[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BRCA-TP/11724890/BRCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/11550286/transformed.cor.cli.txt"

nPatients in clinical file=1100, in cluster file=1079, common to both=1079
[1]   67 1079
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          250                           829 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          250                           829 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          781                           298 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          781                           298 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        789                         290 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        789                         290 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          198                           881 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          198                           881 
[1] "AMP PEAK  5(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           340                            739 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           340                            739 
[1] "AMP PEAK  6(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          163                           916 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          163                           916 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           393                            686 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           393                            686 
[1] "AMP PEAK  8(6P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        298                         781 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        298                         781 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        201                         878 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        201                         878 
[1] "AMP PEAK 10(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           411                            668 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           411                            668 
[1] "AMP PEAK 11(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           420                            659 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           420                            659 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           677                            402 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           677                            402 
[1] "AMP PEAK 13(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           304                            775 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           304                            775 
[1] "AMP PEAK 14(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            929 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           150                            929 
[1] "AMP PEAK 15(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         222                          857 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         222                          857 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           397                            682 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           397                            682 
[1] "AMP PEAK 17(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           266                            813 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           266                            813 
[1] "AMP PEAK 18(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            281                             798 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            281                             798 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         275                          804 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         275                          804 
[1] "AMP PEAK 20(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         179                          900 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         179                          900 
[1] "AMP PEAK 21(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           220                            859 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           220                            859 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           194                            885 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           194                            885 
[1] "AMP PEAK 23(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           146                            933 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           146                            933 
[1] "AMP PEAK 24(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         332                          747 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         332                          747 
[1] "AMP PEAK 25(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           425                            654 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           425                            654 
[1] "AMP PEAK 26(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            229                             850 
  AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE 
                            229                             850 
[1] "AMP PEAK 27(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         283                          796 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         283                          796 
[1] "AMP PEAK 28(19Q13.42) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            275                             804 
  AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE 
                            275                             804 
[1] "AMP PEAK 29(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           547                            532 
  AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE 
                           547                            532 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           451                            628 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           451                            628 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          361                           718 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          361                           718 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          316                           763 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          316                           763 
[1] "DEL PEAK  4(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            732 
  DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE 
                           347                            732 
[1] "DEL PEAK  5(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           740 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          339                           740 
[1] "DEL PEAK  6(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          345                           734 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                          345                           734 
[1] "DEL PEAK  7(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           799 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          280                           799 
[1] "DEL PEAK  8(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          272                           807 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          272                           807 
[1] "DEL PEAK  9(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           875 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          204                           875 
[1] "DEL PEAK 10(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         721 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        358                         721 
[1] "DEL PEAK 11(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         704 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        375                         704 
[1] "DEL PEAK 12(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          136                           943 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          136                           943 
[1] "DEL PEAK 13(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          199                           880 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          199                           880 
[1] "DEL PEAK 14(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          557                           522 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          557                           522 
[1] "DEL PEAK 15(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            879 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           200                            879 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        324                         755 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        324                         755 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          363                           716 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          363                           716 
[1] "DEL PEAK 18(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           293                            786 
  DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE 
                           293                            786 
[1] "DEL PEAK 19(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          296                           783 
  DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE 
                          296                           783 
[1] "DEL PEAK 20(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             759 
  DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE 
                            320                             759 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           319                            760 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           319                            760 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            770 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           309                            770 
[1] "DEL PEAK 23(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE 
                           546                            533 
  DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE 
                           546                            533 
[1] "DEL PEAK 24(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                           188                            891 
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                           188                            891 
[1] "DEL PEAK 25(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE 
                           201                            878 
  DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE 
                           201                            878 
[1] "DEL PEAK 26(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE 
                            211                             868 
  DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE 
                            211                             868 
[1] "DEL PEAK 27(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE 
                           494                            585 
  DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE 
                           494                            585 
[1] "DEL PEAK 28(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE 
                           353                            726 
  DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE 
                           353                            726 
[1] "DEL PEAK 29(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE 
                           374                            705 
  DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE 
                           374                            705 
[1] "DEL PEAK 30(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE 
                           692                            387 
  DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE 
                           692                            387 
[1] "DEL PEAK 31(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE 
                         650                          429 
  DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE 
                         650                          429 
[1] "DEL PEAK 32(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE 
                            371                             708 
  DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE 
                            371                             708 
[1] "DEL PEAK 33(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                         354                          725 
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                         354                          725 
[1] "DEL PEAK 34(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                           363                            716 
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                           363                            716 
[1] "DEL PEAK 35(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE 
                            216                             863 
  DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE 
                            216                             863 
[1] "DEL PEAK 36(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE 
                         160                          919 
  DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE 
                         160                          919 
[1] "DEL PEAK 37(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE 
                           217                            862 
  DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE 
                           217                            862 
[1] "DEL PEAK 38(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                            492                             587 
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                            492                             587 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 1079 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 1079 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED        4      3     14     51     24     15
  AMP PEAK  1(1P22.3) WILD-TYPE     17     33    105     45     85     57
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  1(1P22.3) MUTATED        2      2
  AMP PEAK  1(1P22.3) WILD-TYPE     18     38
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          14                           105
  CLUS_4                          51                            45
  CLUS_5                          24                            85
  CLUS_6                          15                            57
  CLUS_7                           2                            18
  CLUS_8                           2                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       14     19     24     47     11
  AMP PEAK  1(1P22.3) WILD-TYPE     87    133     90     41     47
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          14                            87
  CLUS_2                          19                           133
  CLUS_3                          24                            90
  CLUS_4                          47                            41
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       40     54     31    111     14
  AMP PEAK  1(1P22.3) WILD-TYPE    220    358     62    154     35
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          40                           220
  CLUS_2                          54                           358
  CLUS_3                          31                            62
  CLUS_4                         111                           154
  CLUS_5                          14                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       72     30     33     11     23
  AMP PEAK  1(1P22.3) WILD-TYPE     60    167    144     77    105
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          72                            60
  CLUS_2                          30                           167
  CLUS_3                          33                           144
  CLUS_4                          11                            77
  CLUS_5                          23                           105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       52     27     17
  AMP PEAK  1(1P22.3) WILD-TYPE     97    105    100
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          52                            97
  CLUS_2                          27                           105
  CLUS_3                          17                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       15     14     45     17      5
  AMP PEAK  1(1P22.3) WILD-TYPE     49     92     45     90     26
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          14                            92
  CLUS_3                          45                            45
  CLUS_4                          17                            90
  CLUS_5                           5                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       96    130     22
  AMP PEAK  1(1P22.3) WILD-TYPE    447    168    210
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          96                           447
  CLUS_2                         130                           168
  CLUS_3                          22                           210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       34     36     34     29     99     16
  AMP PEAK  1(1P22.3) WILD-TYPE    185    128    272    112     84     44
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          34                           185
  CLUS_2                          36                           128
  CLUS_3                          34                           272
  CLUS_4                          29                           112
  CLUS_5                          99                            84
  CLUS_6                          16                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED      126     42     79
  AMP PEAK  1(1P22.3) WILD-TYPE    205    211    397
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                         126                           205
  CLUS_2                          42                           211
  CLUS_3                          79                           397
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       37     42     50     29      9     80
  AMP PEAK  1(1P22.3) WILD-TYPE    194    118    272     98     77     54
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          37                           194
  CLUS_2                          42                           118
  CLUS_3                          50                           272
  CLUS_4                          29                            98
  CLUS_5                           9                            77
  CLUS_6                          80                            54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       29     73     13     12     30
  AMP PEAK  1(1P22.3) WILD-TYPE    151     66     86     99    103
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          29                           151
  CLUS_2                          73                            66
  CLUS_3                          13                            86
  CLUS_4                          12                            99
  CLUS_5                          30                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       97     48     12
  AMP PEAK  1(1P22.3) WILD-TYPE    208    199     98
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          97                           208
  CLUS_2                          48                           199
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       16     19     75     88     88     54
  AMP PEAK  2(1Q21.3) WILD-TYPE      5     17     44      8     21     18
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(1Q21.3) MUTATED       10     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     10     11
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          19                            17
  CLUS_3                          75                            44
  CLUS_4                          88                             8
  CLUS_5                          88                            21
  CLUS_6                          54                            18
  CLUS_7                          10                            10
  CLUS_8                          29                            11
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       62    102     89     81     45
  AMP PEAK  2(1Q21.3) WILD-TYPE     39     50     25      7     13
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          62                            39
  CLUS_2                         102                            50
  CLUS_3                          89                            25
  CLUS_4                          81                             7
  CLUS_5                          45                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      193    250     92    210     36
  AMP PEAK  2(1Q21.3) WILD-TYPE     67    162      1     55     13
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         193                            67
  CLUS_2                         250                           162
  CLUS_3                          92                             1
  CLUS_4                         210                            55
  CLUS_5                          36                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      112    144    130     65     70
  AMP PEAK  2(1Q21.3) WILD-TYPE     20     53     47     23     58
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         112                            20
  CLUS_2                         144                            53
  CLUS_3                         130                            47
  CLUS_4                          65                            23
  CLUS_5                          70                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      120     96     79
  AMP PEAK  2(1Q21.3) WILD-TYPE     29     36     38
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         120                            29
  CLUS_2                          96                            36
  CLUS_3                          79                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       49     69     77     75     25
  AMP PEAK  2(1Q21.3) WILD-TYPE     15     37     13     32      6
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          49                            15
  CLUS_2                          69                            37
  CLUS_3                          77                            13
  CLUS_4                          75                            32
  CLUS_5                          25                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      390    236    150
  AMP PEAK  2(1Q21.3) WILD-TYPE    153     62     82
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         390                           153
  CLUS_2                         236                            62
  CLUS_3                         150                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      137    131    202    112    159     35
  AMP PEAK  2(1Q21.3) WILD-TYPE     82     33    104     29     24     25
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         137                            82
  CLUS_2                         131                            33
  CLUS_3                         202                           104
  CLUS_4                         112                            29
  CLUS_5                         159                            24
  CLUS_6                          35                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      263    166    335
  AMP PEAK  2(1Q21.3) WILD-TYPE     68     87    141
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         263                            68
  CLUS_2                         166                            87
  CLUS_3                         335                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      158    113    215    109     48    121
  AMP PEAK  2(1Q21.3) WILD-TYPE     73     47    107     18     38     13
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         158                            73
  CLUS_2                         113                            47
  CLUS_3                         215                           107
  CLUS_4                         109                            18
  CLUS_5                          48                            38
  CLUS_6                         121                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      125    114     70     64     90
  AMP PEAK  2(1Q21.3) WILD-TYPE     55     25     29     47     43
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         125                            55
  CLUS_2                         114                            25
  CLUS_3                          70                            29
  CLUS_4                          64                            47
  CLUS_5                          90                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      223    171     69
  AMP PEAK  2(1Q21.3) WILD-TYPE     82     76     41
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         223                            82
  CLUS_2                         171                            76
  CLUS_3                          69                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(1Q44) MUTATED       16     20     69     78     91     57     11
  AMP PEAK  3(1Q44) WILD-TYPE      5     16     50     18     18     15      9
                             vv
clus                          CLUS_8
  AMP PEAK  3(1Q44) MUTATED       32
  AMP PEAK  3(1Q44) WILD-TYPE      8
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                           5
  CLUS_2                        20                          16
  CLUS_3                        69                          50
  CLUS_4                        78                          18
  CLUS_5                        91                          18
  CLUS_6                        57                          15
  CLUS_7                        11                           9
  CLUS_8                        32                           8
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       59    107     92     72     44
  AMP PEAK  3(1Q44) WILD-TYPE     42     45     22     16     14
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        59                          42
  CLUS_2                       107                          45
  CLUS_3                        92                          22
  CLUS_4                        72                          16
  CLUS_5                        44                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      197    263     93    203     33
  AMP PEAK  3(1Q44) WILD-TYPE     63    149      0     62     16
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       197                          63
  CLUS_2                       263                         149
  CLUS_3                        93                           0
  CLUS_4                       203                          62
  CLUS_5                        33                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      100    150    135     67     75
  AMP PEAK  3(1Q44) WILD-TYPE     32     47     42     21     53
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       100                          32
  CLUS_2                       150                          47
  CLUS_3                       135                          42
  CLUS_4                        67                          21
  CLUS_5                        75                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      111     95     84
  AMP PEAK  3(1Q44) WILD-TYPE     38     37     33
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       111                          38
  CLUS_2                        95                          37
  CLUS_3                        84                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       50     74     70     72     24
  AMP PEAK  3(1Q44) WILD-TYPE     14     32     20     35      7
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        50                          14
  CLUS_2                        74                          32
  CLUS_3                        70                          20
  CLUS_4                        72                          35
  CLUS_5                        24                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      397    220    167
  AMP PEAK  3(1Q44) WILD-TYPE    146     78     65
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       397                         146
  CLUS_2                       220                          78
  CLUS_3                       167                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED      137    134    224    109    143     37
  AMP PEAK  3(1Q44) WILD-TYPE     82     30     82     32     40     23
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       137                          82
  CLUS_2                       134                          30
  CLUS_3                       224                          82
  CLUS_4                       109                          32
  CLUS_5                       143                          40
  CLUS_6                        37                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      243    188    342
  AMP PEAK  3(1Q44) WILD-TYPE     88     65    134
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       243                          88
  CLUS_2                       188                          65
  CLUS_3                       342                         134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED      157    118    235    109     50    104
  AMP PEAK  3(1Q44) WILD-TYPE     74     42     87     18     36     30
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       157                          74
  CLUS_2                       118                          42
  CLUS_3                       235                          87
  CLUS_4                       109                          18
  CLUS_5                        50                          36
  CLUS_6                       104                          30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      124    107     76     71     99
  AMP PEAK  3(1Q44) WILD-TYPE     56     32     23     40     34
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       124                          56
  CLUS_2                       107                          32
  CLUS_3                        76                          23
  CLUS_4                        71                          40
  CLUS_5                        99                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      212    189     76
  AMP PEAK  3(1Q44) WILD-TYPE     93     58     34
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       212                          93
  CLUS_2                       189                          58
  CLUS_3                        76                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED        6      7     34     20     18     25
  AMP PEAK  4(3P25.1) WILD-TYPE     15     29     85     76     91     47
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(3P25.1) MUTATED        7      1
  AMP PEAK  4(3P25.1) WILD-TYPE     13     39
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           7                            29
  CLUS_3                          34                            85
  CLUS_4                          20                            76
  CLUS_5                          18                            91
  CLUS_6                          25                            47
  CLUS_7                           7                            13
  CLUS_8                           1                            39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       27     18     42     18     13
  AMP PEAK  4(3P25.1) WILD-TYPE     74    134     72     70     45
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          18                           134
  CLUS_3                          42                            72
  CLUS_4                          18                            70
  CLUS_5                          13                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       75     19     23     69     12
  AMP PEAK  4(3P25.1) WILD-TYPE    185    393     70    196     37
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          75                           185
  CLUS_2                          19                           393
  CLUS_3                          23                            70
  CLUS_4                          69                           196
  CLUS_5                          12                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       34     19     38     10     14
  AMP PEAK  4(3P25.1) WILD-TYPE     98    178    139     78    114
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          34                            98
  CLUS_2                          19                           178
  CLUS_3                          38                           139
  CLUS_4                          10                            78
  CLUS_5                          14                           114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       42     29     23
  AMP PEAK  4(3P25.1) WILD-TYPE    107    103     94
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          42                           107
  CLUS_2                          29                           103
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       16     19     20     29     10
  AMP PEAK  4(3P25.1) WILD-TYPE     48     87     70     78     21
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          16                            48
  CLUS_2                          19                            87
  CLUS_3                          20                            70
  CLUS_4                          29                            78
  CLUS_5                          10                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED      110     77     10
  AMP PEAK  4(3P25.1) WILD-TYPE    433    221    222
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                         110                           433
  CLUS_2                          77                           221
  CLUS_3                          10                           222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       45     53     29     14     43     13
  AMP PEAK  4(3P25.1) WILD-TYPE    174    111    277    127    140     47
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          45                           174
  CLUS_2                          53                           111
  CLUS_3                          29                           277
  CLUS_4                          14                           127
  CLUS_5                          43                           140
  CLUS_6                          13                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       86     29     75
  AMP PEAK  4(3P25.1) WILD-TYPE    245    224    401
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          86                           245
  CLUS_2                          29                           224
  CLUS_3                          75                           401
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       58     38     28     22     11     33
  AMP PEAK  4(3P25.1) WILD-TYPE    173    122    294    105     75    101
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          58                           173
  CLUS_2                          38                           122
  CLUS_3                          28                           294
  CLUS_4                          22                           105
  CLUS_5                          11                            75
  CLUS_6                          33                           101
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       36     27     13      9     18
  AMP PEAK  4(3P25.1) WILD-TYPE    144    112     86    102    115
D4V11, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          36                           144
  CLUS_2                          27                           112
  CLUS_3                          13                            86
  CLUS_4                           9                           102
  CLUS_5                          18                           115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       58     33     12
  AMP PEAK  4(3P25.1) WILD-TYPE    247    214     98
D4V12, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          58                           247
  CLUS_2                          33                           214
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED        5     11     41     58     19     34
  AMP PEAK  5(3Q26.32) WILD-TYPE     16     25     78     38     90     38
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  5(3Q26.32) MUTATED        9      4
  AMP PEAK  5(3Q26.32) WILD-TYPE     11     36
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             25
  CLUS_3                           41                             78
  CLUS_4                           58                             38
  CLUS_5                           19                             90
  CLUS_6                           34                             38
  CLUS_7                            9                             11
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       29     29     57     53     13
  AMP PEAK  5(3Q26.32) WILD-TYPE     72    123     57     35     45
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           29                            123
  CLUS_3                           57                             57
  CLUS_4                           53                             35
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       99     37     29    161     14
  AMP PEAK  5(3Q26.32) WILD-TYPE    161    375     64    104     35
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           99                            161
  CLUS_2                           37                            375
  CLUS_3                           29                             64
  CLUS_4                          161                            104
  CLUS_5                           14                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       83     36     51     18     22
  AMP PEAK  5(3Q26.32) WILD-TYPE     49    161    126     70    106
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           83                             49
  CLUS_2                           36                            161
  CLUS_3                           51                            126
  CLUS_4                           18                             70
  CLUS_5                           22                            106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED       76     36     30
  AMP PEAK  5(3Q26.32) WILD-TYPE     73     96     87
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           76                             73
  CLUS_2                           36                             96
  CLUS_3                           30                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       22     26     54     30     10
  AMP PEAK  5(3Q26.32) WILD-TYPE     42     80     36     77     21
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           22                             42
  CLUS_2                           26                             80
  CLUS_3                           54                             36
  CLUS_4                           30                             77
  CLUS_5                           10                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED      151    165     21
  AMP PEAK  5(3Q26.32) WILD-TYPE    392    133    211
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          151                            392
  CLUS_2                          165                            133
  CLUS_3                           21                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       62     68     50     16    116     25
  AMP PEAK  5(3Q26.32) WILD-TYPE    157     96    256    125     67     35
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           62                            157
  CLUS_2                           68                             96
  CLUS_3                           50                            256
  CLUS_4                           16                            125
  CLUS_5                          116                             67
  CLUS_6                           25                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED      174     46    111
  AMP PEAK  5(3Q26.32) WILD-TYPE    157    207    365
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          174                            157
  CLUS_2                           46                            207
  CLUS_3                          111                            365
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       72     71     52     32     19     85
  AMP PEAK  5(3Q26.32) WILD-TYPE    159     89    270     95     67     49
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           72                            159
  CLUS_2                           71                             89
  CLUS_3                           52                            270
  CLUS_4                           32                             95
  CLUS_5                           19                             67
  CLUS_6                           85                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       52     77     14     21     29
  AMP PEAK  5(3Q26.32) WILD-TYPE    128     62     85     90    104
D5V11, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           52                            128
  CLUS_2                           77                             62
  CLUS_3                           14                             85
  CLUS_4                           21                             90
  CLUS_5                           29                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED      119     49     25
  AMP PEAK  5(3Q26.32) WILD-TYPE    186    198     85
D5V12, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          119                            186
  CLUS_2                           49                            198
  CLUS_3                           25                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED        4      3     32     18      3     18
  AMP PEAK  6(4Q13.3) WILD-TYPE     17     33     87     78    106     54
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  6(4Q13.3) MUTATED        4      3
  AMP PEAK  6(4Q13.3) WILD-TYPE     16     37
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          32                            87
  CLUS_4                          18                            78
  CLUS_5                           3                           106
  CLUS_6                          18                            54
  CLUS_7                           4                            16
  CLUS_8                           3                            37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       22     12     31     18      2
  AMP PEAK  6(4Q13.3) WILD-TYPE     79    140     83     70     56
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          22                            79
  CLUS_2                          12                           140
  CLUS_3                          31                            83
  CLUS_4                          18                            70
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       73     22      2     59      7
  AMP PEAK  6(4Q13.3) WILD-TYPE    187    390     91    206     42
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          73                           187
  CLUS_2                          22                           390
  CLUS_3                           2                            91
  CLUS_4                          59                           206
  CLUS_5                           7                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       32     16     37      5     11
  AMP PEAK  6(4Q13.3) WILD-TYPE    100    181    140     83    117
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          32                           100
  CLUS_2                          16                           181
  CLUS_3                          37                           140
  CLUS_4                           5                            83
  CLUS_5                          11                           117
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       32     15     17
  AMP PEAK  6(4Q13.3) WILD-TYPE    117    117    100
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          32                           117
  CLUS_2                          15                           117
  CLUS_3                          17                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED        5     12     16     25      6
  AMP PEAK  6(4Q13.3) WILD-TYPE     59     94     74     82     25
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                          12                            94
  CLUS_3                          16                            74
  CLUS_4                          25                            82
  CLUS_5                           6                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       83     68     12
  AMP PEAK  6(4Q13.3) WILD-TYPE    460    230    220
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          83                           460
  CLUS_2                          68                           230
  CLUS_3                          12                           220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       45     34     24      3     39     18
  AMP PEAK  6(4Q13.3) WILD-TYPE    174    130    282    138    144     42
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          45                           174
  CLUS_2                          34                           130
  CLUS_3                          24                           282
  CLUS_4                           3                           138
  CLUS_5                          39                           144
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       78     20     63
  AMP PEAK  6(4Q13.3) WILD-TYPE    253    233    413
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          78                           253
  CLUS_2                          20                           233
  CLUS_3                          63                           413
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       46     42     21     10     12     30
  AMP PEAK  6(4Q13.3) WILD-TYPE    185    118    301    117     74    104
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          46                           185
  CLUS_2                          42                           118
  CLUS_3                          21                           301
  CLUS_4                          10                           117
  CLUS_5                          12                            74
  CLUS_6                          30                           104
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       33     31      9      9     15
  AMP PEAK  6(4Q13.3) WILD-TYPE    147    108     90    102    118
D6V11, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          33                           147
  CLUS_2                          31                           108
  CLUS_3                           9                            90
  CLUS_4                           9                           102
  CLUS_5                          15                           118
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       65     22     10
  AMP PEAK  6(4Q13.3) WILD-TYPE    240    225    100
D6V12, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          65                           240
  CLUS_2                          22                           225
  CLUS_3                          10                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED        8     13     43     46     32     32
  AMP PEAK  7(5P15.33) WILD-TYPE     13     23     76     50     77     40
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  7(5P15.33) MUTATED       12      8
  AMP PEAK  7(5P15.33) WILD-TYPE      8     32
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           13                             23
  CLUS_3                           43                             76
  CLUS_4                           46                             50
  CLUS_5                           32                             77
  CLUS_6                           32                             40
  CLUS_7                           12                              8
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       34     44     59     40     17
  AMP PEAK  7(5P15.33) WILD-TYPE     67    108     55     48     41
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           34                             67
  CLUS_2                           44                            108
  CLUS_3                           59                             55
  CLUS_4                           40                             48
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED      123     65     50    137     18
  AMP PEAK  7(5P15.33) WILD-TYPE    137    347     43    128     31
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          123                            137
  CLUS_2                           65                            347
  CLUS_3                           50                             43
  CLUS_4                          137                            128
  CLUS_5                           18                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       69     55     76     25     30
  AMP PEAK  7(5P15.33) WILD-TYPE     63    142    101     63     98
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           69                             63
  CLUS_2                           55                            142
  CLUS_3                           76                            101
  CLUS_4                           25                             63
  CLUS_5                           30                             98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       70     44     42
  AMP PEAK  7(5P15.33) WILD-TYPE     79     88     75
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           70                             79
  CLUS_2                           44                             88
  CLUS_3                           42                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       25     34     38     45     14
  AMP PEAK  7(5P15.33) WILD-TYPE     39     72     52     62     17
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           34                             72
