[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTCESC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/11589698/CESC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/11555655/transformed.cor.cli.txt"

nPatients in clinical file=307, in cluster file=295, common to both=295
[1]  63 295
[1] "AMP PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           96                           199 
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           96                           199 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           137 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           137 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        152                         143 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        152                         143 
[1] "AMP PEAK  4(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           79                           216 
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           79                           216 
[1] "AMP PEAK  5(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           41                           254 
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           41                           254 
[1] "AMP PEAK  6(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                           227                             68 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                           227                             68 
[1] "AMP PEAK  7(3Q28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE 
                        224                          71 
  AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE 
                        224                          71 
[1] "AMP PEAK  8(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                         21                         274 
  AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE 
                         21                         274 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           138                            157 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           138                            157 
[1] "AMP PEAK 10(6P21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE 
                            82                            213 
  AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE 
                            82                            213 
[1] "AMP PEAK 11(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           52                           243 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           52                           243 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           127                            168 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           127                            168 
[1] "AMP PEAK 13(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           63                           232 
  AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE 
                           63                           232 
[1] "AMP PEAK 14(11P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE 
                          23                          272 
  AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE 
                          23                          272 
[1] "AMP PEAK 15(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                            41                            254 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                            41                            254 
[1] "AMP PEAK 16(11Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE 
                            47                            248 
  AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE 
                            47                            248 
[1] "AMP PEAK 17(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE 
                            65                            230 
  AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE 
                            65                            230 
[1] "AMP PEAK 18(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          69                          226 
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          69                          226 
[1] "AMP PEAK 19(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE 
                            76                            219 
  AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE 
                            76                            219 
[1] "AMP PEAK 20(16P13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE 
                             65                             230 
  AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE 
                             65                             230 
[1] "AMP PEAK 21(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE 
                          55                          240 
  AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE 
                          55                          240 
[1] "AMP PEAK 22(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE 
                            74                            221 
  AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE 
                            74                            221 
[1] "AMP PEAK 23(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE 
                            39                            256 
  AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE 
                            39                            256 
[1] "AMP PEAK 24(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE 
                            43                            252 
  AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE 
                            43                            252 
[1] "AMP PEAK 25(19Q13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE 
                             93                             202 
  AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE 
                             93                             202 
[1] "AMP PEAK 26(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                            135                             160 
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                            135                             160 
[1] "AMP PEAK 27(21Q22.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE 
                             48                             247 
  AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE 
                             48                             247 
[1] "AMP PEAK 28(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         75                         220 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                         75                         220 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            40                            255 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            40                            255 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           261 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           261 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           65                           230 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           65                           230 
[1] "DEL PEAK  4(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                          129                           166 
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                          129                           166 
[1] "DEL PEAK  5(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                          134                           161 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                          134                           161 
[1] "DEL PEAK  6(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE 
                          103                           192 
  DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE 
                          103                           192 
[1] "DEL PEAK  7(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          100                           195 
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          100                           195 
[1] "DEL PEAK  8(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE 
                          114                           181 
  DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE 
                          114                           181 
[1] "DEL PEAK  9(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           76                           219 
  DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE 
                           76                           219 
[1] "DEL PEAK 10(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE 
                           71                           224 
  DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE 
                           71                           224 
[1] "DEL PEAK 11(6P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE 
                           46                           249 
  DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE 
                           46                           249 
[1] "DEL PEAK 12(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        100                         195 
  DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE 
                        100                         195 
[1] "DEL PEAK 13(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                         60                         235 
  DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE 
                         60                         235 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          104                           191 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          104                           191 
[1] "DEL PEAK 15(8P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE 
                           97                           198 
  DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE 
                           97                           198 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             86                             209 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             86                             209 
[1] "DEL PEAK 17(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE 
                           102                            193 
  DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE 
                           102                            193 
[1] "DEL PEAK 18(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE 
                           162                            133 
  DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE 
                           162                            133 
[1] "DEL PEAK 19(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE 
                         160                          135 
  DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE 
                         160                          135 
[1] "DEL PEAK 20(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE 
                             98                             197 
  DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE 
                             98                             197 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           118                            177 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           118                            177 
[1] "DEL PEAK 22(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE 
                             50                             245 
  DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE 
                             50                             245 
[1] "DEL PEAK 23(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE 
                            70                            225 
  DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE 
                            70                            225 
[1] "DEL PEAK 24(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE 
                            53                            242 
  DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE 
                            53                            242 
[1] "DEL PEAK 25(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                            55                            240 
  DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE 
                            55                            240 
[1] "DEL PEAK 26(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE 
                         109                          186 
  DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE 
                         109                          186 
[1] "DEL PEAK 27(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE 
                            51                            244 
  DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE 
                            51                            244 
[1] "DEL PEAK 28(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            82                            213 
  DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE 
                            82                            213 
[1] "DEL PEAK 29(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                           105                            190 
  DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE 
                           105                            190 
[1] "DEL PEAK 30(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             38                             257 
  DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE 
                             38                             257 
[1] "DEL PEAK 31(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            36                            259 
  DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE 
                            36                            259 
[1] "DEL PEAK 32(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            58                            237 
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            58                            237 
[1] "DEL PEAK 33(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             88                             207 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             88                             207 
[1] "DEL PEAK 34(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           72                           223 
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           72                           223 
[1] "DEL PEAK 35(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            60                            235 
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            60                            235 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 295 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 295 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       28     26     42
  AMP PEAK  1(1P31.3) WILD-TYPE    101     47     51
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          26                            47
  CLUS_3                          42                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P31.3) MUTATED       13     14     19     16     12      4
  AMP PEAK  1(1P31.3) WILD-TYPE     44     27     26     36     24      9
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          13                            44
  CLUS_2                          14                            27
  CLUS_3                          19                            26
  CLUS_4                          16                            36
  CLUS_5                          12                            24
  CLUS_6                           4                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       21     41     16
  AMP PEAK  1(1P31.3) WILD-TYPE     56     60     49
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          21                            56
  CLUS_2                          41                            60
  CLUS_3                          16                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       13     59      6
  AMP PEAK  1(1P31.3) WILD-TYPE     43     95     27
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          13                            43
  CLUS_2                          59                            95
  CLUS_3                           6                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       36     27     33
  AMP PEAK  1(1P31.3) WILD-TYPE     63     50     86
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          36                            63
  CLUS_2                          27                            50
  CLUS_3                          33                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P31.3) MUTATED       12     36     32     10      6
  AMP PEAK  1(1P31.3) WILD-TYPE     48     59     40     15     37
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          36                            59
  CLUS_3                          32                            40
  CLUS_4                          10                            15
  CLUS_5                           6                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       41     26     21
  AMP PEAK  1(1P31.3) WILD-TYPE     84     51     59
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          41                            84
  CLUS_2                          26                            51
  CLUS_3                          21                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P31.3) MUTATED       15     20      9     44
  AMP PEAK  1(1P31.3) WILD-TYPE     49     30     17     98
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          20                            30
  CLUS_3                           9                            17
  CLUS_4                          44                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       49     42     67
  AMP PEAK  2(1Q21.3) WILD-TYPE     80     31     26
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          49                            80
  CLUS_2                          42                            31
  CLUS_3                          67                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       25     22     27     26     17     10
  AMP PEAK  2(1Q21.3) WILD-TYPE     32     19     18     26     19      3
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          25                            32
  CLUS_2                          22                            19
  CLUS_3                          27                            18
  CLUS_4                          26                            26
  CLUS_5                          17                            19
  CLUS_6                          10                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       36     62     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     41     39     36
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          36                            41
  CLUS_2                          62                            39
  CLUS_3                          29                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       25     87     15
  AMP PEAK  2(1Q21.3) WILD-TYPE     31     67     18
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          25                            31
  CLUS_2                          87                            67
  CLUS_3                          15                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       53     42     63
  AMP PEAK  2(1Q21.3) WILD-TYPE     46     35     56
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          53                            46
  CLUS_2                          42                            35
  CLUS_3                          63                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       23     62     42     16     15
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     33     30      9     28
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            37
  CLUS_2                          62                            33
  CLUS_3                          42                            30
  CLUS_4                          16                             9
  CLUS_5                          15                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       68     42     40
  AMP PEAK  2(1Q21.3) WILD-TYPE     57     35     40
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          68                            57
  CLUS_2                          42                            35
  CLUS_3                          40                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       26     30     18     76
  AMP PEAK  2(1Q21.3) WILD-TYPE     38     20      8     66
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          26                            38
  CLUS_2                          30                            20
  CLUS_3                          18                             8
  CLUS_4                          76                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       46     41     65
  AMP PEAK  3(1Q44) WILD-TYPE     83     32     28
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        46                          83
  CLUS_2                        41                          32
  CLUS_3                        65                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED       24     24     28     24     17     10
  AMP PEAK  3(1Q44) WILD-TYPE     33     17     17     28     19      3
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        24                          33
  CLUS_2                        24                          17
  CLUS_3                        28                          17
  CLUS_4                        24                          28
  CLUS_5                        17                          19
  CLUS_6                        10                           3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       37     63     27
  AMP PEAK  3(1Q44) WILD-TYPE     40     38     38
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        37                          40
  CLUS_2                        63                          38
  CLUS_3                        27                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       24     89     14
  AMP PEAK  3(1Q44) WILD-TYPE     32     65     19
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        24                          32
  CLUS_2                        89                          65
  CLUS_3                        14                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       52     41     59
  AMP PEAK  3(1Q44) WILD-TYPE     47     36     60
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        52                          47
  CLUS_2                        41                          36
  CLUS_3                        59                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       21     58     43     15     15
  AMP PEAK  3(1Q44) WILD-TYPE     39     37     29     10     28
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        21                          39
  CLUS_2                        58                          37
  CLUS_3                        43                          29
  CLUS_4                        15                          10
  CLUS_5                        15                          28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       62     44     38
  AMP PEAK  3(1Q44) WILD-TYPE     63     33     42
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        62                          63
  CLUS_2                        44                          33
  CLUS_3                        38                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       24     30     18     72
  AMP PEAK  3(1Q44) WILD-TYPE     40     20      8     70
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        24                          40
  CLUS_2                        30                          20
  CLUS_3                        18                           8
