		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.2	101 (25%)	307	9.9999e-06	0.007	0.10038	1	0.18208	1	0.50769	1	0.93763	1	0.29016	1	0.0351	1	0.01922	1	0.24209	1	0.01148	1
amp_1q21.3	202 (50%)	206	9.9999e-06	0.007	0.053019	1	0.39166	1	0.72154	1	0.04804	1	0.0072399	1	0.14013	1	0.04308	1	0.621	1	0.00373	1
amp_1q23.3	216 (53%)	192	9.9999e-06	0.007	0.00383	1	0.55171	1	0.88554	1	0.10629	1	0.0096099	1	0.00203	1	0.00319	1	0.04134	1	0.00149	0.84
amp_2p25.1	152 (37%)	256	9.9999e-06	0.007	0.00024	0.142	0.80098	1	0.61286	1	0.03651	1	0.00139	0.785	0.02379	1	0.01635	1	0.01632	1	3e-05	0.0187
amp_3p25.2	190 (47%)	218	9.9999e-06	0.007	0.053149	1	0.079019	1	0.01094	1	9.9999e-06	0.007	9.9999e-06	0.007	0.00019	0.114	9.9999e-06	0.007	9.9999e-06	0.007	9.9999e-06	0.007
amp_3q26.33	218 (53%)	190	9.9999e-06	0.007	0.52166	1	0.35317	1	0.092739	1	0.31512	1	0.13193	1	0.54014	1	0.0056399	1	0.1809	1	9.9999e-06	0.007
amp_4p16.3	74 (18%)	334	0.21258	1	0.00027	0.158	0.03384	1	0.02658	1	0.00043	0.248	2e-05	0.0125	9.9999e-06	0.007	0.02576	1	0.058079	1	0.02204	1
amp_4q13.3	62 (15%)	346	5.9999e-05	0.0368	0.02692	1	0.58225	1	0.70246	1	0.26463	1	0.50168	1	0.0094499	1	0.066769	1	0.065519	1	0.04346	1
amp_5p15.33	206 (50%)	202	9.9999e-06	0.007	0.16467	1	0.02159	1	0.17764	1	0.61554	1	0.076499	1	0.3909	1	3e-05	0.0187	0.32862	1	0.00085999	0.489
amp_6p22.3	171 (42%)	237	9.9999e-06	0.007	0.10272	1	0.33581	1	0.43324	1	0.42841	1	0.23401	1	0.070839	1	0.26183	1	0.26032	1	9.9999e-06	0.007
amp_6q21	34 (8%)	374	0.00233	1	0.82445	1	0.51431	1	0.079229	1	0.3937	1	0.25461	1	0.82066	1	0.87527	1	0.38168	1	0.18548	1
amp_6q23.3	46 (11%)	362	0.00046	0.264	0.81094	1	0.9448	1	0.069569	1	0.3042	1	0.67057	1	0.13981	1	0.099769	1	0.14788	1	0.12573	1
amp_7p21.1	201 (49%)	207	9.9999e-06	0.007	0.02324	1	0.13324	1	0.31733	1	0.67339	1	0.04398	1	0.17103	1	0.0069699	1	0.40075	1	9.9999e-06	0.007
amp_7p11.2	190 (47%)	218	9.9999e-06	0.007	0.02793	1	0.089789	1	0.59893	1	0.72284	1	0.16587	1	0.51394	1	0.0364	1	0.17026	1	5e-05	0.0307
amp_8p11.23	124 (30%)	284	9.9999e-06	0.007	0.094899	1	0.74873	1	0.79117	1	0.65846	1	0.32316	1	0.02864	1	0.51292	1	0.68105	1	0.9527	1
amp_8q22.3	264 (65%)	144	9.9999e-06	0.007	0.00208	1	0.02428	1	0.19024	1	0.23087	1	0.25942	1	0.01916	1	0.0059699	1	0.071959	1	8.9999e-05	0.0548
amp_9p24.1	88 (22%)	320	9.9999e-06	0.007	0.02544	1	0.67398	1	0.32616	1	0.11217	1	0.03809	1	0.69304	1	0.04422	1	0.00012	0.0725	6.9999e-05	0.0427