  CLUS_3                           38                             52
  CLUS_4                           45                             62
  CLUS_5                           14                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED      190    140     60
  AMP PEAK  7(5P15.33) WILD-TYPE    353    158    172
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          190                            353
  CLUS_2                          140                            158
  CLUS_3                           60                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       79     79     81     36     89     26
  AMP PEAK  7(5P15.33) WILD-TYPE    140     85    225    105     94     34
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           79                            140
  CLUS_2                           79                             85
  CLUS_3                           81                            225
  CLUS_4                           36                            105
  CLUS_5                           89                             94
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED      155     69    159
  AMP PEAK  7(5P15.33) WILD-TYPE    176    184    317
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          155                            176
  CLUS_2                           69                            184
  CLUS_3                          159                            317
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       85     70     81     52     31     64
  AMP PEAK  7(5P15.33) WILD-TYPE    146     90    241     75     55     70
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           85                            146
  CLUS_2                           70                             90
  CLUS_3                           81                            241
  CLUS_4                           52                             75
  CLUS_5                           31                             55
  CLUS_6                           64                             70
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       68     66     36     33     33
  AMP PEAK  7(5P15.33) WILD-TYPE    112     73     63     78    100
D7V11, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           68                            112
  CLUS_2                           66                             73
  CLUS_3                           36                             63
  CLUS_4                           33                             78
  CLUS_5                           33                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED      128     71     37
  AMP PEAK  7(5P15.33) WILD-TYPE    177    176     73
D7V12, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                          128                            177
  CLUS_2                           71                            176
  CLUS_3                           37                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6P23) MUTATED        3      7     30     49     18     28      9
  AMP PEAK  8(6P23) WILD-TYPE     18     29     89     47     91     44     11
                             vv
clus                          CLUS_8
  AMP PEAK  8(6P23) MUTATED        6
  AMP PEAK  8(6P23) WILD-TYPE     34
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                         3                          18
  CLUS_2                         7                          29
  CLUS_3                        30                          89
  CLUS_4                        49                          47
  CLUS_5                        18                          91
  CLUS_6                        28                          44
  CLUS_7                         9                          11
  CLUS_8                         6                          34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       22     28     48     45      7
  AMP PEAK  8(6P23) WILD-TYPE     79    124     66     43     51
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        22                          79
  CLUS_2                        28                         124
  CLUS_3                        48                          66
  CLUS_4                        45                          43
  CLUS_5                         7                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       84     29     22    147     16
  AMP PEAK  8(6P23) WILD-TYPE    176    383     71    118     33
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        84                         176
  CLUS_2                        29                         383
  CLUS_3                        22                          71
  CLUS_4                       147                         118
  CLUS_5                        16                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       74     29     59      7     23
  AMP PEAK  8(6P23) WILD-TYPE     58    168    118     81    105
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        74                          58
  CLUS_2                        29                         168
  CLUS_3                        59                         118
  CLUS_4                         7                          81
  CLUS_5                        23                         105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED       68     24     24
  AMP PEAK  8(6P23) WILD-TYPE     81    108     93
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        68                          81
  CLUS_2                        24                         108
  CLUS_3                        24                          93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       14     21     46     27      8
  AMP PEAK  8(6P23) WILD-TYPE     50     85     44     80     23
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                        21                          85
  CLUS_3                        46                          44
  CLUS_4                        27                          80
  CLUS_5                         8                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED      132    142     23
  AMP PEAK  8(6P23) WILD-TYPE    411    156    209
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       132                         411
  CLUS_2                       142                         156
  CLUS_3                        23                         209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       46     71     50     15     97     18
  AMP PEAK  8(6P23) WILD-TYPE    173     93    256    126     86     42
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        46                         173
  CLUS_2                        71                          93
  CLUS_3                        50                         256
  CLUS_4                        15                         126
  CLUS_5                        97                          86
  CLUS_6                        18                          42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED      159     34     93
  AMP PEAK  8(6P23) WILD-TYPE    172    219    383
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       159                         172
  CLUS_2                        34                         219
  CLUS_3                        93                         383
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       73     63     35     26     17     72
  AMP PEAK  8(6P23) WILD-TYPE    158     97    287    101     69     62
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        73                         158
  CLUS_2                        63                          97
  CLUS_3                        35                         287
  CLUS_4                        26                         101
  CLUS_5                        17                          69
  CLUS_6                        72                          62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       42     67     21     12     24
  AMP PEAK  8(6P23) WILD-TYPE    138     72     78     99    109
D8V11, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        42                         138
  CLUS_2                        67                          72
  CLUS_3                        21                          78
  CLUS_4                        12                          99
  CLUS_5                        24                         109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED      110     44     12
  AMP PEAK  8(6P23) WILD-TYPE    195    203     98
D8V12, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       110                         195
  CLUS_2                        44                         203
  CLUS_3                        12                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  9(6Q21) MUTATED        4      1     11     42     11     24      9
  AMP PEAK  9(6Q21) WILD-TYPE     17     35    108     54     98     48     11
                             vv
clus                          CLUS_8
  AMP PEAK  9(6Q21) MUTATED        2
  AMP PEAK  9(6Q21) WILD-TYPE     38
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         4                          17
  CLUS_2                         1                          35
  CLUS_3                        11                         108
  CLUS_4                        42                          54
  CLUS_5                        11                          98
  CLUS_6                        24                          48
  CLUS_7                         9                          11
  CLUS_8                         2                          38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       10     14     39     37      4
  AMP PEAK  9(6Q21) WILD-TYPE     91    138     75     51     54
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        10                          91
  CLUS_2                        14                         138
  CLUS_3                        39                          75
  CLUS_4                        37                          51
  CLUS_5                         4                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       23     25     17    130      6
  AMP PEAK  9(6Q21) WILD-TYPE    237    387     76    135     43
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        23                         237
  CLUS_2                        25                         387
  CLUS_3                        17                          76
  CLUS_4                       130                         135
  CLUS_5                         6                          43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       61      9     31      6     20
  AMP PEAK  9(6Q21) WILD-TYPE     71    188    146     82    108
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        61                          71
  CLUS_2                         9                         188
  CLUS_3                        31                         146
  CLUS_4                         6                          82
  CLUS_5                        20                         108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       55     11     16
  AMP PEAK  9(6Q21) WILD-TYPE     94    121    101
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        55                          94
  CLUS_2                        11                         121
  CLUS_3                        16                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        6     15     38     16      7
  AMP PEAK  9(6Q21) WILD-TYPE     58     91     52     91     24
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         6                          58
  CLUS_2                        15                          91
  CLUS_3                        38                          52
  CLUS_4                        16                          91
  CLUS_5                         7                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       67    123     10
  AMP PEAK  9(6Q21) WILD-TYPE    476    175    222
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        67                         476
  CLUS_2                       123                         175
  CLUS_3                        10                         222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       22     47     22      7     82     20
  AMP PEAK  9(6Q21) WILD-TYPE    197    117    284    134    101     40
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        22                         197
  CLUS_2                        47                         117
  CLUS_3                        22                         284
  CLUS_4                         7                         134
  CLUS_5                        82                         101
  CLUS_6                        20                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED      129     20     42
  AMP PEAK  9(6Q21) WILD-TYPE    202    233    434
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                       129                         202
  CLUS_2                        20                         233
  CLUS_3                        42                         434
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       44     58     14     14      3     58
  AMP PEAK  9(6Q21) WILD-TYPE    187    102    308    113     83     76
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        44                         187
  CLUS_2                        58                         102
  CLUS_3                        14                         308
  CLUS_4                        14                         113
  CLUS_5                         3                          83
  CLUS_6                        58                          76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       21     68      8      7     16
  AMP PEAK  9(6Q21) WILD-TYPE    159     71     91    104    117
D9V11, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        21                         159
  CLUS_2                        68                          71
  CLUS_3                         8                          91
  CLUS_4                         7                         104
  CLUS_5                        16                         117
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       85     26      9
  AMP PEAK  9(6Q21) WILD-TYPE    220    221    101
D9V12, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        85                         220
  CLUS_2                        26                         221
  CLUS_3                         9                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       11     18     74     33     36     23
  AMP PEAK 10(8P11.23) WILD-TYPE     10     18     45     63     73     49
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 10(8P11.23) MUTATED        5      9
  AMP PEAK 10(8P11.23) WILD-TYPE     15     31
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           18                             18
  CLUS_3                           74                             45
  CLUS_4                           33                             63
  CLUS_5                           36                             73
  CLUS_6                           23                             49
  CLUS_7                            5                             15
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       64     62     41     30     12
  AMP PEAK 10(8P11.23) WILD-TYPE     37     90     73     58     46
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           62                             90
  CLUS_3                           41                             73
  CLUS_4                           30                             58
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED      133    112     37     81     48
  AMP PEAK 10(8P11.23) WILD-TYPE    127    300     56    184      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          133                            127
  CLUS_2                          112                            300
  CLUS_3                           37                             56
  CLUS_4                           81                            184
  CLUS_5                           48                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       47     66     92     32     35
  AMP PEAK 10(8P11.23) WILD-TYPE     85    131     85     56     93
D10V4, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           47                             85
  CLUS_2                           66                            131
  CLUS_3                           92                             85
  CLUS_4                           32                             56
  CLUS_5                           35                             93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       52     53     58
  AMP PEAK 10(8P11.23) WILD-TYPE     97     79     59
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           52                             97
  CLUS_2                           53                             79
  CLUS_3                           58                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       28     47     32     54      2
  AMP PEAK 10(8P11.23) WILD-TYPE     36     59     58     53     29
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           28                             36
  CLUS_2                           47                             59
  CLUS_3                           32                             58
  CLUS_4                           54                             53
  CLUS_5                            2                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED      246     95     66
  AMP PEAK 10(8P11.23) WILD-TYPE    297    203    166
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          246                            297
  CLUS_2                           95                            203
  CLUS_3                           66                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED      132     73     98     31     59     14
  AMP PEAK 10(8P11.23) WILD-TYPE     87     91    208    110    124     46
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          132                             87
  CLUS_2                           73                             91
  CLUS_3                           98                            208
  CLUS_4                           31                            110
  CLUS_5                           59                            124
  CLUS_6                           14                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED      126     90    189
  AMP PEAK 10(8P11.23) WILD-TYPE    205    163    287
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          126                            205
  CLUS_2                           90                            163
  CLUS_3                          189                            287
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED      102     55    111     52     39     46
  AMP PEAK 10(8P11.23) WILD-TYPE    129    105    211     75     47     88
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          102                            129
  CLUS_2                           55                            105
  CLUS_3                          111                            211
  CLUS_4                           52                             75
  CLUS_5                           39                             47
  CLUS_6                           46                             88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       79     51     36     36     42
  AMP PEAK 10(8P11.23) WILD-TYPE    101     88     63     75     91
D10V11, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           79                            101
  CLUS_2                           51                             88
  CLUS_3                           36                             63
  CLUS_4                           36                             75
  CLUS_5                           42                             91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED      117     87     40
  AMP PEAK 10(8P11.23) WILD-TYPE    188    160     70
D10V12, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          117                            188
  CLUS_2                           87                            160
  CLUS_3                           40                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       11     13     60     44     39     27
  AMP PEAK 11(8P11.21) WILD-TYPE     10     23     59     52     70     45
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(8P11.21) MUTATED        7      9
  AMP PEAK 11(8P11.21) WILD-TYPE     13     31
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           13                             23
  CLUS_3                           60                             59
  CLUS_4                           44                             52
  CLUS_5                           39                             70
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       54     57     45     40     14
  AMP PEAK 11(8P11.21) WILD-TYPE     47     95     69     48     44
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           54                             47
  CLUS_2                           57                             95
  CLUS_3                           45                             69
  CLUS_4                           40                             48
  CLUS_5                           14                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED      119    105     41    106     49
  AMP PEAK 11(8P11.21) WILD-TYPE    141    307     52    159      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          119                            141
  CLUS_2                          105                            307
  CLUS_3                           41                             52
  CLUS_4                          106                            159
  CLUS_5                           49                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       71     65     81     28     38
  AMP PEAK 11(8P11.21) WILD-TYPE     61    132     96     60     90
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           71                             61
  CLUS_2                           65                            132
  CLUS_3                           81                             96
  CLUS_4                           28                             60
  CLUS_5                           38                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED       58     55     48
  AMP PEAK 11(8P11.21) WILD-TYPE     91     77     69
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           58                             91
  CLUS_2                           55                             77
  CLUS_3                           48                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       29     39     41     46      6
  AMP PEAK 11(8P11.21) WILD-TYPE     35     67     49     61     25
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           39                             67
  CLUS_3                           41                             49
  CLUS_4                           46                             61
  CLUS_5                            6                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED      226    133     57
  AMP PEAK 11(8P11.21) WILD-TYPE    317    165    175
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          226                            317
  CLUS_2                          133                            165
  CLUS_3                           57                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED      119     71     86     31     93     16
  AMP PEAK 11(8P11.21) WILD-TYPE    100     93    220    110     90     44
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          119                            100
  CLUS_2                           71                             93
  CLUS_3                           86                            220
  CLUS_4                           31                            110
  CLUS_5                           93                             90
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED      153     81    177
  AMP PEAK 11(8P11.21) WILD-TYPE    178    172    299
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          153                            178
  CLUS_2                           81                            172
  CLUS_3                          177                            299
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       96     53     96     52     41     73
  AMP PEAK 11(8P11.21) WILD-TYPE    135    107    226     75     45     61
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           96                            135
  CLUS_2                           53                            107
  CLUS_3                           96                            226
  CLUS_4                           52                             75
  CLUS_5                           41                             45
  CLUS_6                           73                             61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       68     74     31     29     41
  AMP PEAK 11(8P11.21) WILD-TYPE    112     65     68     82     92
D11V11, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           68                            112
  CLUS_2                           74                             65
  CLUS_3                           31                             68
  CLUS_4                           29                             82
  CLUS_5                           41                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED      134     80     29
  AMP PEAK 11(8P11.21) WILD-TYPE    171    167     81
D11V12, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          134                            171
  CLUS_2                           80                            167
  CLUS_3                           29                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       17     20     96     83     46     56
  AMP PEAK 12(8Q24.21) WILD-TYPE      4     16     23     13     63     16
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(8Q24.21) MUTATED       17     15
  AMP PEAK 12(8Q24.21) WILD-TYPE      3     25
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           17                              4
  CLUS_2                           20                             16
  CLUS_3                           96                             23
  CLUS_4                           83                             13
  CLUS_5                           46                             63
  CLUS_6                           56                             16
  CLUS_7                           17                              3
  CLUS_8                           15                             25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       84     83     92     75     16
  AMP PEAK 12(8Q24.21) WILD-TYPE     17     69     22     13     42
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           84                             17
  CLUS_2                           83                             69
  CLUS_3                           92                             22
  CLUS_4                           75                             13
  CLUS_5                           16                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      200    147     43    240     47
  AMP PEAK 12(8Q24.21) WILD-TYPE     60    265     50     25      2
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          200                             60
  CLUS_2                          147                            265
  CLUS_3                           43                             50
  CLUS_4                          240                             25
  CLUS_5                           47                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      120     82    125     39     68
  AMP PEAK 12(8Q24.21) WILD-TYPE     12    115     52     49     60
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          120                             12
  CLUS_2                           82                            115
  CLUS_3                          125                             52
  CLUS_4                           39                             49
  CLUS_5                           68                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      126     71     76
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     61     41
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          126                             23
  CLUS_2                           71                             61
  CLUS_3                           76                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       34     57     78     79     25
  AMP PEAK 12(8Q24.21) WILD-TYPE     30     49     12     28      6
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           34                             30
  CLUS_2                           57                             49
  CLUS_3                           78                             12
  CLUS_4                           79                             28
  CLUS_5                           25                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      338    250     85
  AMP PEAK 12(8Q24.21) WILD-TYPE    205     48    147
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          338                            205
  CLUS_2                          250                             48
  CLUS_3                           85                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      168    126    140     33    162     44
  AMP PEAK 12(8Q24.21) WILD-TYPE     51     38    166    108     21     16
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          168                             51
  CLUS_2                          126                             38
  CLUS_3                          140                            166
  CLUS_4                           33                            108
  CLUS_5                          162                             21
  CLUS_6                           44                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      291    111    260
  AMP PEAK 12(8Q24.21) WILD-TYPE     40    142    216
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          291                             40
  CLUS_2                          111                            142
  CLUS_3                          260                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      162    124    125     77     52    122
  AMP PEAK 12(8Q24.21) WILD-TYPE     69     36    197     50     34     12
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          162                             69
  CLUS_2                          124                             36
  CLUS_3                          125                            197
  CLUS_4                           77                             50
  CLUS_5                           52                             34
  CLUS_6                          122                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      114    128     41     44     65
  AMP PEAK 12(8Q24.21) WILD-TYPE     66     11     58     67     68
D12V11, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          114                             66
  CLUS_2                          128                             11
  CLUS_3                           41                             58
  CLUS_4                           44                             67
  CLUS_5                           65                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      224    116     52
  AMP PEAK 12(8Q24.21) WILD-TYPE     81    131     58
D12V12, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          224                             81
  CLUS_2                          116                            131
  CLUS_3                           52                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED        6      4     26     67     12     33
  AMP PEAK 13(10P15.1) WILD-TYPE     15     32     93     29     97     39
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(10P15.1) MUTATED        6      7
  AMP PEAK 13(10P15.1) WILD-TYPE     14     33
D13V1, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            4                             32
  CLUS_3                           26                             93
  CLUS_4                           67                             29
  CLUS_5                           12                             97
  CLUS_6                           33                             39
  CLUS_7                            6                             14
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       16     22     53     63      7
  AMP PEAK 13(10P15.1) WILD-TYPE     85    130     61     25     51
D13V2, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           22                            130
  CLUS_3                           53                             61
  CLUS_4                           63                             25
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       72     38     16    168     10
  AMP PEAK 13(10P15.1) WILD-TYPE    188    374     77     97     39
D13V3, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           72                            188
  CLUS_2                           38                            374
  CLUS_3                           16                             77
  CLUS_4                          168                             97
  CLUS_5                           10                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       88     16     45      9     31
  AMP PEAK 13(10P15.1) WILD-TYPE     44    181    132     79     97
D13V4, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           88                             44
  CLUS_2                           16                            181
  CLUS_3                           45                            132
  CLUS_4                            9                             79
  CLUS_5                           31                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED       78     22     29
  AMP PEAK 13(10P15.1) WILD-TYPE     71    110     88
D13V5, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           78                             71
  CLUS_2                           22                            110
  CLUS_3                           29                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED        8     24     61     27      9
  AMP PEAK 13(10P15.1) WILD-TYPE     56     82     29     80     22
D13V6, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                           24                             82
  CLUS_3                           61                             29
  CLUS_4                           27                             80
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED      106    172     26
  AMP PEAK 13(10P15.1) WILD-TYPE    437    126    206
D13V7, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          106                            437
  CLUS_2                          172                            126
  CLUS_3                           26                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED       48     56     43      6    125     26
  AMP PEAK 13(10P15.1) WILD-TYPE    171    108    263    135     58     34
D13V8, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           48                            171
  CLUS_2                           56                            108
  CLUS_3                           43                            263
  CLUS_4                            6                            135
  CLUS_5                          125                             58
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED      180     33     83
  AMP PEAK 13(10P15.1) WILD-TYPE    151    220    393
D13V9, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          180                            151
  CLUS_2                           33                            220
  CLUS_3                           83                            393
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED       67     75     31     25      8     90
  AMP PEAK 13(10P15.1) WILD-TYPE    164     85    291    102     78     44
D13V10, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           67                            164
  CLUS_2                           75                             85
  CLUS_3                           31                            291
  CLUS_4                           25                            102
  CLUS_5                            8                             78
  CLUS_6                           90                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       35     89     16     11     25
  AMP PEAK 13(10P15.1) WILD-TYPE    145     50     83    100    108
D13V11, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           35                            145
  CLUS_2                           89                             50
  CLUS_3                           16                             83
  CLUS_4                           11                            100
  CLUS_5                           25                            108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED      126     36     14
  AMP PEAK 13(10P15.1) WILD-TYPE    179    211     96
D13V12, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          126                            179
  CLUS_2                           36                            211
  CLUS_3                           14                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED        6      3     16     18      9     23
  AMP PEAK 14(10Q22.3) WILD-TYPE     15     33    103     78    100     49
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 14(10Q22.3) MUTATED        8      3
  AMP PEAK 14(10Q22.3) WILD-TYPE     12     37
D14V1, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            3                             33
  CLUS_3                           16                            103
  CLUS_4                           18                             78
  CLUS_5                            9                            100
  CLUS_6                           23                             49
  CLUS_7                            8                             12
  CLUS_8                            3                             37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       11     17     36     17      5
  AMP PEAK 14(10Q22.3) WILD-TYPE     90    135     78     71     53
D14V2, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           11                             90
  CLUS_2                           17                            135
  CLUS_3                           36                             78
  CLUS_4                           17                             71
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       42     24     11     67      6
  AMP PEAK 14(10Q22.3) WILD-TYPE    218    388     82    198     43
D14V3, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           42                            218
  CLUS_2                           24                            388
  CLUS_3                           11                             82
  CLUS_4                           67                            198
  CLUS_5                            6                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       29     15     26      8     13
  AMP PEAK 14(10Q22.3) WILD-TYPE    103    182    151     80    115
D14V4, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           29                            103
  CLUS_2                           15                            182
  CLUS_3                           26                            151
  CLUS_4                            8                             80
  CLUS_5                           13                            115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       38     14     19
  AMP PEAK 14(10Q22.3) WILD-TYPE    111    118     98
D14V5, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           38                            111
  CLUS_2                           14                            118
  CLUS_3                           19                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED        9     17     21     17      7
  AMP PEAK 14(10Q22.3) WILD-TYPE     55     89     69     90     24
D14V6, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           17                             89
  CLUS_3                           21                             69
  CLUS_4                           17                             90
  CLUS_5                            7                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       69     67     14
  AMP PEAK 14(10Q22.3) WILD-TYPE    474    231    218
D14V7, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           69                            474
  CLUS_2                           67                            231
  CLUS_3                           14                            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       30     36     31      4     32     17
  AMP PEAK 14(10Q22.3) WILD-TYPE    189    128    275    137    151     43
D14V8, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           30                            189
  CLUS_2                           36                            128
  CLUS_3                           31                            275
  CLUS_4                            4                            137
  CLUS_5                           32                            151
  CLUS_6                           17                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       69     18     59
  AMP PEAK 14(10Q22.3) WILD-TYPE    262    235    417
D14V9, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           69                            262
  CLUS_2                           18                            235
  CLUS_3                           59                            417
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       45     33     18     20      6     24
  AMP PEAK 14(10Q22.3) WILD-TYPE    186    127    304    107     80    110
D14V10, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           45                            186
  CLUS_2                           33                            127
  CLUS_3                           18                            304
  CLUS_4                           20                            107
  CLUS_5                            6                             80
  CLUS_6                           24                            110
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       28     30      7      9     11
  AMP PEAK 14(10Q22.3) WILD-TYPE    152    109     92    102    122
D14V11, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           28                            152
  CLUS_2                           30                            109
  CLUS_3                            7                             92
  CLUS_4                            9                            102
  CLUS_5                           11                            122
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       51     18     16
  AMP PEAK 14(10Q22.3) WILD-TYPE    254    229     94
D14V12, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           51                            254
  CLUS_2                           18                            229
  CLUS_3                           16                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(11P13) MUTATED        5      8     33     27     15     18      5
  AMP PEAK 15(11P13) WILD-TYPE     16     28     86     69     94     54     15
                              vv
clus                           CLUS_8
  AMP PEAK 15(11P13) MUTATED        6
  AMP PEAK 15(11P13) WILD-TYPE     34
D15V1, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                          5                           16
  CLUS_2                          8                           28
  CLUS_3                         33                           86
  CLUS_4                         27                           69
  CLUS_5                         15                           94
  CLUS_6                         18                           54
  CLUS_7                          5                           15
  CLUS_8                          6                           34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       28     26     34     25      4
  AMP PEAK 15(11P13) WILD-TYPE     73    126     80     63     54
D15V2, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         28                           73
  CLUS_2                         26                          126
  CLUS_3                         34                           80
  CLUS_4                         25                           63
  CLUS_5                          4                           54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       80     30     16     88      8
  AMP PEAK 15(11P13) WILD-TYPE    180    382     77    177     41
D15V3, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         80                          180
  CLUS_2                         30                          382
  CLUS_3                         16                           77
  CLUS_4                         88                          177
  CLUS_5                          8                           41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       42     37     35     11     20
  AMP PEAK 15(11P13) WILD-TYPE     90    160    142     77    108
D15V4, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         42                           90
  CLUS_2                         37                          160
  CLUS_3                         35                          142
  CLUS_4                         11                           77
  CLUS_5                         20                          108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       45     24     27
  AMP PEAK 15(11P13) WILD-TYPE    104    108     90
D15V5, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         45                          104
  CLUS_2                         24                          108
  CLUS_3                         27                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED        7     25     28     28      8
  AMP PEAK 15(11P13) WILD-TYPE     57     81     62     79     23
D15V6, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                          7                           57
  CLUS_2                         25                           81
  CLUS_3                         28                           62
  CLUS_4                         28                           79
  CLUS_5                          8                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED      114     87     21
  AMP PEAK 15(11P13) WILD-TYPE    429    211    211
D15V7, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                        114                          429
  CLUS_2                         87                          211
  CLUS_3                         21                          211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       53     44     47      9     59     10
  AMP PEAK 15(11P13) WILD-TYPE    166    120    259    132    124     50
D15V8, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         53                          166
  CLUS_2                         44                          120
  CLUS_3                         47                          259
  CLUS_4                          9                          132
  CLUS_5                         59                          124
  CLUS_6                         10                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED      102     23     94
  AMP PEAK 15(11P13) WILD-TYPE    229    230    382
D15V9, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                        102                          229
  CLUS_2                         23                          230
  CLUS_3                         94                          382
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       61     53     35     19     13     38
  AMP PEAK 15(11P13) WILD-TYPE    170    107    287    108     73     96
D15V10, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         61                          170
  CLUS_2                         53                          107
  CLUS_3                         35                          287
  CLUS_4                         19                          108
  CLUS_5                         13                           73
  CLUS_6                         38                           96
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       41     42     12     16     14
  AMP PEAK 15(11P13) WILD-TYPE    139     97     87     95    119
D15V11, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         41                          139
  CLUS_2                         42                           97
  CLUS_3                         12                           87
  CLUS_4                         16                           95
  CLUS_5                         14                          119
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       79     29     17
  AMP PEAK 15(11P13) WILD-TYPE    226    218     93
D15V12, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         79                          226
  CLUS_2                         29                          218
  CLUS_3                         17                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       13     18     62     28     33     37
  AMP PEAK 16(11Q13.3) WILD-TYPE      8     18     57     68     76     35
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 16(11Q13.3) MUTATED       11     13
  AMP PEAK 16(11Q13.3) WILD-TYPE      9     27
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           13                              8
  CLUS_2                           18                             18
  CLUS_3                           62                             57
  CLUS_4                           28                             68
  CLUS_5                           33                             76
  CLUS_6                           37                             35
  CLUS_7                           11                              9
  CLUS_8                           13                             27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       55     57     68     24     11
  AMP PEAK 16(11Q13.3) WILD-TYPE     46     95     46     64     47
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           55                             46
  CLUS_2                           57                             95
  CLUS_3                           68                             46
  CLUS_4                           24                             64
  CLUS_5                           11                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED      183     67     28    101     18
  AMP PEAK 16(11Q13.3) WILD-TYPE     77    345     65    164     31
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          183                             77
  CLUS_2                           67                            345
  CLUS_3                           28                             65
  CLUS_4                          101                            164
  CLUS_5                           18                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       48     60     95     22     25
  AMP PEAK 16(11Q13.3) WILD-TYPE     84    137     82     66    103
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           48                             84
  CLUS_2                           60                            137