  CLUS_4                        72                          70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       21     35     23
  AMP PEAK  4(2P24.3) WILD-TYPE    108     38     70
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          21                           108
  CLUS_2                          35                            38
  CLUS_3                          23                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P24.3) MUTATED       20     12      5     16     10      2
  AMP PEAK  4(2P24.3) WILD-TYPE     37     29     40     36     26     11
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          20                            37
  CLUS_2                          12                            29
  CLUS_3                           5                            40
  CLUS_4                          16                            36
  CLUS_5                          10                            26
  CLUS_6                           2                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       25     19     21
  AMP PEAK  4(2P24.3) WILD-TYPE     52     82     44
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          25                            52
  CLUS_2                          19                            82
  CLUS_3                          21                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       20     33     12
  AMP PEAK  4(2P24.3) WILD-TYPE     36    121     21
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          20                            36
  CLUS_2                          33                           121
  CLUS_3                          12                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       30     13     36
  AMP PEAK  4(2P24.3) WILD-TYPE     69     64     83
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          30                            69
  CLUS_2                          13                            64
  CLUS_3                          36                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P24.3) MUTATED       21     26      6     13     13
  AMP PEAK  4(2P24.3) WILD-TYPE     39     69     66     12     30
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          21                            39
  CLUS_2                          26                            69
  CLUS_3                           6                            66
  CLUS_4                          13                            12
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       42     18     17
  AMP PEAK  4(2P24.3) WILD-TYPE     83     59     63
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          42                            83
  CLUS_2                          18                            59
  CLUS_3                          17                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       22      9      4     42
  AMP PEAK  4(2P24.3) WILD-TYPE     42     41     22    100
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                           9                            41
  CLUS_3                           4                            22
  CLUS_4                          42                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED        7     21     13
  AMP PEAK  5(2Q33.1) WILD-TYPE    122     52     80
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           7                           122
  CLUS_2                          21                            52
  CLUS_3                          13                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q33.1) MUTATED       12      4      2     12      4      3
  AMP PEAK  5(2Q33.1) WILD-TYPE     45     37     43     40     32     10
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          12                            45
  CLUS_2                           4                            37
  CLUS_3                           2                            43
  CLUS_4                          12                            40
  CLUS_5                           4                            32
  CLUS_6                           3                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       13      7     17
  AMP PEAK  5(2Q33.1) WILD-TYPE     64     94     48
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          13                            64
  CLUS_2                           7                            94
  CLUS_3                          17                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       11     18      8
  AMP PEAK  5(2Q33.1) WILD-TYPE     45    136     25
D5V4, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          11                            45
  CLUS_2                          18                           136
  CLUS_3                           8                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       17      7     17
  AMP PEAK  5(2Q33.1) WILD-TYPE     82     70    102
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          17                            82
  CLUS_2                           7                            70
  CLUS_3                          17                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q33.1) MUTATED       12     10      4      3     12
  AMP PEAK  5(2Q33.1) WILD-TYPE     48     85     68     22     31
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          10                            85
  CLUS_3                           4                            68
  CLUS_4                           3                            22
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q33.1) MUTATED       22     11      8
  AMP PEAK  5(2Q33.1) WILD-TYPE    103     66     72
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          22                           103
  CLUS_2                          11                            66
  CLUS_3                           8                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q33.1) MUTATED       10      7      2     22
  AMP PEAK  5(2Q33.1) WILD-TYPE     54     43     24    120
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                          10                            54
  CLUS_2                           7                            43
  CLUS_3                           2                            24
  CLUS_4                          22                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       77     57     93
  AMP PEAK  6(3Q26.31) WILD-TYPE     52     16      0
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           77                             52
  CLUS_2                           57                             16
  CLUS_3                           93                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.31) MUTATED       34     34     40     34     34     13
  AMP PEAK  6(3Q26.31) WILD-TYPE     23      7      5     18      2      0
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           34                             23
  CLUS_2                           34                              7
  CLUS_3                           40                              5
  CLUS_4                           34                             18
  CLUS_5                           34                              2
  CLUS_6                           13                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       51     92     45
  AMP PEAK  6(3Q26.31) WILD-TYPE     26      9     20
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           51                             26
  CLUS_2                           92                              9
  CLUS_3                           45                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       34    135     19
  AMP PEAK  6(3Q26.31) WILD-TYPE     22     19     14
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           34                             22
  CLUS_2                          135                             19
  CLUS_3                           19                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       73     64     90
  AMP PEAK  6(3Q26.31) WILD-TYPE     26     13     29
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           73                             26
  CLUS_2                           64                             13
  CLUS_3                           90                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.31) MUTATED       34     81     65     20     27
  AMP PEAK  6(3Q26.31) WILD-TYPE     26     14      7      5     16
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           34                             26
  CLUS_2                           81                             14
  CLUS_3                           65                              7
  CLUS_4                           20                              5
  CLUS_5                           27                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.31) MUTATED       87     63     66
  AMP PEAK  6(3Q26.31) WILD-TYPE     38     14     14
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           87                             38
  CLUS_2                           63                             14
  CLUS_3                           66                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.31) MUTATED       38     45     24    109
  AMP PEAK  6(3Q26.31) WILD-TYPE     26      5      2     33
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                           38                             26
  CLUS_2                           45                              5
  CLUS_3                           24                              2
  CLUS_4                          109                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(3Q28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       77     54     93
  AMP PEAK  7(3Q28) WILD-TYPE     52     19      0
D7V1, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        77                          52
  CLUS_2                        54                          19
  CLUS_3                        93                           0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(3Q28) MUTATED       32     33     39     35     35     13
  AMP PEAK  7(3Q28) WILD-TYPE     25      8      6     17      1      0
D7V2, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        32                          25
  CLUS_2                        33                           8
  CLUS_3                        39                           6
  CLUS_4                        35                          17
  CLUS_5                        35                           1
  CLUS_6                        13                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       49     91     46
  AMP PEAK  7(3Q28) WILD-TYPE     28     10     19
D7V3, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        49                          28
  CLUS_2                        91                          10
  CLUS_3                        46                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       32    134     20
  AMP PEAK  7(3Q28) WILD-TYPE     24     20     13
D7V4, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        32                          24
  CLUS_2                       134                          20
  CLUS_3                        20                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       71     63     90
  AMP PEAK  7(3Q28) WILD-TYPE     28     14     29
D7V5, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        71                          28
  CLUS_2                        63                          14
  CLUS_3                        90                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(3Q28) MUTATED       33     80     65     19     27
  AMP PEAK  7(3Q28) WILD-TYPE     27     15      7      6     16
D7V6, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        33                          27
  CLUS_2                        80                          15
  CLUS_3                        65                           7
  CLUS_4                        19                           6
  CLUS_5                        27                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(3Q28) MUTATED       85     62     66
  AMP PEAK  7(3Q28) WILD-TYPE     40     15     14
D7V7, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        85                          40
  CLUS_2                        62                          15
  CLUS_3                        66                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(3Q28) MUTATED       36     44     24    109
  AMP PEAK  7(3Q28) WILD-TYPE     28      6      2     33
D7V8, multiclass
        clus
vv       AMP PEAK  7(3Q28) MUTATED AMP PEAK  7(3Q28) WILD-TYPE
  CLUS_1                        36                          28
  CLUS_2                        44                           6
  CLUS_3                        24                           2
  CLUS_4                       109                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       10      4      7
  AMP PEAK  8(4Q12) WILD-TYPE    119     69     86
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        10                         119
  CLUS_2                         4                          69
  CLUS_3                         7                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(4Q12) MUTATED        5      2      1      3      3      4
  AMP PEAK  8(4Q12) WILD-TYPE     52     39     44     49     33      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         5                          52
  CLUS_2                         2                          39
  CLUS_3                         1                          44
  CLUS_4                         3                          49
  CLUS_5                         3                          33
  CLUS_6                         4                           9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        6      6      6
  AMP PEAK  8(4Q12) WILD-TYPE     71     95     59
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         6                          71
  CLUS_2                         6                          95
  CLUS_3                         6                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        6     10      2
  AMP PEAK  8(4Q12) WILD-TYPE     50    144     31
D8V4, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         6                          50
  CLUS_2                        10                         144
  CLUS_3                         2                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED        7      5      9
  AMP PEAK  8(4Q12) WILD-TYPE     92     72    110
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         7                          92
  CLUS_2                         5                          72
  CLUS_3                         9                         110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q12) MUTATED        4      9      2      3      3
  AMP PEAK  8(4Q12) WILD-TYPE     56     86     70     22     40
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         4                          56
  CLUS_2                         9                          86
  CLUS_3                         2                          70
  CLUS_4                         3                          22
  CLUS_5                         3                          40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q12) MUTATED       11      3      7
  AMP PEAK  8(4Q12) WILD-TYPE    114     74     73
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                        11                         114
  CLUS_2                         3                          74
  CLUS_3                         7                          73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q12) MUTATED        3      1      4     13
  AMP PEAK  8(4Q12) WILD-TYPE     61     49     22    129
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q12) MUTATED AMP PEAK  8(4Q12) WILD-TYPE
  CLUS_1                         3                          61
  CLUS_2                         1                          49
  CLUS_3                         4                          22
  CLUS_4                        13                         129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       34     60     44
  AMP PEAK  9(5P15.33) WILD-TYPE     95     13     49
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           34                             95
  CLUS_2                           60                             13
  CLUS_3                           44                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(5P15.33) MUTATED       18     19     20     33     15      3
  AMP PEAK  9(5P15.33) WILD-TYPE     39     22     25     19     21     10
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           18                             39
  CLUS_2                           19                             22
  CLUS_3                           20                             25
  CLUS_4                           33                             19
  CLUS_5                           15                             21
  CLUS_6                            3                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       24     45     39
  AMP PEAK  9(5P15.33) WILD-TYPE     53     56     26
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           24                             53
  CLUS_2                           45                             56
  CLUS_3                           39                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       16     69     23
  AMP PEAK  9(5P15.33) WILD-TYPE     40     85     10
D9V4, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           16                             40
  CLUS_2                           69                             85
  CLUS_3                           23                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       41     28     69
  AMP PEAK  9(5P15.33) WILD-TYPE     58     49     50
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           41                             58
  CLUS_2                           28                             49
  CLUS_3                           69                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       17     50     28     16     27
  AMP PEAK  9(5P15.33) WILD-TYPE     43     45     44      9     16
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           50                             45
  CLUS_3                           28                             44
  CLUS_4                           16                              9
  CLUS_5                           27                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       63     29     39
  AMP PEAK  9(5P15.33) WILD-TYPE     62     48     41
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           63                             62
  CLUS_2                           29                             48
  CLUS_3                           39                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       21     23      9     78
  AMP PEAK  9(5P15.33) WILD-TYPE     43     27     17     64
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           21                             43
  CLUS_2                           23                             27
  CLUS_3                            9                             17
  CLUS_4                           78                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       26     34     22
  AMP PEAK 10(6P21.33) WILD-TYPE    103     39     71
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           26                            103
  CLUS_2                           34                             39
  CLUS_3                           22                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6P21.33) MUTATED       21      6      8     19     10      1
  AMP PEAK 10(6P21.33) WILD-TYPE     36     35     37     33     26     12
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           21                             36
  CLUS_2                            6                             35
  CLUS_3                            8                             37
  CLUS_4                           19                             33
  CLUS_5                           10                             26
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       25     16     24
  AMP PEAK 10(6P21.33) WILD-TYPE     52     85     41
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           25                             52
  CLUS_2                           16                             85
  CLUS_3                           24                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       19     33     13
  AMP PEAK 10(6P21.33) WILD-TYPE     37    121     20
D10V4, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           19                             37
  CLUS_2                           33                            121
  CLUS_3                           13                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       30     19     33
  AMP PEAK 10(6P21.33) WILD-TYPE     69     58     86
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           19                             58
  CLUS_3                           33                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P21.33) MUTATED       17     21     15      8     21
  AMP PEAK 10(6P21.33) WILD-TYPE     43     74     57     17     22
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           21                             74
  CLUS_3                           15                             57
  CLUS_4                            8                             17
  CLUS_5                           21                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P21.33) MUTATED       36     17     25
  AMP PEAK 10(6P21.33) WILD-TYPE     89     60     55
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           36                             89
  CLUS_2                           17                             60
  CLUS_3                           25                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P21.33) MUTATED       18     11      9     40
  AMP PEAK 10(6P21.33) WILD-TYPE     46     39     17    102
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P21.33) MUTATED AMP PEAK 10(6P21.33) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           11                             39
  CLUS_3                            9                             17
  CLUS_4                           40                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       13     25     14
  AMP PEAK 11(7P11.2) WILD-TYPE    116     48     79
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          13                           116
  CLUS_2                          25                            48
  CLUS_3                          14                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7P11.2) MUTATED        6     10      7     17      3      1
  AMP PEAK 11(7P11.2) WILD-TYPE     51     31     38     35     33     12
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           6                            51
  CLUS_2                          10                            31
  CLUS_3                           7                            38
  CLUS_4                          17                            35
  CLUS_5                           3                            33
  CLUS_6                           1                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED        6     18     20
  AMP PEAK 11(7P11.2) WILD-TYPE     71     83     45
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           6                            71
  CLUS_2                          18                            83
  CLUS_3                          20                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED        5     30      9
  AMP PEAK 11(7P11.2) WILD-TYPE     51    124     24
D11V4, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                          30                           124
  CLUS_3                           9                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       12      6     34