amp_10p14	182 (45%)	226	9.9999e-06	0.007	0.29376	1	0.3547	1	0.42165	1	0.16786	1	0.00029	0.17	0.10328	1	0.15443	1	0.45281	1	9.9999e-06	0.007
amp_11p13	51 (12%)	357	9.9999e-06	0.007	0.0050199	1	0.0331	1	0.00338	1	0.18465	1	0.01359	1	0.25274	1	0.1181	1	0.052259	1	0.00295	1
amp_11q13.3	135 (33%)	273	9.9999e-06	0.007	0.30943	1	0.23232	1	0.077889	1	0.071049	1	0.03049	1	0.3752	1	0.17427	1	0.32986	1	0.71123	1
amp_11q22.2	71 (17%)	337	0.00012	0.0725	0.27477	1	0.73351	1	0.41163	1	0.84733	1	0.03185	1	0.04229	1	0.02266	1	0.00038	0.221	0.02081	1
amp_12p12.1	132 (32%)	276	2e-05	0.0125	0.04586	1	0.69244	1	0.46948	1	0.53257	1	0.37566	1	0.82158	1	0.02771	1	0.074909	1	0.03855	1
amp_12q15	118 (29%)	290	0.00013	0.0783	0.41039	1	0.03787	1	0.01965	1	0.00217	1	0.00296	1	0.21516	1	0.02107	1	0.0075499	1	0.00044	0.253
amp_13q22.1	128 (31%)	280	9.9999e-05	0.0607	0.35198	1	0.96191	1	0.84937	1	0.97775	1	0.61067	1	0.87734	1	0.55641	1	0.73189	1	0.22412	1
amp_16p13.2	87 (21%)	321	9.9999e-06	0.007	0.12166	1	0.79283	1	0.89883	1	0.51404	1	0.18103	1	0.17958	1	0.071749	1	0.2292	1	0.02247	1
amp_16p11.2	97 (24%)	311	3e-05	0.0187	0.14934	1	0.46605	1	0.36933	1	0.93353	1	0.44253	1	0.24773	1	0.31142	1	0.95722	1	0.071949	1
amp_16q22.1	108 (26%)	300	0.00371	1	0.2757	1	0.04286	1	0.02354	1	0.03171	1	0.03749	1	0.04314	1	0.0084499	1	0.15263	1	0.0071199	1
amp_17p11.2	87 (21%)	321	0.00354	1	0.12895	1	0.68156	1	0.94617	1	0.074919	1	0.41999	1	0.63693	1	0.84394	1	0.53146	1	0.34214	1
amp_17q11.2	174 (43%)	234	9.9999e-06	0.007	0.00095999	0.544	0.03213	1	0.087989	1	8.9999e-05	0.0548	0.00234	1	0.04568	1	0.01195	1	0.00368	1	9.9999e-06	0.007
amp_17q12	165 (40%)	243	9.9999e-06	0.007	0.02714	1	0.13171	1	0.03692	1	0.00296	1	0.068779	1	0.00461	1	0.03534	1	0.01863	1	9.9999e-06	0.007
amp_17q23.3	194 (48%)	214	9.9999e-06	0.007	0.075959	1	0.10765	1	0.14006	1	0.29738	1	0.69331	1	0.18408	1	0.46872	1	0.14542	1	0.00015	0.09
amp_19q12	165 (40%)	243	9.9999e-06	0.007	0.55575	1	0.7529	1	0.78127	1	0.29915	1	0.10563	1	0.2222	1	0.0106	1	0.1576	1	0.02633	1
amp_19q13.43	155 (38%)	253	9.9999e-06	0.007	0.098839	1	0.16824	1	0.30385	1	0.67638	1	0.89792	1	0.41848	1	0.00263	1	0.01673	1	0.00281	1
amp_20q11.21	263 (64%)	145	9.9999e-06	0.007	0.12871	1	0.71246	1	0.054479	1	0.68234	1	0.03545	1	0.34382	1	0.03082	1	0.19496	1	0.00081999	0.467
amp_22q12.2	87 (21%)	321	9.9999e-06	0.007	0.00339	1	0.41572	1	0.76218	1	0.03973	1	0.21573	1	0.12889	1	0.25606	1	0.47772	1	0.04837	1