  CLUS_3                           95                             82
  CLUS_4                           22                             66
  CLUS_5                           25                            103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       62     56     50
  AMP PEAK 16(11Q13.3) WILD-TYPE     87     76     67
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           62                             87
  CLUS_2                           56                             76
  CLUS_3                           50                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       17     49     29     60     13
  AMP PEAK 16(11Q13.3) WILD-TYPE     47     57     61     47     18
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           49                             57
  CLUS_3                           29                             61
  CLUS_4                           60                             47
  CLUS_5                           13                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED      228    109     60
  AMP PEAK 16(11Q13.3) WILD-TYPE    315    189    172
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          228                            315
  CLUS_2                          109                            189
  CLUS_3                           60                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED      112     83    100     24     58     20
  AMP PEAK 16(11Q13.3) WILD-TYPE    107     81    206    117    125     40
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          112                            107
  CLUS_2                           83                             81
  CLUS_3                          100                            206
  CLUS_4                           24                            117
  CLUS_5                           58                            125
  CLUS_6                           20                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED      136     70    183
  AMP PEAK 16(11Q13.3) WILD-TYPE    195    183    293
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          136                            195
  CLUS_2                           70                            183
  CLUS_3                          183                            293
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED      104     66     97     50     30     42
  AMP PEAK 16(11Q13.3) WILD-TYPE    127     94    225     77     56     92
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          104                            127
  CLUS_2                           66                             94
  CLUS_3                           97                            225
  CLUS_4                           50                             77
  CLUS_5                           30                             56
  CLUS_6                           42                             92
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       76     48     29     26     49
  AMP PEAK 16(11Q13.3) WILD-TYPE    104     91     70     85     84
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           76                            104
  CLUS_2                           48                             91
  CLUS_3                           29                             70
  CLUS_4                           26                             85
  CLUS_5                           49                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED      123     77     28
  AMP PEAK 16(11Q13.3) WILD-TYPE    182    170     82
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                          123                            182
  CLUS_2                           77                            170
  CLUS_3                           28                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       11     11     32     33     23     25
  AMP PEAK 17(11Q14.1) WILD-TYPE     10     25     87     63     86     47
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 17(11Q14.1) MUTATED        7      4
  AMP PEAK 17(11Q14.1) WILD-TYPE     13     36
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           11                             25
  CLUS_3                           32                             87
  CLUS_4                           33                             63
  CLUS_5                           23                             86
  CLUS_6                           25                             47
  CLUS_7                            7                             13
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       30     36     45     30      5
  AMP PEAK 17(11Q14.1) WILD-TYPE     71    116     69     58     53
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           36                            116
  CLUS_3                           45                             69
  CLUS_4                           30                             58
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED      102     38     19     97     10
  AMP PEAK 17(11Q14.1) WILD-TYPE    158    374     74    168     39
D17V3, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                          102                            158
  CLUS_2                           38                            374
  CLUS_3                           19                             74
  CLUS_4                           97                            168
  CLUS_5                           10                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       43     32     52     18     16
  AMP PEAK 17(11Q14.1) WILD-TYPE     89    165    125     70    112
D17V4, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           43                             89
  CLUS_2                           32                            165
  CLUS_3                           52                            125
  CLUS_4                           18                             70
  CLUS_5                           16                            112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       52     30     34
  AMP PEAK 17(11Q14.1) WILD-TYPE     97    102     83
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           52                             97
  CLUS_2                           30                            102
  CLUS_3                           34                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       13     31     31     29     12
  AMP PEAK 17(11Q14.1) WILD-TYPE     51     75     59     78     19
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           31                             75
  CLUS_3                           31                             59
  CLUS_4                           29                             78
  CLUS_5                           12                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED      133     99     34
  AMP PEAK 17(11Q14.1) WILD-TYPE    410    199    198
D17V7, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                          133                            410
  CLUS_2                           99                            199
  CLUS_3                           34                            198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       55     56     60     17     61     17
  AMP PEAK 17(11Q14.1) WILD-TYPE    164    108    246    124    122     43
D17V8, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           55                            164
  CLUS_2                           56                            108
  CLUS_3                           60                            246
  CLUS_4                           17                            124
  CLUS_5                           61                            122
  CLUS_6                           17                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED      116     38    106
  AMP PEAK 17(11Q14.1) WILD-TYPE    215    215    370
D17V9, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                          116                            215
  CLUS_2                           38                            215
  CLUS_3                          106                            370
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       62     50     56     28     17     47
  AMP PEAK 17(11Q14.1) WILD-TYPE    169    110    266     99     69     87
D17V10, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           62                            169
  CLUS_2                           50                            110
  CLUS_3                           56                            266
  CLUS_4                           28                             99
  CLUS_5                           17                             69
  CLUS_6                           47                             87
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       44     41     21     15     25
  AMP PEAK 17(11Q14.1) WILD-TYPE    136     98     78     96    108
D17V11, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           44                            136
  CLUS_2                           41                             98
  CLUS_3                           21                             78
  CLUS_4                           15                             96
  CLUS_5                           25                            108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       82     42     22
  AMP PEAK 17(11Q14.1) WILD-TYPE    223    205     88
D17V12, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           82                            223
  CLUS_2                           42                            205
  CLUS_3                           22                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED        3      4     36     53     18     29
  AMP PEAK 18(12P13.33) WILD-TYPE     18     32     83     43     91     43
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 18(12P13.33) MUTATED        3      3
  AMP PEAK 18(12P13.33) WILD-TYPE     17     37
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                             3                              18
  CLUS_2                             4                              32
  CLUS_3                            36                              83
  CLUS_4                            53                              43
  CLUS_5                            18                              91
  CLUS_6                            29                              43
  CLUS_7                             3                              17
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       30     16     44     49     10
  AMP PEAK 18(12P13.33) WILD-TYPE     71    136     70     39     48
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            30                              71
  CLUS_2                            16                             136
  CLUS_3                            44                              70
  CLUS_4                            49                              39
  CLUS_5                            10                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       84     22     27    135     13
  AMP PEAK 18(12P13.33) WILD-TYPE    176    390     66    130     36
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            84                             176
  CLUS_2                            22                             390
  CLUS_3                            27                              66
  CLUS_4                           135                             130
  CLUS_5                            13                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       71     36     44     10     16
  AMP PEAK 18(12P13.33) WILD-TYPE     61    161    133     78    112
D18V4, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            71                              61
  CLUS_2                            36                             161
  CLUS_3                            44                             133
  CLUS_4                            10                              78
  CLUS_5                            16                             112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       71     30     19
  AMP PEAK 18(12P13.33) WILD-TYPE     78    102     98
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            71                              78
  CLUS_2                            30                             102
  CLUS_3                            19                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       15     15     47     33     10
  AMP PEAK 18(12P13.33) WILD-TYPE     49     91     43     74     21
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                            15                              91
  CLUS_3                            47                              43
  CLUS_4                            33                              74
  CLUS_5                            10                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED      126    135     20
  AMP PEAK 18(12P13.33) WILD-TYPE    417    163    212
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                           126                             417
  CLUS_2                           135                             163
  CLUS_3                            20                             212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       57     58     38     12    102     14
  AMP PEAK 18(12P13.33) WILD-TYPE    162    106    268    129     81     46
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            57                             162
  CLUS_2                            58                             106
  CLUS_3                            38                             268
  CLUS_4                            12                             129
  CLUS_5                           102                              81
  CLUS_6                            14                              46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED      153     34     85
  AMP PEAK 18(12P13.33) WILD-TYPE    178    219    391
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                           153                             178
  CLUS_2                            34                             219
  CLUS_3                            85                             391
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       63     49     41     29     13     77
  AMP PEAK 18(12P13.33) WILD-TYPE    168    111    281     98     73     57
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            63                             168
  CLUS_2                            49                             111
  CLUS_3                            41                             281
  CLUS_4                            29                              98
  CLUS_5                            13                              73
  CLUS_6                            77                              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       39     68     15     12     24
  AMP PEAK 18(12P13.33) WILD-TYPE    141     71     84     99    109
D18V11, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            39                             141
  CLUS_2                            68                              71
  CLUS_3                            15                              84
  CLUS_4                            12                              99
  CLUS_5                            24                             109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       99     44     15
  AMP PEAK 18(12P13.33) WILD-TYPE    206    203     95
D18V12, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            99                             206
  CLUS_2                            44                             203
  CLUS_3                            15                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(12Q15) MUTATED        4      6     54     21     20     35      7
  AMP PEAK 19(12Q15) WILD-TYPE     17     30     65     75     89     37     13
                              vv
clus                           CLUS_8
  AMP PEAK 19(12Q15) MUTATED        6
  AMP PEAK 19(12Q15) WILD-TYPE     34
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          4                           17
  CLUS_2                          6                           30
  CLUS_3                         54                           65
  CLUS_4                         21                           75
  CLUS_5                         20                           89
  CLUS_6                         35                           37
  CLUS_7                          7                           13
  CLUS_8                          6                           34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       43     24     56     18     12
  AMP PEAK 19(12Q15) WILD-TYPE     58    128     58     70     46
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         43                           58
  CLUS_2                         24                          128
  CLUS_3                         56                           58
  CLUS_4                         18                           70
  CLUS_5                         12                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED      133     31     29     70     12
  AMP PEAK 19(12Q15) WILD-TYPE    127    381     64    195     37
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        133                          127
  CLUS_2                         31                          381
  CLUS_3                         29                           64
  CLUS_4                         70                          195
  CLUS_5                         12                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       24     50     61     13     20
  AMP PEAK 19(12Q15) WILD-TYPE    108    147    116     75    108
D19V4, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         24                          108
  CLUS_2                         50                          147
  CLUS_3                         61                          116
  CLUS_4                         13                           75
  CLUS_5                         20                          108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       53     41     31
  AMP PEAK 19(12Q15) WILD-TYPE     96     91     86
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         53                           96
  CLUS_2                         41                           91
  CLUS_3                         31                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       17     24     24     48     12
  AMP PEAK 19(12Q15) WILD-TYPE     47     82     66     59     19
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         17                           47
  CLUS_2                         24                           82
  CLUS_3                         24                           66
  CLUS_4                         48                           59
  CLUS_5                         12                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED      183     62     29
  AMP PEAK 19(12Q15) WILD-TYPE    360    236    203
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        183                          360
  CLUS_2                         62                          236
  CLUS_3                         29                          203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       81     79     52     20     30     12
  AMP PEAK 19(12Q15) WILD-TYPE    138     85    254    121    153     48
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         81                          138
  CLUS_2                         79                           85
  CLUS_3                         52                          254
  CLUS_4                         20                          121
  CLUS_5                         30                          153
  CLUS_6                         12                           48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       98     39    132
  AMP PEAK 19(12Q15) WILD-TYPE    233    214    344
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         98                          233
  CLUS_2                         39                          214
  CLUS_3                        132                          344
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       93     43     57     32     22     22
  AMP PEAK 19(12Q15) WILD-TYPE    138    117    265     95     64    112
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         93                          138
  CLUS_2                         43                          117
  CLUS_3                         57                          265
  CLUS_4                         32                           95
  CLUS_5                         22                           64
  CLUS_6                         22                          112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       65     24     23     14     28
  AMP PEAK 19(12Q15) WILD-TYPE    115    115     76     97    105
D19V11, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         65                          115
  CLUS_2                         24                          115
  CLUS_3                         23                           76
  CLUS_4                         14                           97
  CLUS_5                         28                          105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       80     48     26
  AMP PEAK 19(12Q15) WILD-TYPE    225    199     84
D19V12, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         80                          225
  CLUS_2                         48                          199
  CLUS_3                         26                           84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 20(13Q34) MUTATED        3      5     19     43     16     10      4
  AMP PEAK 20(13Q34) WILD-TYPE     18     31    100     53     93     62     16
                              vv
clus                           CLUS_8
  AMP PEAK 20(13Q34) MUTATED        0
  AMP PEAK 20(13Q34) WILD-TYPE     40
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          3                           18
  CLUS_2                          5                           31
  CLUS_3                         19                          100
  CLUS_4                         43                           53
  CLUS_5                         16                           93
  CLUS_6                         10                           62
  CLUS_7                          4                           16
  CLUS_8                          0                           40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       17     14     23     38      8
  AMP PEAK 20(13Q34) WILD-TYPE     84    138     91     50     50
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         17                           84
  CLUS_2                         14                          138
  CLUS_3                         23                           91
  CLUS_4                         38                           50
  CLUS_5                          8                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       38     23     14     97      7
  AMP PEAK 20(13Q34) WILD-TYPE    222    389     79    168     42
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         38                          222
  CLUS_2                         23                          389
  CLUS_3                         14                           79
  CLUS_4                         97                          168
  CLUS_5                          7                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       50     17     24      5     14
  AMP PEAK 20(13Q34) WILD-TYPE     82    180    153     83    114
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         50                           82
  CLUS_2                         17                          180
  CLUS_3                         24                          153
  CLUS_4                          5                           83
  CLUS_5                         14                          114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       50     22     12
  AMP PEAK 20(13Q34) WILD-TYPE     99    110    105
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         50                           99
  CLUS_2                         22                          110
  CLUS_3                         12                          105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       10      9     39     17      9
  AMP PEAK 20(13Q34) WILD-TYPE     54     97     51     90     22
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         10                           54
  CLUS_2                          9                           97
  CLUS_3                         39                           51
  CLUS_4                         17                           90
  CLUS_5                          9                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       67    101     11
  AMP PEAK 20(13Q34) WILD-TYPE    476    197    221
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         67                          476
  CLUS_2                        101                          197
  CLUS_3                         11                          221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       31     22     21     13     74     18
  AMP PEAK 20(13Q34) WILD-TYPE    188    142    285    128    109     42
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         31                          188
  CLUS_2                         22                          142
  CLUS_3                         21                          285
  CLUS_4                         13                          128
  CLUS_5                         74                          109
  CLUS_6                         18                           42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED      109     22     45
  AMP PEAK 20(13Q34) WILD-TYPE    222    231    431
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                        109                          222
  CLUS_2                         22                          231
  CLUS_3                         45                          431
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       31     46     20     15      8     56
  AMP PEAK 20(13Q34) WILD-TYPE    200    114    302    112     78     78
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         31                          200
  CLUS_2                         46                          114
  CLUS_3                         20                          302
  CLUS_4                         15                          112
  CLUS_5                          8                           78
  CLUS_6                         56                           78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       19     47      6      8     17
  AMP PEAK 20(13Q34) WILD-TYPE    161     92     93    103    116
D20V11, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         19                          161
  CLUS_2                         47                           92
  CLUS_3                          6                           93
  CLUS_4                          8                          103
  CLUS_5                         17                          116
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       66     23      8
  AMP PEAK 20(13Q34) WILD-TYPE    239    224    102
D20V12, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         66                          239
  CLUS_2                         23                          224
  CLUS_3                          8                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED        5      9     33     11     21     26
  AMP PEAK 21(14Q21.1) WILD-TYPE     16     27     86     85     88     46
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 21(14Q21.1) MUTATED        6      0
  AMP PEAK 21(14Q21.1) WILD-TYPE     14     40
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            9                             27
  CLUS_3                           33                             86
  CLUS_4                           11                             85
  CLUS_5                           21                             88
  CLUS_6                           26                             46
  CLUS_7                            6                             14
  CLUS_8                            0                             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       29     24     42      8      8
  AMP PEAK 21(14Q21.1) WILD-TYPE     72    128     72     80     50
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           24                            128
  CLUS_3                           42                             72
  CLUS_4                            8                             80
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       97     36     22     54     11
  AMP PEAK 21(14Q21.1) WILD-TYPE    163    376     71    211     38
D21V3, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           97                            163
  CLUS_2                           36                            376
  CLUS_3                           22                             71
  CLUS_4                           54                            211
  CLUS_5                           11                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       17     33     55     12     15
  AMP PEAK 21(14Q21.1) WILD-TYPE    115    164    122     76    113
D21V4, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           17                            115
  CLUS_2                           33                            164
  CLUS_3                           55                            122
  CLUS_4                           12                             76
  CLUS_5                           15                            113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       42     24     21
  AMP PEAK 21(14Q21.1) WILD-TYPE    107    108     96
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           42                            107
  CLUS_2                           24                            108
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       11     16     14     37      9
  AMP PEAK 21(14Q21.1) WILD-TYPE     53     90     76     70     22
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           16                             90
  CLUS_3                           14                             76
  CLUS_4                           37                             70
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED      150     47     21
  AMP PEAK 21(14Q21.1) WILD-TYPE    393    251    211
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                          150                            393
  CLUS_2                           47                            251
  CLUS_3                           21                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       59     72     36     18     17     16
  AMP PEAK 21(14Q21.1) WILD-TYPE    160     92    270    123    166     44
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           59                            160
  CLUS_2                           72                             92
  CLUS_3                           36                            270
  CLUS_4                           18                            123
  CLUS_5                           17                            166
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       80     35     99
  AMP PEAK 21(14Q21.1) WILD-TYPE    251    218    377
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           80                            251
  CLUS_2                           35                            218
  CLUS_3                           99                            377
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       69     53     40     32      9     11
  AMP PEAK 21(14Q21.1) WILD-TYPE    162    107    282     95     77    123
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           69                            162
  CLUS_2                           53                            107
  CLUS_3                           40                            282
  CLUS_4                           32                             95
  CLUS_5                            9                             77
  CLUS_6                           11                            123
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       51     20     23     14     24
  AMP PEAK 21(14Q21.1) WILD-TYPE    129    119     76     97    109
D21V11, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           51                            129
  CLUS_2                           20                            119
  CLUS_3                           23                             76
  CLUS_4                           14                             97
  CLUS_5                           24                            109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       64     45     23
  AMP PEAK 21(14Q21.1) WILD-TYPE    241    202     87
D21V12, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           64                            241
  CLUS_2                           45                            202
  CLUS_3                           23                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        3      8     31     32      4     16
  AMP PEAK 22(15Q26.3) WILD-TYPE     18     28     88     64    105     56
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 22(15Q26.3) MUTATED        8      2
  AMP PEAK 22(15Q26.3) WILD-TYPE     12     38
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            8                             28
  CLUS_3                           31                             88
  CLUS_4                           32                             64
  CLUS_5                            4                            105
  CLUS_6                           16                             56
  CLUS_7                            8                             12
  CLUS_8                            2                             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       23     23     25     30      3
  AMP PEAK 22(15Q26.3) WILD-TYPE     78    129     89     58     55
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           23                            129
  CLUS_3                           25                             89
  CLUS_4                           30                             58
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       63     30      6     91      4
  AMP PEAK 22(15Q26.3) WILD-TYPE    197    382     87    174     45
D22V3, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           63                            197
  CLUS_2                           30                            382
  CLUS_3                            6                             87
  CLUS_4                           91                            174
  CLUS_5                            4                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       36     19     27     14     17
  AMP PEAK 22(15Q26.3) WILD-TYPE     96    178    150     74    111
D22V4, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           36                             96
  CLUS_2                           19                            178
  CLUS_3                           27                            150
  CLUS_4                           14                             74
  CLUS_5                           17                            111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       45     20     18
  AMP PEAK 22(15Q26.3) WILD-TYPE    104    112     99
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           45                            104
  CLUS_2                           20                            112
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED        9     15     30     25      4
  AMP PEAK 22(15Q26.3) WILD-TYPE     55     91     60     82     27
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           15                             91
  CLUS_3                           30                             60
  CLUS_4                           25                             82
  CLUS_5                            4                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       92     85     16
  AMP PEAK 22(15Q26.3) WILD-TYPE    451    213    216
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           92                            451
  CLUS_2                           85                            213
  CLUS_3                           16                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       50     33     29     13     62      6
  AMP PEAK 22(15Q26.3) WILD-TYPE    169    131    277    128    121     54
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           50                            169
  CLUS_2                           33                            131
  CLUS_3                           29                            277
  CLUS_4                           13                            128
  CLUS_5                           62                            121
  CLUS_6                            6                             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       92     28     67
  AMP PEAK 22(15Q26.3) WILD-TYPE    239    225    409
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           92                            239
  CLUS_2                           28                            225
  CLUS_3                           67                            409
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       42     44     27     16     15     43
  AMP PEAK 22(15Q26.3) WILD-TYPE    189    116    295    111     71     91
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           42                            189
  CLUS_2                           44                            116
  CLUS_3                           27                            295
  CLUS_4                           16                            111
  CLUS_5                           15                             71
  CLUS_6                           43                             91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       34     39     13     14     15
  AMP PEAK 22(15Q26.3) WILD-TYPE    146    100     86     97    118
D22V11, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           34                            146
  CLUS_2                           39                            100
  CLUS_3                           13                             86
  CLUS_4                           14                             97
  CLUS_5                           15                            118
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       75     28     12
  AMP PEAK 22(15Q26.3) WILD-TYPE    230    219     98
D22V12, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           75                            230
  CLUS_2                           28                            219
  CLUS_3                           12                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED        0      5     23      9     11     13
  AMP PEAK 23(17P11.2) WILD-TYPE     21     31     96     87     98     59
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 23(17P11.2) MUTATED        2      1
  AMP PEAK 23(17P11.2) WILD-TYPE     18     39
D23V1, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                            0                             21
  CLUS_2                            5                             31
  CLUS_3                           23                             96
  CLUS_4                            9                             87
  CLUS_5                           11                             98
  CLUS_6                           13                             59
  CLUS_7                            2                             18
  CLUS_8                            1                             39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       16     12     20      7      9
  AMP PEAK 23(17P11.2) WILD-TYPE     85    140     94     81     49
D23V2, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           12                            140
  CLUS_3                           20                             94
  CLUS_4                            7                             81
  CLUS_5                            9                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       62     23     13     35     13
  AMP PEAK 23(17P11.2) WILD-TYPE    198    389     80    230     36
D23V3, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           62                            198
  CLUS_2                           23                            389
  CLUS_3                           13                             80
  CLUS_4                           35                            230
  CLUS_5                           13                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       22     30     39      7      8
  AMP PEAK 23(17P11.2) WILD-TYPE    110    167    138     81    120
D23V4, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           22                            110
  CLUS_2                           30                            167
  CLUS_3                           39                            138
  CLUS_4                            7                             81
  CLUS_5                            8                            120
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       21     19     13
  AMP PEAK 23(17P11.2) WILD-TYPE    128    113    104
D23V5, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           21                            128
  CLUS_2                           19                            113
  CLUS_3                           13                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED        7     12      7     17     10
  AMP PEAK 23(17P11.2) WILD-TYPE     57     94     83     90     21
D23V6, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                           12                             94
  CLUS_3                            7                             83
  CLUS_4                           17                             90
  CLUS_5                           10                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       91     38     15
  AMP PEAK 23(17P11.2) WILD-TYPE    452    260    217
D23V7, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           91                            452
  CLUS_2                           38                            260
  CLUS_3                           15                            217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED       37     32     32     14     18     11
  AMP PEAK 23(17P11.2) WILD-TYPE    182    132    274    127    165     49
D23V8, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           37                            182
  CLUS_2                           32                            132
  CLUS_3                           32                            274
  CLUS_4                           14                            127
  CLUS_5                           18                            165
  CLUS_6                           11                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       50     32     63
  AMP PEAK 23(17P11.2) WILD-TYPE    281    221    413
D23V9, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           50                            281
  CLUS_2                           32                            221
  CLUS_3                           63                            413
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17P11.2) MUTATED       43     23     35     17     14     13
  AMP PEAK 23(17P11.2) WILD-TYPE    188    137    287    110     72    121
D23V10, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           43                            188
  CLUS_2                           23                            137
  CLUS_3                           35                            287
  CLUS_4                           17                            110
  CLUS_5                           14                             72
  CLUS_6                           13                            121
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17P11.2) MUTATED       27     19     11     10     19
  AMP PEAK 23(17P11.2) WILD-TYPE    153    120     88    101    114
D23V11, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           27                            153
  CLUS_2                           19                            120
  CLUS_3                           11                             88
  CLUS_4                           10                            101
  CLUS_5                           19                            114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17P11.2) MUTATED       48     29      9
  AMP PEAK 23(17P11.2) WILD-TYPE    257    218    101
D23V12, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           48                            257
  CLUS_2                           29                            218
  CLUS_3                            9                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 24(17Q12) MUTATED        9     11     53     19     14     49      7
  AMP PEAK 24(17Q12) WILD-TYPE     12     25     66     77     95     23     13
                              vv
clus                           CLUS_8
  AMP PEAK 24(17Q12) MUTATED        4
  AMP PEAK 24(17Q12) WILD-TYPE     36
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          9                           12
  CLUS_2                         11                           25
  CLUS_3                         53                           66
  CLUS_4                         19                           77
  CLUS_5                         14                           95
  CLUS_6                         49                           23
  CLUS_7                          7                           13
  CLUS_8                          4                           36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED       40     28     71     16     11
  AMP PEAK 24(17Q12) WILD-TYPE     61    124     43     72     47
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         40                           61
  CLUS_2                         28                          124
  CLUS_3                         71                           43
  CLUS_4                         16                           72
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED      171     59     21     66     15
  AMP PEAK 24(17Q12) WILD-TYPE     89    353     72    199     34
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        171                           89
  CLUS_2                         59                          353
  CLUS_3                         21                           72
  CLUS_4                         66                          199
  CLUS_5                         15                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED       33     46     85     23     29
  AMP PEAK 24(17Q12) WILD-TYPE     99    151     92     65     99
D24V4, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         33                           99
  CLUS_2                         46                          151
  CLUS_3                         85                           92
  CLUS_4                         23                           65
  CLUS_5                         29                           99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED       58     39     32
  AMP PEAK 24(17Q12) WILD-TYPE     91     93     85
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         58                           91
  CLUS_2                         39                           93
  CLUS_3                         32                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED        9     28     20     41     31
  AMP PEAK 24(17Q12) WILD-TYPE     55     78     70     66      0
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          9                           55
  CLUS_2                         28                           78
  CLUS_3                         20                           70
  CLUS_4                         41                           66
  CLUS_5                         31                            0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED      191    104     35
  AMP PEAK 24(17Q12) WILD-TYPE    352    194    197
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        191                          352
  CLUS_2                        104                          194
  CLUS_3                         35                          197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q12) MUTATED       94     86     58     19     33     40
  AMP PEAK 24(17Q12) WILD-TYPE    125     78    248    122    150     20
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         94                          125
  CLUS_2                         86                           78
  CLUS_3                         58                          248
  CLUS_4                         19                          122
  CLUS_5                         33                          150
  CLUS_6                         40                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED      120     60    145
  AMP PEAK 24(17Q12) WILD-TYPE    211    193    331
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        120                          211
  CLUS_2                         60                          193
  CLUS_3                        145                          331
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q12) MUTATED      101     71     73     32     26     22
  AMP PEAK 24(17Q12) WILD-TYPE    130     89    249     95     60    112
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        101                          130
  CLUS_2                         71                           89
  CLUS_3                         73                          249
  CLUS_4                         32                           95
  CLUS_5                         26                           60
  CLUS_6                         22                          112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q12) MUTATED       77     38     19     29     37
  AMP PEAK 24(17Q12) WILD-TYPE    103    101     80     82     96
D24V11, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         77                          103
  CLUS_2                         38                          101
  CLUS_3                         19                           80
  CLUS_4                         29                           82
  CLUS_5                         37                           96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q12) MUTATED      117     58     25
  AMP PEAK 24(17Q12) WILD-TYPE    188    189     85
D24V12, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        117                          188
  CLUS_2                         58                          189
  CLUS_3                         25                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED        9     17     81     29     16     44
  AMP PEAK 25(17Q23.1) WILD-TYPE     12     19     38     67     93     28
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 25(17Q23.1) MUTATED       11      9
  AMP PEAK 25(17Q23.1) WILD-TYPE      9     31
D25V1, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           17                             19
  CLUS_3                           81                             38
  CLUS_4                           29                             67
  CLUS_5                           16                             93
  CLUS_6                           44                             28
  CLUS_7                           11                              9
