[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
                                       Clinical feature                        
Time to Death                          "Time to Death"                         
AGE                                    "AGE"                                   
AGE_mutation.rate                      "AGE_mutation rate"                     
NEOPLASM.DISEASESTAGE                  "NEOPLASM DISEASESTAGE"                 
PATHOLOGY.T.STAGE                      "PATHOLOGY T STAGE"                     
PATHOLOGY.N.STAGE                      "PATHOLOGY N STAGE"                     
PATHOLOGY.M.STAGE                      "PATHOLOGY M STAGE"                     
GENDER                                 "GENDER"                                
HISTOLOGICAL.TYPE                      "HISTOLOGICAL TYPE"                     
RADIATIONS.RADIATION.REGIMENINDICATION "RADIATIONS RADIATION REGIMENINDICATION"
NUMBER.OF.LYMPH.NODES                  "NUMBER OF LYMPH NODES"                 
RACE                                   "RACE"                                  
ETHNICITY                              "ETHNICITY"                             
                                       Statistical test            
Time to Death                          "Cox regression test"       
AGE                                    "Spearman correlation test" 
AGE_mutation.rate                      "Linear Regression Analysis"
NEOPLASM.DISEASESTAGE                  "Kruskal-Wallis test"       
PATHOLOGY.T.STAGE                      "Spearman correlation test" 
PATHOLOGY.N.STAGE                      "Spearman correlation test" 
PATHOLOGY.M.STAGE                      "Kruskal-Wallis test"       
GENDER                                 "Wilcoxon test"             
HISTOLOGICAL.TYPE                      "Kruskal-Wallis test"       
RADIATIONS.RADIATION.REGIMENINDICATION "Wilcoxon test"             
NUMBER.OF.LYMPH.NODES                  "Spearman correlation test" 
RACE                                   "Kruskal-Wallis test"       
ETHNICITY                              "Wilcoxon test"             
                                       Significant variables
Time to Death                          "N=2"                
AGE                                    "N=2"                
AGE_mutation.rate                      "N=2"                
NEOPLASM.DISEASESTAGE                  "N=0"                
PATHOLOGY.T.STAGE                      "N=2"                
PATHOLOGY.N.STAGE                      "N=1"                
PATHOLOGY.M.STAGE                      "N=0"                
GENDER                                 "N=0"                
HISTOLOGICAL.TYPE                      "N=2"                
RADIATIONS.RADIATION.REGIMENINDICATION "N=0"                
NUMBER.OF.LYMPH.NODES                  "N=2"                
RACE                                   "N=2"                
ETHNICITY                              "N=0"                
                                       Associated with               
Time to Death                          "shorter survival"            
AGE                                    "older"                       
AGE_mutation.rate                      " "                           
NEOPLASM.DISEASESTAGE                  " "                           
PATHOLOGY.T.STAGE                      "higher stage"                
PATHOLOGY.N.STAGE                      "higher stage"                
PATHOLOGY.M.STAGE                      " "                           
GENDER                                 " "                           
HISTOLOGICAL.TYPE                      " "                           
RADIATIONS.RADIATION.REGIMENINDICATION " "                           
NUMBER.OF.LYMPH.NODES                  "higher number.of.lymph.nodes"
RACE                                   " "                           
ETHNICITY                              " "                           
                                       &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Time to Death                          "N=2"                                                                                     
AGE                                    "N=2"                                                                                     
AGE_mutation.rate                      " "                                                                                       
NEOPLASM.DISEASESTAGE                  " "                                                                                       
PATHOLOGY.T.STAGE                      "N=2"                                                                                     
PATHOLOGY.N.STAGE                      "N=0"                                                                                     
PATHOLOGY.M.STAGE                      " "                                                                                       
GENDER                                 " "                                                                                       
HISTOLOGICAL.TYPE                      " "                                                                                       
RADIATIONS.RADIATION.REGIMENINDICATION " "                                                                                       
NUMBER.OF.LYMPH.NODES                  "N=0"                                                                                     
RACE                                   " "                                                                                       
ETHNICITY                              " "                                                                                       
                                       Associated with                    
Time to Death                          "longer survival"             "N=0"
AGE                                    "younger"                     "N=0"
AGE_mutation.rate                      " "                           " "  
NEOPLASM.DISEASESTAGE                  " "                           " "  
PATHOLOGY.T.STAGE                      "lower stage"                 "N=0"
PATHOLOGY.N.STAGE                      "lower stage"                 "N=1"
PATHOLOGY.M.STAGE                      " "                           " "  
GENDER                                 " "                           " "  
HISTOLOGICAL.TYPE                      " "                           " "  
RADIATIONS.RADIATION.REGIMENINDICATION " "                           " "  
NUMBER.OF.LYMPH.NODES                  "lower number.of.lymph.nodes" "N=2"
RACE                                   " "                           " "  
ETHNICITY                              " "                           " "  