  AMP PEAK 11(7P11.2) WILD-TYPE     87     71     85
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          12                            87
  CLUS_2                           6                            71
  CLUS_3                          34                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7P11.2) MUTATED        6     19      9      6     12
  AMP PEAK 11(7P11.2) WILD-TYPE     54     76     63     19     31
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           6                            54
  CLUS_2                          19                            76
  CLUS_3                           9                            63
  CLUS_4                           6                            19
  CLUS_5                          12                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7P11.2) MUTATED       22      7     20
  AMP PEAK 11(7P11.2) WILD-TYPE    103     70     60
D11V7, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          22                           103
  CLUS_2                           7                            70
  CLUS_3                          20                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7P11.2) MUTATED        6      4      5     34
  AMP PEAK 11(7P11.2) WILD-TYPE     58     46     21    108
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           6                            58
  CLUS_2                           4                            46
  CLUS_3                           5                            21
  CLUS_4                          34                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       50     37     40
  AMP PEAK 12(8Q24.21) WILD-TYPE     79     36     53
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           50                             79
  CLUS_2                           37                             36
  CLUS_3                           40                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       20     20     18     23     11      8
  AMP PEAK 12(8Q24.21) WILD-TYPE     37     21     27     29     25      5
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           20                             37
  CLUS_2                           20                             21
  CLUS_3                           18                             27
  CLUS_4                           23                             29
  CLUS_5                           11                             25
  CLUS_6                            8                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       28     45     27
  AMP PEAK 12(8Q24.21) WILD-TYPE     49     56     38
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           28                             49
  CLUS_2                           45                             56
  CLUS_3                           27                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       18     70     12
  AMP PEAK 12(8Q24.21) WILD-TYPE     38     84     21
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           18                             38
  CLUS_2                           70                             84
  CLUS_3                           12                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       40     27     60
  AMP PEAK 12(8Q24.21) WILD-TYPE     59     50     59
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           40                             59
  CLUS_2                           27                             50
  CLUS_3                           60                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       21     50     29      7     20
  AMP PEAK 12(8Q24.21) WILD-TYPE     39     45     43     18     23
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           50                             45
  CLUS_3                           29                             43
  CLUS_4                            7                             18
  CLUS_5                           20                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       61     23     38
  AMP PEAK 12(8Q24.21) WILD-TYPE     64     54     42
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           61                             64
  CLUS_2                           23                             54
  CLUS_3                           38                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       17     16     15     74
  AMP PEAK 12(8Q24.21) WILD-TYPE     47     34     11     68
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           16                             34
  CLUS_3                           15                             11
  CLUS_4                           74                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       24     20     19
  AMP PEAK 13(9P24.1) WILD-TYPE    105     53     74
D13V1, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          24                           105
  CLUS_2                          20                            53
  CLUS_3                          19                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(9P24.1) MUTATED        8      8     13     14      7      2
  AMP PEAK 13(9P24.1) WILD-TYPE     49     33     32     38     29     11
D13V2, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            49
  CLUS_2                           8                            33
  CLUS_3                          13                            32
  CLUS_4                          14                            38
  CLUS_5                           7                            29
  CLUS_6                           2                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       14     22     16
  AMP PEAK 13(9P24.1) WILD-TYPE     63     79     49
D13V3, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          14                            63
  CLUS_2                          22                            79
  CLUS_3                          16                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED        8     33     11
  AMP PEAK 13(9P24.1) WILD-TYPE     48    121     22
D13V4, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            48
  CLUS_2                          33                           121
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       18     18     27
  AMP PEAK 13(9P24.1) WILD-TYPE     81     59     92
D13V5, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          18                            81
  CLUS_2                          18                            59
  CLUS_3                          27                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(9P24.1) MUTATED        8     18     20      3     14
  AMP PEAK 13(9P24.1) WILD-TYPE     52     77     52     22     29
D13V6, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                          18                            77
  CLUS_3                          20                            52
  CLUS_4                           3                            22
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(9P24.1) MUTATED       21     15     23
  AMP PEAK 13(9P24.1) WILD-TYPE    104     62     57
D13V7, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                          21                           104
  CLUS_2                          15                            62
  CLUS_3                          23                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(9P24.1) MUTATED        8     11      4     36
  AMP PEAK 13(9P24.1) WILD-TYPE     56     39     22    106
D13V8, multiclass
        clus
vv       AMP PEAK 13(9P24.1) MUTATED AMP PEAK 13(9P24.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          11                            39
  CLUS_3                           4                            22
  CLUS_4                          36                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        9      8      6
  AMP PEAK 14(11P12) WILD-TYPE    120     65     87
D14V1, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          9                          120
  CLUS_2                          8                           65
  CLUS_3                          6                           87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11P12) MUTATED        5      1      4      9      3      0
  AMP PEAK 14(11P12) WILD-TYPE     52     40     41     43     33     13
D14V2, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          5                           52
  CLUS_2                          1                           40
  CLUS_3                          4                           41
  CLUS_4                          9                           43
  CLUS_5                          3                           33
  CLUS_6                          0                           13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        5      7     10
  AMP PEAK 14(11P12) WILD-TYPE     72     94     55
D14V3, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          5                           72
  CLUS_2                          7                           94
  CLUS_3                         10                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        5     12      5
  AMP PEAK 14(11P12) WILD-TYPE     51    142     28
D14V4, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          5                           51
  CLUS_2                         12                          142
  CLUS_3                          5                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED        7      4     12
  AMP PEAK 14(11P12) WILD-TYPE     92     73    107
D14V5, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          7                           92
  CLUS_2                          4                           73
  CLUS_3                         12                          107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11P12) MUTATED        3      5      4      3      8
  AMP PEAK 14(11P12) WILD-TYPE     57     90     68     22     35
D14V6, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          3                           57
  CLUS_2                          5                           90
  CLUS_3                          4                           68
  CLUS_4                          3                           22
  CLUS_5                          8                           35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11P12) MUTATED       12      4      6
  AMP PEAK 14(11P12) WILD-TYPE    113     73     74
D14V7, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                         12                          113
  CLUS_2                          4                           73
  CLUS_3                          6                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11P12) MUTATED        3      5      2     12
  AMP PEAK 14(11P12) WILD-TYPE     61     45     24    130
D14V8, multiclass
        clus
vv       AMP PEAK 14(11P12) MUTATED AMP PEAK 14(11P12) WILD-TYPE
  CLUS_1                          3                           61
  CLUS_2                          5                           45
  CLUS_3                          2                           24
  CLUS_4                         12                          130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       11     21      9
  AMP PEAK 15(11Q13.3) WILD-TYPE    118     52     84
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           11                            118
  CLUS_2                           21                             52
  CLUS_3                            9                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q13.3) MUTATED        5      7      3     14      3      1
  AMP PEAK 15(11Q13.3) WILD-TYPE     52     34     42     38     33     12
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            5                             52
  CLUS_2                            7                             34
  CLUS_3                            3                             42
  CLUS_4                           14                             38
  CLUS_5                            3                             33
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED        7      8     18
  AMP PEAK 15(11Q13.3) WILD-TYPE     70     93     47
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            7                             70
  CLUS_2                            8                             93
  CLUS_3                           18                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED        6     15     12
  AMP PEAK 15(11Q13.3) WILD-TYPE     50    139     21
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                           15                            139
  CLUS_3                           12                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       10      6     25
  AMP PEAK 15(11Q13.3) WILD-TYPE     89     71     94
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           10                             89
  CLUS_2                            6                             71
  CLUS_3                           25                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.3) MUTATED        3     10      5      6     17
  AMP PEAK 15(11Q13.3) WILD-TYPE     57     85     67     19     26
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            3                             57
  CLUS_2                           10                             85
  CLUS_3                            5                             67
  CLUS_4                            6                             19
  CLUS_5                           17                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.3) MUTATED       20      7     12
  AMP PEAK 15(11Q13.3) WILD-TYPE    105     70     68
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           20                            105
  CLUS_2                            7                             70
  CLUS_3                           12                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.3) MUTATED        5      6      5     23
  AMP PEAK 15(11Q13.3) WILD-TYPE     59     44     21    119
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                            6                             44
  CLUS_3                            5                             21
  CLUS_4                           23                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED       15     23      9
  AMP PEAK 16(11Q22.1) WILD-TYPE    114     50     84
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           15                            114
  CLUS_2                           23                             50
  CLUS_3                            9                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q22.1) MUTATED        3      3      9     22      3      2
  AMP PEAK 16(11Q22.1) WILD-TYPE     54     38     36     30     33     11
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            3                             54
  CLUS_2                            3                             38
  CLUS_3                            9                             36
  CLUS_4                           22                             30
  CLUS_5                            3                             33
  CLUS_6                            2                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED        6     12     24
  AMP PEAK 16(11Q22.1) WILD-TYPE     71     89     41
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            6                             71
  CLUS_2                           12                             89
  CLUS_3                           24                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED        3     21     18
  AMP PEAK 16(11Q22.1) WILD-TYPE     53    133     15
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                           21                            133
  CLUS_3                           18                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED        8      8     31
  AMP PEAK 16(11Q22.1) WILD-TYPE     91     69     88
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            8                             91
  CLUS_2                            8                             69
  CLUS_3                           31                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q22.1) MUTATED        2      8     11      3     23
  AMP PEAK 16(11Q22.1) WILD-TYPE     58     87     61     22     20
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            2                             58
  CLUS_2                            8                             87
  CLUS_3                           11                             61
  CLUS_4                            3                             22
  CLUS_5                           23                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q22.1) MUTATED       18      8     19
  AMP PEAK 16(11Q22.1) WILD-TYPE    107     69     61
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                            8                             69
  CLUS_3                           19                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q22.1) MUTATED        3      5      7     30
  AMP PEAK 16(11Q22.1) WILD-TYPE     61     45     19    112
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q22.1) MUTATED AMP PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            5                             45
  CLUS_3                            7                             19
  CLUS_4                           30                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       23     21     21
  AMP PEAK 17(13Q22.1) WILD-TYPE    106     52     72
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           23                            106
  CLUS_2                           21                             52
  CLUS_3                           21                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(13Q22.1) MUTATED       13     15      7     17      4      0
  AMP PEAK 17(13Q22.1) WILD-TYPE     44     26     38     35     32     13
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           13                             44
  CLUS_2                           15                             26
  CLUS_3                            7                             38
  CLUS_4                           17                             35
  CLUS_5                            4                             32
  CLUS_6                            0                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       17     24     15
  AMP PEAK 17(13Q22.1) WILD-TYPE     60     77     50
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           17                             60
  CLUS_2                           24                             77
  CLUS_3                           15                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       12     37      7
  AMP PEAK 17(13Q22.1) WILD-TYPE     44    117     26
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           12                             44
  CLUS_2                           37                            117
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       24     15     26
  AMP PEAK 17(13Q22.1) WILD-TYPE     75     62     93
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           24                             75
  CLUS_2                           15                             62
  CLUS_3                           26                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(13Q22.1) MUTATED       13     22     14      9      7
  AMP PEAK 17(13Q22.1) WILD-TYPE     47     73     58     16     36
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                           22                             73
  CLUS_3                           14                             58
  CLUS_4                            9                             16
  CLUS_5                            7                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q22.1) MUTATED       31     17     13
  AMP PEAK 17(13Q22.1) WILD-TYPE     94     60     67
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           31                             94
  CLUS_2                           17                             60
  CLUS_3                           13                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q22.1) MUTATED       14     12      3     32
  AMP PEAK 17(13Q22.1) WILD-TYPE     50     38     23    110
D17V8, multiclass
        clus
vv       AMP PEAK 17(13Q22.1) MUTATED AMP PEAK 17(13Q22.1) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           12                             38
  CLUS_3                            3                             23
  CLUS_4                           32                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       23     25     21
  AMP PEAK 18(13Q34) WILD-TYPE    106     48     72
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         23                          106
  CLUS_2                         25                           48
  CLUS_3                         21                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(13Q34) MUTATED       14     14      8     17      6      2
  AMP PEAK 18(13Q34) WILD-TYPE     43     27     37     35     30     11
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         14                           43
  CLUS_2                         14                           27
  CLUS_3                          8                           37
  CLUS_4                         17                           35
  CLUS_5                          6                           30
  CLUS_6                          2                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       19     24     18
  AMP PEAK 18(13Q34) WILD-TYPE     58     77     47
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         19                           58
  CLUS_2                         24                           77
  CLUS_3                         18                           47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       13     41      7
  AMP PEAK 18(13Q34) WILD-TYPE     43    113     26
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         13                           43
  CLUS_2                         41                          113
  CLUS_3                          7                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       23     16     30
  AMP PEAK 18(13Q34) WILD-TYPE     76     61     89
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         23                           76
  CLUS_2                         16                           61
  CLUS_3                         30                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q34) MUTATED       12     24     16      8      9
  AMP PEAK 18(13Q34) WILD-TYPE     48     71     56     17     34
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         12                           48
  CLUS_2                         24                           71
  CLUS_3                         16                           56
  CLUS_4                          8                           17
  CLUS_5                          9                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       33     16     17
  AMP PEAK 18(13Q34) WILD-TYPE     92     61     63
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         33                           92
  CLUS_2                         16                           61
  CLUS_3                         17                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED       15     11      3     37
  AMP PEAK 18(13Q34) WILD-TYPE     49     39     23    105
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         15                           49
  CLUS_2                         11                           39
  CLUS_3                          3                           23
  CLUS_4                         37                          105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       28     26     22
  AMP PEAK 19(15Q26.1) WILD-TYPE    101     47     71
D19V1, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           28                            101