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED       62     45     71     25     13
  AMP PEAK 25(17Q23.1) WILD-TYPE     39    107     43     63     45
D25V2, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           62                             39
  CLUS_2                           45                            107
  CLUS_3                           71                             43
  CLUS_4                           25                             63
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED      201     68     23    113     20
  AMP PEAK 25(17Q23.1) WILD-TYPE     59    344     70    152     29
D25V3, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          201                             59
  CLUS_2                           68                            344
  CLUS_3                           23                             70
  CLUS_4                          113                            152
  CLUS_5                           20                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED       52     61     99     28     40
  AMP PEAK 25(17Q23.1) WILD-TYPE     80    136     78     60     88
D25V4, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           52                             80
  CLUS_2                           61                            136
  CLUS_3                           99                             78
  CLUS_4                           28                             60
  CLUS_5                           40                             88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED       69     52     45
  AMP PEAK 25(17Q23.1) WILD-TYPE     80     80     72
D25V5, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           69                             80
  CLUS_2                           52                             80
  CLUS_3                           45                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED       13     40     26     68     19
  AMP PEAK 25(17Q23.1) WILD-TYPE     51     66     64     39     12
D25V6, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           40                             66
  CLUS_3                           26                             64
  CLUS_4                           68                             39
  CLUS_5                           19                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED      249    122     52
  AMP PEAK 25(17Q23.1) WILD-TYPE    294    176    180
D25V7, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          249                            294
  CLUS_2                          122                            176
  CLUS_3                           52                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED      126    100     88     20     60     29
  AMP PEAK 25(17Q23.1) WILD-TYPE     93     64    218    121    123     31
D25V8, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          126                             93
  CLUS_2                          100                             64
  CLUS_3                           88                            218
  CLUS_4                           20                            121
  CLUS_5                           60                            123
  CLUS_6                           29                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED      166     64    187
  AMP PEAK 25(17Q23.1) WILD-TYPE    165    189    289
D25V9, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          166                            165
  CLUS_2                           64                            189
  CLUS_3                          187                            289
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(17Q23.1) MUTATED      126     84     93     34     36     44
  AMP PEAK 25(17Q23.1) WILD-TYPE    105     76    229     93     50     90
D25V10, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          126                            105
  CLUS_2                           84                             76
  CLUS_3                           93                            229
  CLUS_4                           34                             93
  CLUS_5                           36                             50
  CLUS_6                           44                             90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(17Q23.1) MUTATED       88     58     26     27     47
  AMP PEAK 25(17Q23.1) WILD-TYPE     92     81     73     84     86
D25V11, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           88                             92
  CLUS_2                           58                             81
  CLUS_3                           26                             73
  CLUS_4                           27                             84
  CLUS_5                           47                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(17Q23.1) MUTATED      150     67     29
  AMP PEAK 25(17Q23.1) WILD-TYPE    155    180     81
D25V12, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          150                            155
  CLUS_2                           67                            180
  CLUS_3                           29                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED        5      6     22     40     16     11
  AMP PEAK 26(19P13.12) WILD-TYPE     16     30     97     56     93     61
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 26(19P13.12) MUTATED        5      4
  AMP PEAK 26(19P13.12) WILD-TYPE     15     36
D26V1, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                             5                              16
  CLUS_2                             6                              30
  CLUS_3                            22                              97
  CLUS_4                            40                              56
  CLUS_5                            16                              93
  CLUS_6                            11                              61
  CLUS_7                             5                              15
  CLUS_8                             4                              36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       19     21     23     35     11
  AMP PEAK 26(19P13.12) WILD-TYPE     82    131     91     53     47
D26V2, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            19                              82
  CLUS_2                            21                             131
  CLUS_3                            23                              91
  CLUS_4                            35                              53
  CLUS_5                            11                              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       49     38     29    100     13
  AMP PEAK 26(19P13.12) WILD-TYPE    211    374     64    165     36
D26V3, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            49                             211
  CLUS_2                            38                             374
  CLUS_3                            29                              64
  CLUS_4                           100                             165
  CLUS_5                            13                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       47     25     31     16     26
  AMP PEAK 26(19P13.12) WILD-TYPE     85    172    146     72    102
D26V4, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            47                              85
  CLUS_2                            25                             172
  CLUS_3                            31                             146
  CLUS_4                            16                              72
  CLUS_5                            26                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED       49     25     17
  AMP PEAK 26(19P13.12) WILD-TYPE    100    107    100
D26V5, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            49                             100
  CLUS_2                            25                             107
  CLUS_3                            17                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       12     16     35     21      7
  AMP PEAK 26(19P13.12) WILD-TYPE     52     90     55     86     24
D26V6, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                            16                              90
  CLUS_3                            35                              55
  CLUS_4                            21                              86
  CLUS_5                             7                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED       88    102     37
  AMP PEAK 26(19P13.12) WILD-TYPE    455    196    195
D26V7, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            88                             455
  CLUS_2                           102                             196
  CLUS_3                            37                             195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED       39     30     54     15     74     15
  AMP PEAK 26(19P13.12) WILD-TYPE    180    134    252    126    109     45
D26V8, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            39                             180
  CLUS_2                            30                             134
  CLUS_3                            54                             252
  CLUS_4                            15                             126
  CLUS_5                            74                             109
  CLUS_6                            15                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED      105     48     70
  AMP PEAK 26(19P13.12) WILD-TYPE    226    205    406
D26V9, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                           105                             226
  CLUS_2                            48                             205
  CLUS_3                            70                             406
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19P13.12) MUTATED       44     42     53     18     10     56
  AMP PEAK 26(19P13.12) WILD-TYPE    187    118    269    109     76     78
D26V10, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            44                             187
  CLUS_2                            42                             118
  CLUS_3                            53                             269
  CLUS_4                            18                             109
  CLUS_5                            10                              76
  CLUS_6                            56                              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19P13.12) MUTATED       27     54     16     27     18
  AMP PEAK 26(19P13.12) WILD-TYPE    153     85     83     84    115
D26V11, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            27                             153
  CLUS_2                            54                              85
  CLUS_3                            16                              83
  CLUS_4                            27                              84
  CLUS_5                            18                             115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19P13.12) MUTATED       77     44     21
  AMP PEAK 26(19P13.12) WILD-TYPE    228    203     89
D26V12, multiclass
        clus
vv       AMP PEAK 26(19P13.12) MUTATED AMP PEAK 26(19P13.12) WILD-TYPE
  CLUS_1                            77                             228
  CLUS_2                            44                             203
  CLUS_3                            21                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 27(19Q12) MUTATED        4      5     29     55     15     20      7
  AMP PEAK 27(19Q12) WILD-TYPE     17     31     90     41     94     52     13
                              vv
clus                           CLUS_8
  AMP PEAK 27(19Q12) MUTATED        5
  AMP PEAK 27(19Q12) WILD-TYPE     35
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          4                           17
  CLUS_2                          5                           31
  CLUS_3                         29                           90
  CLUS_4                         55                           41
  CLUS_5                         15                           94
  CLUS_6                         20                           52
  CLUS_7                          7                           13
  CLUS_8                          5                           35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       20     24     35     50     11
  AMP PEAK 27(19Q12) WILD-TYPE     81    128     79     38     47
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         20                           81
  CLUS_2                         24                          128
  CLUS_3                         35                           79
  CLUS_4                         50                           38
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       55     39     30    143     16
  AMP PEAK 27(19Q12) WILD-TYPE    205    373     63    122     33
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         55                          205
  CLUS_2                         39                          373
  CLUS_3                         30                           63
  CLUS_4                        143                          122
  CLUS_5                         16                           33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       69     29     43     15     25
  AMP PEAK 27(19Q12) WILD-TYPE     63    168    134     73    103
D27V4, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         69                           63
  CLUS_2                         29                          168
  CLUS_3                         43                          134
  CLUS_4                         15                           73
  CLUS_5                         25                          103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED       64     22     24
  AMP PEAK 27(19Q12) WILD-TYPE     85    110     93
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         64                           85
  CLUS_2                         22                          110
  CLUS_3                         24                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       15     21     46     18     10
  AMP PEAK 27(19Q12) WILD-TYPE     49     85     44     89     21
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         15                           49
  CLUS_2                         21                           85
  CLUS_3                         46                           44
  CLUS_4                         18                           89
  CLUS_5                         10                           21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED      107    140     35
  AMP PEAK 27(19Q12) WILD-TYPE    436    158    197
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                        107                          436
  CLUS_2                        140                          158
  CLUS_3                         35                          197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q12) MUTATED       45     44     51     15    104     23
  AMP PEAK 27(19Q12) WILD-TYPE    174    120    255    126     79     37
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         45                          174
  CLUS_2                         44                          120
  CLUS_3                         51                          255
  CLUS_4                         15                          126
  CLUS_5                        104                           79
  CLUS_6                         23                           37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED      153     46     80
  AMP PEAK 27(19Q12) WILD-TYPE    178    207    396
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                        153                          178
  CLUS_2                         46                          207
  CLUS_3                         80                          396
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q12) MUTATED       61     61     51     19     12     75
  AMP PEAK 27(19Q12) WILD-TYPE    170     99    271    108     74     59
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         61                          170
  CLUS_2                         61                           99
  CLUS_3                         51                          271
  CLUS_4                         19                          108
  CLUS_5                         12                           74
  CLUS_6                         75                           59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q12) MUTATED       37     72     16     25     26
  AMP PEAK 27(19Q12) WILD-TYPE    143     67     83     86    107
D27V11, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         37                          143
  CLUS_2                         72                           67
  CLUS_3                         16                           83
  CLUS_4                         25                           86
  CLUS_5                         26                          107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q12) MUTATED      102     52     22
  AMP PEAK 27(19Q12) WILD-TYPE    203    195     88
D27V12, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                        102                          203
  CLUS_2                         52                          195
  CLUS_3                         22                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED        5      8     36     40     17     20
  AMP PEAK 28(19Q13.42) WILD-TYPE     16     28     83     56     92     52
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 28(19Q13.42) MUTATED       10      6
  AMP PEAK 28(19Q13.42) WILD-TYPE     10     34
D28V1, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                             5                              16
  CLUS_2                             8                              28
  CLUS_3                            36                              83
  CLUS_4                            40                              56
  CLUS_5                            17                              92
  CLUS_6                            20                              52
  CLUS_7                            10                              10
  CLUS_8                             6                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       23     31     42     34     12
  AMP PEAK 28(19Q13.42) WILD-TYPE     78    121     72     54     46
D28V2, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            23                              78
  CLUS_2                            31                             121
  CLUS_3                            42                              72
  CLUS_4                            34                              54
  CLUS_5                            12                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       74     42     30    109     20
  AMP PEAK 28(19Q13.42) WILD-TYPE    186    370     63    156     29
D28V3, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            74                             186
  CLUS_2                            42                             370
  CLUS_3                            30                              63
  CLUS_4                           109                             156
  CLUS_5                            20                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       42     35     56     19     21
  AMP PEAK 28(19Q13.42) WILD-TYPE     90    162    121     69    107
D28V4, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            42                              90
  CLUS_2                            35                             162
  CLUS_3                            56                             121
  CLUS_4                            19                              69
  CLUS_5                            21                             107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED       57     26     27
  AMP PEAK 28(19Q13.42) WILD-TYPE     92    106     90
D28V5, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            57                              92
  CLUS_2                            26                             106
  CLUS_3                            27                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       16     25     32     26     11
  AMP PEAK 28(19Q13.42) WILD-TYPE     48     81     58     81     20
D28V6, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            16                              48
  CLUS_2                            25                              81
  CLUS_3                            32                              58
  CLUS_4                            26                              81
  CLUS_5                            11                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED      136     98     40
  AMP PEAK 28(19Q13.42) WILD-TYPE    407    200    192
D28V7, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                           136                             407
  CLUS_2                            98                             200
  CLUS_3                            40                             192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED       62     51     63     16     63     19
  AMP PEAK 28(19Q13.42) WILD-TYPE    157    113    243    125    120     41
D28V8, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            62                             157
  CLUS_2                            51                             113
  CLUS_3                            63                             243
  CLUS_4                            16                             125
  CLUS_5                            63                             120
  CLUS_6                            19                              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED      119     49    103
  AMP PEAK 28(19Q13.42) WILD-TYPE    212    204    373
D28V9, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                           119                             212
  CLUS_2                            49                             204
  CLUS_3                           103                             373
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(19Q13.42) MUTATED       71     59     61     20     16     44
  AMP PEAK 28(19Q13.42) WILD-TYPE    160    101    261    107     70     90
D28V10, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            71                             160
  CLUS_2                            59                             101
  CLUS_3                            61                             261
  CLUS_4                            20                             107
  CLUS_5                            16                              70
  CLUS_6                            44                              90
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(19Q13.42) MUTATED       50     43     19     23     31
  AMP PEAK 28(19Q13.42) WILD-TYPE    130     96     80     88    102
D28V11, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            50                             130
  CLUS_2                            43                              96
  CLUS_3                            19                              80
  CLUS_4                            23                              88
  CLUS_5                            31                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(19Q13.42) MUTATED       89     52     25
  AMP PEAK 28(19Q13.42) WILD-TYPE    216    195     85
D28V12, multiclass
        clus
vv       AMP PEAK 28(19Q13.42) MUTATED AMP PEAK 28(19Q13.42) WILD-TYPE
  CLUS_1                            89                             216
  CLUS_2                            52                             195
  CLUS_3                            25                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED       12     18     85     52     35     49
  AMP PEAK 29(20Q13.2) WILD-TYPE      9     18     34     44     74     23
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 29(20Q13.2) MUTATED       15     10
  AMP PEAK 29(20Q13.2) WILD-TYPE      5     30
D29V1, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           18                             18
  CLUS_3                           85                             34
  CLUS_4                           52                             44
  CLUS_5                           35                             74
  CLUS_6                           49                             23
  CLUS_7                           15                              5
  CLUS_8                           10                             30
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED       73     56     86     44     17
  AMP PEAK 29(20Q13.2) WILD-TYPE     28     96     28     44     41
D29V2, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           73                             28
  CLUS_2                           56                             96
  CLUS_3                           86                             28
  CLUS_4                           44                             44
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED      210     75     57    177     28
  AMP PEAK 29(20Q13.2) WILD-TYPE     50    337     36     88     21
D29V3, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          210                             50
  CLUS_2                           75                            337
  CLUS_3                           57                             36
  CLUS_4                          177                             88
  CLUS_5                           28                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED       83     78    113     29     49
  AMP PEAK 29(20Q13.2) WILD-TYPE     49    119     64     59     79
D29V4, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           83                             49
  CLUS_2                           78                            119
  CLUS_3                          113                             64
  CLUS_4                           29                             59
  CLUS_5                           49                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      101     66     54
  AMP PEAK 29(20Q13.2) WILD-TYPE     48     66     63
D29V5, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          101                             48
  CLUS_2                           66                             66
  CLUS_3                           54                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED       29     44     53     73     22
  AMP PEAK 29(20Q13.2) WILD-TYPE     35     62     37     34      9
D29V6, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           44                             62
  CLUS_3                           53                             37
  CLUS_4                           73                             34
  CLUS_5                           22                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      309    172     63
  AMP PEAK 29(20Q13.2) WILD-TYPE    234    126    169
D29V7, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          309                            234
  CLUS_2                          172                            126
  CLUS_3                           63                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED      153    120    104     36     98     33
  AMP PEAK 29(20Q13.2) WILD-TYPE     66     44    202    105     85     27
D29V8, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          153                             66
  CLUS_2                          120                             44
  CLUS_3                          104                            202
  CLUS_4                           36                            105
  CLUS_5                           98                             85
  CLUS_6                           33                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      211     83    245
  AMP PEAK 29(20Q13.2) WILD-TYPE    120    170    231
D29V9, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          211                            120
  CLUS_2                           83                            170
  CLUS_3                          245                            231
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q13.2) MUTATED      156    104    101     65     42     71
  AMP PEAK 29(20Q13.2) WILD-TYPE     75     56    221     62     44     63
D29V10, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          156                             75
  CLUS_2                          104                             56
  CLUS_3                          101                            221
  CLUS_4                           65                             62
  CLUS_5                           42                             44
  CLUS_6                           71                             63
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q13.2) MUTATED      117     87     42     45     51
  AMP PEAK 29(20Q13.2) WILD-TYPE     63     52     57     66     82
D29V11, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          117                             63
  CLUS_2                           87                             52
  CLUS_3                           42                             57
  CLUS_4                           45                             66
  CLUS_5                           51                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q13.2) MUTATED      188    103     51
  AMP PEAK 29(20Q13.2) WILD-TYPE    117    144     59
D29V12, multiclass
        clus
vv       AMP PEAK 29(20Q13.2) MUTATED AMP PEAK 29(20Q13.2) WILD-TYPE
  CLUS_1                          188                            117
  CLUS_2                          103                            144
  CLUS_3                           51                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED        9     11     61     42     31     46
  DEL PEAK  1(1P36.13) WILD-TYPE     12     25     58     54     78     26
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.13) MUTATED        7     12
  DEL PEAK  1(1P36.13) WILD-TYPE     13     28
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           11                             25
  CLUS_3                           61                             58
  CLUS_4                           42                             54
  CLUS_5                           31                             78
  CLUS_6                           46                             26
  CLUS_7                            7                             13
  CLUS_8                           12                             28
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       57     39     67     39     17
  DEL PEAK  1(1P36.13) WILD-TYPE     44    113     47     49     41
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           57                             44
  CLUS_2                           39                            113
  CLUS_3                           67                             47
  CLUS_4                           39                             49
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED      168     66     60    135     22
  DEL PEAK  1(1P36.13) WILD-TYPE     92    346     33    130     27
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          168                             92
  CLUS_2                           66                            346
  CLUS_3                           60                             33
  CLUS_4                          135                            130
  CLUS_5                           22                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       58     64    110     24     36
  DEL PEAK  1(1P36.13) WILD-TYPE     74    133     67     64     92
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           58                             74
  CLUS_2                           64                            133
  CLUS_3                          110                             67
  CLUS_4                           24                             64
  CLUS_5                           36                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       79     57     38
  DEL PEAK  1(1P36.13) WILD-TYPE     70     75     79
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           79                             70
  CLUS_2                           57                             75
  CLUS_3                           38                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       24     33     41     58     18
  DEL PEAK  1(1P36.13) WILD-TYPE     40     73     49     49     13
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           24                             40
  CLUS_2                           33                             73
  CLUS_3                           41                             49
  CLUS_4                           58                             49
  CLUS_5                           18                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      263    127     58
  DEL PEAK  1(1P36.13) WILD-TYPE    280    171    174
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          263                            280
  CLUS_2                          127                            171
  CLUS_3                           58                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      112    106     99     33     80     18
  DEL PEAK  1(1P36.13) WILD-TYPE    107     58    207    108    103     42
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          112                            107
  CLUS_2                          106                             58
  CLUS_3                           99                            207
  CLUS_4                           33                            108
  CLUS_5                           80                            103
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      162     80    195
  DEL PEAK  1(1P36.13) WILD-TYPE    169    173    281
D30V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          162                            169
  CLUS_2                           80                            173
  CLUS_3                          195                            281
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED      116     75     92     60     34     60
  DEL PEAK  1(1P36.13) WILD-TYPE    115     85    230     67     52     74
D30V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          116                            115
  CLUS_2                           75                             85
  CLUS_3                           92                            230
  CLUS_4                           60                             67
  CLUS_5                           34                             52
  CLUS_6                           60                             74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       82     57     42     28     41
  DEL PEAK  1(1P36.13) WILD-TYPE     98     82     57     83     92
D30V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           82                             98
  CLUS_2                           57                             82
  CLUS_3                           42                             57
  CLUS_4                           28                             83
  CLUS_5                           41                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      127     86     37
  DEL PEAK  1(1P36.13) WILD-TYPE    178    161     73
D30V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          127                            178
  CLUS_2                           86                            161
  CLUS_3                           37                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        8     12     49     23     35     38
  DEL PEAK  2(1P22.1) WILD-TYPE     13     24     70     73     74     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  2(1P22.1) MUTATED        7     11
  DEL PEAK  2(1P22.1) WILD-TYPE     13     29
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           8                            13
  CLUS_2                          12                            24
  CLUS_3                          49                            70
  CLUS_4                          23                            73
  CLUS_5                          35                            74
  CLUS_6                          38                            34
  CLUS_7                           7                            13
  CLUS_8                          11                            29
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       49     40     62     18     14
  DEL PEAK  2(1P22.1) WILD-TYPE     52    112     52     70     44
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          49                            52
  CLUS_2                          40                           112
  CLUS_3                          62                            52
  CLUS_4                          18                            70
  CLUS_5                          14                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED      143     64     58     81     15
  DEL PEAK  2(1P22.1) WILD-TYPE    117    348     35    184     34
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         143                           117
  CLUS_2                          64                           348
  CLUS_3                          58                            35
  CLUS_4                          81                           184
  CLUS_5                          15                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       32     55     87     25     29
  DEL PEAK  2(1P22.1) WILD-TYPE    100    142     90     63     99
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          32                           100
  CLUS_2                          55                           142
  CLUS_3                          87                            90
  CLUS_4                          25                            63
  CLUS_5                          29                            99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       58     51     28
  DEL PEAK  2(1P22.1) WILD-TYPE     91     81     89
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          58                            91
  CLUS_2                          51                            81
  CLUS_3                          28                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       21     28     23     48     17
  DEL PEAK  2(1P22.1) WILD-TYPE     43     78     67     59     14
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          21                            43
  CLUS_2                          28                            78
  CLUS_3                          23                            67
  CLUS_4                          48                            59
  CLUS_5                          17                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED      222     80     56
  DEL PEAK  2(1P22.1) WILD-TYPE    321    218    176
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         222                           321
  CLUS_2                          80                           218
  CLUS_3                          56                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED       89     96     86     32     38     17
  DEL PEAK  2(1P22.1) WILD-TYPE    130     68    220    109    145     43
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          89                           130
  CLUS_2                          96                            68
  CLUS_3                          86                           220
  CLUS_4                          32                           109
  CLUS_5                          38                           145
  CLUS_6                          17                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED      110     69    173
  DEL PEAK  2(1P22.1) WILD-TYPE    221    184    303
D31V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         110                           221
  CLUS_2                          69                           184
  CLUS_3                         173                           303
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED       99     56     84     58     29     26
  DEL PEAK  2(1P22.1) WILD-TYPE    132    104    238     69     57    108
D31V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          99                           132
  CLUS_2                          56                           104
  CLUS_3                          84                           238
  CLUS_4                          58                            69
  CLUS_5                          29                            57
  CLUS_6                          26                           108
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       63     35     32     27     43
  DEL PEAK  2(1P22.1) WILD-TYPE    117    104     67     84     90
D31V11, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          63                           117
  CLUS_2                          35                           104
  CLUS_3                          32                            67
  CLUS_4                          27                            84
  CLUS_5                          43                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       93     75     32
  DEL PEAK  2(1P22.1) WILD-TYPE    212    172     78
D31V12, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          93                           212
  CLUS_2                          75                           172
  CLUS_3                          32                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED        5      9     42     49     24     28
  DEL PEAK  3(2Q37.3) WILD-TYPE     16     27     77     47     85     44
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2Q37.3) MUTATED        6      0
  DEL PEAK  3(2Q37.3) WILD-TYPE     14     40
D32V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           9                            27
  CLUS_3                          42                            77
  CLUS_4                          49                            47
  CLUS_5                          24                            85
  CLUS_6                          28                            44
  CLUS_7                           6                            14
  CLUS_8                           0                            40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       40     22     48     43     10
  DEL PEAK  3(2Q37.3) WILD-TYPE     61    130     66     45     48
D32V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          40                            61
  CLUS_2                          22                           130
  CLUS_3                          48                            66
  CLUS_4                          43                            45
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       99     43     28    128     18
  DEL PEAK  3(2Q37.3) WILD-TYPE    161    369     65    137     31
D32V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          99                           161
  CLUS_2                          43                           369
  CLUS_3                          28                            65
  CLUS_4                         128                           137
  CLUS_5                          18                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       64     46     49     15     19
  DEL PEAK  3(2Q37.3) WILD-TYPE     68    151    128     73    109
D32V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          64                            68
  CLUS_2                          46                           151
  CLUS_3                          49                           128
  CLUS_4                          15                            73
  CLUS_5                          19                           109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       73     40     14
  DEL PEAK  3(2Q37.3) WILD-TYPE     76     92    103
D32V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          73                            76
  CLUS_2                          40                            92
  CLUS_3                          14                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       19     10     41     45     12
  DEL PEAK  3(2Q37.3) WILD-TYPE     45     96     49     62     19
D32V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          19                            45
  CLUS_2                          10                            96
  CLUS_3                          41                            49
  CLUS_4                          45                            62
  CLUS_5                          12                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED      157    132     24
  DEL PEAK  3(2Q37.3) WILD-TYPE    386    166    208
D32V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         157                           386
  CLUS_2                         132                           166
  CLUS_3                          24                           208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       76     72     44     19     88     14
  DEL PEAK  3(2Q37.3) WILD-TYPE    143     92    262    122     95     46
D32V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          76                           143
  CLUS_2                          72                            92
  CLUS_3                          44                           262
  CLUS_4                          19                           122
  CLUS_5                          88                            95
  CLUS_6                          14                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED      147     40    121
  DEL PEAK  3(2Q37.3) WILD-TYPE    184    213    355
D32V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         147                           184
  CLUS_2                          40                           213
  CLUS_3                         121                           355
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q37.3) MUTATED       74     53     52     36     25     68
  DEL PEAK  3(2Q37.3) WILD-TYPE    157    107    270     91     61     66
D32V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          74                           157
  CLUS_2                          53                           107
  CLUS_3                          52                           270
  CLUS_4                          36                            91
  CLUS_5                          25                            61
  CLUS_6                          68                            66
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       59     61     14     20     27
  DEL PEAK  3(2Q37.3) WILD-TYPE    121     78     85     91    106
D32V11, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          59                           121
  CLUS_2                          61                            78
  CLUS_3                          14                            85
  CLUS_4                          20                            91
  CLUS_5                          27                           106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED      108     48     25
  DEL PEAK  3(2Q37.3) WILD-TYPE    197    199     85
D32V12, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         108                           197
  CLUS_2                          48                           199
  CLUS_3                          25                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED        5     15     38     52      8     35
  DEL PEAK  4(3P21.31) WILD-TYPE     16     21     81     44    101     37
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  4(3P21.31) MUTATED        9      7
  DEL PEAK  4(3P21.31) WILD-TYPE     11     33
D33V1, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           15                             21
  CLUS_3                           38                             81
  CLUS_4                           52                             44
  CLUS_5                            8                            101
  CLUS_6                           35                             37
  CLUS_7                            9                             11
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       29     36     55     48      1
  DEL PEAK  4(3P21.31) WILD-TYPE     72    116     59     40     57
D33V2, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           36                            116
  CLUS_3                           55                             59
  CLUS_4                           48                             40
  CLUS_5                            1                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       99     60     18    164      6
  DEL PEAK  4(3P21.31) WILD-TYPE    161    352     75    101     43
D33V3, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           99                            161
  CLUS_2                           60                            352
  CLUS_3                           18                             75
  CLUS_4                          164                            101
  CLUS_5                            6                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       70     31     74     23     27
  DEL PEAK  4(3P21.31) WILD-TYPE     62    166    103     65    101
D33V4, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           70                             62
  CLUS_2                           31                            166
  CLUS_3                           74                            103
  CLUS_4                           23                             65
  CLUS_5                           27                            101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED       81     27     36
  DEL PEAK  4(3P21.31) WILD-TYPE     68    105     81
D33V5, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           81                             68
  CLUS_2                           27                            105
  CLUS_3                           36                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED        5     32     55     41     11
  DEL PEAK  4(3P21.31) WILD-TYPE     59     74     35     66     20
D33V6, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           32                             74
  CLUS_3                           55                             35
  CLUS_4                           41                             66
  CLUS_5                           11                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      144    158     44
  DEL PEAK  4(3P21.31) WILD-TYPE    399    140    188
D33V7, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          144                            399
  CLUS_2                          158                            140
  CLUS_3                           44                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       60     85     72      7    100     22
  DEL PEAK  4(3P21.31) WILD-TYPE    159     79    234    134     83     38
D33V8, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           60                            159
  CLUS_2                           85                             79
  CLUS_3                           72                            234
  CLUS_4                            7                            134
  CLUS_5                          100                             83
  CLUS_6                           22                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      171     54    115
  DEL PEAK  4(3P21.31) WILD-TYPE    160    199    361
D33V9, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          171                            160
