      1      0
  TRIP11 WILD-TYPE     29     33     26     13     24
D35V8, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              0               29
  CLUS_2              3               33
  CLUS_3              1               26
  CLUS_4              1               13
  CLUS_5              0               24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        1      0      2      2
  TRIP11 WILD-TYPE     26     16     38     42
D35V9, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              0               16
  CLUS_3              2               38
  CLUS_4              2               42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP11 MUTATED        1      1      2      1      0      0
  TRIP11 WILD-TYPE     30     17     24     16      6     29
D35V10, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              1               30
  CLUS_2              1               17
  CLUS_3              2               24
  CLUS_4              1               16
  CLUS_5              0                6
  CLUS_6              0               29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