  CLUS_2                           26                             47
  CLUS_3                           22                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(15Q26.1) MUTATED       14      8     16     13      7      3
  AMP PEAK 19(15Q26.1) WILD-TYPE     43     33     29     39     29     10
D19V2, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           14                             43
  CLUS_2                            8                             33
  CLUS_3                           16                             29
  CLUS_4                           13                             39
  CLUS_5                            7                             29
  CLUS_6                            3                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       16     27     17
  AMP PEAK 19(15Q26.1) WILD-TYPE     61     74     48
D19V3, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           16                             61
  CLUS_2                           27                             74
  CLUS_3                           17                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       11     37     12
  AMP PEAK 19(15Q26.1) WILD-TYPE     45    117     21
D19V4, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           11                             45
  CLUS_2                           37                            117
  CLUS_3                           12                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       29     17     30
  AMP PEAK 19(15Q26.1) WILD-TYPE     70     60     89
D19V5, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           29                             70
  CLUS_2                           17                             60
  CLUS_3                           30                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(15Q26.1) MUTATED       16     23     15      8     14
  AMP PEAK 19(15Q26.1) WILD-TYPE     44     72     57     17     29
D19V6, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           23                             72
  CLUS_3                           15                             57
  CLUS_4                            8                             17
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.1) MUTATED       37     18     18
  AMP PEAK 19(15Q26.1) WILD-TYPE     88     59     62
D19V7, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           37                             88
  CLUS_2                           18                             59
  CLUS_3                           18                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.1) MUTATED       14     11     10     38
  AMP PEAK 19(15Q26.1) WILD-TYPE     50     39     16    104
D19V8, multiclass
        clus
vv       AMP PEAK 19(15Q26.1) MUTATED AMP PEAK 19(15Q26.1) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           11                             39
  CLUS_3                           10                             16
  CLUS_4                           38                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(16P13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       24     15     26
  AMP PEAK 20(16P13.13) WILD-TYPE    105     58     67
D20V1, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            24                             105
  CLUS_2                            15                              58
  CLUS_3                            26                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(16P13.13) MUTATED       18      6      6     10      8      2
  AMP PEAK 20(16P13.13) WILD-TYPE     39     35     39     42     28     11
D20V2, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            18                              39
  CLUS_2                             6                              35
  CLUS_3                             6                              39
  CLUS_4                            10                              42
  CLUS_5                             8                              28
  CLUS_6                             2                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       19     20     10
  AMP PEAK 20(16P13.13) WILD-TYPE     58     81     55
D20V3, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            19                              58
  CLUS_2                            20                              81
  CLUS_3                            10                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       17     28      4
  AMP PEAK 20(16P13.13) WILD-TYPE     39    126     29
D20V4, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            17                              39
  CLUS_2                            28                             126
  CLUS_3                             4                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       27     16     22
  AMP PEAK 20(16P13.13) WILD-TYPE     72     61     97
D20V5, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            27                              72
  CLUS_2                            16                              61
  CLUS_3                            22                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(16P13.13) MUTATED       15     18     14     10      8
  AMP PEAK 20(16P13.13) WILD-TYPE     45     77     58     15     35
D20V6, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            15                              45
  CLUS_2                            18                              77
  CLUS_3                            14                              58
  CLUS_4                            10                              15
  CLUS_5                             8                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(16P13.13) MUTATED       28     18     14
  AMP PEAK 20(16P13.13) WILD-TYPE     97     59     66
D20V7, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            28                              97
  CLUS_2                            18                              59
  CLUS_3                            14                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(16P13.13) MUTATED       18     11      5     26
  AMP PEAK 20(16P13.13) WILD-TYPE     46     39     21    116
D20V8, multiclass
        clus
vv       AMP PEAK 20(16P13.13) MUTATED AMP PEAK 20(16P13.13) WILD-TYPE
  CLUS_1                            18                              46
  CLUS_2                            11                              39
  CLUS_3                             5                              21
  CLUS_4                            26                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       15     22     18
  AMP PEAK 21(17Q12) WILD-TYPE    114     51     75
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         15                          114
  CLUS_2                         22                           51
  CLUS_3                         18                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(17Q12) MUTATED       17      8      6      3      8      3
  AMP PEAK 21(17Q12) WILD-TYPE     40     33     39     49     28     10
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         17                           40
  CLUS_2                          8                           33
  CLUS_3                          6                           39
  CLUS_4                          3                           49
  CLUS_5                          8                           28
  CLUS_6                          3                           10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       22     14      8
  AMP PEAK 21(17Q12) WILD-TYPE     55     87     57
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         22                           55
  CLUS_2                         14                           87
  CLUS_3                          8                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       18     23      3
  AMP PEAK 21(17Q12) WILD-TYPE     38    131     30
D21V4, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         18                           38
  CLUS_2                         23                          131
  CLUS_3                          3                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       25     16     14
  AMP PEAK 21(17Q12) WILD-TYPE     74     61    105
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         25                           74
  CLUS_2                         16                           61
  CLUS_3                         14                          105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(17Q12) MUTATED       20     17      9      3      6
  AMP PEAK 21(17Q12) WILD-TYPE     40     78     63     22     37
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         20                           40
  CLUS_2                         17                           78
  CLUS_3                          9                           63
  CLUS_4                          3                           22
  CLUS_5                          6                           37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q12) MUTATED       32     14      8
  AMP PEAK 21(17Q12) WILD-TYPE     93     63     72
D21V7, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         32                           93
  CLUS_2                         14                           63
  CLUS_3                          8                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q12) MUTATED       20      9      5     20
  AMP PEAK 21(17Q12) WILD-TYPE     44     41     21    122
D21V8, multiclass
        clus
vv       AMP PEAK 21(17Q12) MUTATED AMP PEAK 21(17Q12) WILD-TYPE
  CLUS_1                         20                           44
  CLUS_2                          9                           41
  CLUS_3                          5                           21
  CLUS_4                         20                          122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       19     26     29
  AMP PEAK 22(17Q25.1) WILD-TYPE    110     47     64
D22V1, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           19                            110
  CLUS_2                           26                             47
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(17Q25.1) MUTATED       16     11      9      9     12      6
  AMP PEAK 22(17Q25.1) WILD-TYPE     41     30     36     43     24      7
D22V2, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           16                             41
  CLUS_2                           11                             30
  CLUS_3                            9                             36
  CLUS_4                            9                             43
  CLUS_5                           12                             24
  CLUS_6                            6                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       23     26     13
  AMP PEAK 22(17Q25.1) WILD-TYPE     54     75     52
D22V3, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           23                             54
  CLUS_2                           26                             75
  CLUS_3                           13                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       17     41      4
  AMP PEAK 22(17Q25.1) WILD-TYPE     39    113     29
D22V4, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           17                             39
  CLUS_2                           41                            113
  CLUS_3                            4                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       30     21     23
  AMP PEAK 22(17Q25.1) WILD-TYPE     69     56     96
D22V5, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           21                             56
  CLUS_3                           23                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(17Q25.1) MUTATED       16     26     17      6      9
  AMP PEAK 22(17Q25.1) WILD-TYPE     44     69     55     19     34
D22V6, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           26                             69
  CLUS_3                           17                             55
  CLUS_4                            6                             19
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(17Q25.1) MUTATED       35     22     15
  AMP PEAK 22(17Q25.1) WILD-TYPE     90     55     65
D22V7, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           35                             90
  CLUS_2                           22                             55
  CLUS_3                           15                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(17Q25.1) MUTATED       17     15      7     33
  AMP PEAK 22(17Q25.1) WILD-TYPE     47     35     19    109
D22V8, multiclass
        clus
vv       AMP PEAK 22(17Q25.1) MUTATED AMP PEAK 22(17Q25.1) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           15                             35
  CLUS_3                            7                             19
  CLUS_4                           33                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED       16      7     16
  AMP PEAK 23(19P13.3) WILD-TYPE    113     66     77
D23V1, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           16                            113
  CLUS_2                            7                             66
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(19P13.3) MUTATED        2      9      7      3      4      5
  AMP PEAK 23(19P13.3) WILD-TYPE     55     32     38     49     32      8
D23V2, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            2                             55
  CLUS_2                            9                             32
  CLUS_3                            7                             38
  CLUS_4                            3                             49
  CLUS_5                            4                             32
  CLUS_6                            5                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED        8     16      6
  AMP PEAK 23(19P13.3) WILD-TYPE     69     85     59
D23V3, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            8                             69
  CLUS_2                           16                             85
  CLUS_3                            6                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED        4     26      0
  AMP PEAK 23(19P13.3) WILD-TYPE     52    128     33
D23V4, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            4                             52
  CLUS_2                           26                            128
  CLUS_3                            0                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED       11     13     15
  AMP PEAK 23(19P13.3) WILD-TYPE     88     64    104
D23V5, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           11                             88
  CLUS_2                           13                             64
  CLUS_3                           15                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(19P13.3) MUTATED        5     12     18      1      3
  AMP PEAK 23(19P13.3) WILD-TYPE     55     83     54     24     40
D23V6, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            5                             55
  CLUS_2                           12                             83
  CLUS_3                           18                             54
  CLUS_4                            1                             24
  CLUS_5                            3                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.3) MUTATED       16     13      8
  AMP PEAK 23(19P13.3) WILD-TYPE    109     64     72
D23V7, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                           16                            109
  CLUS_2                           13                             64
  CLUS_3                            8                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.3) MUTATED        5     11      4     17
  AMP PEAK 23(19P13.3) WILD-TYPE     59     39     22    125
D23V8, multiclass
        clus
vv       AMP PEAK 23(19P13.3) MUTATED AMP PEAK 23(19P13.3) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           11                             39
  CLUS_3                            4                             22
  CLUS_4                           17                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED       19      9     15
  AMP PEAK 24(19P13.2) WILD-TYPE    110     64     78
D24V1, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                           19                            110
  CLUS_2                            9                             64
  CLUS_3                           15                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(19P13.2) MUTATED        4      4      9     11      5      4
  AMP PEAK 24(19P13.2) WILD-TYPE     53     37     36     41     31      9
D24V2, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            4                             53
  CLUS_2                            4                             37
  CLUS_3                            9                             36
  CLUS_4                           11                             41
  CLUS_5                            5                             31
  CLUS_6                            4                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED        9     17     11
  AMP PEAK 24(19P13.2) WILD-TYPE     68     84     54
D24V3, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            9                             68
  CLUS_2                           17                             84
  CLUS_3                           11                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED        6     27      4
  AMP PEAK 24(19P13.2) WILD-TYPE     50    127     29
D24V4, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                           27                            127
  CLUS_3                            4                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED       13     10     20
  AMP PEAK 24(19P13.2) WILD-TYPE     86     67     99
D24V5, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                           13                             86
  CLUS_2                           10                             67
  CLUS_3                           20                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(19P13.2) MUTATED        5     16     16      1      5
  AMP PEAK 24(19P13.2) WILD-TYPE     55     79     56     24     38
D24V6, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            5                             55
  CLUS_2                           16                             79
  CLUS_3                           16                             56
  CLUS_4                            1                             24
  CLUS_5                            5                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19P13.2) MUTATED       18     11     10
  AMP PEAK 24(19P13.2) WILD-TYPE    107     66     70
D24V7, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                           11                             66
  CLUS_3                           10                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19P13.2) MUTATED        5     10      4     20
  AMP PEAK 24(19P13.2) WILD-TYPE     59     40     22    122
D24V8, multiclass
        clus
vv       AMP PEAK 24(19P13.2) MUTATED AMP PEAK 24(19P13.2) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           10                             40
  CLUS_3                            4                             22
  CLUS_4                           20                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19Q13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       21     46     26
  AMP PEAK 25(19Q13.13) WILD-TYPE    108     27     67
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            21                             108
  CLUS_2                            46                              27
  CLUS_3                            26                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19Q13.13) MUTATED       15      9     12     22      9      6
  AMP PEAK 25(19Q13.13) WILD-TYPE     42     32     33     30     27      7
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            15                              42
  CLUS_2                             9                              32
  CLUS_3                            12                              33
  CLUS_4                            22                              30
  CLUS_5                             9                              27
  CLUS_6                             6                               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       22     28     23
  AMP PEAK 25(19Q13.13) WILD-TYPE     55     73     42
D25V3, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            22                              55
  CLUS_2                            28                              73
  CLUS_3                            23                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       16     44     13
  AMP PEAK 25(19Q13.13) WILD-TYPE     40    110     20
D25V4, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            16                              40
  CLUS_2                            44                             110
  CLUS_3                            13                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       33     21     39
  AMP PEAK 25(19Q13.13) WILD-TYPE     66     56     80
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            33                              66
  CLUS_2                            21                              56
  CLUS_3                            39                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19Q13.13) MUTATED       14     32     22     12     13
  AMP PEAK 25(19Q13.13) WILD-TYPE     46     63     50     13     30
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            14                              46
  CLUS_2                            32                              63
  CLUS_3                            22                              50
  CLUS_4                            12                              13
  CLUS_5                            13                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19Q13.13) MUTATED       40     22     25
  AMP PEAK 25(19Q13.13) WILD-TYPE     85     55     55
D25V7, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            40                              85
  CLUS_2                            22                              55
  CLUS_3                            25                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19Q13.13) MUTATED       17     16      9     45
  AMP PEAK 25(19Q13.13) WILD-TYPE     47     34     17     97
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q13.13) MUTATED AMP PEAK 25(19Q13.13) WILD-TYPE
  CLUS_1                            17                              47
  CLUS_2                            16                              34
  CLUS_3                             9                              17
  CLUS_4                            45                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       43     44     48
  AMP PEAK 26(20Q11.21) WILD-TYPE     86     29     45
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            43                              86
  CLUS_2                            44                              29
  CLUS_3                            48                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20Q11.21) MUTATED       32     20     13     19     18      6
  AMP PEAK 26(20Q11.21) WILD-TYPE     25     21     32     33     18      7
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            32                              25
  CLUS_2                            20                              21
  CLUS_3                            13                              32
  CLUS_4                            19                              33
  CLUS_5                            18                              18
  CLUS_6                             6                               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       40     43     25