  CLUS_2                           54                            199
  CLUS_3                          115                            361
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.31) MUTATED       98     69     66     23     11     73
  DEL PEAK  4(3P21.31) WILD-TYPE    133     91    256    104     75     61
D33V10, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           98                            133
  CLUS_2                           69                             91
  CLUS_3                           66                            256
  CLUS_4                           23                            104
  CLUS_5                           11                             75
  CLUS_6                           73                             61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.31) MUTATED       54     80     22     21     36
  DEL PEAK  4(3P21.31) WILD-TYPE    126     59     77     90     97
D33V11, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                           54                            126
  CLUS_2                           80                             59
  CLUS_3                           22                             77
  CLUS_4                           21                             90
  CLUS_5                           36                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.31) MUTATED      123     67     23
  DEL PEAK  4(3P21.31) WILD-TYPE    182    180     87
D33V12, multiclass
        clus
vv       DEL PEAK  4(3P21.31) MUTATED DEL PEAK  4(3P21.31) WILD-TYPE
  CLUS_1                          123                            182
  CLUS_2                           67                            180
  CLUS_3                           23                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED        3     10     25     58     22     38
  DEL PEAK  5(4P16.3) WILD-TYPE     18     26     94     38     87     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(4P16.3) MUTATED        7      6
  DEL PEAK  5(4P16.3) WILD-TYPE     13     34
D34V1, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                          10                            26
  CLUS_3                          25                            94
  CLUS_4                          58                            38
  CLUS_5                          22                            87
  CLUS_6                          38                            34
  CLUS_7                           7                            13
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       27     28     51     52     11
  DEL PEAK  5(4P16.3) WILD-TYPE     74    124     63     36     47
D34V2, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          28                           124
  CLUS_3                          51                            63
  CLUS_4                          52                            36
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       75     50     44    156     14
  DEL PEAK  5(4P16.3) WILD-TYPE    185    362     49    109     35
D34V3, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          75                           185
  CLUS_2                          50                           362
  CLUS_3                          44                            49
  CLUS_4                         156                           109
  CLUS_5                          14                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       84     40     50     15     29
  DEL PEAK  5(4P16.3) WILD-TYPE     48    157    127     73     99
D34V4, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          84                            48
  CLUS_2                          40                           157
  CLUS_3                          50                           127
  CLUS_4                          15                            73
  CLUS_5                          29                            99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED       77     38     25
  DEL PEAK  5(4P16.3) WILD-TYPE     72     94     92
D34V5, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          77                            72
  CLUS_2                          38                            94
  CLUS_3                          25                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       18     25     54     32     11
  DEL PEAK  5(4P16.3) WILD-TYPE     46     81     36     75     20
D34V6, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          18                            46
  CLUS_2                          25                            81
  CLUS_3                          54                            36
  CLUS_4                          32                            75
  CLUS_5                          11                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      137    169     31
  DEL PEAK  5(4P16.3) WILD-TYPE    406    129    201
D34V7, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         137                           406
  CLUS_2                         169                           129
  CLUS_3                          31                           201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       49     67     57     24    112     28
  DEL PEAK  5(4P16.3) WILD-TYPE    170     97    249    117     71     32
D34V8, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          49                           170
  CLUS_2                          67                            97
  CLUS_3                          57                           249
  CLUS_4                          24                           117
  CLUS_5                         112                            71
  CLUS_6                          28                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      167     47    114
  DEL PEAK  5(4P16.3) WILD-TYPE    164    206    362
D34V9, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         167                           164
  CLUS_2                          47                           206
  CLUS_3                         114                           362
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4P16.3) MUTATED       70     67     53     38     16     84
  DEL PEAK  5(4P16.3) WILD-TYPE    161     93    269     89     70     50
D34V10, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          70                           161
  CLUS_2                          67                            93
  CLUS_3                          53                           269
  CLUS_4                          38                            89
  CLUS_5                          16                            70
  CLUS_6                          84                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4P16.3) MUTATED       48     83     21     27     23
  DEL PEAK  5(4P16.3) WILD-TYPE    132     56     78     84    110
D34V11, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          48                           132
  CLUS_2                          83                            56
  CLUS_3                          21                            78
  CLUS_4                          27                            84
  CLUS_5                          23                           110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4P16.3) MUTATED      115     54     33
  DEL PEAK  5(4P16.3) WILD-TYPE    190    193     77
D34V12, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         115                           190
  CLUS_2                          54                           193
  CLUS_3                          33                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED        6      9     25     54     24     34
  DEL PEAK  6(4Q35.1) WILD-TYPE     15     27     94     42     85     38
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  6(4Q35.1) MUTATED        9      9
  DEL PEAK  6(4Q35.1) WILD-TYPE     11     31
D35V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           9                            27
  CLUS_3                          25                            94
  CLUS_4                          54                            42
  CLUS_5                          24                            85
  CLUS_6                          34                            38
  CLUS_7                           9                            11
  CLUS_8                           9                            31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       25     31     52     49     13
  DEL PEAK  6(4Q35.1) WILD-TYPE     76    121     62     39     45
D35V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          25                            76
  CLUS_2                          31                           121
  CLUS_3                          52                            62
  CLUS_4                          49                            39
  CLUS_5                          13                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       65     53     49    164     14
  DEL PEAK  6(4Q35.1) WILD-TYPE    195    359     44    101     35
D35V3, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          65                           195
  CLUS_2                          53                           359
  CLUS_3                          49                            44
  CLUS_4                         164                           101
  CLUS_5                          14                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       82     38     41     19     38
  DEL PEAK  6(4Q35.1) WILD-TYPE     50    159    136     69     90
D35V4, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          82                            50
  CLUS_2                          38                           159
  CLUS_3                          41                           136
  CLUS_4                          19                            69
  CLUS_5                          38                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED       80     33     27
  DEL PEAK  6(4Q35.1) WILD-TYPE     69     99     90
D35V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          80                            69
  CLUS_2                          33                            99
  CLUS_3                          27                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       15     26     54     34     11
  DEL PEAK  6(4Q35.1) WILD-TYPE     49     80     36     73     20
D35V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          26                            80
  CLUS_3                          54                            36
  CLUS_4                          34                            73
  CLUS_5                          11                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED      146    166     31
  DEL PEAK  6(4Q35.1) WILD-TYPE    397    132    201
D35V7, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                         146                           397
  CLUS_2                         166                           132
  CLUS_3                          31                           201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED       44     68     65     27    116     23
  DEL PEAK  6(4Q35.1) WILD-TYPE    175     96    241    114     67     37
D35V8, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          44                           175
  CLUS_2                          68                            96
  CLUS_3                          65                           241
  CLUS_4                          27                           114
  CLUS_5                         116                            67
  CLUS_6                          23                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED      167     52    114
  DEL PEAK  6(4Q35.1) WILD-TYPE    164    201    362
D35V9, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                         167                           164
  CLUS_2                          52                           201
  CLUS_3                         114                           362
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q35.1) MUTATED       65     69     54     43     15     87
  DEL PEAK  6(4Q35.1) WILD-TYPE    166     91    268     84     71     47
D35V10, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          65                           166
  CLUS_2                          69                            91
  CLUS_3                          54                           268
  CLUS_4                          43                            84
  CLUS_5                          15                            71
  CLUS_6                          87                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q35.1) MUTATED       50     86     23     26     22
  DEL PEAK  6(4Q35.1) WILD-TYPE    130     53     76     85    111
D35V11, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          50                           130
  CLUS_2                          86                            53
  CLUS_3                          23                            76
  CLUS_4                          26                            85
  CLUS_5                          22                           111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q35.1) MUTATED      116     57     34
  DEL PEAK  6(4Q35.1) WILD-TYPE    189    190     76
D35V12, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                         116                           189
  CLUS_2                          57                           190
  CLUS_3                          34                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED        3      5     19     69      7     26
  DEL PEAK  7(5Q11.2) WILD-TYPE     18     31    100     27    102     46
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  7(5Q11.2) MUTATED        3      4
  DEL PEAK  7(5Q11.2) WILD-TYPE     17     36
D36V1, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                           5                            31
  CLUS_3                          19                           100
  CLUS_4                          69                            27
  CLUS_5                           7                           102
  CLUS_6                          26                            46
  CLUS_7                           3                            17
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       18     15     38     63      2
  DEL PEAK  7(5Q11.2) WILD-TYPE     83    137     76     25     56
D36V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          18                            83
  CLUS_2                          15                           137
  CLUS_3                          38                            76
  CLUS_4                          63                            25
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       39     32      8    189     12
  DEL PEAK  7(5Q11.2) WILD-TYPE    221    380     85     76     37
D36V3, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          39                           221
  CLUS_2                          32                           380
  CLUS_3                           8                            85
  CLUS_4                         189                            76
  CLUS_5                          12                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       99     16     30      9     32
  DEL PEAK  7(5Q11.2) WILD-TYPE     33    181    147     79     96
D36V4, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          99                            33
  CLUS_2                          16                           181
  CLUS_3                          30                           147
  CLUS_4                           9                            79
  CLUS_5                          32                            96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED       80     12     23
  DEL PEAK  7(5Q11.2) WILD-TYPE     69    120     94
D36V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          80                            69
  CLUS_2                          12                           120
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED        4     14     64     23     10
  DEL PEAK  7(5Q11.2) WILD-TYPE     60     92     26     84     21
D36V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                          14                            92
  CLUS_3                          64                            26
  CLUS_4                          23                            84
  CLUS_5                          10                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED       81    181     16
  DEL PEAK  7(5Q11.2) WILD-TYPE    462    117    216
D36V7, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          81                           462
  CLUS_2                         181                           117
  CLUS_3                          16                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       35     44     31      5    137     26
  DEL PEAK  7(5Q11.2) WILD-TYPE    184    120    275    136     46     34
D36V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          35                           184
  CLUS_2                          44                           120
  CLUS_3                          31                           275
  CLUS_4                           5                           136
  CLUS_5                         137                            46
  CLUS_6                          26                            34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED      184     29     55
  DEL PEAK  7(5Q11.2) WILD-TYPE    147    224    421
D36V9, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         184                           147
  CLUS_2                          29                           224
  CLUS_3                          55                           421
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q11.2) MUTATED       53     64     26     11      8    106
  DEL PEAK  7(5Q11.2) WILD-TYPE    178     96    296    116     78     28
D36V10, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          53                           178
  CLUS_2                          64                            96
  CLUS_3                          26                           296
  CLUS_4                          11                           116
  CLUS_5                           8                            78
  CLUS_6                         106                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q11.2) MUTATED       26     98     12     15     20
  DEL PEAK  7(5Q11.2) WILD-TYPE    154     41     87     96    113
D36V11, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          26                           154
  CLUS_2                          98                            41
  CLUS_3                          12                            87
  CLUS_4                          15                            96
  CLUS_5                          20                           113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q11.2) MUTATED      125     31     15
  DEL PEAK  7(5Q11.2) WILD-TYPE    180    216     95
D36V12, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         125                           180
  CLUS_2                          31                           216
  CLUS_3                          15                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(5Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED        2      5     19     71      7     24
  DEL PEAK  8(5Q21.3) WILD-TYPE     19     31    100     25    102     48
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(5Q21.3) MUTATED        5      2
  DEL PEAK  8(5Q21.3) WILD-TYPE     15     38
D37V1, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                           2                            19
  CLUS_2                           5                            31
  CLUS_3                          19                           100
  CLUS_4                          71                            25
  CLUS_5                           7                           102
  CLUS_6                          24                            48
  CLUS_7                           5                            15
  CLUS_8                           2                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       18     13     36     66      2
  DEL PEAK  8(5Q21.3) WILD-TYPE     83    139     78     22     56
D37V2, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          18                            83
  CLUS_2                          13                           139
  CLUS_3                          36                            78
  CLUS_4                          66                            22
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       38     23      8    193     10
  DEL PEAK  8(5Q21.3) WILD-TYPE    222    389     85     72     39
D37V3, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          38                           222
  CLUS_2                          23                           389
  CLUS_3                           8                            85
  CLUS_4                         193                            72
  CLUS_5                          10                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED      106     10     28      6     30
  DEL PEAK  8(5Q21.3) WILD-TYPE     26    187    149     82     98
D37V4, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         106                            26
  CLUS_2                          10                           187
  CLUS_3                          28                           149
  CLUS_4                           6                            82
  CLUS_5                          30                            98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED       78     12     23
  DEL PEAK  8(5Q21.3) WILD-TYPE     71    120     94
D37V5, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          78                            71
  CLUS_2                          12                           120
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED        5     16     62     21      9
  DEL PEAK  8(5Q21.3) WILD-TYPE     59     90     28     86     22
D37V6, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                          16                            90
  CLUS_3                          62                            28
  CLUS_4                          21                            86
  CLUS_5                           9                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED       71    188     11
  DEL PEAK  8(5Q21.3) WILD-TYPE    472    110    221
D37V7, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          71                           472
  CLUS_2                         188                           110
  CLUS_3                          11                           221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       31     40     29      4    142     24
  DEL PEAK  8(5Q21.3) WILD-TYPE    188    124    277    137     41     36
D37V8, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          31                           188
  CLUS_2                          40                           124
  CLUS_3                          29                           277
  CLUS_4                           4                           137
  CLUS_5                         142                            41
  CLUS_6                          24                            36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED      186     24     52
  DEL PEAK  8(5Q21.3) WILD-TYPE    145    229    424
D37V9, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         186                           145
  CLUS_2                          24                           229
  CLUS_3                          52                           424
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q21.3) MUTATED       52     67     20      8      6    109
  DEL PEAK  8(5Q21.3) WILD-TYPE    179     93    302    119     80     25
D37V10, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          52                           179
  CLUS_2                          67                            93
  CLUS_3                          20                           302
  CLUS_4                           8                           119
  CLUS_5                           6                            80
  CLUS_6                         109                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q21.3) MUTATED       22    101     12     12     18
  DEL PEAK  8(5Q21.3) WILD-TYPE    158     38     87     99    115
D37V11, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          22                           158
  CLUS_2                         101                            38
  CLUS_3                          12                            87
  CLUS_4                          12                            99
  CLUS_5                          18                           115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q21.3) MUTATED      124     30     11
  DEL PEAK  8(5Q21.3) WILD-TYPE    181    217     99
D37V12, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         124                           181
  CLUS_2                          30                           217
  CLUS_3                          11                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED        5      7     28     20     15      9
  DEL PEAK  9(6P25.3) WILD-TYPE     16     29     91     76     94     63
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(6P25.3) MUTATED        2      8
  DEL PEAK  9(6P25.3) WILD-TYPE     18     32
D38V1, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           7                            29
  CLUS_3                          28                            91
  CLUS_4                          20                            76
  CLUS_5                          15                            94
  CLUS_6                           9                            63
  CLUS_7                           2                            18
  CLUS_8                           8                            32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       22     28     19     17      8
  DEL PEAK  9(6P25.3) WILD-TYPE     79    124     95     71     50
D38V2, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          22                            79
  CLUS_2                          28                           124
  CLUS_3                          19                            95
  CLUS_4                          17                            71
  CLUS_5                           8                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       78     42     17     57     10
  DEL PEAK  9(6P25.3) WILD-TYPE    182    370     76    208     39
D38V3, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          78                           182
  CLUS_2                          42                           370
  CLUS_3                          17                            76
  CLUS_4                          57                           208
  CLUS_5                          10                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       34     32     46     12     16
  DEL PEAK  9(6P25.3) WILD-TYPE     98    165    131     76    112
D38V4, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          34                            98
  CLUS_2                          32                           165
  CLUS_3                          46                           131
  CLUS_4                          12                            76
  CLUS_5                          16                           112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       35     24     19
  DEL PEAK  9(6P25.3) WILD-TYPE    114    108     98
D38V5, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          35                           114
  CLUS_2                          24                           108
  CLUS_3                          19                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED        9     15     18     30      6
  DEL PEAK  9(6P25.3) WILD-TYPE     55     91     72     77     25
D38V6, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                           9                            55
  CLUS_2                          15                            91
  CLUS_3                          18                            72
  CLUS_4                          30                            77
  CLUS_5                           6                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED      118     61     24
  DEL PEAK  9(6P25.3) WILD-TYPE    425    237    208
D38V7, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                         118                           425
  CLUS_2                          61                           237
  CLUS_3                          24                           208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       54     34     42     23     41      9
  DEL PEAK  9(6P25.3) WILD-TYPE    165    130    264    118    142     51
D38V8, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          54                           165
  CLUS_2                          34                           130
  CLUS_3                          42                           264
  CLUS_4                          23                           118
  CLUS_5                          41                           142
  CLUS_6                           9                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       73     31     96
  DEL PEAK  9(6P25.3) WILD-TYPE    258    222    380
D38V9, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          73                           258
  CLUS_2                          31                           222
  CLUS_3                          96                           380
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P25.3) MUTATED       46     36     40     30     16     32
  DEL PEAK  9(6P25.3) WILD-TYPE    185    124    282     97     70    102
D38V10, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          46                           185
  CLUS_2                          36                           124
  CLUS_3                          40                           282
  CLUS_4                          30                            97
  CLUS_5                          16                            70
  CLUS_6                          32                           102
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P25.3) MUTATED       45     30     16     21     22
  DEL PEAK  9(6P25.3) WILD-TYPE    135    109     83     90    111
D38V11, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          45                           135
  CLUS_2                          30                           109
  CLUS_3                          16                            83
  CLUS_4                          21                            90
  CLUS_5                          22                           111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P25.3) MUTATED       69     41     24
  DEL PEAK  9(6P25.3) WILD-TYPE    236    206     86
D38V12, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          69                           236
  CLUS_2                          41                           206
  CLUS_3                          24                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(6Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q15) MUTATED        6     13     63     20     24     29      4
  DEL PEAK 10(6Q15) WILD-TYPE     15     23     56     76     85     43     16
                             vv
clus                          CLUS_8
  DEL PEAK 10(6Q15) MUTATED       16
  DEL PEAK 10(6Q15) WILD-TYPE     24
D39V1, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                         6                          15
  CLUS_2                        13                          23
  CLUS_3                        63                          56
  CLUS_4                        20                          76
  CLUS_5                        24                          85
  CLUS_6                        29                          43
  CLUS_7                         4                          16
  CLUS_8                        16                          24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       50     51     42     18     14
  DEL PEAK 10(6Q15) WILD-TYPE     51    101     72     70     44
D39V2, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        50                          51
  CLUS_2                        51                         101
  CLUS_3                        42                          72
  CLUS_4                        18                          70
  CLUS_5                        14                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED      161     91     27     53     26
  DEL PEAK 10(6Q15) WILD-TYPE     99    321     66    212     23
D39V3, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       161                          99
  CLUS_2                        91                         321
  CLUS_3                        27                          66
  CLUS_4                        53                         212
  CLUS_5                        26                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       26     81     73     21     25
  DEL PEAK 10(6Q15) WILD-TYPE    106    116    104     67    103
D39V4, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        26                         106
  CLUS_2                        81                         116
  CLUS_3                        73                         104
  CLUS_4                        21                          67
  CLUS_5                        25                         103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       46     50     41
  DEL PEAK 10(6Q15) WILD-TYPE    103     82     76
D39V5, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        46                         103
  CLUS_2                        50                          82
  CLUS_3                        41                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       17     34     24     51     11
  DEL PEAK 10(6Q15) WILD-TYPE     47     72     66     56     20
D39V6, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        17                          47
  CLUS_2                        34                          72
  CLUS_3                        24                          66
  CLUS_4                        51                          56
  CLUS_5                        11                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED      221     68     66
  DEL PEAK 10(6Q15) WILD-TYPE    322    230    166
D39V7, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       221                         322
  CLUS_2                        68                         230
  CLUS_3                        66                         166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED      109     65     94     37     30     20
  DEL PEAK 10(6Q15) WILD-TYPE    110     99    212    104    153     40
D39V8, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       109                         110
  CLUS_2                        65                          99
  CLUS_3                        94                         212
  CLUS_4                        37                         104
  CLUS_5                        30                         153
  CLUS_6                        20                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED       99     76    180
  DEL PEAK 10(6Q15) WILD-TYPE    232    177    296
D39V9, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        99                         232
  CLUS_2                        76                         177
  CLUS_3                       180                         296
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q15) MUTATED       90     49    100     50     43     23
  DEL PEAK 10(6Q15) WILD-TYPE    141    111    222     77     43    111
D39V10, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        90                         141
  CLUS_2                        49                         111
  CLUS_3                       100                         222
  CLUS_4                        50                          77
  CLUS_5                        43                          43
  CLUS_6                        23                         111
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q15) MUTATED       76     25     33     38     47
  DEL PEAK 10(6Q15) WILD-TYPE    104    114     66     73     86
D39V11, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        76                         104
  CLUS_2                        25                         114
  CLUS_3                        33                          66
  CLUS_4                        38                          73
  CLUS_5                        47                          86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q15) MUTATED      100     78     41
  DEL PEAK 10(6Q15) WILD-TYPE    205    169     69
D39V12, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       100                         205
  CLUS_2                        78                         169
  CLUS_3                        41                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q27) MUTATED        9     13     57     34     25     27      7
  DEL PEAK 11(6Q27) WILD-TYPE     12     23     62     62     84     45     13
                             vv
clus                          CLUS_8
  DEL PEAK 11(6Q27) MUTATED       14
  DEL PEAK 11(6Q27) WILD-TYPE     26
D40V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         9                          12
  CLUS_2                        13                          23
  CLUS_3                        57                          62
  CLUS_4                        34                          62
  CLUS_5                        25                          84
  CLUS_6                        27                          45
  CLUS_7                         7                          13
  CLUS_8                        14                          26
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       48     47     46     32     13
  DEL PEAK 11(6Q27) WILD-TYPE     53    105     68     56     45
D40V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        48                          53
  CLUS_2                        47                         105
  CLUS_3                        46                          68
  CLUS_4                        32                          56
  CLUS_5                        13                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED      135     97     26     89     28
  DEL PEAK 11(6Q27) WILD-TYPE    125    315     67    176     21
D40V3, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       135                         125
  CLUS_2                        97                         315
  CLUS_3                        26                          67
  CLUS_4                        89                         176
  CLUS_5                        28                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       53     69     65     22     39
  DEL PEAK 11(6Q27) WILD-TYPE     79    128    112     66     89
D40V4, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        53                          79
  CLUS_2                        69                         128
  CLUS_3                        65                         112
  CLUS_4                        22                          66
  CLUS_5                        39                          89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED       66     45     36
  DEL PEAK 11(6Q27) WILD-TYPE     83     87     81
D40V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        66                          83
  CLUS_2                        45                          87
  CLUS_3                        36                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       19     31     34     50     13
  DEL PEAK 11(6Q27) WILD-TYPE     45     75     56     57     18
D40V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        19                          45
  CLUS_2                        31                          75
  CLUS_3                        34                          56
  CLUS_4                        50                          57
  CLUS_5                        13                          18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED      192    112     67
  DEL PEAK 11(6Q27) WILD-TYPE    351    186    165
D40V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       192                         351
  CLUS_2                       112                         186
  CLUS_3                        67                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED       91     59    100     30     63     28
  DEL PEAK 11(6Q27) WILD-TYPE    128    105    206    111    120     32
D40V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        91                         128
  CLUS_2                        59                         105
  CLUS_3                       100                         206
  CLUS_4                        30                         111
  CLUS_5                        63                         120
  CLUS_6                        28                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED      131     77    161
  DEL PEAK 11(6Q27) WILD-TYPE    200    176    315
D40V9, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       131                         200
  CLUS_2                        77                         176
  CLUS_3                       161                         315
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q27) MUTATED       80     63     94     49     37     46
  DEL PEAK 11(6Q27) WILD-TYPE    151     97    228     78     49     88
D40V10, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        80                         151
  CLUS_2                        63                          97
  CLUS_3                        94                         228
  CLUS_4                        49                          78
  CLUS_5                        37                          49
  CLUS_6                        46                          88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q27) MUTATED       65     51     29     37     43
  DEL PEAK 11(6Q27) WILD-TYPE    115     88     70     74     90
D40V11, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        65                         115
  CLUS_2                        51                          88
  CLUS_3                        29                          70
  CLUS_4                        37                          74
  CLUS_5                        43                          90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q27) MUTATED      108     78     39
  DEL PEAK 11(6Q27) WILD-TYPE    197    169     71
D40V12, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       108                         197
  CLUS_2                        78                         169
  CLUS_3                        39                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED        4      3     24     25      2     12
  DEL PEAK 12(7P22.3) WILD-TYPE     17     33     95     71    107     60
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(7P22.3) MUTATED        2      4
  DEL PEAK 12(7P22.3) WILD-TYPE     18     36
D41V1, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          24                            95
  CLUS_4                          25                            71
  CLUS_5                           2                           107
  CLUS_6                          12                            60
  CLUS_7                           2                            18
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       20      8     22     24      2
  DEL PEAK 12(7P22.3) WILD-TYPE     81    144     92     64     56
D41V2, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          20                            81
  CLUS_2                           8                           144
  CLUS_3                          22                            92
  CLUS_4                          24                            64
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       53     12      3     65      3
  DEL PEAK 12(7P22.3) WILD-TYPE    207    400     90    200     46
D41V3, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          53                           207
  CLUS_2                          12                           400
  CLUS_3                           3                            90
  CLUS_4                          65                           200
  CLUS_5                           3                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       30     12     25      6      4
  DEL PEAK 12(7P22.3) WILD-TYPE    102    185    152     82    124
D41V4, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          30                           102
  CLUS_2                          12                           185
  CLUS_3                          25                           152
  CLUS_4                           6                            82
  CLUS_5                           4                           124
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       33     13     10
  DEL PEAK 12(7P22.3) WILD-TYPE    116    119    107
D41V5, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          33                           116
  CLUS_2                          13                           119
  CLUS_3                          10                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED        5      8     23     16      4
  DEL PEAK 12(7P22.3) WILD-TYPE     59     98     67     91     27
D41V6, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           8                            98
  CLUS_3                          23                            67
  CLUS_4                          16                            91
  CLUS_5                           4                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       63     67      4
  DEL PEAK 12(7P22.3) WILD-TYPE    480    231    228
D41V7, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          63                           480
  CLUS_2                          67                           231
  CLUS_3                           4                           228
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       32     28     13      8     48      5
  DEL PEAK 12(7P22.3) WILD-TYPE    187    136    293    133    135     55
D41V8, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          32                           187
  CLUS_2                          28                           136
  CLUS_3                          13                           293
  CLUS_4                           8                           133
  CLUS_5                          48                           135
  CLUS_6                           5                            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       71      7     54
  DEL PEAK 12(7P22.3) WILD-TYPE    260    246    422
D41V9, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          71                           260
  CLUS_2                           7                           246
  CLUS_3                          54                           422
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(7P22.3) MUTATED       42     24      5     14      8     39
  DEL PEAK 12(7P22.3) WILD-TYPE    189    136    317    113     78     95
D41V10, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          42                           189
  CLUS_2                          24                           136
  CLUS_3                           5                           317
  CLUS_4                          14                           113
  CLUS_5                           8                            78
  CLUS_6                          39                            95
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(7P22.3) MUTATED       18     34      6      6     11
  DEL PEAK 12(7P22.3) WILD-TYPE    162    105     93    105    122
D41V11, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          18                           162
  CLUS_2                          34                           105
  CLUS_3                           6                            93
  CLUS_4                           6                           105
  CLUS_5                          11                           122
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(7P22.3) MUTATED       53     16      6
  DEL PEAK 12(7P22.3) WILD-TYPE    252    231    104
D41V12, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          53                           252
  CLUS_2                          16                           231
  CLUS_3                           6                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED        6      7     22     21     10     26
  DEL PEAK 13(7Q36.1) WILD-TYPE     15     29     97     75     99     46
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 13(7Q36.1) MUTATED        4      6
  DEL PEAK 13(7Q36.1) WILD-TYPE     16     34
D42V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           7                            29
  CLUS_3                          22                            97
  CLUS_4                          21                            75
  CLUS_5                          10                            99
  CLUS_6                          26                            46
  CLUS_7                           4                            16
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       16     17     45     17      7
  DEL PEAK 13(7Q36.1) WILD-TYPE     85    135     69     71     51
D42V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          16                            85
  CLUS_2                          17                           135
  CLUS_3                          45                            69
  CLUS_4                          17                            71
  CLUS_5                           7                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       66     38     14     74      7
  DEL PEAK 13(7Q36.1) WILD-TYPE    194    374     79    191     42
D42V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          66                           194
  CLUS_2                          38                           374
  CLUS_3                          14                            79
  CLUS_4                          74                           191
  CLUS_5                           7                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       30     22     39     18     13
  DEL PEAK 13(7Q36.1) WILD-TYPE    102    175    138     70    115
D42V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          30                           102
  CLUS_2                          22                           175
  CLUS_3                          39                           138
  CLUS_4                          18                            70
  CLUS_5                          13                           115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       34     22     19
  DEL PEAK 13(7Q36.1) WILD-TYPE    115    110     98
D42V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          34                           115
  CLUS_2                          22                           110
  CLUS_3                          19                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED        8     15     19     21     12
  DEL PEAK 13(7Q36.1) WILD-TYPE     56     91     71     86     19
D42V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          15                            91
  CLUS_3                          19                            71
  CLUS_4                          21                            86