del_1p36.11	91 (22%)	317	0.34911	1	0.04433	1	0.16524	1	0.024	1	0.83172	1	0.88846	1	0.70468	1	0.04726	1	0.13297	1	0.25332	1
del_1q32.1	71 (17%)	337	0.00024	0.142	0.40883	1	0.35255	1	0.60493	1	0.17131	1	0.067079	1	0.55041	1	0.27666	1	0.40188	1	0.13145	1
del_2q22.1	134 (33%)	274	0.00042	0.242	0.0069999	1	0.27438	1	0.94252	1	0.098569	1	0.2164	1	0.060009	1	0.25024	1	0.18677	1	0.0088499	1
del_2q34	174 (43%)	234	9.9999e-06	0.007	0.01501	1	0.75071	1	0.58193	1	0.46051	1	0.45292	1	0.10954	1	0.53302	1	0.487	1	0.00066999	0.384
del_2q37.1	207 (51%)	201	9.9999e-06	0.007	0.00023	0.136	0.59321	1	0.44182	1	0.10004	1	0.089849	1	0.02197	1	0.060609	1	0.18445	1	0.0054899	1
del_3p14.2	117 (29%)	291	0.00011	0.0665	0.1078	1	0.03429	1	0.01752	1	9.9999e-06	0.007	9.9999e-06	0.007	0.88143	1	4e-05	0.0246	5.9999e-05	0.0368	9.9999e-06	0.007
del_4q22.1	162 (40%)	246	9.9999e-06	0.007	0.0083799	1	0.5093	1	0.50484	1	0.067929	1	0.01919	1	0.89733	1	0.0074499	1	0.02419	1	0.01394	1
del_4q34.2	177 (43%)	231	9.9999e-06	0.007	0.03989	1	0.48689	1	0.77181	1	0.36841	1	0.20068	1	0.29224	1	0.063689	1	0.48768	1	0.00079999	0.457
del_5q12.1	202 (50%)	206	9.9999e-06	0.007	0.01496	1	0.93525	1	0.57321	1	0.25473	1	0.0087999	1	0.02235	1	0.00013	0.0783	0.060329	1	0.00092999	0.528
del_6p25.3	106 (26%)	302	9.9999e-06	0.007	0.0482	1	0.91186	1	0.94702	1	0.54251	1	0.052729	1	0.25338	1	0.03116	1	0.051859	1	0.0076499	1
del_6q21	190 (47%)	218	9.9999e-06	0.007	0.04903	1	0.8828	1	0.47038	1	0.49109	1	0.076649	1	0.0152	1	0.00022	0.131	0.23845	1	9.9999e-06	0.007
del_6q27	190 (47%)	218	9.9999e-06	0.007	0.02694	1	0.65835	1	0.43381	1	0.41701	1	0.02004	1	0.02221	1	2e-05	0.0125	0.37564	1	9.9999e-06	0.007
del_7q36.3	59 (14%)	349	4e-04	0.232	0.61695	1	0.13666	1	0.1325	1	0.4374	1	0.2958	1	0.46588	1	0.00157	0.884	0.054579	1	0.00335	1
del_8p23.1	245 (60%)	163	9.9999e-06	0.007	3e-04	0.175	0.59047	1	0.17713	1	0.26917	1	0.03854	1	0.073379	1	0.02648	1	0.16092	1	0.072379	1
del_9p23	177 (43%)	231	9.9999e-06	0.007	0.02681	1	0.21949	1	0.20499	1	0.26751	1	0.03587	1	0.065309	1	0.01671	1	3e-05	0.0187	0.00078999	0.452
del_9p21.3	239 (59%)	169	9.9999e-06	0.007	0.26624	1	0.45077	1	0.0096499	1	0.23223	1	0.12	1	0.15275	1	0.094379	1	0.03686	1	9.9999e-05	0.0607
del_9q33.2	168 (41%)	240	9.9999e-06	0.007	9.9999e-06	0.007	0.067169	1	0.00298	1	9.9999e-06	0.007	9.9999e-06	0.007	4e-04	0.232	0.00032	0.186	9.9999e-06	0.007	9.9999e-06	0.007