  AMP PEAK 26(20Q11.21) WILD-TYPE     37     58     40
D26V3, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            40                              37
  CLUS_2                            43                              58
  CLUS_3                            25                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       33     63     12
  AMP PEAK 26(20Q11.21) WILD-TYPE     23     91     21
D26V4, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            33                              23
  CLUS_2                            63                              91
  CLUS_3                            12                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       51     37     47
  AMP PEAK 26(20Q11.21) WILD-TYPE     48     40     72
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            51                              48
  CLUS_2                            37                              40
  CLUS_3                            47                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q11.21) MUTATED       35     37     31     16     16
  AMP PEAK 26(20Q11.21) WILD-TYPE     25     58     41      9     27
D26V6, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            35                              25
  CLUS_2                            37                              58
  CLUS_3                            31                              41
  CLUS_4                            16                               9
  CLUS_5                            16                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q11.21) MUTATED       61     35     34
  AMP PEAK 26(20Q11.21) WILD-TYPE     64     42     46
D26V7, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            61                              64
  CLUS_2                            35                              42
  CLUS_3                            34                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q11.21) MUTATED       36     21     14     59
  AMP PEAK 26(20Q11.21) WILD-TYPE     28     29     12     83
D26V8, multiclass
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  CLUS_1                            36                              28
  CLUS_2                            21                              29
  CLUS_3                            14                              12
  CLUS_4                            59                              83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(21Q22.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       21     16     11
  AMP PEAK 27(21Q22.13) WILD-TYPE    108     57     82
D27V1, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            21                             108
  CLUS_2                            16                              57
  CLUS_3                            11                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(21Q22.13) MUTATED        8      6      9      8      6      2
  AMP PEAK 27(21Q22.13) WILD-TYPE     49     35     36     44     30     11
D27V2, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             8                              49
  CLUS_2                             6                              35
  CLUS_3                             9                              36
  CLUS_4                             8                              44
  CLUS_5                             6                              30
  CLUS_6                             2                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       12     19      8
  AMP PEAK 27(21Q22.13) WILD-TYPE     65     82     57
D27V3, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            12                              65
  CLUS_2                            19                              82
  CLUS_3                             8                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED        9     26      4
  AMP PEAK 27(21Q22.13) WILD-TYPE     47    128     29
D27V4, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             9                              47
  CLUS_2                            26                             128
  CLUS_3                             4                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       17     11     20
  AMP PEAK 27(21Q22.13) WILD-TYPE     82     66     99
D27V5, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            17                              82
  CLUS_2                            11                              66
  CLUS_3                            20                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(21Q22.13) MUTATED        8     15     13      3      9
  AMP PEAK 27(21Q22.13) WILD-TYPE     52     80     59     22     34
D27V6, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             8                              52
  CLUS_2                            15                              80
  CLUS_3                            13                              59
  CLUS_4                             3                              22
  CLUS_5                             9                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(21Q22.13) MUTATED       19     12     15
  AMP PEAK 27(21Q22.13) WILD-TYPE    106     65     65
D27V7, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                            19                             106
  CLUS_2                            12                              65
  CLUS_3                            15                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(21Q22.13) MUTATED        7      9      6     24
  AMP PEAK 27(21Q22.13) WILD-TYPE     57     41     20    118
D27V8, multiclass
        clus
vv       AMP PEAK 27(21Q22.13) MUTATED AMP PEAK 27(21Q22.13) WILD-TYPE
  CLUS_1                             7                              57
  CLUS_2                             9                              41
  CLUS_3                             6                              20
  CLUS_4                            24                             118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       30     18     27
  AMP PEAK 28(XQ28) WILD-TYPE     99     55     66
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        30                          99
  CLUS_2                        18                          55
  CLUS_3                        27                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(XQ28) MUTATED       12     10     11     17      6      6
  AMP PEAK 28(XQ28) WILD-TYPE     45     31     34     35     30      7
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        12                          45
  CLUS_2                        10                          31
  CLUS_3                        11                          34
  CLUS_4                        17                          35
  CLUS_5                         6                          30
  CLUS_6                         6                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       15     27     19
  AMP PEAK 28(XQ28) WILD-TYPE     62     74     46
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        15                          62
  CLUS_2                        27                          74
  CLUS_3                        19                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       12     43      6
  AMP PEAK 28(XQ28) WILD-TYPE     44    111     27
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        12                          44
  CLUS_2                        43                         111
  CLUS_3                         6                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       29      8     38
  AMP PEAK 28(XQ28) WILD-TYPE     70     69     81
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        29                          70
  CLUS_2                         8                          69
  CLUS_3                        38                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ28) MUTATED       13     29     12      9     12
  AMP PEAK 28(XQ28) WILD-TYPE     47     66     60     16     31
D28V6, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        13                          47
  CLUS_2                        29                          66
  CLUS_3                        12                          60
  CLUS_4                         9                          16
  CLUS_5                        12                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ28) MUTATED       33     11     26
  AMP PEAK 28(XQ28) WILD-TYPE     92     66     54
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        33                          92
  CLUS_2                        11                          66
  CLUS_3                        26                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(XQ28) MUTATED       15      6      6     43
  AMP PEAK 28(XQ28) WILD-TYPE     49     44     20     99
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        15                          49
  CLUS_2                         6                          44
  CLUS_3                         6                          20
  CLUS_4                        43                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       10     20     10
  DEL PEAK  1(1P36.23) WILD-TYPE    119     53     83
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                            119
  CLUS_2                           20                             53
  CLUS_3                           10                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED       14      3      2      9      3      1
  DEL PEAK  1(1P36.23) WILD-TYPE     43     38     43     43     33     12
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           14                             43
  CLUS_2                            3                             38
  CLUS_3                            2                             43
  CLUS_4                            9                             43
  CLUS_5                            3                             33
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       16      5     11
  DEL PEAK  1(1P36.23) WILD-TYPE     61     96     54
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                             61
  CLUS_2                            5                             96
  CLUS_3                           11                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       15      9      8
  DEL PEAK  1(1P36.23) WILD-TYPE     41    145     25
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           15                             41
  CLUS_2                            9                            145
  CLUS_3                            8                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17      6     17
  DEL PEAK  1(1P36.23) WILD-TYPE     82     71    102
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                             82
  CLUS_2                            6                             71
  CLUS_3                           17                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.23) MUTATED       16     11      1      5      7
  DEL PEAK  1(1P36.23) WILD-TYPE     44     84     71     20     36
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                             44
  CLUS_2                           11                             84
  CLUS_3                            1                             71
  CLUS_4                            5                             20
  CLUS_5                            7                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       23      9      7
  DEL PEAK  1(1P36.23) WILD-TYPE    102     68     73
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           23                            102
  CLUS_2                            9                             68
  CLUS_3                            7                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.23) MUTATED       16      3      2     18
  DEL PEAK  1(1P36.23) WILD-TYPE     48     47     24    124
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           16                             48
  CLUS_2                            3                             47
  CLUS_3                            2                             24
  CLUS_4                           18                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        9     13     12
  DEL PEAK  2(1P13.2) WILD-TYPE    120     60     81
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           9                           120
  CLUS_2                          13                            60
  CLUS_3                          12                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED        4      2      4     15      4      1
  DEL PEAK  2(1P13.2) WILD-TYPE     53     39     41     37     32     12
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            53
  CLUS_2                           2                            39
  CLUS_3                           4                            41
  CLUS_4                          15                            37
  CLUS_5                           4                            32
  CLUS_6                           1                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        5      8     17
  DEL PEAK  2(1P13.2) WILD-TYPE     72     93     48
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           5                            72
  CLUS_2                           8                            93
  CLUS_3                          17                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        4     20      6
  DEL PEAK  2(1P13.2) WILD-TYPE     52    134     27
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            52
  CLUS_2                          20                           134
  CLUS_3                           6                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6      6     22
  DEL PEAK  2(1P13.2) WILD-TYPE     93     71     97
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            93
  CLUS_2                           6                            71
  CLUS_3                          22                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.2) MUTATED        4     13      5      5      7
  DEL PEAK  2(1P13.2) WILD-TYPE     56     82     67     20     36
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            56
  CLUS_2                          13                            82
  CLUS_3                           5                            67
  CLUS_4                           5                            20
  CLUS_5                           7                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED       14      8     12
  DEL PEAK  2(1P13.2) WILD-TYPE    111     69     68
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          14                           111
  CLUS_2                           8                            69
  CLUS_3                          12                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED        3      5      1     25
  DEL PEAK  2(1P13.2) WILD-TYPE     61     45     25    117
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           5                            45
  CLUS_3                           1                            25
  CLUS_4                          25                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       28     19     18
  DEL PEAK  3(2Q22.1) WILD-TYPE    101     54     75
D31V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          19                            54
  CLUS_3                          18                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        9     10     10     13      8      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     48     31     35     39     28     11
D31V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            48
  CLUS_2                          10                            31
  CLUS_3                          10                            35
  CLUS_4                          13                            39
  CLUS_5                           8                            28
  CLUS_6                           2                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       12     22     18
  DEL PEAK  3(2Q22.1) WILD-TYPE     65     79     47
D31V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          12                            65
  CLUS_2                          22                            79
  CLUS_3                          18                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        7     34     11
  DEL PEAK  3(2Q22.1) WILD-TYPE     49    120     22
D31V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                            49
  CLUS_2                          34                           120
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       22     16     27
  DEL PEAK  3(2Q22.1) WILD-TYPE     77     61     92
D31V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                          16                            61
  CLUS_3                          27                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        8     27     13      7     10
  DEL PEAK  3(2Q22.1) WILD-TYPE     52     68     59     18     33
D31V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            52
  CLUS_2                          27                            68
  CLUS_3                          13                            59
  CLUS_4                           7                            18
  CLUS_5                          10                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       28     13     18
  DEL PEAK  3(2Q22.1) WILD-TYPE     97     64     62
D31V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          28                            97
  CLUS_2                          13                            64
  CLUS_3                          18                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        8     10      3     38
  DEL PEAK  3(2Q22.1) WILD-TYPE     56     40     23    104
D31V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          10                            40
  CLUS_3                           3                            23
  CLUS_4                          38                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       47     44     38
  DEL PEAK  4(2Q37.1) WILD-TYPE     82     29     55
D32V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          47                            82
  CLUS_2                          44                            29
  CLUS_3                          38                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.1) MUTATED       11     17     22     33     15      7
  DEL PEAK  4(2Q37.1) WILD-TYPE     46     24     23     19     21      6
D32V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          11                            46
  CLUS_2                          17                            24
  CLUS_3                          22                            23
  CLUS_4                          33                            19
  CLUS_5                          15                            21
  CLUS_6                           7                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       16     47     41
  DEL PEAK  4(2Q37.1) WILD-TYPE     61     54     24
D32V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          16                            61
  CLUS_2                          47                            54
  CLUS_3                          41                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       10     73     21
  DEL PEAK  4(2Q37.1) WILD-TYPE     46     81     12
D32V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          10                            46
  CLUS_2                          73                            81
  CLUS_3                          21                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       35     30     64
  DEL PEAK  4(2Q37.1) WILD-TYPE     64     47     55
D32V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          35                            64
  CLUS_2                          30                            47
  CLUS_3                          64                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.1) MUTATED       13     48     32     11     25
  DEL PEAK  4(2Q37.1) WILD-TYPE     47     47     40     14     18
D32V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          48                            47
  CLUS_3                          32                            40
  CLUS_4                          11                            14
  CLUS_5                          25                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       54     27     42
  DEL PEAK  4(2Q37.1) WILD-TYPE     71     50     38
D32V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          54                            71
  CLUS_2                          27                            50
  CLUS_3                          42                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.1) MUTATED       13     20      9     81
  DEL PEAK  4(2Q37.1) WILD-TYPE     51     30     17     61
D32V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                          20                            30
  CLUS_3                           9                            17
  CLUS_4                          81                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       40     47     47
  DEL PEAK  5(3P14.2) WILD-TYPE     89     26     46
D33V1, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          40                            89
  CLUS_2                          47                            26
  CLUS_3                          47                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P14.2) MUTATED       13     24     15     31     21      5
  DEL PEAK  5(3P14.2) WILD-TYPE     44     17     30     21     15      8
D33V2, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          13                            44
  CLUS_2                          24                            17
  CLUS_3                          15                            30
  CLUS_4                          31                            21
  CLUS_5                          21                            15
  CLUS_6                           5                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       23     52     34
  DEL PEAK  5(3P14.2) WILD-TYPE     54     49     31
D33V3, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          23                            54
  CLUS_2                          52                            49
  CLUS_3                          34                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       13     85     11
  DEL PEAK  5(3P14.2) WILD-TYPE     43     69     22
D33V4, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          13                            43
  CLUS_2                          85                            69
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       33     37     64
  DEL PEAK  5(3P14.2) WILD-TYPE     66     40     55
D33V5, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          33                            66
  CLUS_2                          37                            40
  CLUS_3                          64                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P14.2) MUTATED       13     54     34     13     20
  DEL PEAK  5(3P14.2) WILD-TYPE     47     41     38     12     23
D33V6, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          13                            47
  CLUS_2                          54                            41
  CLUS_3                          34                            38
  CLUS_4                          13                            12
  CLUS_5                          20                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P14.2) MUTATED       44     35     48
  DEL PEAK  5(3P14.2) WILD-TYPE     81     42     32
D33V7, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          44                            81
  CLUS_2                          35                            42