  CLUS_5                          12                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED      100     77     20
  DEL PEAK 13(7Q36.1) WILD-TYPE    443    221    212
D42V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                         100                           443
  CLUS_2                          77                           221
  CLUS_3                          20                           212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       44     46     33     16     40     18
  DEL PEAK 13(7Q36.1) WILD-TYPE    175    118    273    125    143     42
D42V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          44                           175
  CLUS_2                          46                           118
  CLUS_3                          33                           273
  CLUS_4                          16                           125
  CLUS_5                          40                           143
  CLUS_6                          18                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       92     20     82
  DEL PEAK 13(7Q36.1) WILD-TYPE    239    233    394
D42V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          92                           239
  CLUS_2                          20                           233
  CLUS_3                          82                           394
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.1) MUTATED       54     46     24     24     15     31
  DEL PEAK 13(7Q36.1) WILD-TYPE    177    114    298    103     71    103
D42V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          54                           177
  CLUS_2                          46                           114
  CLUS_3                          24                           298
  CLUS_4                          24                           103
  CLUS_5                          15                            71
  CLUS_6                          31                           103
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.1) MUTATED       41     39      9     11     17
  DEL PEAK 13(7Q36.1) WILD-TYPE    139    100     90    100    116
D42V11, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          41                           139
  CLUS_2                          39                           100
  CLUS_3                           9                            90
  CLUS_4                          11                           100
  CLUS_5                          17                           116
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.1) MUTATED       76     21     20
  DEL PEAK 13(7Q36.1) WILD-TYPE    229    226     90
D42V12, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          76                           229
  CLUS_2                          21                           226
  CLUS_3                          20                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED       12     15     78     64     29     47
  DEL PEAK 14(8P23.2) WILD-TYPE      9     21     41     32     80     25
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 14(8P23.2) MUTATED       13     18
  DEL PEAK 14(8P23.2) WILD-TYPE      7     22
D43V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          12                             9
  CLUS_2                          15                            21
  CLUS_3                          78                            41
  CLUS_4                          64                            32
  CLUS_5                          29                            80
  CLUS_6                          47                            25
  CLUS_7                          13                             7
  CLUS_8                          18                            22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       67     59     78     57     15
  DEL PEAK 14(8P23.2) WILD-TYPE     34     93     36     31     43
D43V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          67                            34
  CLUS_2                          59                            93
  CLUS_3                          78                            36
  CLUS_4                          57                            31
  CLUS_5                          15                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED      175    133     22    187     40
  DEL PEAK 14(8P23.2) WILD-TYPE     85    279     71     78      9
D43V3, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         175                            85
  CLUS_2                         133                           279
  CLUS_3                          22                            71
  CLUS_4                         187                            78
  CLUS_5                          40                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       87     81    102     26     63
  DEL PEAK 14(8P23.2) WILD-TYPE     45    116     75     62     65
D43V4, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          87                            45
  CLUS_2                          81                           116
  CLUS_3                         102                            75
  CLUS_4                          26                            62
  CLUS_5                          63                            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED       96     61     68
  DEL PEAK 14(8P23.2) WILD-TYPE     53     71     49
D43V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          96                            53
  CLUS_2                          61                            71
  CLUS_3                          68                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED       22     57     58     66     22
  DEL PEAK 14(8P23.2) WILD-TYPE     42     49     32     41      9
D43V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                          57                            49
  CLUS_3                          58                            32
  CLUS_4                          66                            41
  CLUS_5                          22                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      283    193     77
  DEL PEAK 14(8P23.2) WILD-TYPE    260    105    155
D43V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         283                           260
  CLUS_2                         193                           105
  CLUS_3                          77                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      138    110    122     23    113     47
  DEL PEAK 14(8P23.2) WILD-TYPE     81     54    184    118     70     13
D43V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         138                            81
  CLUS_2                         110                            54
  CLUS_3                         122                           184
  CLUS_4                          23                           118
  CLUS_5                         113                            70
  CLUS_6                          47                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      215    104    226
  DEL PEAK 14(8P23.2) WILD-TYPE    116    149    250
D43V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         215                           116
  CLUS_2                         104                           149
  CLUS_3                         226                           250
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.2) MUTATED      131    110    127     51     43     83
  DEL PEAK 14(8P23.2) WILD-TYPE    100     50    195     76     43     51
D43V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         131                           100
  CLUS_2                         110                            50
  CLUS_3                         127                           195
  CLUS_4                          51                            76
  CLUS_5                          43                            43
  CLUS_6                          83                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.2) MUTATED      100     92     43     39     58
  DEL PEAK 14(8P23.2) WILD-TYPE     80     47     56     72     75
D43V11, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         100                            80
  CLUS_2                          92                            47
  CLUS_3                          43                            56
  CLUS_4                          39                            72
  CLUS_5                          58                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.2) MUTATED      187    105     40
  DEL PEAK 14(8P23.2) WILD-TYPE    118    142     70
D43V12, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         187                           118
  CLUS_2                         105                           142
  CLUS_3                          40                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED        4      3     22     24      8     26
  DEL PEAK 15(8P11.21) WILD-TYPE     17     33     97     72    101     46
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 15(8P11.21) MUTATED        7      7
  DEL PEAK 15(8P11.21) WILD-TYPE     13     33
D44V1, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                            4                             17
  CLUS_2                            3                             33
  CLUS_3                           22                             97
  CLUS_4                           24                             72
  CLUS_5                            8                            101
  CLUS_6                           26                             46
  CLUS_7                            7                             13
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       20     18     37     21      5
  DEL PEAK 15(8P11.21) WILD-TYPE     81    134     77     67     53
D44V2, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           20                             81
  CLUS_2                           18                            134
  CLUS_3                           37                             77
  CLUS_4                           21                             67
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       56     44     14     85      1
  DEL PEAK 15(8P11.21) WILD-TYPE    204    368     79    180     48
D44V3, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           56                            204
  CLUS_2                           44                            368
  CLUS_3                           14                             79
  CLUS_4                           85                            180
  CLUS_5                            1                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       30     20     36     10     24
  DEL PEAK 15(8P11.21) WILD-TYPE    102    177    141     78    104
D44V4, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           30                            102
  CLUS_2                           20                            177
  CLUS_3                           36                            141
  CLUS_4                           10                             78
  CLUS_5                           24                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       42     19     25
  DEL PEAK 15(8P11.21) WILD-TYPE    107    113     92
D44V5, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           42                            107
  CLUS_2                           19                            113
  CLUS_3                           25                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED        5     21     21     23     16
  DEL PEAK 15(8P11.21) WILD-TYPE     59     85     69     84     15
D44V6, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           21                             85
  CLUS_3                           21                             69
  CLUS_4                           23                             84
  CLUS_5                           16                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       97     78     25
  DEL PEAK 15(8P11.21) WILD-TYPE    446    220    207
D44V7, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           97                            446
  CLUS_2                           78                            220
  CLUS_3                           25                            207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       37     54     38     10     35     26
  DEL PEAK 15(8P11.21) WILD-TYPE    182    110    268    131    148     34
D44V8, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           37                            182
  CLUS_2                           54                            110
  CLUS_3                           38                            268
  CLUS_4                           10                            131
  CLUS_5                           35                            148
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       87     27     84
  DEL PEAK 15(8P11.21) WILD-TYPE    244    226    392
D44V9, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           87                            244
  CLUS_2                           27                            226
  CLUS_3                           84                            392
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P11.21) MUTATED       52     61     29     23     11     22
  DEL PEAK 15(8P11.21) WILD-TYPE    179     99    293    104     75    112
D44V10, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           52                            179
  CLUS_2                           61                             99
  CLUS_3                           29                            293
  CLUS_4                           23                            104
  CLUS_5                           11                             75
  CLUS_6                           22                            112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P11.21) MUTATED       48     32     15     14     16
  DEL PEAK 15(8P11.21) WILD-TYPE    132    107     84     97    117
D44V11, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           48                            132
  CLUS_2                           32                            107
  CLUS_3                           15                             84
  CLUS_4                           14                             97
  CLUS_5                           16                            117
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P11.21) MUTATED       77     31     17
  DEL PEAK 15(8P11.21) WILD-TYPE    228    216     93
D44V12, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           77                            228
  CLUS_2                           31                            216
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(9P23) MUTATED        9     15     57     21     22     34     10
  DEL PEAK 16(9P23) WILD-TYPE     12     21     62     75     87     38     10
                             vv
clus                          CLUS_8
  DEL PEAK 16(9P23) MUTATED        5
  DEL PEAK 16(9P23) WILD-TYPE     35
D45V1, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                         9                          12
  CLUS_2                        15                          21
  CLUS_3                        57                          62
  CLUS_4                        21                          75
  CLUS_5                        22                          87
  CLUS_6                        34                          38
  CLUS_7                        10                          10
  CLUS_8                         5                          35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       49     36     61     17     10
  DEL PEAK 16(9P23) WILD-TYPE     52    116     53     71     48
D45V2, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        49                          52
  CLUS_2                        36                         116
  CLUS_3                        61                          53
  CLUS_4                        17                          71
  CLUS_5                        10                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED      159     46     15     93     11
  DEL PEAK 16(9P23) WILD-TYPE    101    366     78    172     38
D45V3, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       159                         101
  CLUS_2                        46                         366
  CLUS_3                        15                          78
  CLUS_4                        93                         172
  CLUS_5                        11                          38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       37     43     90     14     25
  DEL PEAK 16(9P23) WILD-TYPE     95    154     87     74    103
D45V4, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        37                          95
  CLUS_2                        43                         154
  CLUS_3                        90                          87
  CLUS_4                        14                          74
  CLUS_5                        25                         103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       66     42     32
  DEL PEAK 16(9P23) WILD-TYPE     83     90     85
D45V5, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        66                          83
  CLUS_2                        42                          90
  CLUS_3                        32                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       15     31     26     53     15
  DEL PEAK 16(9P23) WILD-TYPE     49     75     64     54     16
D45V6, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        15                          49
  CLUS_2                        31                          75
  CLUS_3                        26                          64
  CLUS_4                        53                          54
  CLUS_5                        15                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED      200     90     34
  DEL PEAK 16(9P23) WILD-TYPE    343    208    198
D45V7, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       200                         343
  CLUS_2                        90                         208
  CLUS_3                        34                         198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED      101     84     60     16     35     28
  DEL PEAK 16(9P23) WILD-TYPE    118     80    246    125    148     32
D45V8, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       101                         118
  CLUS_2                        84                          80
  CLUS_3                        60                         246
  CLUS_4                        16                         125
  CLUS_5                        35                         148
  CLUS_6                        28                          32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED      124     41    152
  DEL PEAK 16(9P23) WILD-TYPE    207    212    324
D45V9, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       124                         207
  CLUS_2                        41                         212
  CLUS_3                       152                         324
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P23) MUTATED      104     76     54     37     24     22
  DEL PEAK 16(9P23) WILD-TYPE    127     84    268     90     62    112
D45V10, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       104                         127
  CLUS_2                        76                          84
  CLUS_3                        54                         268
  CLUS_4                        37                          90
  CLUS_5                        24                          62
  CLUS_6                        22                         112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       74     39     23     20     33
  DEL PEAK 16(9P23) WILD-TYPE    106    100     76     91    100
D45V11, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        74                         106
  CLUS_2                        39                         100
  CLUS_3                        23                          76
  CLUS_4                        20                          91
  CLUS_5                        33                         100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED      112     56     21
  DEL PEAK 16(9P23) WILD-TYPE    193    191     89
D45V12, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                       112                         193
  CLUS_2                        56                         191
  CLUS_3                        21                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED        9     12     62     33     24     38
  DEL PEAK 17(9P21.3) WILD-TYPE     12     24     57     63     85     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 17(9P21.3) MUTATED        8      6
  DEL PEAK 17(9P21.3) WILD-TYPE     12     34
D46V1, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                           9                            12
  CLUS_2                          12                            24
  CLUS_3                          62                            57
  CLUS_4                          33                            63
  CLUS_5                          24                            85
  CLUS_6                          38                            34
  CLUS_7                           8                            12
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       53     34     65     28     12
  DEL PEAK 17(9P21.3) WILD-TYPE     48    118     49     60     46
D46V2, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          53                            48
  CLUS_2                          34                           118
  CLUS_3                          65                            49
  CLUS_4                          28                            60
  CLUS_5                          12                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED      164     52     18    117     12
  DEL PEAK 17(9P21.3) WILD-TYPE     96    360     75    148     37
D46V3, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         164                            96
  CLUS_2                          52                           360
  CLUS_3                          18                            75
  CLUS_4                         117                           148
  CLUS_5                          12                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       51     49     86     14     28
  DEL PEAK 17(9P21.3) WILD-TYPE     81    148     91     74    100
D46V4, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          51                            81
  CLUS_2                          49                           148
  CLUS_3                          86                            91
  CLUS_4                          14                            74
  CLUS_5                          28                           100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       73     44     37
  DEL PEAK 17(9P21.3) WILD-TYPE     76     88     80
D46V5, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          73                            76
  CLUS_2                          44                            88
  CLUS_3                          37                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       17     33     34     53     17
  DEL PEAK 17(9P21.3) WILD-TYPE     47     73     56     54     14
D46V6, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          33                            73
  CLUS_3                          34                            56
  CLUS_4                          53                            54
  CLUS_5                          17                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED      210    117     33
  DEL PEAK 17(9P21.3) WILD-TYPE    333    181    199
D46V7, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         210                           333
  CLUS_2                         117                           181
  CLUS_3                          33                           199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED      104     89     56     21     60     30
  DEL PEAK 17(9P21.3) WILD-TYPE    115     75    250    120    123     30
D46V8, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         104                           115
  CLUS_2                          89                            75
  CLUS_3                          56                           250
  CLUS_4                          21                           120
  CLUS_5                          60                           123
  CLUS_6                          30                            30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED      146     45    162
  DEL PEAK 17(9P21.3) WILD-TYPE    185    208    314
D46V9, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         146                           185
  CLUS_2                          45                           208
  CLUS_3                         162                           314
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P21.3) MUTATED      108     84     53     41     28     39
  DEL PEAK 17(9P21.3) WILD-TYPE    123     76    269     86     58     95
D46V10, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         108                           123
  CLUS_2                          84                            76
  CLUS_3                          53                           269
  CLUS_4                          41                            86
  CLUS_5                          28                            58
  CLUS_6                          39                            95
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       76     54     24     25     30
  DEL PEAK 17(9P21.3) WILD-TYPE    104     85     75     86    103
D46V11, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          76                           104
  CLUS_2                          54                            85
  CLUS_3                          24                            75
  CLUS_4                          25                            86
  CLUS_5                          30                           103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED      128     58     23
  DEL PEAK 17(9P21.3) WILD-TYPE    177    189     87
D46V12, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                         128                           177
  CLUS_2                          58                           189
  CLUS_3                          23                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED        5      6     42     41     24     27
  DEL PEAK 18(9Q21.11) WILD-TYPE     16     30     77     55     85     45
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(9Q21.11) MUTATED        7      5
  DEL PEAK 18(9Q21.11) WILD-TYPE     13     35
D47V1, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            6                             30
  CLUS_3                           42                             77
  CLUS_4                           41                             55
  CLUS_5                           24                             85
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            5                             35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       37     25     50     35     10
  DEL PEAK 18(9Q21.11) WILD-TYPE     64    127     64     53     48
D47V2, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           25                            127
  CLUS_3                           50                             64
  CLUS_4                           35                             53
  CLUS_5                           10                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED      110     43     18    108     14
  DEL PEAK 18(9Q21.11) WILD-TYPE    150    369     75    157     35
D47V3, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          110                            150
  CLUS_2                           43                            369
  CLUS_3                           18                             75
  CLUS_4                          108                            157
  CLUS_5                           14                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       55     40     54     12     26
  DEL PEAK 18(9Q21.11) WILD-TYPE     77    157    123     76    102
D47V4, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           55                             77
  CLUS_2                           40                            157
  CLUS_3                           54                            123
  CLUS_4                           12                             76
  CLUS_5                           26                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED       69     33     22
  DEL PEAK 18(9Q21.11) WILD-TYPE     80     99     95
D47V5, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           69                             80
  CLUS_2                           33                             99
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       15     22     38     37     12
  DEL PEAK 18(9Q21.11) WILD-TYPE     49     84     52     70     19
D47V6, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           22                             84
  CLUS_3                           38                             52
  CLUS_4                           37                             70
  CLUS_5                           12                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED      158    107     28
  DEL PEAK 18(9Q21.11) WILD-TYPE    385    191    204
D47V7, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          158                            385
  CLUS_2                          107                            191
  CLUS_3                           28                            204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       79     60     48     15     69     22
  DEL PEAK 18(9Q21.11) WILD-TYPE    140    104    258    126    114     38
D47V8, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           79                            140
  CLUS_2                           60                            104
  CLUS_3                           48                            258
  CLUS_4                           15                            126
  CLUS_5                           69                            114
  CLUS_6                           22                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED      139     33    114
  DEL PEAK 18(9Q21.11) WILD-TYPE    192    220    362
D47V9, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          139                            192
  CLUS_2                           33                            220
  CLUS_3                          114                            362
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9Q21.11) MUTATED       77     67     38     30     19     55
  DEL PEAK 18(9Q21.11) WILD-TYPE    154     93    284     97     67     79
D47V10, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           77                            154
  CLUS_2                           67                             93
  CLUS_3                           38                            284
  CLUS_4                           30                             97
  CLUS_5                           19                             67
  CLUS_6                           55                             79
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9Q21.11) MUTATED       55     56     21     15     22
  DEL PEAK 18(9Q21.11) WILD-TYPE    125     83     78     96    111
D47V11, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                           55                            125
  CLUS_2                           56                             83
  CLUS_3                           21                             78
  CLUS_4                           15                             96
  CLUS_5                           22                            111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9Q21.11) MUTATED      107     45     17
  DEL PEAK 18(9Q21.11) WILD-TYPE    198    202     93
D47V12, multiclass
        clus
vv       DEL PEAK 18(9Q21.11) MUTATED DEL PEAK 18(9Q21.11) WILD-TYPE
  CLUS_1                          107                            198
  CLUS_2                           45                            202
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED        6      4     40     55     23     18
  DEL PEAK 19(9Q34.2) WILD-TYPE     15     32     79     41     86     54
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 19(9Q34.2) MUTATED        7      4
  DEL PEAK 19(9Q34.2) WILD-TYPE     13     36
D48V1, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           4                            32
  CLUS_3                          40                            79
  CLUS_4                          55                            41
  CLUS_5                          23                            86
  CLUS_6                          18                            54
  CLUS_7                           7                            13
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       36     23     38     50     10
  DEL PEAK 19(9Q34.2) WILD-TYPE     65    129     76     38     48
D48V2, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          36                            65
  CLUS_2                          23                           129
  CLUS_3                          38                            76
  CLUS_4                          50                            38
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       98     30     14    140     14
  DEL PEAK 19(9Q34.2) WILD-TYPE    162    382     79    125     35
D48V3, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          98                           162
  CLUS_2                          30                           382
  CLUS_3                          14                            79
  CLUS_4                         140                           125
  CLUS_5                          14                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       74     37     47     10     21
  DEL PEAK 19(9Q34.2) WILD-TYPE     58    160    130     78    107
D48V4, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          74                            58
  CLUS_2                          37                           160
  CLUS_3                          47                           130
  CLUS_4                          10                            78
  CLUS_5                          21                           107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED       68     33     21
  DEL PEAK 19(9Q34.2) WILD-TYPE     81     99     96
D48V5, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          68                            81
  CLUS_2                          33                            99
  CLUS_3                          21                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       12     20     50     37      3
  DEL PEAK 19(9Q34.2) WILD-TYPE     52     86     40     70     28
D48V6, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          20                            86
  CLUS_3                          50                            40
  CLUS_4                          37                            70
  CLUS_5                           3                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED      144    133     18
  DEL PEAK 19(9Q34.2) WILD-TYPE    399    165    214
D48V7, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         144                           399
  CLUS_2                         133                           165
  CLUS_3                          18                           214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       75     51     39     14    102     14
  DEL PEAK 19(9Q34.2) WILD-TYPE    144    113    267    127     81     46
D48V8, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          75                           144
  CLUS_2                          51                           113
  CLUS_3                          39                           267
  CLUS_4                          14                           127
  CLUS_5                         102                            81
  CLUS_6                          14                            46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED      155     31    101
  DEL PEAK 19(9Q34.2) WILD-TYPE    176    222    375
D48V9, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         155                           176
  CLUS_2                          31                           222
  CLUS_3                         101                           375
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q34.2) MUTATED       69     61     33     29     17     78
  DEL PEAK 19(9Q34.2) WILD-TYPE    162     99    289     98     69     56
D48V10, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          69                           162
  CLUS_2                          61                            99
  CLUS_3                          33                           289
  CLUS_4                          29                            98
  CLUS_5                          17                            69
  CLUS_6                          78                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q34.2) MUTATED       48     77     17     13     20
  DEL PEAK 19(9Q34.2) WILD-TYPE    132     62     82     98    113
D48V11, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                          48                           132
  CLUS_2                          77                            62
  CLUS_3                          17                            82
  CLUS_4                          13                            98
  CLUS_5                          20                           113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q34.2) MUTATED      118     43     14
  DEL PEAK 19(9Q34.2) WILD-TYPE    187    204     96
D48V12, multiclass
        clus
vv       DEL PEAK 19(9Q34.2) MUTATED DEL PEAK 19(9Q34.2) WILD-TYPE
  CLUS_1                         118                           187
  CLUS_2                          43                           204
  CLUS_3                          14                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED        7      6     36     49     20     21
  DEL PEAK 20(10Q23.31) WILD-TYPE     14     30     83     47     89     51
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 20(10Q23.31) MUTATED        7      3
  DEL PEAK 20(10Q23.31) WILD-TYPE     13     37
D49V1, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                             7                              14
  CLUS_2                             6                              30
  CLUS_3                            36                              83
  CLUS_4                            49                              47
  CLUS_5                            20                              89
  CLUS_6                            21                              51
  CLUS_7                             7                              13
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       28     29     39     45      8
  DEL PEAK 20(10Q23.31) WILD-TYPE     73    123     75     43     50
D49V2, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            28                              73
  CLUS_2                            29                             123
  CLUS_3                            39                              75
  CLUS_4                            45                              43
  CLUS_5                             8                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       88     53     24    137     18
  DEL PEAK 20(10Q23.31) WILD-TYPE    172    359     69    128     31
D49V3, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            88                             172
  CLUS_2                            53                             359
  CLUS_3                            24                              69
  CLUS_4                           137                             128
  CLUS_5                            18                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       76     40     65     17     26
  DEL PEAK 20(10Q23.31) WILD-TYPE     56    157    112     71    102
D49V4, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            76                              56
  CLUS_2                            40                             157
  CLUS_3                            65                             112
  CLUS_4                            17                              71
  CLUS_5                            26                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED       68     30     20
  DEL PEAK 20(10Q23.31) WILD-TYPE     81    102     97
D49V5, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            68                              81
  CLUS_2                            30                             102
  CLUS_3                            20                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       12     17     45     34     10
  DEL PEAK 20(10Q23.31) WILD-TYPE     52     89     45     73     21
D49V6, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                            17                              89
  CLUS_3                            45                              45
  CLUS_4                            34                              73
  CLUS_5                            10                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED      145    142     31
  DEL PEAK 20(10Q23.31) WILD-TYPE    398    156    201
D49V7, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           145                             398
  CLUS_2                           142                             156
  CLUS_3                            31                             201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       69     65     49     17     96     22
  DEL PEAK 20(10Q23.31) WILD-TYPE    150     99    257    124     87     38
D49V8, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            69                             150
  CLUS_2                            65                              99
  CLUS_3                            49                             257
  CLUS_4                            17                             124
  CLUS_5                            96                              87
  CLUS_6                            22                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED      144     56    111
  DEL PEAK 20(10Q23.31) WILD-TYPE    187    197    365
D49V9, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           144                             187
  CLUS_2                            56                             197
  CLUS_3                           111                             365
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q23.31) MUTATED       66     71     57     26     18     73
  DEL PEAK 20(10Q23.31) WILD-TYPE    165     89    265    101     68     61
D49V10, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            66                             165
  CLUS_2                            71                              89
  CLUS_3                            57                             265
  CLUS_4                            26                             101
  CLUS_5                            18                              68
  CLUS_6                            73                              61
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10Q23.31) MUTATED       53     74     22     17     32
  DEL PEAK 20(10Q23.31) WILD-TYPE    127     65     77     94    101
D49V11, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                            53                             127
  CLUS_2                            74                              65
  CLUS_3                            22                              77
  CLUS_4                            17                              94
  CLUS_5                            32                             101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q23.31) MUTATED      116     61     21
  DEL PEAK 20(10Q23.31) WILD-TYPE    189    186     89
D49V12, multiclass
        clus
vv       DEL PEAK 20(10Q23.31) MUTATED DEL PEAK 20(10Q23.31) WILD-TYPE
  CLUS_1                           116                             189
  CLUS_2                            61                             186
  CLUS_3                            21                              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED        8      7     38     55     14     22
  DEL PEAK 21(10Q26.3) WILD-TYPE     13     29     81     41     95     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 21(10Q26.3) MUTATED        6      4
  DEL PEAK 21(10Q26.3) WILD-TYPE     14     36
D50V1, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                            7                             29
  CLUS_3                           38                             81
  CLUS_4                           55                             41
  CLUS_5                           14                             95
  CLUS_6                           22                             50
  CLUS_7                            6                             14
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       31     23     44     49      7
  DEL PEAK 21(10Q26.3) WILD-TYPE     70    129     70     39     51
D50V2, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           23                            129
  CLUS_3                           44                             70
  CLUS_4                           49                             39
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       95     50     21    140     13
  DEL PEAK 21(10Q26.3) WILD-TYPE    165    362     72    125     36
D50V3, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           95                            165
  CLUS_2                           50                            362
  CLUS_3                           21                             72
  CLUS_4                          140                            125
  CLUS_5                           13                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       75     37     68     12     24
  DEL PEAK 21(10Q26.3) WILD-TYPE     57    160    109     76    104
D50V4, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           75                             57
  CLUS_2                           37                            160
  CLUS_3                           68                            109
  CLUS_4                           12                             76
  CLUS_5                           24                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       73     28     24
  DEL PEAK 21(10Q26.3) WILD-TYPE     76    104     93
D50V5, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           73                             76
  CLUS_2                           28                            104
  CLUS_3                           24                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       11     16     48     36     14
  DEL PEAK 21(10Q26.3) WILD-TYPE     53     90     42     71     17
D50V6, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           16                             90
  CLUS_3                           48                             42
  CLUS_4                           36                             71
  CLUS_5                           14                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      145    150     23
  DEL PEAK 21(10Q26.3) WILD-TYPE    398    148    209
D50V7, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          145                            398
  CLUS_2                          150                            148
  CLUS_3                           23                            209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       64     71     43     16     98     26
  DEL PEAK 21(10Q26.3) WILD-TYPE    155     93    263    125     85     34
D50V8, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           64                            155
  CLUS_2                           71                             93
  CLUS_3                           43                            263
  CLUS_4                           16                            125
  CLUS_5                           98                             85
  CLUS_6                           26                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      147     48    113
  DEL PEAK 21(10Q26.3) WILD-TYPE    184    205    363
D50V9, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          147                            184
  CLUS_2                           48                            205
  CLUS_3                          113                            363
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       76     73     48     21     18     72
  DEL PEAK 21(10Q26.3) WILD-TYPE    155     87    274    106     68     62
D50V10, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           76                            155
  CLUS_2                           73                             87
  CLUS_3                           48                            274
  CLUS_4                           21                            106
  CLUS_5                           18                             68
  CLUS_6                           72                             62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       60     72     20     13     33
  DEL PEAK 21(10Q26.3) WILD-TYPE    120     67     79     98    100
D50V11, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           60                            120
  CLUS_2                           72                             67
  CLUS_3                           20                             79
  CLUS_4                           13                             98
  CLUS_5                           33                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED      125     54     19
  DEL PEAK 21(10Q26.3) WILD-TYPE    180    193     91
D50V12, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                          125                            180
  CLUS_2                           54                            193
  CLUS_3                           19                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED        3      8     33     48     14     34
  DEL PEAK 22(11P15.5) WILD-TYPE     18     28     86     48     95     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(11P15.5) MUTATED        7      9
  DEL PEAK 22(11P15.5) WILD-TYPE     13     31
D51V1, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            8                             28
  CLUS_3                           33                             86
  CLUS_4                           48                             48
  CLUS_5                           14                             95
  CLUS_6                           34                             38
  CLUS_7                            7                             13
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       24     32     50     42      8
  DEL PEAK 22(11P15.5) WILD-TYPE     77    120     64     46     50
D51V2, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           24                             77
  CLUS_2                           32                            120
  CLUS_3                           50                             64
  CLUS_4                           42                             46
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       89     36     17    159      8
  DEL PEAK 22(11P15.5) WILD-TYPE    171    376     76    106     41
D51V3, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           89                            171