del_10p11.21	74 (18%)	334	0.081969	1	0.39508	1	0.53502	1	0.24396	1	0.00322	1	0.00311	1	0.7815	1	0.057309	1	0.37309	1	0.50155	1
del_10q23.31	167 (41%)	241	9.9999e-06	0.007	0.053619	1	0.62749	1	0.59373	1	0.12837	1	0.89528	1	0.32492	1	0.092959	1	0.60961	1	0.064569	1
del_11p15.5	211 (52%)	197	9.9999e-06	0.007	3e-04	0.175	0.36524	1	0.24221	1	0.00222	1	0.00026	0.153	0.02148	1	0.29861	1	0.01275	1	0.01208	1
del_11q23.3	156 (38%)	252	2e-04	0.119	0.00312	1	0.65598	1	0.70409	1	0.069389	1	0.25711	1	0.23562	1	0.17303	1	0.58428	1	0.51909	1
del_11q25	144 (35%)	264	3e-05	0.0187	0.0077599	1	0.77319	1	0.62054	1	0.051259	1	0.25737	1	0.381	1	0.19742	1	0.47353	1	0.29198	1
del_12p13.1	68 (17%)	340	0.00343	1	0.072799	1	0.78045	1	0.66245	1	0.0073099	1	0.00025	0.147	0.57112	1	0.61895	1	0.0165	1	0.21166	1
del_12q24.33	88 (22%)	320	2e-05	0.0125	0.92904	1	0.91534	1	0.32025	1	0.60427	1	0.65068	1	1	1	0.62665	1	0.98197	1	0.24206	1
del_13q14.2	156 (38%)	252	9.9999e-06	0.007	0.25358	1	0.0078299	1	0.00359	1	0.01284	1	0.03324	1	0.5363	1	3e-04	0.175	0.0056199	1	9.9999e-06	0.007
del_14q24.1	137 (34%)	271	9.9999e-06	0.007	0.12363	1	0.3923	1	0.34608	1	0.00365	1	9.9999e-06	0.007	0.0070799	1	0.00102	0.577	0.00333	1	3e-05	0.0187
del_15q13.1	159 (39%)	249	9.9999e-06	0.007	0.0065399	1	0.31726	1	0.56877	1	0.70117	1	0.094609	1	0.02624	1	5.9999e-05	0.0368	0.02539	1	9.9999e-06	0.007
del_16p13.3	173 (42%)	235	9.9999e-06	0.007	0.0079499	1	0.21164	1	0.46764	1	0.64389	1	0.8554	1	0.70263	1	0.04325	1	0.52184	1	0.01214	1
del_16q23.1	119 (29%)	289	9.9999e-06	0.007	0.01507	1	0.50165	1	0.063689	1	0.057219	1	0.27498	1	0.13105	1	0.0251	1	0.085189	1	5e-05	0.0307
del_17p12	209 (51%)	199	9.9999e-06	0.007	0.03432	1	0.20083	1	0.60928	1	0.28852	1	0.00351	1	0.60514	1	0.00019	0.114	0.35855	1	0.00019	0.114
del_18q23	178 (44%)	230	0.00041	0.237	0.10548	1	0.63163	1	0.78498	1	0.21443	1	0.61646	1	9.9999e-06	0.007	9.9999e-06	0.007	0.033	1	0.0067199	1
del_19p13.3	145 (36%)	263	9.9999e-06	0.007	0.82199	1	0.93786	1	0.56299	1	0.02721	1	0.0053099	1	0.33372	1	0.0091799	1	0.21086	1	2e-04	0.119
del_22q13.32	187 (46%)	221	9.9999e-06	0.007	0.00023	0.136	0.54898	1	0.01622	1	0.01412	1	0.0301	1	0.28731	1	0.00159	0.894	0.0090499	1	9.9999e-06	0.007
del_xp11.3	92 (23%)	316	0.093189	1	0.39552	1	0.73531	1	0.61826	1	0.28198	1	0.94818	1	0.10613	1	0.29016	1	0.51828	1	0.0329	1
del_xq21.33	84 (21%)	324	0.01671	1	0.055069	1	0.98023	1	0.4359	1	0.054679	1	0.19908	1	0.088169	1	0.050919	1	0.01134	1	0.01768	1