  CLUS_3                          48                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P14.2) MUTATED       14     30     14     69
  DEL PEAK  5(3P14.2) WILD-TYPE     50     20     12     73
D33V8, multiclass
        clus
vv       DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          30                            20
  CLUS_3                          14                            12
  CLUS_4                          69                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       21     48     34
  DEL PEAK  6(4Q21.3) WILD-TYPE    108     25     59
D34V1, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          21                           108
  CLUS_2                          48                            25
  CLUS_3                          34                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q21.3) MUTATED       16     11     17     25     11      2
  DEL PEAK  6(4Q21.3) WILD-TYPE     41     30     28     27     25     11
D34V2, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          16                            41
  CLUS_2                          11                            30
  CLUS_3                          17                            28
  CLUS_4                          25                            27
  CLUS_5                          11                            25
  CLUS_6                           2                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       20     32     30
  DEL PEAK  6(4Q21.3) WILD-TYPE     57     69     35
D34V3, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          20                            57
  CLUS_2                          32                            69
  CLUS_3                          30                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       13     47     22
  DEL PEAK  6(4Q21.3) WILD-TYPE     43    107     11
D34V4, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          13                            43
  CLUS_2                          47                           107
  CLUS_3                          22                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       30     29     44
  DEL PEAK  6(4Q21.3) WILD-TYPE     69     48     75
D34V5, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          30                            69
  CLUS_2                          29                            48
  CLUS_3                          44                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q21.3) MUTATED       16     34     24      8     21
  DEL PEAK  6(4Q21.3) WILD-TYPE     44     61     48     17     22
D34V6, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          16                            44
  CLUS_2                          34                            61
  CLUS_3                          24                            48
  CLUS_4                           8                            17
  CLUS_5                          21                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q21.3) MUTATED       45     29     24
  DEL PEAK  6(4Q21.3) WILD-TYPE     80     48     56
D34V7, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          45                            80
  CLUS_2                          29                            48
  CLUS_3                          24                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q21.3) MUTATED       17     21      8     52
  DEL PEAK  6(4Q21.3) WILD-TYPE     47     29     18     90
D34V8, multiclass
        clus
vv       DEL PEAK  6(4Q21.3) MUTATED DEL PEAK  6(4Q21.3) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          21                            29
  CLUS_3                           8                            18
  CLUS_4                          52                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       17     51     32
  DEL PEAK  7(4Q22.1) WILD-TYPE    112     22     61
D35V1, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          17                           112
  CLUS_2                          51                            22
  CLUS_3                          32                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q22.1) MUTATED       16     13     15     24     10      2
  DEL PEAK  7(4Q22.1) WILD-TYPE     41     28     30     28     26     11
D35V2, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          16                            41
  CLUS_2                          13                            28
  CLUS_3                          15                            30
  CLUS_4                          24                            28
  CLUS_5                          10                            26
  CLUS_6                           2                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       20     31     29
  DEL PEAK  7(4Q22.1) WILD-TYPE     57     70     36
D35V3, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          20                            57
  CLUS_2                          31                            70
  CLUS_3                          29                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       13     46     21
  DEL PEAK  7(4Q22.1) WILD-TYPE     43    108     12
D35V4, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          13                            43
  CLUS_2                          46                           108
  CLUS_3                          21                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       30     27     43
  DEL PEAK  7(4Q22.1) WILD-TYPE     69     50     76
D35V5, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          30                            69
  CLUS_2                          27                            50
  CLUS_3                          43                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q22.1) MUTATED       16     33     22      6     23
  DEL PEAK  7(4Q22.1) WILD-TYPE     44     62     50     19     20
D35V6, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          16                            44
  CLUS_2                          33                            62
  CLUS_3                          22                            50
  CLUS_4                           6                            19
  CLUS_5                          23                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q22.1) MUTATED       47     27     21
  DEL PEAK  7(4Q22.1) WILD-TYPE     78     50     59
D35V7, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          47                            78
  CLUS_2                          27                            50
  CLUS_3                          21                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q22.1) MUTATED       17     19      7     52
  DEL PEAK  7(4Q22.1) WILD-TYPE     47     31     19     90
D35V8, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          19                            31
  CLUS_3                           7                            19
  CLUS_4                          52                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       25     52     37
  DEL PEAK  8(4Q35.2) WILD-TYPE    104     21     56
D36V1, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          25                           104
  CLUS_2                          52                            21
  CLUS_3                          37                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q35.2) MUTATED       19     14     17     29     12      3
  DEL PEAK  8(4Q35.2) WILD-TYPE     38     27     28     23     24     10
D36V2, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          19                            38
  CLUS_2                          14                            27
  CLUS_3                          17                            28
  CLUS_4                          29                            23
  CLUS_5                          12                            24
  CLUS_6                           3                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       25     34     35
  DEL PEAK  8(4Q35.2) WILD-TYPE     52     67     30
D36V3, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          25                            52
  CLUS_2                          34                            67
  CLUS_3                          35                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       16     53     25
  DEL PEAK  8(4Q35.2) WILD-TYPE     40    101      8
D36V4, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          16                            40
  CLUS_2                          53                           101
  CLUS_3                          25                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       33     33     48
  DEL PEAK  8(4Q35.2) WILD-TYPE     66     44     71
D36V5, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          33                            66
  CLUS_2                          33                            44
  CLUS_3                          48                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q35.2) MUTATED       19     34     29      8     24
  DEL PEAK  8(4Q35.2) WILD-TYPE     41     61     43     17     19
D36V6, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          19                            41
  CLUS_2                          34                            61
  CLUS_3                          29                            43
  CLUS_4                           8                            17
  CLUS_5                          24                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       51     32     26
  DEL PEAK  8(4Q35.2) WILD-TYPE     74     45     54
D36V7, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          51                            74
  CLUS_2                          32                            45
  CLUS_3                          26                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.2) MUTATED       19     25      7     58
  DEL PEAK  8(4Q35.2) WILD-TYPE     45     25     19     84
D36V8, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          19                            45
  CLUS_2                          25                            25
  CLUS_3                           7                            19
  CLUS_4                          58                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       19     33     24
  DEL PEAK  9(5Q12.1) WILD-TYPE    110     40     69
D37V1, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                           110
  CLUS_2                          33                            40
  CLUS_3                          24                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q12.1) MUTATED       12      9     10     15     12      4
  DEL PEAK  9(5Q12.1) WILD-TYPE     45     32     35     37     24      9
D37V2, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          12                            45
  CLUS_2                           9                            32
  CLUS_3                          10                            35
  CLUS_4                          15                            37
  CLUS_5                          12                            24
  CLUS_6                           4                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       14     27     21
  DEL PEAK  9(5Q12.1) WILD-TYPE     63     74     44
D37V3, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          14                            63
  CLUS_2                          27                            74
  CLUS_3                          21                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       11     42      9
  DEL PEAK  9(5Q12.1) WILD-TYPE     45    112     24
D37V4, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          11                            45
  CLUS_2                          42                           112
  CLUS_3                           9                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       19     16     41
  DEL PEAK  9(5Q12.1) WILD-TYPE     80     61     78
D37V5, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          19                            80
  CLUS_2                          16                            61
  CLUS_3                          41                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q12.1) MUTATED       12     22     19     10     13
  DEL PEAK  9(5Q12.1) WILD-TYPE     48     73     53     15     30
D37V6, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          22                            73
  CLUS_3                          19                            53
  CLUS_4                          10                            15
  CLUS_5                          13                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q12.1) MUTATED       31     20     23
  DEL PEAK  9(5Q12.1) WILD-TYPE     94     57     57
D37V7, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          31                            94
  CLUS_2                          20                            57
  CLUS_3                          23                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q12.1) MUTATED       14     15     13     32
  DEL PEAK  9(5Q12.1) WILD-TYPE     50     35     13    110
D37V8, multiclass
        clus
vv       DEL PEAK  9(5Q12.1) MUTATED DEL PEAK  9(5Q12.1) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          15                            35
  CLUS_3                          13                            13
  CLUS_4                          32                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       19     30     22
  DEL PEAK 10(5Q35.2) WILD-TYPE    110     43     71
D38V1, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          19                           110
  CLUS_2                          30                            43
  CLUS_3                          22                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q35.2) MUTATED       13     11     11     14     10      3
  DEL PEAK 10(5Q35.2) WILD-TYPE     44     30     34     38     26     10
D38V2, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          13                            44
  CLUS_2                          11                            30
  CLUS_3                          11                            34
  CLUS_4                          14                            38
  CLUS_5                          10                            26
  CLUS_6                           3                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       15     26     20
  DEL PEAK 10(5Q35.2) WILD-TYPE     62     75     45
D38V3, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          15                            62
  CLUS_2                          26                            75
  CLUS_3                          20                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       12     41      8
  DEL PEAK 10(5Q35.2) WILD-TYPE     44    113     25
D38V4, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            44
  CLUS_2                          41                           113
  CLUS_3                           8                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       17     16     38
  DEL PEAK 10(5Q35.2) WILD-TYPE     82     61     81
D38V5, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          17                            82
  CLUS_2                          16                            61
  CLUS_3                          38                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q35.2) MUTATED       12     20     18      7     14
  DEL PEAK 10(5Q35.2) WILD-TYPE     48     75     54     18     29
D38V6, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                          20                            75
  CLUS_3                          18                            54
  CLUS_4                           7                            18
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q35.2) MUTATED       31     15     22
  DEL PEAK 10(5Q35.2) WILD-TYPE     94     62     58
D38V7, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          31                            94
  CLUS_2                          15                            62
  CLUS_3                          22                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q35.2) MUTATED       12     13     11     32
  DEL PEAK 10(5Q35.2) WILD-TYPE     52     37     15    110
D38V8, multiclass
        clus
vv       DEL PEAK 10(5Q35.2) MUTATED DEL PEAK 10(5Q35.2) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          13                            37
  CLUS_3                          11                            15
  CLUS_4                          32                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED       24     12     10
  DEL PEAK 11(6P24.2) WILD-TYPE    105     61     83
D39V1, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                          24                           105
  CLUS_2                          12                            61
  CLUS_3                          10                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P24.2) MUTATED        5     11      6      8      9      0
  DEL PEAK 11(6P24.2) WILD-TYPE     52     30     39     44     27     13
D39V2, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           5                            52
  CLUS_2                          11                            30
  CLUS_3                           6                            39
  CLUS_4                           8                            44
  CLUS_5                           9                            27
  CLUS_6                           0                            13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED        7     22     10
  DEL PEAK 11(6P24.2) WILD-TYPE     70     79     55
D39V3, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           7                            70
  CLUS_2                          22                            79
  CLUS_3                          10                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED        5     29      5
  DEL PEAK 11(6P24.2) WILD-TYPE     51    125     28
D39V4, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           5                            51
  CLUS_2                          29                           125
  CLUS_3                           5                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED       12     16     18
  DEL PEAK 11(6P24.2) WILD-TYPE     87     61    101
D39V5, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                          12                            87
  CLUS_2                          16                            61
  CLUS_3                          18                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P24.2) MUTATED        4     22     12      5      3
  DEL PEAK 11(6P24.2) WILD-TYPE     56     73     60     20     40
D39V6, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           4                            56
  CLUS_2                          22                            73
  CLUS_3                          12                            60
  CLUS_4                           5                            20
  CLUS_5                           3                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P24.2) MUTATED       14     14     16
  DEL PEAK 11(6P24.2) WILD-TYPE    111     63     64
D39V7, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                          14                           111
  CLUS_2                          14                            63
  CLUS_3                          16                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P24.2) MUTATED        5     11      2     26
  DEL PEAK 11(6P24.2) WILD-TYPE     59     39     24    116
D39V8, multiclass
        clus
vv       DEL PEAK 11(6P24.2) MUTATED DEL PEAK 11(6P24.2) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                          11                            39
  CLUS_3                           2                            24
  CLUS_4                          26                           116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       39     43     18
  DEL PEAK 12(6Q26) WILD-TYPE     90     30     75
D40V1, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        39                          90
  CLUS_2                        43                          30
  CLUS_3                        18                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q26) MUTATED       17     21     13     22      9      2
  DEL PEAK 12(6Q26) WILD-TYPE     40     20     32     30     27     11
D40V2, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        17                          40
  CLUS_2                        21                          20
  CLUS_3                        13                          32
  CLUS_4                        22                          30
  CLUS_5                         9                          27
  CLUS_6                         2                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       22     36     26
  DEL PEAK 12(6Q26) WILD-TYPE     55     65     39
D40V3, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        22                          55
  CLUS_2                        36                          65
  CLUS_3                        26                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       15     53     16
  DEL PEAK 12(6Q26) WILD-TYPE     41    101     17
D40V4, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        15                          41
  CLUS_2                        53                         101
  CLUS_3                        16                          17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       28     27     45
  DEL PEAK 12(6Q26) WILD-TYPE     71     50     74
D40V5, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        28                          71
  CLUS_2                        27                          50
  CLUS_3                        45                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q26) MUTATED       15     33     23     11     18
  DEL PEAK 12(6Q26) WILD-TYPE     45     62     49     14     25
D40V6, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        15                          45
  CLUS_2                        33                          62
  CLUS_3                        23                          49
  CLUS_4                        11                          14
  CLUS_5                        18                          25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q26) MUTATED       38     24     34
  DEL PEAK 12(6Q26) WILD-TYPE     87     53     46
D40V7, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        38                          87
  CLUS_2                        24                          53
  CLUS_3                        34                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q26) MUTATED       16     15     10     55
  DEL PEAK 12(6Q26) WILD-TYPE     48     35     16     87
D40V8, multiclass
        clus
vv       DEL PEAK 12(6Q26) MUTATED DEL PEAK 12(6Q26) WILD-TYPE
  CLUS_1                        16                          48
  CLUS_2                        15                          35
  CLUS_3                        10                          16
  CLUS_4                        55                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       14     23     23
  DEL PEAK 13(7Q34) WILD-TYPE    115     50     70
D41V1, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                         115
  CLUS_2                        23                          50
  CLUS_3                        23                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q34) MUTATED       12      7      9     17      5      2
  DEL PEAK 13(7Q34) WILD-TYPE     45     34     36     35     31     11
D41V2, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        12                          45
  CLUS_2                         7                          34
  CLUS_3                         9                          36
  CLUS_4                        17                          35
  CLUS_5                         5                          31
  CLUS_6                         2                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       15     19     17