  CLUS_2                           36                            376
  CLUS_3                           17                             76
  CLUS_4                          159                            106
  CLUS_5                            8                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       69     33     57     15     22
  DEL PEAK 22(11P15.5) WILD-TYPE     63    164    120     73    106
D51V4, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           69                             63
  CLUS_2                           33                            164
  CLUS_3                           57                            120
  CLUS_4                           15                             73
  CLUS_5                           22                            106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       77     27     26
  DEL PEAK 22(11P15.5) WILD-TYPE     72    105     91
D51V5, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           77                             72
  CLUS_2                           27                            105
  CLUS_3                           26                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       11     20     48     36     15
  DEL PEAK 22(11P15.5) WILD-TYPE     53     86     42     71     16
D51V6, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           20                             86
  CLUS_3                           48                             42
  CLUS_4                           36                             71
  CLUS_5                           15                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      133    147     28
  DEL PEAK 22(11P15.5) WILD-TYPE    410    151    204
D51V7, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          133                            410
  CLUS_2                          147                            151
  CLUS_3                           28                            204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       57     63     54     15     91     28
  DEL PEAK 22(11P15.5) WILD-TYPE    162    101    252    126     92     32
D51V8, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           57                            162
  CLUS_2                           63                            101
  CLUS_3                           54                            252
  CLUS_4                           15                            126
  CLUS_5                           91                             92
  CLUS_6                           28                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      157     43    101
  DEL PEAK 22(11P15.5) WILD-TYPE    174    210    375
D51V9, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          157                            174
  CLUS_2                           43                            210
  CLUS_3                          101                            375
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       76     68     49     27     12     69
  DEL PEAK 22(11P15.5) WILD-TYPE    155     92    273    100     74     65
D51V10, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           76                            155
  CLUS_2                           68                             92
  CLUS_3                           49                            273
  CLUS_4                           27                            100
  CLUS_5                           12                             74
  CLUS_6                           69                             65
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       47     69     20     15     30
  DEL PEAK 22(11P15.5) WILD-TYPE    133     70     79     96    103
D51V11, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           47                            133
  CLUS_2                           69                             70
  CLUS_3                           20                             79
  CLUS_4                           15                             96
  CLUS_5                           30                            103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED      110     51     20
  DEL PEAK 22(11P15.5) WILD-TYPE    195    196     90
D51V12, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                          110                            195
  CLUS_2                           51                            196
  CLUS_3                           20                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.3) MUTATED       12     21     89     40     36     37
  DEL PEAK 23(11Q23.3) WILD-TYPE      9     15     30     56     73     35
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(11Q23.3) MUTATED       12     22
  DEL PEAK 23(11Q23.3) WILD-TYPE      8     18
D52V1, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           21                             15
  CLUS_3                           89                             30
  CLUS_4                           40                             56
  CLUS_5                           36                             73
  CLUS_6                           37                             35
  CLUS_7                           12                              8
  CLUS_8                           22                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.3) MUTATED       77     74     64     37     17
  DEL PEAK 23(11Q23.3) WILD-TYPE     24     78     50     51     41
D52V2, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                           77                             24
  CLUS_2                           74                             78
  CLUS_3                           64                             50
  CLUS_4                           37                             51
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.3) MUTATED      212    134     39    140     21
  DEL PEAK 23(11Q23.3) WILD-TYPE     48    278     54    125     28
D52V3, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          212                             48
  CLUS_2                          134                            278
  CLUS_3                           39                             54
  CLUS_4                          140                            125
  CLUS_5                           21                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.3) MUTATED       66     98    123     33     44
  DEL PEAK 23(11Q23.3) WILD-TYPE     66     99     54     55     84
D52V4, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                           66                             66
  CLUS_2                           98                             99
  CLUS_3                          123                             54
  CLUS_4                           33                             55
  CLUS_5                           44                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.3) MUTATED       78     70     59
  DEL PEAK 23(11Q23.3) WILD-TYPE     71     62     58
D52V5, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                           78                             71
  CLUS_2                           70                             62
  CLUS_3                           59                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.3) MUTATED       20     54     41     75     17
  DEL PEAK 23(11Q23.3) WILD-TYPE     44     52     49     32     14
D52V6, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                           54                             52
  CLUS_3                           41                             49
  CLUS_4                           75                             32
  CLUS_5                           17                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.3) MUTATED      313    138     93
  DEL PEAK 23(11Q23.3) WILD-TYPE    230    160    139
D52V7, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          313                            230
  CLUS_2                          138                            160
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.3) MUTATED      158    100    151     33     78     24
  DEL PEAK 23(11Q23.3) WILD-TYPE     61     64    155    108    105     36
D52V8, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          158                             61
  CLUS_2                          100                             64
  CLUS_3                          151                            155
  CLUS_4                           33                            108
  CLUS_5                           78                            105
  CLUS_6                           24                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.3) MUTATED      166    110    255
  DEL PEAK 23(11Q23.3) WILD-TYPE    165    143    221
D52V9, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          166                            165
  CLUS_2                          110                            143
  CLUS_3                          255                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.3) MUTATED      149     79    139     59     45     60
  DEL PEAK 23(11Q23.3) WILD-TYPE     82     81    183     68     41     74
D52V10, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          149                             82
  CLUS_2                           79                             81
  CLUS_3                          139                            183
  CLUS_4                           59                             68
  CLUS_5                           45                             41
  CLUS_6                           60                             74
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.3) MUTATED      106     63     57     37     64
  DEL PEAK 23(11Q23.3) WILD-TYPE     74     76     42     74     69
D52V11, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          106                             74
  CLUS_2                           63                             76
  CLUS_3                           57                             42
  CLUS_4                           37                             74
  CLUS_5                           64                             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.3) MUTATED      161    119     47
  DEL PEAK 23(11Q23.3) WILD-TYPE    144    128     63
D52V12, multiclass
        clus
vv       DEL PEAK 23(11Q23.3) MUTATED DEL PEAK 23(11Q23.3) WILD-TYPE
  CLUS_1                          161                            144
  CLUS_2                          119                            128
  CLUS_3                           47                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED        5      8     26     24      9     13
  DEL PEAK 24(12P13.1) WILD-TYPE     16     28     93     72    100     59
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 24(12P13.1) MUTATED        5      5
  DEL PEAK 24(12P13.1) WILD-TYPE     15     35
D53V1, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            8                             28
  CLUS_3                           26                             93
  CLUS_4                           24                             72
  CLUS_5                            9                            100
  CLUS_6                           13                             59
  CLUS_7                            5                             15
  CLUS_8                            5                             35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       19     21     27     21      7
  DEL PEAK 24(12P13.1) WILD-TYPE     82    131     87     67     51
D53V2, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           19                             82
  CLUS_2                           21                            131
  CLUS_3                           27                             87
  CLUS_4                           21                             67
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       55     47     14     65      7
  DEL PEAK 24(12P13.1) WILD-TYPE    205    365     79    200     42
D53V3, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           55                            205
  CLUS_2                           47                            365
  CLUS_3                           14                             79
  CLUS_4                           65                            200
  CLUS_5                            7                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       35     29     30     13     17
  DEL PEAK 24(12P13.1) WILD-TYPE     97    168    147     75    111
D53V4, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           35                             97
  CLUS_2                           29                            168
  CLUS_3                           30                            147
  CLUS_4                           13                             75
  CLUS_5                           17                            111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       34     23     18
  DEL PEAK 24(12P13.1) WILD-TYPE    115    109     99
D53V5, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           34                            115
  CLUS_2                           23                            109
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       12     15     23     18      7
  DEL PEAK 24(12P13.1) WILD-TYPE     52     91     67     89     24
D53V6, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           15                             91
  CLUS_3                           23                             67
  CLUS_4                           18                             89
  CLUS_5                            7                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       83     73     31
  DEL PEAK 24(12P13.1) WILD-TYPE    460    225    201
D53V7, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           83                            460
  CLUS_2                           73                            225
  CLUS_3                           31                            201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED       37     36     40     14     42     18
  DEL PEAK 24(12P13.1) WILD-TYPE    182    128    266    127    141     42
D53V8, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           37                            182
  CLUS_2                           36                            128
  CLUS_3                           40                            266
  CLUS_4                           14                            127
  CLUS_5                           42                            141
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       78     35     72
  DEL PEAK 24(12P13.1) WILD-TYPE    253    218    404
D53V9, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           78                            253
  CLUS_2                           35                            218
  CLUS_3                           72                            404
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(12P13.1) MUTATED       44     46     41     12     14     28
  DEL PEAK 24(12P13.1) WILD-TYPE    187    114    281    115     72    106
D53V10, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           44                            187
  CLUS_2                           46                            114
  CLUS_3                           41                            281
  CLUS_4                           12                            115
  CLUS_5                           14                             72
  CLUS_6                           28                            106
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(12P13.1) MUTATED       31     38     11     13     20
  DEL PEAK 24(12P13.1) WILD-TYPE    149    101     88     98    113
D53V11, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           31                            149
  CLUS_2                           38                            101
  CLUS_3                           11                             88
  CLUS_4                           13                             98
  CLUS_5                           20                            113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12P13.1) MUTATED       68     28     17
  DEL PEAK 24(12P13.1) WILD-TYPE    237    219     93
D53V12, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           68                            237
  CLUS_2                           28                            219
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q23.1) MUTATED        2      1     14     43      6     22
  DEL PEAK 25(12Q23.1) WILD-TYPE     19     35    105     53    103     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 25(12Q23.1) MUTATED        4      4
  DEL PEAK 25(12Q23.1) WILD-TYPE     16     36
D54V1, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                            2                             19
  CLUS_2                            1                             35
  CLUS_3                           14                            105
  CLUS_4                           43                             53
  CLUS_5                            6                            103
  CLUS_6                           22                             50
  CLUS_7                            4                             16
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q23.1) MUTATED       12     10     34     37      3
  DEL PEAK 25(12Q23.1) WILD-TYPE     89    142     80     51     55
D54V2, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           12                             89
  CLUS_2                           10                            142
  CLUS_3                           34                             80
  CLUS_4                           37                             51
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q23.1) MUTATED       33     32     16    115      5
  DEL PEAK 25(12Q23.1) WILD-TYPE    227    380     77    150     44
D54V3, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           33                            227
  CLUS_2                           32                            380
  CLUS_3                           16                             77
  CLUS_4                          115                            150
  CLUS_5                            5                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q23.1) MUTATED       68     14     30     12     14
  DEL PEAK 25(12Q23.1) WILD-TYPE     64    183    147     76    114
D54V4, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           68                             64
  CLUS_2                           14                            183
  CLUS_3                           30                            147
  CLUS_4                           12                             76
  CLUS_5                           14                            114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q23.1) MUTATED       49     11     18
  DEL PEAK 25(12Q23.1) WILD-TYPE    100    121     99
D54V5, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           49                            100
  CLUS_2                           11                            121
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q23.1) MUTATED        5     11     40     15      7
  DEL PEAK 25(12Q23.1) WILD-TYPE     59     95     50     92     24
D54V6, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           11                             95
  CLUS_3                           40                             50
  CLUS_4                           15                             92
  CLUS_5                            7                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q23.1) MUTATED       66    114     19
  DEL PEAK 25(12Q23.1) WILD-TYPE    477    184    213
D54V7, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           66                            477
  CLUS_2                          114                            184
  CLUS_3                           19                            213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q23.1) MUTATED       26     42     26      7     80     18
  DEL PEAK 25(12Q23.1) WILD-TYPE    193    122    280    134    103     42
D54V8, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           26                            193
  CLUS_2                           42                            122
  CLUS_3                           26                            280
  CLUS_4                            7                            134
  CLUS_5                           80                            103
  CLUS_6                           18                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q23.1) MUTATED      117     25     55
  DEL PEAK 25(12Q23.1) WILD-TYPE    214    228    421
D54V9, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                          117                            214
  CLUS_2                           25                            228
  CLUS_3                           55                            421
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q23.1) MUTATED       46     45     28     12      7     59
  DEL PEAK 25(12Q23.1) WILD-TYPE    185    115    294    115     79     75
D54V10, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           46                            185
  CLUS_2                           45                            115
  CLUS_3                           28                            294
  CLUS_4                           12                            115
  CLUS_5                            7                             79
  CLUS_6                           59                             75
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12Q23.1) MUTATED       27     62      7     14     21
  DEL PEAK 25(12Q23.1) WILD-TYPE    153     77     92     97    112
D54V11, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           27                            153
  CLUS_2                           62                             77
  CLUS_3                            7                             92
  CLUS_4                           14                             97
  CLUS_5                           21                            112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q23.1) MUTATED       90     30     11
  DEL PEAK 25(12Q23.1) WILD-TYPE    215    217     99
D54V12, multiclass
        clus
vv       DEL PEAK 25(12Q23.1) MUTATED DEL PEAK 25(12Q23.1) WILD-TYPE
  CLUS_1                           90                            215
  CLUS_2                           30                            217
  CLUS_3                           11                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q24.31) MUTATED        4      6     12     42      6     20
  DEL PEAK 26(12Q24.31) WILD-TYPE     17     30    107     54    103     52
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 26(12Q24.31) MUTATED        5      6
  DEL PEAK 26(12Q24.31) WILD-TYPE     15     34
D55V1, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                             4                              17
  CLUS_2                             6                              30
  CLUS_3                            12                             107
  CLUS_4                            42                              54
  CLUS_5                             6                             103
  CLUS_6                            20                              52
  CLUS_7                             5                              15
  CLUS_8                             6                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.31) MUTATED       10     15     35     37      4
  DEL PEAK 26(12Q24.31) WILD-TYPE     91    137     79     51     54
D55V2, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            10                              91
  CLUS_2                            15                             137
  CLUS_3                            35                              79
  CLUS_4                            37                              51
  CLUS_5                             4                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.31) MUTATED       33     40     17    115      6
  DEL PEAK 26(12Q24.31) WILD-TYPE    227    372     76    150     43
D55V3, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            33                             227
  CLUS_2                            40                             372
  CLUS_3                            17                              76
  CLUS_4                           115                             150
  CLUS_5                             6                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.31) MUTATED       68     18     26     14     16
  DEL PEAK 26(12Q24.31) WILD-TYPE     64    179    151     74    112
D55V4, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            68                              64
  CLUS_2                            18                             179
  CLUS_3                            26                             151
  CLUS_4                            14                              74
  CLUS_5                            16                             112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q24.31) MUTATED       49     13     20
  DEL PEAK 26(12Q24.31) WILD-TYPE    100    119     97
D55V5, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            49                             100
  CLUS_2                            13                             119
  CLUS_3                            20                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.31) MUTATED        7     13     36     16     10
  DEL PEAK 26(12Q24.31) WILD-TYPE     57     93     54     91     21
D55V6, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                             7                              57
  CLUS_2                            13                              93
  CLUS_3                            36                              54
  CLUS_4                            16                              91
  CLUS_5                            10                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q24.31) MUTATED       63    118     29
  DEL PEAK 26(12Q24.31) WILD-TYPE    480    180    203
D55V7, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            63                             480
  CLUS_2                           118                             180
  CLUS_3                            29                             203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q24.31) MUTATED       25     37     41      6     79     22
  DEL PEAK 26(12Q24.31) WILD-TYPE    194    127    265    135    104     38
D55V8, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            25                             194
  CLUS_2                            37                             127
  CLUS_3                            41                             265
  CLUS_4                             6                             135
  CLUS_5                            79                             104
  CLUS_6                            22                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q24.31) MUTATED      108     37     63
  DEL PEAK 26(12Q24.31) WILD-TYPE    223    216    413
D55V9, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                           108                             223
  CLUS_2                            37                             216
  CLUS_3                            63                             413
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12Q24.31) MUTATED       49     44     38     14      5     58
  DEL PEAK 26(12Q24.31) WILD-TYPE    182    116    284    113     81     76
D55V10, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            49                             182
  CLUS_2                            44                             116
  CLUS_3                            38                             284
  CLUS_4                            14                             113
  CLUS_5                             5                              81
  CLUS_6                            58                              76
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q24.31) MUTATED       29     60     12     16     23
  DEL PEAK 26(12Q24.31) WILD-TYPE    151     79     87     95    110
D55V11, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            29                             151
  CLUS_2                            60                              79
  CLUS_3                            12                              87
  CLUS_4                            16                              95
  CLUS_5                            23                             110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q24.31) MUTATED       88     37     15
  DEL PEAK 26(12Q24.31) WILD-TYPE    217    210     95
D55V12, multiclass
        clus
vv       DEL PEAK 26(12Q24.31) MUTATED DEL PEAK 26(12Q24.31) WILD-TYPE
  CLUS_1                            88                             217
  CLUS_2                            37                             210
  CLUS_3                            15                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.2) MUTATED        8     12     70     60     34     41
  DEL PEAK 27(13Q14.2) WILD-TYPE     13     24     49     36     75     31
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(13Q14.2) MUTATED        9     13
  DEL PEAK 27(13Q14.2) WILD-TYPE     11     27
D56V1, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           12                             24
  CLUS_3                           70                             49
  CLUS_4                           60                             36
  CLUS_5                           34                             75
  CLUS_6                           41                             31
  CLUS_7                            9                             11
  CLUS_8                           13                             27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED       64     47     67     56     13
  DEL PEAK 27(13Q14.2) WILD-TYPE     37    105     47     32     45
D56V2, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           47                            105
  CLUS_3                           67                             47
  CLUS_4                           56                             32
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED      164     90     54    159     27
  DEL PEAK 27(13Q14.2) WILD-TYPE     96    322     39    106     22
D56V3, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                          164                             96
  CLUS_2                           90                            322
  CLUS_3                           54                             39
  CLUS_4                          159                            106
  CLUS_5                           27                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED       84     81     97     24     44
  DEL PEAK 27(13Q14.2) WILD-TYPE     48    116     80     64     84
D56V4, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           84                             48
  CLUS_2                           81                            116
  CLUS_3                           97                             80
  CLUS_4                           24                             64
  CLUS_5                           44                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.2) MUTATED       79     57     56
  DEL PEAK 27(13Q14.2) WILD-TYPE     70     75     61
D56V5, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           79                             70
  CLUS_2                           57                             75
  CLUS_3                           56                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED       19     44     58     61     10
  DEL PEAK 27(13Q14.2) WILD-TYPE     45     62     32     46     21
D56V6, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           19                             45
  CLUS_2                           44                             62
  CLUS_3                           58                             32
  CLUS_4                           61                             46
  CLUS_5                           10                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.2) MUTATED      257    172     63
  DEL PEAK 27(13Q14.2) WILD-TYPE    286    126    169
D56V7, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                          257                            286
  CLUS_2                          172                            126
  CLUS_3                           63                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.2) MUTATED      112     96    109     37    114     24
  DEL PEAK 27(13Q14.2) WILD-TYPE    107     68    197    104     69     36
D56V8, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                          112                            107
  CLUS_2                           96                             68
  CLUS_3                          109                            197
  CLUS_4                           37                            104
  CLUS_5                          114                             69
  CLUS_6                           24                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.2) MUTATED      188     83    212
  DEL PEAK 27(13Q14.2) WILD-TYPE    143    170    264
D56V9, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                          188                            143
  CLUS_2                           83                            170
  CLUS_3                          212                            264
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(13Q14.2) MUTATED      130     72    107     49     37     88
  DEL PEAK 27(13Q14.2) WILD-TYPE    101     88    215     78     49     46
D56V10, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                          130                            101
  CLUS_2                           72                             88
  CLUS_3                          107                            215
  CLUS_4                           49                             78
  CLUS_5                           37                             49
  CLUS_6                           88                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(13Q14.2) MUTATED       92     87     35     25     46
  DEL PEAK 27(13Q14.2) WILD-TYPE     88     52     64     86     87
D56V11, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                           92                             88
  CLUS_2                           87                             52
  CLUS_3                           35                             64
  CLUS_4                           25                             86
  CLUS_5                           46                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(13Q14.2) MUTATED      163     84     38
  DEL PEAK 27(13Q14.2) WILD-TYPE    142    163     72
D56V12, multiclass
        clus
vv       DEL PEAK 27(13Q14.2) MUTATED DEL PEAK 27(13Q14.2) WILD-TYPE
  CLUS_1                          163                            142
  CLUS_2                           84                            163
  CLUS_3                           38                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q24.1) MUTATED        4      7     47     63     10     22
  DEL PEAK 28(14Q24.1) WILD-TYPE     17     29     72     33     99     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 28(14Q24.1) MUTATED       10      8
  DEL PEAK 28(14Q24.1) WILD-TYPE     10     32
D57V1, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                            4                             17
  CLUS_2                            7                             29
  CLUS_3                           47                             72
  CLUS_4                           63                             33
  CLUS_5                           10                             99
  CLUS_6                           22                             50
  CLUS_7                           10                             10
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED       37     30     41     59      4
  DEL PEAK 28(14Q24.1) WILD-TYPE     64    122     73     29     54
D57V2, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           30                            122
  CLUS_3                           41                             73
  CLUS_4                           59                             29
  CLUS_5                            4                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED       96     48     22    170     17
  DEL PEAK 28(14Q24.1) WILD-TYPE    164    364     71     95     32
D57V3, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           96                            164
  CLUS_2                           48                            364
  CLUS_3                           22                             71
  CLUS_4                          170                             95
  CLUS_5                           17                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED       88     38     58     17     31
  DEL PEAK 28(14Q24.1) WILD-TYPE     44    159    119     71     97
D57V4, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           88                             44
  CLUS_2                           38                            159
  CLUS_3                           58                            119
  CLUS_4                           17                             71
  CLUS_5                           31                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q24.1) MUTATED       77     27     33
  DEL PEAK 28(14Q24.1) WILD-TYPE     72    105     84
D57V5, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           77                             72
  CLUS_2                           27                            105
  CLUS_3                           33                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED        6     27     58     38      8
  DEL PEAK 28(14Q24.1) WILD-TYPE     58     79     32     69     23
D57V6, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                           27                             79
  CLUS_3                           58                             32
  CLUS_4                           38                             69
  CLUS_5                            8                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q24.1) MUTATED      151    166     34
  DEL PEAK 28(14Q24.1) WILD-TYPE    392    132    198
D57V7, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                          151                            392
  CLUS_2                          166                            132
  CLUS_3                           34                            198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q24.1) MUTATED       71     68     57     15    124     16
  DEL PEAK 28(14Q24.1) WILD-TYPE    148     96    249    126     59     44
D57V8, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           71                            148
  CLUS_2                           68                             96
  CLUS_3                           57                            249
  CLUS_4                           15                            126
  CLUS_5                          124                             59
  CLUS_6                           16                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q24.1) MUTATED      177     50    116
  DEL PEAK 28(14Q24.1) WILD-TYPE    154    203    360
D57V9, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                          177                            154
  CLUS_2                           50                            203
  CLUS_3                          116                            360
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(14Q24.1) MUTATED       82     68     54     26     17     96
  DEL PEAK 28(14Q24.1) WILD-TYPE    149     92    268    101     69     38
D57V10, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           82                            149
  CLUS_2                           68                             92
  CLUS_3                           54                            268
  CLUS_4                           26                            101
  CLUS_5                           17                             69
  CLUS_6                           96                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(14Q24.1) MUTATED       56     89     19     24     31
  DEL PEAK 28(14Q24.1) WILD-TYPE    124     50     80     87    102
D57V11, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                           56                            124
  CLUS_2                           89                             50
  CLUS_3                           19                             80
  CLUS_4                           24                             87
  CLUS_5                           31                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(14Q24.1) MUTATED      145     52     22
  DEL PEAK 28(14Q24.1) WILD-TYPE    160    195     88
D57V12, multiclass
        clus
vv       DEL PEAK 28(14Q24.1) MUTATED DEL PEAK 28(14Q24.1) WILD-TYPE
  CLUS_1                          145                            160
  CLUS_2                           52                            195
  CLUS_3                           22                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(15Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q13.1) MUTATED        5     11     41     58     24     34
  DEL PEAK 29(15Q13.1) WILD-TYPE     16     25     78     38     85     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 29(15Q13.1) MUTATED       10      8
  DEL PEAK 29(15Q13.1) WILD-TYPE     10     32
D58V1, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             25
  CLUS_3                           41                             78
  CLUS_4                           58                             38
  CLUS_5                           24                             85
  CLUS_6                           34                             38
  CLUS_7                           10                             10
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q13.1) MUTATED       36     35     54     54     12
  DEL PEAK 29(15Q13.1) WILD-TYPE     65    117     60     34     46
D58V2, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           36                             65
  CLUS_2                           35                            117
  CLUS_3                           54                             60
  CLUS_4                           54                             34
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q13.1) MUTATED       92     49     44    175     14
  DEL PEAK 29(15Q13.1) WILD-TYPE    168    363     49     90     35
D58V3, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           92                            168
  CLUS_2                           49                            363
  CLUS_3                           44                             49
  CLUS_4                          175                             90
  CLUS_5                           14                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q13.1) MUTATED       86     45     65     20     29
  DEL PEAK 29(15Q13.1) WILD-TYPE     46    152    112     68     99
D58V4, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           86                             46
  CLUS_2                           45                            152
  CLUS_3                           65                            112
  CLUS_4                           20                             68
  CLUS_5                           29                             99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q13.1) MUTATED       80     39     38
  DEL PEAK 29(15Q13.1) WILD-TYPE     69     93     79
D58V5, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           80                             69
  CLUS_2                           39                             93
  CLUS_3                           38                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q13.1) MUTATED       18     29     54     43     13
  DEL PEAK 29(15Q13.1) WILD-TYPE     46     77     36     64     18
D58V6, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           29                             77
  CLUS_3                           54                             36
  CLUS_4                           43                             64
  CLUS_5                           13                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q13.1) MUTATED      175    166     31
  DEL PEAK 29(15Q13.1) WILD-TYPE    368    132    201
D58V7, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                          175                            368
  CLUS_2                          166                            132
  CLUS_3                           31                            201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q13.1) MUTATED       70     75     62     24    120     21
  DEL PEAK 29(15Q13.1) WILD-TYPE    149     89    244    117     63     39
D58V8, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           70                            149
  CLUS_2                           75                             89
  CLUS_3                           62                            244
  CLUS_4                           24                            117
  CLUS_5                          120                             63
  CLUS_6                           21                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q13.1) MUTATED      185     45    135
  DEL PEAK 29(15Q13.1) WILD-TYPE    146    208    341
D58V9, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                          185                            146
  CLUS_2                           45                            208
  CLUS_3                          135                            341
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(15Q13.1) MUTATED       89     70     48     46     17     95
  DEL PEAK 29(15Q13.1) WILD-TYPE    142     90    274     81     69     39
D58V10, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           89                            142
  CLUS_2                           70                             90
  CLUS_3                           48                            274
  CLUS_4                           46                             81
  CLUS_5                           17                             69
  CLUS_6                           95                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(15Q13.1) MUTATED       65     90     21     28     26
  DEL PEAK 29(15Q13.1) WILD-TYPE    115     49     78     83    107
D58V11, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                           65                            115
  CLUS_2                           90                             49
  CLUS_3                           21                             78
  CLUS_4                           28                             83
  CLUS_5                           26                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(15Q13.1) MUTATED      139     54     37
  DEL PEAK 29(15Q13.1) WILD-TYPE    166    193     73
D58V12, multiclass
        clus
vv       DEL PEAK 29(15Q13.1) MUTATED DEL PEAK 29(15Q13.1) WILD-TYPE
  CLUS_1                          139                            166
  CLUS_2                           54                            193
  CLUS_3                           37                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q24.3) MUTATED       16     25     81     27     94     45
  DEL PEAK 30(16Q24.3) WILD-TYPE      5     11     38     69     15     27
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 30(16Q24.3) MUTATED       13     35
  DEL PEAK 30(16Q24.3) WILD-TYPE      7      5
D59V1, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           16                              5
  CLUS_2                           25                             11
  CLUS_3                           81                             38
  CLUS_4                           27                             69
  CLUS_5                           94                             15
  CLUS_6                           45                             27
  CLUS_7                           13                              7
  CLUS_8                           35                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED       74    124     71     22     45
  DEL PEAK 30(16Q24.3) WILD-TYPE     27     28     43     66     13
D59V2, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           74                             27
  CLUS_2                          124                             28
  CLUS_3                           71                             43
  CLUS_4                           22                             66
  CLUS_5                           45                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED      166    292     75    121     38
  DEL PEAK 30(16Q24.3) WILD-TYPE     94    120     18    144     11
D59V3, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          166                             94
  CLUS_2                          292                            120
  CLUS_3                           75                             18
  CLUS_4                          121                            144
  CLUS_5                           38                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED       53    152    118     61     72
  DEL PEAK 30(16Q24.3) WILD-TYPE     79     45     59     27     56
D59V4, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                          152                             45
  CLUS_3                          118                             59
  CLUS_4                           61                             27
  CLUS_5                           72                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       64    103     84
  DEL PEAK 30(16Q24.3) WILD-TYPE     85     29     33
D59V5, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           64                             85
  CLUS_2                          103                             29
  CLUS_3                           84                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED       54     80     28     74     15
  DEL PEAK 30(16Q24.3) WILD-TYPE     10     26     62     33     16
D59V6, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           54                             10
  CLUS_2                           80                             26
  CLUS_3                           28                             62
  CLUS_4                           74                             33
  CLUS_5                           15                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED      383    119    186
  DEL PEAK 30(16Q24.3) WILD-TYPE    160    179     46
D59V7, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          383                            160
  CLUS_2                          119                            179
  CLUS_3                          186                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q24.3) MUTATED      156    100    246     98     60     28
  DEL PEAK 30(16Q24.3) WILD-TYPE     63     64     60     43    123     32
D59V8, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          156                             63
  CLUS_2                          100                             64
  CLUS_3                          246                             60
  CLUS_4                           98                             43
  CLUS_5                           60                            123
  CLUS_6                           28                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED      151    181    348
  DEL PEAK 30(16Q24.3) WILD-TYPE    180     72    128