  DEL PEAK 13(7Q34) WILD-TYPE     62     82     48
D41V3, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        15                          62
  CLUS_2                        19                          82
  CLUS_3                        17                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       13     31      7
  DEL PEAK 13(7Q34) WILD-TYPE     43    123     26
D41V4, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        13                          43
  CLUS_2                        31                         123
  CLUS_3                         7                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       21     13     26
  DEL PEAK 13(7Q34) WILD-TYPE     78     64     93
D41V5, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        21                          78
  CLUS_2                        13                          64
  CLUS_3                        26                          93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q34) MUTATED       14     16     15      3     12
  DEL PEAK 13(7Q34) WILD-TYPE     46     79     57     22     31
D41V6, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                          46
  CLUS_2                        16                          79
  CLUS_3                        15                          57
  CLUS_4                         3                          22
  CLUS_5                        12                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q34) MUTATED       26     13     17
  DEL PEAK 13(7Q34) WILD-TYPE     99     64     63
D41V7, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        26                          99
  CLUS_2                        13                          64
  CLUS_3                        17                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q34) MUTATED       14     12      6     24
  DEL PEAK 13(7Q34) WILD-TYPE     50     38     20    118
D41V8, multiclass
        clus
vv       DEL PEAK 13(7Q34) MUTATED DEL PEAK 13(7Q34) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                        12                          38
  CLUS_3                         6                          20
  CLUS_4                        24                         118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       28     42     34
  DEL PEAK 14(8P23.3) WILD-TYPE    101     31     59
D42V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          42                            31
  CLUS_3                          34                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       21     11     11     27     15      4
  DEL PEAK 14(8P23.3) WILD-TYPE     36     30     34     25     21      9
D42V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          21                            36
  CLUS_2                          11                            30
  CLUS_3                          11                            34
  CLUS_4                          27                            25
  CLUS_5                          15                            21
  CLUS_6                           4                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       27     26     36
  DEL PEAK 14(8P23.3) WILD-TYPE     50     75     29
D42V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          27                            50
  CLUS_2                          26                            75
  CLUS_3                          36                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       22     50     17
  DEL PEAK 14(8P23.3) WILD-TYPE     34    104     16
D42V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          22                            34
  CLUS_2                          50                           104
  CLUS_3                          17                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       38     19     47
  DEL PEAK 14(8P23.3) WILD-TYPE     61     58     72
D42V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          38                            61
  CLUS_2                          19                            58
  CLUS_3                          47                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       24     26     20     11     23
  DEL PEAK 14(8P23.3) WILD-TYPE     36     69     52     14     20
D42V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          24                            36
  CLUS_2                          26                            69
  CLUS_3                          20                            52
  CLUS_4                          11                            14
  CLUS_5                          23                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       48     19     35
  DEL PEAK 14(8P23.3) WILD-TYPE     77     58     45
D42V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          48                            77
  CLUS_2                          19                            58
  CLUS_3                          35                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       24     12     12     54
  DEL PEAK 14(8P23.3) WILD-TYPE     40     38     14     88
D42V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          24                            40
  CLUS_2                          12                            38
  CLUS_3                          12                            14
  CLUS_4                          54                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       28     39     30
  DEL PEAK 15(8P23.1) WILD-TYPE    101     34     63
D43V1, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          28                           101
  CLUS_2                          39                            34
  CLUS_3                          30                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.1) MUTATED       19     10      9     24     15      5
  DEL PEAK 15(8P23.1) WILD-TYPE     38     31     36     28     21      8
D43V2, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          19                            38
  CLUS_2                          10                            31
  CLUS_3                           9                            36
  CLUS_4                          24                            28
  CLUS_5                          15                            21
  CLUS_6                           5                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       26     24     32
  DEL PEAK 15(8P23.1) WILD-TYPE     51     77     33
D43V3, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          26                            51
  CLUS_2                          24                            77
  CLUS_3                          32                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       20     48     14
  DEL PEAK 15(8P23.1) WILD-TYPE     36    106     19
D43V4, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          20                            36
  CLUS_2                          48                           106
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       35     16     46
  DEL PEAK 15(8P23.1) WILD-TYPE     64     61     73
D43V5, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          35                            64
  CLUS_2                          16                            61
  CLUS_3                          46                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.1) MUTATED       22     26     17     10     22
  DEL PEAK 15(8P23.1) WILD-TYPE     38     69     55     15     21
D43V6, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          22                            38
  CLUS_2                          26                            69
  CLUS_3                          17                            55
  CLUS_4                          10                            15
  CLUS_5                          22                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.1) MUTATED       43     17     36
  DEL PEAK 15(8P23.1) WILD-TYPE     82     60     44
D43V7, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          43                            82
  CLUS_2                          17                            60
  CLUS_3                          36                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.1) MUTATED       22     10     12     52
  DEL PEAK 15(8P23.1) WILD-TYPE     42     40     14     90
D43V8, multiclass
        clus
vv       DEL PEAK 15(8P23.1) MUTATED DEL PEAK 15(8P23.1) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                          10                            40
  CLUS_3                          12                            14
  CLUS_4                          52                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       30     32     24
  DEL PEAK 16(10Q23.31) WILD-TYPE     99     41     69
D44V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            30                              99
  CLUS_2                            32                              41
  CLUS_3                            24                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED       18     10      9     18     12      2
  DEL PEAK 16(10Q23.31) WILD-TYPE     39     31     36     34     24     11
D44V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            18                              39
  CLUS_2                            10                              31
  CLUS_3                             9                              36
  CLUS_4                            18                              34
  CLUS_5                            12                              24
  CLUS_6                             2                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       23     27     19
  DEL PEAK 16(10Q23.31) WILD-TYPE     54     74     46
D44V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            23                              54
  CLUS_2                            27                              74
  CLUS_3                            19                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       18     39     12
  DEL PEAK 16(10Q23.31) WILD-TYPE     38    115     21
D44V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            18                              38
  CLUS_2                            39                             115
  CLUS_3                            12                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       28     22     36
  DEL PEAK 16(10Q23.31) WILD-TYPE     71     55     83
D44V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            28                              71
  CLUS_2                            22                              55
  CLUS_3                            36                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       20     25     16     11     14
  DEL PEAK 16(10Q23.31) WILD-TYPE     40     70     56     14     29
D44V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            20                              40
  CLUS_2                            25                              70
  CLUS_3                            16                              56
  CLUS_4                            11                              14
  CLUS_5                            14                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       37     21     25
  DEL PEAK 16(10Q23.31) WILD-TYPE     88     56     55
D44V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            37                              88
  CLUS_2                            21                              56
  CLUS_3                            25                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       23     14      8     38
  DEL PEAK 16(10Q23.31) WILD-TYPE     41     36     18    104
D44V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            23                              41
  CLUS_2                            14                              36
  CLUS_3                             8                              18
  CLUS_4                            38                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       30     34     38
  DEL PEAK 17(11P15.1) WILD-TYPE     99     39     55
D45V1, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           30                             99
  CLUS_2                           34                             39
  CLUS_3                           38                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.1) MUTATED       10     15     17     23     12      3
  DEL PEAK 17(11P15.1) WILD-TYPE     47     26     28     29     24     10
D45V2, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           10                             47
  CLUS_2                           15                             26
  CLUS_3                           17                             28
  CLUS_4                           23                             29
  CLUS_5                           12                             24
  CLUS_6                            3                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       19     36     25
  DEL PEAK 17(11P15.1) WILD-TYPE     58     65     40
D45V3, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           19                             58
  CLUS_2                           36                             65
  CLUS_3                           25                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       11     58     11
  DEL PEAK 17(11P15.1) WILD-TYPE     45     96     22
D45V4, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           11                             45
  CLUS_2                           58                             96
  CLUS_3                           11                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       28     29     45
  DEL PEAK 17(11P15.1) WILD-TYPE     71     48     74
D45V5, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           28                             71
  CLUS_2                           29                             48
  CLUS_3                           45                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(11P15.1) MUTATED       12     39     28      9     14
  DEL PEAK 17(11P15.1) WILD-TYPE     48     56     44     16     29
D45V6, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           12                             48
  CLUS_2                           39                             56
  CLUS_3                           28                             44
  CLUS_4                            9                             16
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       44     26     28
  DEL PEAK 17(11P15.1) WILD-TYPE     81     51     52
D45V7, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           44                             81
  CLUS_2                           26                             51
  CLUS_3                           28                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.1) MUTATED       15     17     11     55
  DEL PEAK 17(11P15.1) WILD-TYPE     49     33     15     87
D45V8, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           17                             33
  CLUS_3                           11                             15
  CLUS_4                           55                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       49     42     71
  DEL PEAK 18(11Q23.3) WILD-TYPE     80     31     22
D46V1, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           49                             80
  CLUS_2                           42                             31
  CLUS_3                           71                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q23.3) MUTATED       21     21     27     32     23      9
  DEL PEAK 18(11Q23.3) WILD-TYPE     36     20     18     20     13      4
D46V2, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           21                             36
  CLUS_2                           21                             20
  CLUS_3                           27                             18
  CLUS_4                           32                             20
  CLUS_5                           23                             13
  CLUS_6                            9                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       35     61     36
  DEL PEAK 18(11Q23.3) WILD-TYPE     42     40     29
D46V3, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           35                             42
  CLUS_2                           61                             40
  CLUS_3                           36                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       23     92     17
  DEL PEAK 18(11Q23.3) WILD-TYPE     33     62     16
D46V4, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           23                             33
  CLUS_2                           92                             62
  CLUS_3                           17                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       53     41     68
  DEL PEAK 18(11Q23.3) WILD-TYPE     46     36     51
D46V5, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           53                             46
  CLUS_2                           41                             36
  CLUS_3                           68                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11Q23.3) MUTATED       21     63     43     11     24
  DEL PEAK 18(11Q23.3) WILD-TYPE     39     32     29     14     19
D46V6, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           21                             39
  CLUS_2                           63                             32
  CLUS_3                           43                             29
  CLUS_4                           11                             14
  CLUS_5                           24                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q23.3) MUTATED       65     39     52
  DEL PEAK 18(11Q23.3) WILD-TYPE     60     38     28
D46V7, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           65                             60
  CLUS_2                           39                             38
  CLUS_3                           52                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q23.3) MUTATED       25     29     20     82
  DEL PEAK 18(11Q23.3) WILD-TYPE     39     21      6     60
D46V8, multiclass
        clus
vv       DEL PEAK 18(11Q23.3) MUTATED DEL PEAK 18(11Q23.3) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           29                             21
  CLUS_3                           20                              6
  CLUS_4                           82                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       45     45     70
  DEL PEAK 19(11Q25) WILD-TYPE     84     28     23
D47V1, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         45                           84
  CLUS_2                         45                           28
  CLUS_3                         70                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(11Q25) MUTATED       21     19     26     33     23      9
  DEL PEAK 19(11Q25) WILD-TYPE     36     22     19     19     13      4
D47V2, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         21                           36
  CLUS_2                         19                           22
  CLUS_3                         26                           19
  CLUS_4                         33                           19
  CLUS_5                         23                           13
  CLUS_6                          9                            4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       35     59     36
  DEL PEAK 19(11Q25) WILD-TYPE     42     42     29
D47V3, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         35                           42
  CLUS_2                         59                           42
  CLUS_3                         36                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       23     89     18
  DEL PEAK 19(11Q25) WILD-TYPE     33     65     15
D47V4, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         23                           33
  CLUS_2                         89                           65
  CLUS_3                         18                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       50     41     69
  DEL PEAK 19(11Q25) WILD-TYPE     49     36     50
D47V5, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         50                           49
  CLUS_2                         41                           36
  CLUS_3                         69                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q25) MUTATED       21     61     42     11     25
  DEL PEAK 19(11Q25) WILD-TYPE     39     34     30     14     18
D47V6, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         21                           39
  CLUS_2                         61                           34
  CLUS_3                         42                           30
  CLUS_4                         11                           14
  CLUS_5                         25                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q25) MUTATED       63     38     52
  DEL PEAK 19(11Q25) WILD-TYPE     62     39     28
D47V7, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         63                           62
  CLUS_2                         38                           39
  CLUS_3                         52                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q25) MUTATED       25     28     20     80
  DEL PEAK 19(11Q25) WILD-TYPE     39     22      6     62
D47V8, multiclass
        clus
vv       DEL PEAK 19(11Q25) MUTATED DEL PEAK 19(11Q25) WILD-TYPE
  CLUS_1                         25                           39
  CLUS_2                         28                           22
  CLUS_3                         20                            6
  CLUS_4                         80                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       31     35     32
  DEL PEAK 20(13Q12.11) WILD-TYPE     98     38     61
D48V1, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            31                              98
  CLUS_2                            35                              38
  CLUS_3                            32                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q12.11) MUTATED        9     17     18     25     11      4
  DEL PEAK 20(13Q12.11) WILD-TYPE     48     24     27     27     25      9
D48V2, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             9                              48
  CLUS_2                            17                              24
  CLUS_3                            18                              27
  CLUS_4                            25                              27
  CLUS_5                            11                              25
  CLUS_6                             4                               9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       14     36     34
  DEL PEAK 20(13Q12.11) WILD-TYPE     63     65     31
D48V3, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            14                              63
  CLUS_2                            36                              65
  CLUS_3                            34                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED        8     59     17
  DEL PEAK 20(13Q12.11) WILD-TYPE     48     95     16
D48V4, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             8                              48
  CLUS_2                            59                              95
  CLUS_3                            17                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       21     25     52
  DEL PEAK 20(13Q12.11) WILD-TYPE     78     52     67
D48V5, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            21                              78
  CLUS_2                            25                              52
  CLUS_3                            52                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(13Q12.11) MUTATED        9     33     25     11     20
  DEL PEAK 20(13Q12.11) WILD-TYPE     51     62     47     14     23