D59V9, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          151                            180
  CLUS_2                          181                             72
  CLUS_3                          348                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(16Q24.3) MUTATED      139     78    240    111     62     50
  DEL PEAK 30(16Q24.3) WILD-TYPE     92     82     82     16     24     84
D59V10, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          139                             92
  CLUS_2                           78                             82
  CLUS_3                          240                             82
  CLUS_4                          111                             16
  CLUS_5                           62                             24
  CLUS_6                           50                             84
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED      119     59     68     78     92
  DEL PEAK 30(16Q24.3) WILD-TYPE     61     80     31     33     41
D59V11, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          119                             61
  CLUS_2                           59                             80
  CLUS_3                           68                             31
  CLUS_4                           78                             33
  CLUS_5                           92                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED      154    177     85
  DEL PEAK 30(16Q24.3) WILD-TYPE    151     70     25
D59V12, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                          154                            151
  CLUS_2                          177                             70
  CLUS_3                           85                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 31(17P12) MUTATED       14     27     78     65     33     62     15
  DEL PEAK 31(17P12) WILD-TYPE      7      9     41     31     76     10      5
                              vv
clus                           CLUS_8
  DEL PEAK 31(17P12) MUTATED       24
  DEL PEAK 31(17P12) WILD-TYPE     16
D60V1, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         14                            7
  CLUS_2                         27                            9
  CLUS_3                         78                           41
  CLUS_4                         65                           31
  CLUS_5                         33                           76
  CLUS_6                         62                           10
  CLUS_7                         15                            5
  CLUS_8                         24                           16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED       69     86     93     58     12
  DEL PEAK 31(17P12) WILD-TYPE     32     66     21     30     46
D60V2, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         69                           32
  CLUS_2                         86                           66
  CLUS_3                         93                           21
  CLUS_4                         58                           30
  CLUS_5                         12                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED      208    161     42    209     30
  DEL PEAK 31(17P12) WILD-TYPE     52    251     51     56     19
D60V3, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        208                           52
  CLUS_2                        161                          251
  CLUS_3                         42                           51
  CLUS_4                        209                           56
  CLUS_5                         30                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED       87     98    133     43     65
  DEL PEAK 31(17P12) WILD-TYPE     45     99     44     45     63
D60V4, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         87                           45
  CLUS_2                         98                           99
  CLUS_3                        133                           44
  CLUS_4                         43                           45
  CLUS_5                         65                           63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED      116     66     66
  DEL PEAK 31(17P12) WILD-TYPE     33     66     51
D60V5, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        116                           33
  CLUS_2                         66                           66
  CLUS_3                         66                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED       23     57     65     77     26
  DEL PEAK 31(17P12) WILD-TYPE     41     49     25     30      5
D60V6, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         23                           41
  CLUS_2                         57                           49
  CLUS_3                         65                           25
  CLUS_4                         77                           30
  CLUS_5                         26                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED      316    214    116
  DEL PEAK 31(17P12) WILD-TYPE    227     84    116
D60V7, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        316                          227
  CLUS_2                        214                           84
  CLUS_3                        116                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17P12) MUTATED      146    135    173     28    116     48
  DEL PEAK 31(17P12) WILD-TYPE     73     29    133    113     67     12
D60V8, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        146                           73
  CLUS_2                        135                           29
  CLUS_3                        173                          133
  CLUS_4                         28                          113
  CLUS_5                        116                           67
  CLUS_6                         48                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED      238    130    271
  DEL PEAK 31(17P12) WILD-TYPE     93    123    205
D60V9, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        238                           93
  CLUS_2                        130                          123
  CLUS_3                        271                          205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17P12) MUTATED      160    108    168     70     40     93
  DEL PEAK 31(17P12) WILD-TYPE     71     52    154     57     46     41
D60V10, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        160                           71
  CLUS_2                        108                           52
  CLUS_3                        168                          154
  CLUS_4                         70                           57
  CLUS_5                         40                           46
  CLUS_6                         93                           41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17P12) MUTATED      110     92     49     59     83
  DEL PEAK 31(17P12) WILD-TYPE     70     47     50     52     50
D60V11, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        110                           70
  CLUS_2                         92                           47
  CLUS_3                         49                           50
  CLUS_4                         59                           52
  CLUS_5                         83                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17P12) MUTATED      193    140     60
  DEL PEAK 31(17P12) WILD-TYPE    112    107     50
D60V12, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        193                          112
  CLUS_2                        140                          107
  CLUS_3                         60                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q21.31) MUTATED        7     17     28     53     13     50
  DEL PEAK 32(17Q21.31) WILD-TYPE     14     19     91     43     96     22
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 32(17Q21.31) MUTATED        9     15
  DEL PEAK 32(17Q21.31) WILD-TYPE     11     25
D61V1, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                             7                              14
  CLUS_2                            17                              19
  CLUS_3                            28                              91
  CLUS_4                            53                              43
  CLUS_5                            13                              96
  CLUS_6                            50                              22
  CLUS_7                             9                              11
  CLUS_8                            15                              25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17Q21.31) MUTATED       24     49     70     46      3
  DEL PEAK 32(17Q21.31) WILD-TYPE     77    103     44     42     55
D61V2, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            24                              77
  CLUS_2                            49                             103
  CLUS_3                            70                              44
  CLUS_4                            46                              42
  CLUS_5                             3                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17Q21.31) MUTATED       85     84     23    170      9
  DEL PEAK 32(17Q21.31) WILD-TYPE    175    328     70     95     40
D61V3, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            85                             175
  CLUS_2                            84                             328
  CLUS_3                            23                              70
  CLUS_4                           170                              95
  CLUS_5                             9                              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17Q21.31) MUTATED       81     30     63     18     40
  DEL PEAK 32(17Q21.31) WILD-TYPE     51    167    114     70     88
D61V4, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            81                              51
  CLUS_2                            30                             167
  CLUS_3                            63                             114
  CLUS_4                            18                              70
  CLUS_5                            40                              88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED       90     24     44
  DEL PEAK 32(17Q21.31) WILD-TYPE     59    108     73
D61V5, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            90                              59
  CLUS_2                            24                             108
  CLUS_3                            44                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17Q21.31) MUTATED       10     34     52     36     26
  DEL PEAK 32(17Q21.31) WILD-TYPE     54     72     38     71      5
D61V6, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            10                              54
  CLUS_2                            34                              72
  CLUS_3                            52                              38
  CLUS_4                            36                              71
  CLUS_5                            26                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED      142    174     54
  DEL PEAK 32(17Q21.31) WILD-TYPE    401    124    178
D61V7, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                           142                             401
  CLUS_2                           174                             124
  CLUS_3                            54                             178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q21.31) MUTATED       46     91     89      9     96     39
  DEL PEAK 32(17Q21.31) WILD-TYPE    173     73    217    132     87     21
D61V8, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            46                             173
  CLUS_2                            91                              73
  CLUS_3                            89                             217
  CLUS_4                             9                             132
  CLUS_5                            96                              87
  CLUS_6                            39                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED      177     61    125
  DEL PEAK 32(17Q21.31) WILD-TYPE    154    192    351
D61V9, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                           177                             154
  CLUS_2                            61                             192
  CLUS_3                           125                             351
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q21.31) MUTATED      103     70     68     32     11     79
  DEL PEAK 32(17Q21.31) WILD-TYPE    128     90    254     95     75     55
D61V10, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                           103                             128
  CLUS_2                            70                              90
  CLUS_3                            68                             254
  CLUS_4                            32                              95
  CLUS_5                            11                              75
  CLUS_6                            79                              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(17Q21.31) MUTATED       55     76     19     30     46
  DEL PEAK 32(17Q21.31) WILD-TYPE    125     63     80     81     87
D61V11, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                            55                             125
  CLUS_2                            76                              63
  CLUS_3                            19                              80
  CLUS_4                            30                              81
  CLUS_5                            46                              87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q21.31) MUTATED      128     70     28
  DEL PEAK 32(17Q21.31) WILD-TYPE    177    177     82
D61V12, multiclass
        clus
vv       DEL PEAK 32(17Q21.31) MUTATED DEL PEAK 32(17Q21.31) WILD-TYPE
  CLUS_1                           128                             177
  CLUS_2                            70                             177
  CLUS_3                            28                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED        6     13     38     38     18     37      6
  DEL PEAK 33(18Q23) WILD-TYPE     15     23     81     58     91     35     14
                              vv
clus                           CLUS_8
  DEL PEAK 33(18Q23) MUTATED        9
  DEL PEAK 33(18Q23) WILD-TYPE     31
D62V1, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                          6                           15
  CLUS_2                         13                           23
  CLUS_3                         38                           81
  CLUS_4                         38                           58
  CLUS_5                         18                           91
  CLUS_6                         37                           35
  CLUS_7                          6                           14
  CLUS_8                          9                           31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(18Q23) MUTATED       31     35     54     35     10
  DEL PEAK 33(18Q23) WILD-TYPE     70    117     60     53     48
D62V2, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         31                           70
  CLUS_2                         35                          117
  CLUS_3                         54                           60
  CLUS_4                         35                           53
  CLUS_5                         10                           48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(18Q23) MUTATED      110     68     32    131     13
  DEL PEAK 33(18Q23) WILD-TYPE    150    344     61    134     36
D62V3, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        110                          150
  CLUS_2                         68                          344
  CLUS_3                         32                           61
  CLUS_4                        131                          134
  CLUS_5                         13                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(18Q23) MUTATED       59     47     88     17     30
  DEL PEAK 33(18Q23) WILD-TYPE     73    150     89     71     98
D62V4, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         59                           73
  CLUS_2                         47                          150
  CLUS_3                         88                           89
  CLUS_4                         17                           71
  CLUS_5                         30                           98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       63     36     29
  DEL PEAK 33(18Q23) WILD-TYPE     86     96     88
D62V5, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         63                           86
  CLUS_2                         36                           96
  CLUS_3                         29                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(18Q23) MUTATED       13     29     32     45      9
  DEL PEAK 33(18Q23) WILD-TYPE     51     77     58     62     22
D62V6, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         13                           51
  CLUS_2                         29                           77
  CLUS_3                         32                           58
  CLUS_4                         45                           62
  CLUS_5                          9                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED      171    133     47
  DEL PEAK 33(18Q23) WILD-TYPE    372    165    185
D62V7, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        171                          372
  CLUS_2                        133                          165
  CLUS_3                         47                          185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(18Q23) MUTATED       52     95     81     19     77     27
  DEL PEAK 33(18Q23) WILD-TYPE    167     69    225    122    106     33
D62V8, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         52                          167
  CLUS_2                         95                           69
  CLUS_3                         81                          225
  CLUS_4                         19                          122
  CLUS_5                         77                          106
  CLUS_6                         27                           33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED      144     63    143
  DEL PEAK 33(18Q23) WILD-TYPE    187    190    333
D62V9, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        144                          187
  CLUS_2                         63                          190
  CLUS_3                        143                          333
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(18Q23) MUTATED       89     76     81     32     18     54
  DEL PEAK 33(18Q23) WILD-TYPE    142     84    241     95     68     80
D62V10, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         89                          142
  CLUS_2                         76                           84
  CLUS_3                         81                          241
  CLUS_4                         32                           95
  CLUS_5                         18                           68
  CLUS_6                         54                           80
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(18Q23) MUTATED       61     62     26     27     39
  DEL PEAK 33(18Q23) WILD-TYPE    119     77     73     84     94
D62V11, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         61                          119
  CLUS_2                         62                           77
  CLUS_3                         26                           73
  CLUS_4                         27                           84
  CLUS_5                         39                           94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED      109     77     29
  DEL PEAK 33(18Q23) WILD-TYPE    196    170     81
D62V12, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        109                          196
  CLUS_2                         77                          170
  CLUS_3                         29                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 34(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        7     10     48     57     13     35
  DEL PEAK 34(19P13.3) WILD-TYPE     14     26     71     39     96     37
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 34(19P13.3) MUTATED        6      6
  DEL PEAK 34(19P13.3) WILD-TYPE     14     34
D63V1, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            7                             14
  CLUS_2                           10                             26
  CLUS_3                           48                             71
  CLUS_4                           57                             39
  CLUS_5                           13                             96
  CLUS_6                           35                             37
  CLUS_7                            6                             14
  CLUS_8                            6                             34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19P13.3) MUTATED       44     28     54     53      3
  DEL PEAK 34(19P13.3) WILD-TYPE     57    124     60     35     55
D63V2, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           44                             57
  CLUS_2                           28                            124
  CLUS_3                           54                             60
  CLUS_4                           53                             35
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19P13.3) MUTATED      133     37     14    162     17
  DEL PEAK 34(19P13.3) WILD-TYPE    127    375     79    103     32
D63V3, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          133                            127
  CLUS_2                           37                            375
  CLUS_3                           14                             79
  CLUS_4                          162                            103
  CLUS_5                           17                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19P13.3) MUTATED       74     34     68     12     34
  DEL PEAK 34(19P13.3) WILD-TYPE     58    163    109     76     94
D63V4, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           74                             58
  CLUS_2                           34                            163
  CLUS_3                           68                            109
  CLUS_4                           12                             76
  CLUS_5                           34                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       81     36     32
  DEL PEAK 34(19P13.3) WILD-TYPE     68     96     85
D63V5, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           81                             68
  CLUS_2                           36                             96
  CLUS_3                           32                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19P13.3) MUTATED        6     31     50     45     17
  DEL PEAK 34(19P13.3) WILD-TYPE     58     75     40     62     14
D63V6, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                           31                             75
  CLUS_3                           50                             40
  CLUS_4                           45                             62
  CLUS_5                           17                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED      175    157     29
  DEL PEAK 34(19P13.3) WILD-TYPE    368    141    203
D63V7, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          175                            368
  CLUS_2                          157                            141
  CLUS_3                           29                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED       77     88     58     10    108     20
  DEL PEAK 34(19P13.3) WILD-TYPE    142     76    248    131     75     40
D63V8, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           77                            142
  CLUS_2                           88                             76
  CLUS_3                           58                            248
  CLUS_4                           10                            131
  CLUS_5                          108                             75
  CLUS_6                           20                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED      187     47    119
  DEL PEAK 34(19P13.3) WILD-TYPE    144    206    357
D63V9, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          187                            144
  CLUS_2                           47                            206
  CLUS_3                          119                            357
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED       96     74     49     26     23     85
  DEL PEAK 34(19P13.3) WILD-TYPE    135     86    273    101     63     49
D63V10, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           96                            135
  CLUS_2                           74                             86
  CLUS_3                           49                            273
  CLUS_4                           26                            101
  CLUS_5                           23                             63
  CLUS_6                           85                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19P13.3) MUTATED       62     82     17     18     37
  DEL PEAK 34(19P13.3) WILD-TYPE    118     57     82     93     96
D63V11, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           62                            118
  CLUS_2                           82                             57
  CLUS_3                           17                             82
  CLUS_4                           18                             93
  CLUS_5                           37                             96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED      139     60     17
  DEL PEAK 34(19P13.3) WILD-TYPE    166    187     93
D63V12, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          139                            166
  CLUS_2                           60                            187
  CLUS_3                           17                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 35(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.32) MUTATED        4      7     23     26      7     28
  DEL PEAK 35(19Q13.32) WILD-TYPE     17     29     96     70    102     44
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 35(19Q13.32) MUTATED        1      3
  DEL PEAK 35(19Q13.32) WILD-TYPE     19     37
D64V1, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                             4                              17
  CLUS_2                             7                              29
  CLUS_3                            23                              96
  CLUS_4                            26                              70
  CLUS_5                             7                             102
  CLUS_6                            28                              44
  CLUS_7                             1                              19
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.32) MUTATED       26     11     36     24      2
  DEL PEAK 35(19Q13.32) WILD-TYPE     75    141     78     64     56
D64V2, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            26                              75
  CLUS_2                            11                             141
  CLUS_3                            36                              78
  CLUS_4                            24                              64
  CLUS_5                             2                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.32) MUTATED       88     23      8     89      8
  DEL PEAK 35(19Q13.32) WILD-TYPE    172    389     85    176     41
D64V3, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            88                             172
  CLUS_2                            23                             389
  CLUS_3                             8                              85
  CLUS_4                            89                             176
  CLUS_5                             8                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.32) MUTATED       47     19     47      8     18
  DEL PEAK 35(19Q13.32) WILD-TYPE     85    178    130     80    110
D64V4, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            47                              85
  CLUS_2                            19                             178
  CLUS_3                            47                             130
  CLUS_4                             8                              80
  CLUS_5                            18                             110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.32) MUTATED       45     20     15
  DEL PEAK 35(19Q13.32) WILD-TYPE    104    112    102
D64V5, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            45                             104
  CLUS_2                            20                             112
  CLUS_3                            15                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.32) MUTATED        4     12     30     23     11
  DEL PEAK 35(19Q13.32) WILD-TYPE     60     94     60     84     20
D64V6, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                             4                              60
  CLUS_2                            12                              94
  CLUS_3                            30                              60
  CLUS_4                            23                              84
  CLUS_5                            11                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.32) MUTATED      103     99     13
  DEL PEAK 35(19Q13.32) WILD-TYPE    440    199    219
D64V7, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                           103                             440
  CLUS_2                            99                             199
  CLUS_3                            13                             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.32) MUTATED       50     56     25      8     58     18
  DEL PEAK 35(19Q13.32) WILD-TYPE    169    108    281    133    125     42
D64V8, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            50                             169
  CLUS_2                            56                             108
  CLUS_3                            25                             281
  CLUS_4                             8                             133
  CLUS_5                            58                             125
  CLUS_6                            18                              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.32) MUTATED      109     27     73
  DEL PEAK 35(19Q13.32) WILD-TYPE    222    226    403
D64V9, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                           109                             222
  CLUS_2                            27                             226
  CLUS_3                            73                             403
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.32) MUTATED       62     44     21     20     16     46
  DEL PEAK 35(19Q13.32) WILD-TYPE    169    116    301    107     70     88
D64V10, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            62                             169
  CLUS_2                            44                             116
  CLUS_3                            21                             301
  CLUS_4                            20                             107
  CLUS_5                            16                              70
  CLUS_6                            46                              88
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.32) MUTATED       43     50     16      7     18
  DEL PEAK 35(19Q13.32) WILD-TYPE    137     89     83    104    115
D64V11, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            43                             137
  CLUS_2                            50                              89
  CLUS_3                            16                              83
  CLUS_4                             7                             104
  CLUS_5                            18                             115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.32) MUTATED       92     36      6
  DEL PEAK 35(19Q13.32) WILD-TYPE    213    211    104
D64V12, multiclass
        clus
vv       DEL PEAK 35(19Q13.32) MUTATED DEL PEAK 35(19Q13.32) WILD-TYPE
  CLUS_1                            92                             213
  CLUS_2                            36                             211
  CLUS_3                             6                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 36(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 36(20P13) MUTATED        1      3     28     25      3     16      3
  DEL PEAK 36(20P13) WILD-TYPE     20     33     91     71    106     56     17
                              vv
clus                           CLUS_8
  DEL PEAK 36(20P13) MUTATED        1
  DEL PEAK 36(20P13) WILD-TYPE     39
D65V1, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                          1                           20
  CLUS_2                          3                           33
  CLUS_3                         28                           91
  CLUS_4                         25                           71
  CLUS_5                          3                          106
  CLUS_6                         16                           56
  CLUS_7                          3                           17
  CLUS_8                          1                           39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(20P13) MUTATED       23      9     25     23      0
  DEL PEAK 36(20P13) WILD-TYPE     78    143     89     65     58
D65V2, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         23                           78
  CLUS_2                          9                          143
  CLUS_3                         25                           89
  CLUS_4                         23                           65
  CLUS_5                          0                           58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(20P13) MUTATED       46     20      7     78      9
  DEL PEAK 36(20P13) WILD-TYPE    214    392     86    187     40
D65V3, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         46                          214
  CLUS_2                         20                          392
  CLUS_3                          7                           86
  CLUS_4                         78                          187
  CLUS_5                          9                           40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(20P13) MUTATED       44     11     29      8     10
  DEL PEAK 36(20P13) WILD-TYPE     88    186    148     80    118
D65V4, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         44                           88
  CLUS_2                         11                          186
  CLUS_3                         29                          148
  CLUS_4                          8                           80
  CLUS_5                         10                          118
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(20P13) MUTATED       37     10     17
  DEL PEAK 36(20P13) WILD-TYPE    112    122    100
D65V5, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         37                          112
  CLUS_2                         10                          122
  CLUS_3                         17                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(20P13) MUTATED        5      8     24     20      7
  DEL PEAK 36(20P13) WILD-TYPE     59     98     66     87     24
D65V6, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                          5                           59
  CLUS_2                          8                           98
  CLUS_3                         24                           66
  CLUS_4                         20                           87
  CLUS_5                          7                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(20P13) MUTATED       69     81      9
  DEL PEAK 36(20P13) WILD-TYPE    474    217    223
D65V7, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         69                          474
  CLUS_2                         81                          217
  CLUS_3                          9                          223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(20P13) MUTATED       35     33     21      3     56     11
  DEL PEAK 36(20P13) WILD-TYPE    184    131    285    138    127     49
D65V8, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         35                          184
  CLUS_2                         33                          131
  CLUS_3                         21                          285
  CLUS_4                          3                          138
  CLUS_5                         56                          127
  CLUS_6                         11                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(20P13) MUTATED       88     16     47
  DEL PEAK 36(20P13) WILD-TYPE    243    237    429
D65V9, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         88                          243
  CLUS_2                         16                          237
  CLUS_3                         47                          429
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(20P13) MUTATED       36     36     16      7     13     43
  DEL PEAK 36(20P13) WILD-TYPE    195    124    306    120     73     91
D65V10, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         36                          195
  CLUS_2                         36                          124
  CLUS_3                         16                          306
  CLUS_4                          7                          120
  CLUS_5                         13                           73
  CLUS_6                         43                           91
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(20P13) MUTATED       21     46      9      6     11
  DEL PEAK 36(20P13) WILD-TYPE    159     93     90    105    122
D65V11, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         21                          159
  CLUS_2                         46                           93
  CLUS_3                          9                           90
  CLUS_4                          6                          105
  CLUS_5                         11                          122
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(20P13) MUTATED       72     20      1
  DEL PEAK 36(20P13) WILD-TYPE    233    227    109
D65V12, multiclass
        clus
vv       DEL PEAK 36(20P13) MUTATED DEL PEAK 36(20P13) WILD-TYPE
  CLUS_1                         72                          233
  CLUS_2                         20                          227
  CLUS_3                          1                          109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 37(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q11.2) MUTATED        3     11     37     16     11     23
  DEL PEAK 37(21Q11.2) WILD-TYPE     18     25     82     80     98     49
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 37(21Q11.2) MUTATED        3      4
  DEL PEAK 37(21Q11.2) WILD-TYPE     17     36
D66V1, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                           11                             25
  CLUS_3                           37                             82
  CLUS_4                           16                             80
  CLUS_5                           11                             98
  CLUS_6                           23                             49
  CLUS_7                            3                             17
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(21Q11.2) MUTATED       31     22     32     15      8
  DEL PEAK 37(21Q11.2) WILD-TYPE     70    130     82     73     50
D66V2, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           22                            130
  CLUS_3                           32                             82
  CLUS_4                           15                             73
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(21Q11.2) MUTATED       89     33     17     68     10
  DEL PEAK 37(21Q11.2) WILD-TYPE    171    379     76    197     39
D66V3, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           89                            171
  CLUS_2                           33                            379
  CLUS_3                           17                             76
  CLUS_4                           68                            197
  CLUS_5                           10                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(21Q11.2) MUTATED       22     38     53      8     18
  DEL PEAK 37(21Q11.2) WILD-TYPE    110    159    124     80    110
D66V4, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           22                            110
  CLUS_2                           38                            159
  CLUS_3                           53                            124
  CLUS_4                            8                             80
  CLUS_5                           18                            110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q11.2) MUTATED       43     25     21
  DEL PEAK 37(21Q11.2) WILD-TYPE    106    107     96
D66V5, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           43                            106
  CLUS_2                           25                            107
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(21Q11.2) MUTATED        9     17     18     36      9
  DEL PEAK 37(21Q11.2) WILD-TYPE     55     89     72     71     22
D66V6, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           17                             89
  CLUS_3                           18                             72
  CLUS_4                           36                             71
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q11.2) MUTATED      126     63     26
  DEL PEAK 37(21Q11.2) WILD-TYPE    417    235    206
D66V7, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                          126                            417
  CLUS_2                           63                            235
  CLUS_3                           26                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q11.2) MUTATED       51     57     48     14     31     14
  DEL PEAK 37(21Q11.2) WILD-TYPE    168    107    258    127    152     46
D66V8, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           51                            168
  CLUS_2                           57                            107
  CLUS_3                           48                            258
  CLUS_4                           14                            127
  CLUS_5                           31                            152
  CLUS_6                           14                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q11.2) MUTATED       81     35     96
  DEL PEAK 37(21Q11.2) WILD-TYPE    250    218    380
D66V9, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           81                            250
  CLUS_2                           35                            218
  CLUS_3                           96                            380
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q11.2) MUTATED       61     40     49     29     11     22
  DEL PEAK 37(21Q11.2) WILD-TYPE    170    120    273     98     75    112
D66V10, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           61                            170
  CLUS_2                           40                            120
  CLUS_3                           49                            273
  CLUS_4                           29                             98
  CLUS_5                           11                             75
  CLUS_6                           22                            112
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(21Q11.2) MUTATED       47     28     15     13     26
  DEL PEAK 37(21Q11.2) WILD-TYPE    133    111     84     98    107
D66V11, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           47                            133
  CLUS_2                           28                            111
  CLUS_3                           15                             84
  CLUS_4                           13                             98
  CLUS_5                           26                            107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q11.2) MUTATED       70     41     18
  DEL PEAK 37(21Q11.2) WILD-TYPE    235    206     92
D66V12, multiclass
        clus
vv       DEL PEAK 37(21Q11.2) MUTATED DEL PEAK 37(21Q11.2) WILD-TYPE
  CLUS_1                           70                            235
  CLUS_2                           41                            206
  CLUS_3                           18                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 38(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED        6     18     64     41     47     29
  DEL PEAK 38(22Q13.32) WILD-TYPE     15     18     55     55     62     43
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 38(22Q13.32) MUTATED       12     18
  DEL PEAK 38(22Q13.32) WILD-TYPE      8     22
D67V1, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                             6                              15
  CLUS_2                            18                              18
  CLUS_3                            64                              55
  CLUS_4                            41                              55
  CLUS_5                            47                              62
  CLUS_6                            29                              43
  CLUS_7                            12                               8
  CLUS_8                            18                              22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(22Q13.32) MUTATED       62     68     46     37     22
  DEL PEAK 38(22Q13.32) WILD-TYPE     39     84     68     51     36
D67V2, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            62                              39
  CLUS_2                            68                              84
  CLUS_3                            46                              68
  CLUS_4                            37                              51
  CLUS_5                            22                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(22Q13.32) MUTATED      145    141     58    126     22
  DEL PEAK 38(22Q13.32) WILD-TYPE    115    271     35    139     27
D67V3, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           145                             115
  CLUS_2                           141                             271
  CLUS_3                            58                              35
  CLUS_4                           126                             139
  CLUS_5                            22                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(22Q13.32) MUTATED       67     85     93     34     52
  DEL PEAK 38(22Q13.32) WILD-TYPE     65    112     84     54     76
D67V4, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            67                              65
  CLUS_2                            85                             112
  CLUS_3                            93                              84
  CLUS_4                            34                              54
  CLUS_5                            52                              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       66     72     53
  DEL PEAK 38(22Q13.32) WILD-TYPE     83     60     64
D67V5, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            66                              83
  CLUS_2                            72                              60
  CLUS_3                            53                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(22Q13.32) MUTATED       38     48     37     59      9
  DEL PEAK 38(22Q13.32) WILD-TYPE     26     58     53     48     22
D67V6, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            38                              26
  CLUS_2                            48                              58
  CLUS_3                            37                              53
  CLUS_4                            59                              48
  CLUS_5                             9                              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED      277    123     89
  DEL PEAK 38(22Q13.32) WILD-TYPE    266    175    143
D67V7, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           277                             266
  CLUS_2                           123                             175
  CLUS_3                            89                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED      119     89    131     54     77     19
  DEL PEAK 38(22Q13.32) WILD-TYPE    100     75    175     87    106     41
D67V8, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           119                             100
  CLUS_2                            89                              75
  CLUS_3                           131                             175
  CLUS_4                            54                              87
  CLUS_5                            77                             106
  CLUS_6                            19                              41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED      152     98    233
  DEL PEAK 38(22Q13.32) WILD-TYPE    179    155    243
D67V9, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           152                             179
  CLUS_2                            98                             155
  CLUS_3                           233                             243
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED      117     76    122     75     37     56
  DEL PEAK 38(22Q13.32) WILD-TYPE    114     84    200     52     49     78
D67V10, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           117                             114
  CLUS_2                            76                              84
  CLUS_3                           122                             200
  CLUS_4                            75                              52
  CLUS_5                            37                              49
  CLUS_6                            56                              78
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(22Q13.32) MUTATED      103     63     47     38     56
  DEL PEAK 38(22Q13.32) WILD-TYPE     77     76     52     73     77
D67V11, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           103                              77
  CLUS_2                            63                              76
  CLUS_3                            47                              52
  CLUS_4                            38                              73
  CLUS_5                            56                              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED      156    104     47
  DEL PEAK 38(22Q13.32) WILD-TYPE    149    143     63
D67V12, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           156                             149
  CLUS_2                           104                             143
  CLUS_3                            47                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