D48V6, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             9                              51
  CLUS_2                            33                              62
  CLUS_3                            25                              47
  CLUS_4                            11                              14
  CLUS_5                            20                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q12.11) MUTATED       36     24     32
  DEL PEAK 20(13Q12.11) WILD-TYPE     89     53     48
D48V7, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                            36                              89
  CLUS_2                            24                              53
  CLUS_3                            32                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q12.11) MUTATED        9     18     10     55
  DEL PEAK 20(13Q12.11) WILD-TYPE     55     32     16     87
D48V8, multiclass
        clus
vv       DEL PEAK 20(13Q12.11) MUTATED DEL PEAK 20(13Q12.11) WILD-TYPE
  CLUS_1                             9                              55
  CLUS_2                            18                              32
  CLUS_3                            10                              16
  CLUS_4                            55                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       39     39     40
  DEL PEAK 21(13Q14.2) WILD-TYPE     90     34     53
D49V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           39                             90
  CLUS_2                           39                             34
  CLUS_3                           40                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       11     20     23     26     15      4
  DEL PEAK 21(13Q14.2) WILD-TYPE     46     21     22     26     21      9
D49V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           11                             46
  CLUS_2                           20                             21
  CLUS_3                           23                             22
  CLUS_4                           26                             26
  CLUS_5                           15                             21
  CLUS_6                            4                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       19     44     35
  DEL PEAK 21(13Q14.2) WILD-TYPE     58     57     30
D49V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           19                             58
  CLUS_2                           44                             57
  CLUS_3                           35                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       10     72     16
  DEL PEAK 21(13Q14.2) WILD-TYPE     46     82     17
D49V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           10                             46
  CLUS_2                           72                             82
  CLUS_3                           16                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       30     29     59
  DEL PEAK 21(13Q14.2) WILD-TYPE     69     48     60
D49V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           29                             48
  CLUS_3                           59                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       11     43     27     13     24
  DEL PEAK 21(13Q14.2) WILD-TYPE     49     52     45     12     19
D49V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           11                             49
  CLUS_2                           43                             52
  CLUS_3                           27                             45
  CLUS_4                           13                             12
  CLUS_5                           24                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       46     26     40
  DEL PEAK 21(13Q14.2) WILD-TYPE     79     51     40
D49V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           46                             79
  CLUS_2                           26                             51
  CLUS_3                           40                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       14     19     10     69
  DEL PEAK 21(13Q14.2) WILD-TYPE     50     31     16     73
D49V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           14                             50
  CLUS_2                           19                             31
  CLUS_3                           10                             16
  CLUS_4                           69                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       17     25      8
  DEL PEAK 22(14Q32.31) WILD-TYPE    112     48     85
D50V1, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            17                             112
  CLUS_2                            25                              48
  CLUS_3                             8                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(14Q32.31) MUTATED       13      8      2     10      5      2
  DEL PEAK 22(14Q32.31) WILD-TYPE     44     33     43     42     31     11
D50V2, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            13                              44
  CLUS_2                             8                              33
  CLUS_3                             2                              43
  CLUS_4                            10                              42
  CLUS_5                             5                              31
  CLUS_6                             2                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       22      7     11
  DEL PEAK 22(14Q32.31) WILD-TYPE     55     94     54
D50V3, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            22                              55
  CLUS_2                             7                              94
  CLUS_3                            11                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       14     16     10
  DEL PEAK 22(14Q32.31) WILD-TYPE     42    138     23
D50V4, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            14                              42
  CLUS_2                            16                             138
  CLUS_3                            10                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       22     10     18
  DEL PEAK 22(14Q32.31) WILD-TYPE     77     67    101
D50V5, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            22                              77
  CLUS_2                            10                              67
  CLUS_3                            18                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(14Q32.31) MUTATED       13     19      4      4     10
  DEL PEAK 22(14Q32.31) WILD-TYPE     47     76     68     21     33
D50V6, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            13                              47
  CLUS_2                            19                              76
  CLUS_3                             4                              68
  CLUS_4                             4                              21
  CLUS_5                            10                              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(14Q32.31) MUTATED       28      8     13
  DEL PEAK 22(14Q32.31) WILD-TYPE     97     69     67
D50V7, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            28                              97
  CLUS_2                             8                              69
  CLUS_3                            13                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(14Q32.31) MUTATED       15      4      3     27
  DEL PEAK 22(14Q32.31) WILD-TYPE     49     46     23    115
D50V8, multiclass
        clus
vv       DEL PEAK 22(14Q32.31) MUTATED DEL PEAK 22(14Q32.31) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                             4                              46
  CLUS_3                             3                              23
  CLUS_4                            27                             115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       20     31     19
  DEL PEAK 23(15Q21.1) WILD-TYPE    109     42     74
D51V1, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           20                            109
  CLUS_2                           31                             42
  CLUS_3                           19                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(15Q21.1) MUTATED       17      6      7     16      5      2
  DEL PEAK 23(15Q21.1) WILD-TYPE     40     35     38     36     31     11
D51V2, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           17                             40
  CLUS_2                            6                             35
  CLUS_3                            7                             38
  CLUS_4                           16                             36
  CLUS_5                            5                             31
  CLUS_6                            2                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       18     15     20
  DEL PEAK 23(15Q21.1) WILD-TYPE     59     86     45
D51V3, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           18                             59
  CLUS_2                           15                             86
  CLUS_3                           20                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       17     27      9
  DEL PEAK 23(15Q21.1) WILD-TYPE     39    127     24
D51V4, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           17                             39
  CLUS_2                           27                            127
  CLUS_3                            9                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       27      9     34
  DEL PEAK 23(15Q21.1) WILD-TYPE     72     68     85
D51V5, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                            9                             68
  CLUS_3                           34                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(15Q21.1) MUTATED       20     21      9      6     14
  DEL PEAK 23(15Q21.1) WILD-TYPE     40     74     63     19     29
D51V6, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           21                             74
  CLUS_3                            9                             63
  CLUS_4                            6                             19
  CLUS_5                           14                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(15Q21.1) MUTATED       40     12     16
  DEL PEAK 23(15Q21.1) WILD-TYPE     85     65     64
D51V7, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           40                             85
  CLUS_2                           12                             65
  CLUS_3                           16                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(15Q21.1) MUTATED       23      7      5     33
  DEL PEAK 23(15Q21.1) WILD-TYPE     41     43     21    109
D51V8, multiclass
        clus
vv       DEL PEAK 23(15Q21.1) MUTATED DEL PEAK 23(15Q21.1) WILD-TYPE
  CLUS_1                           23                             41
  CLUS_2                            7                             43
  CLUS_3                            5                             21
  CLUS_4                           33                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       19     18     16
  DEL PEAK 24(16Q11.2) WILD-TYPE    110     55     77
D52V1, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           19                            110
  CLUS_2                           18                             55
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16Q11.2) MUTATED       16      8      1      9      9      2
  DEL PEAK 24(16Q11.2) WILD-TYPE     41     33     44     43     27     11
D52V2, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           16                             41
  CLUS_2                            8                             33
  CLUS_3                            1                             44
  CLUS_4                            9                             43
  CLUS_5                            9                             27
  CLUS_6                            2                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       22     13     10
  DEL PEAK 24(16Q11.2) WILD-TYPE     55     88     55
D52V3, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           22                             55
  CLUS_2                           13                             88
  CLUS_3                           10                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       16     23      6
  DEL PEAK 24(16Q11.2) WILD-TYPE     40    131     27
D52V4, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           16                             40
  CLUS_2                           23                            131
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       27     12     14
  DEL PEAK 24(16Q11.2) WILD-TYPE     72     65    105
D52V5, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                           12                             65
  CLUS_3                           14                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(16Q11.2) MUTATED       18     14      6      7      8
  DEL PEAK 24(16Q11.2) WILD-TYPE     42     81     66     18     35
D52V6, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           18                             42
  CLUS_2                           14                             81
  CLUS_3                            6                             66
  CLUS_4                            7                             18
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q11.2) MUTATED       29     11     12
  DEL PEAK 24(16Q11.2) WILD-TYPE     96     66     68
D52V7, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           29                             96
  CLUS_2                           11                             66
  CLUS_3                           12                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q11.2) MUTATED       20      5      6     21
  DEL PEAK 24(16Q11.2) WILD-TYPE     44     45     20    121
D52V8, multiclass
        clus
vv       DEL PEAK 24(16Q11.2) MUTATED DEL PEAK 24(16Q11.2) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                            5                             45
  CLUS_3                            6                             20
  CLUS_4                           21                            121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       17     22     16
  DEL PEAK 25(16Q23.1) WILD-TYPE    112     51     77
D53V1, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           17                            112
  CLUS_2                           22                             51
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(16Q23.1) MUTATED       19      7      1      9      8      2
  DEL PEAK 25(16Q23.1) WILD-TYPE     38     34     44     43     28     11
D53V2, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           19                             38
  CLUS_2                            7                             34
  CLUS_3                            1                             44
  CLUS_4                            9                             43
  CLUS_5                            8                             28
  CLUS_6                            2                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       24     11     11
  DEL PEAK 25(16Q23.1) WILD-TYPE     53     90     54
D53V3, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           24                             53
  CLUS_2                           11                             90
  CLUS_3                           11                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       17     20      9
  DEL PEAK 25(16Q23.1) WILD-TYPE     39    134     24
D53V4, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           17                             39
  CLUS_2                           20                            134
  CLUS_3                            9                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       27     12     16
  DEL PEAK 25(16Q23.1) WILD-TYPE     72     65    103
D53V5, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                           12                             65
  CLUS_3                           16                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(16Q23.1) MUTATED       20     16      4      7      8
  DEL PEAK 25(16Q23.1) WILD-TYPE     40     79     68     18     35
D53V6, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           20                             40
  CLUS_2                           16                             79
  CLUS_3                            4                             68
  CLUS_4                            7                             18
  CLUS_5                            8                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(16Q23.1) MUTATED       32     12     10
  DEL PEAK 25(16Q23.1) WILD-TYPE     93     65     70
D53V7, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           32                             93
  CLUS_2                           12                             65
  CLUS_3                           10                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(16Q23.1) MUTATED       22      4      4     24
  DEL PEAK 25(16Q23.1) WILD-TYPE     42     46     22    118
D53V8, multiclass
        clus
vv       DEL PEAK 25(16Q23.1) MUTATED DEL PEAK 25(16Q23.1) WILD-TYPE
  CLUS_1                           22                             42
  CLUS_2                            4                             46
  CLUS_3                            4                             22
  CLUS_4                           24                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       34     39     36
  DEL PEAK 26(17P12) WILD-TYPE     95     34     57
D54V1, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         34                           95
  CLUS_2                         39                           34
  CLUS_3                         36                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(17P12) MUTATED       15     15     15     22     13      6
  DEL PEAK 26(17P12) WILD-TYPE     42     26     30     30     23      7
D54V2, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         15                           42
  CLUS_2                         15                           26
  CLUS_3                         15                           30
  CLUS_4                         22                           30
  CLUS_5                         13                           23
  CLUS_6                          6                            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       22     36     27
  DEL PEAK 26(17P12) WILD-TYPE     55     65     38
D54V3, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         22                           55
  CLUS_2                         36                           65
  CLUS_3                         27                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       13     59     13
  DEL PEAK 26(17P12) WILD-TYPE     43     95     20
D54V4, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         13                           43
  CLUS_2                         59                           95
  CLUS_3                         13                           20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       30     29     50
  DEL PEAK 26(17P12) WILD-TYPE     69     48     69
D54V5, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         30                           69
  CLUS_2                         29                           48
  CLUS_3                         50                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(17P12) MUTATED       16     36     25     12     20
  DEL PEAK 26(17P12) WILD-TYPE     44     59     47     13     23
D54V6, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         16                           44
  CLUS_2                         36                           59
  CLUS_3                         25                           47
  CLUS_4                         12                           13
  CLUS_5                         20                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17P12) MUTATED       42     29     32
  DEL PEAK 26(17P12) WILD-TYPE     83     48     48
D54V7, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         42                           83
  CLUS_2                         29                           48
  CLUS_3                         32                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17P12) MUTATED       20     19      9     55
  DEL PEAK 26(17P12) WILD-TYPE     44     31     17     87
D54V8, multiclass
        clus
vv       DEL PEAK 26(17P12) MUTATED DEL PEAK 26(17P12) WILD-TYPE
  CLUS_1                         20                           44
  CLUS_2                         19                           31
  CLUS_3                          9                           17
  CLUS_4                         55                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED       18     13     20
  DEL PEAK 27(17Q25.3) WILD-TYPE    111     60     73
D55V1, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                           18                            111
  CLUS_2                           13                             60
  CLUS_3                           20                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(17Q25.3) MUTATED        3     14      6     13      5      1
  DEL PEAK 27(17Q25.3) WILD-TYPE     54     27     39     39     31     12
D55V2, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            3                             54
  CLUS_2                           14                             27
  CLUS_3                            6                             39
  CLUS_4                           13                             39
  CLUS_5                            5                             31
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED        3     18     20
  DEL PEAK 27(17Q25.3) WILD-TYPE     74     83     45
D55V3, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            3                             74
  CLUS_2                           18                             83
  CLUS_3                           20                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED        2     31      8
  DEL PEAK 27(17Q25.3) WILD-TYPE     54    123     25
D55V4, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                           31                            123
  CLUS_3                            8                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED        9     11     31
  DEL PEAK 27(17Q25.3) WILD-TYPE     90     66     88
D55V5, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            9                             90
  CLUS_2                           11                             66
  CLUS_3                           31                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(17Q25.3) MUTATED        1     23     12      6      9
  DEL PEAK 27(17Q25.3) WILD-TYPE     59     72     60     19     34
D55V6, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            1                             59
  CLUS_2                           23                             72
  CLUS_3                           12                             60
  CLUS_4                            6                             19
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(17Q25.3) MUTATED       18     12     17
  DEL PEAK 27(17Q25.3) WILD-TYPE    107     65     63
D55V7, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                           12                             65
  CLUS_3                           17                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(17Q25.3) MUTATED        3      8      3     33
  DEL PEAK 27(17Q25.3) WILD-TYPE     61     42     23    109
D55V8, multiclass
        clus
vv       DEL PEAK 27(17Q25.3) MUTATED DEL PEAK 27(17Q25.3) WILD-TYPE
  CLUS_1                            3                             61
  CLUS_2                            8                             42
  CLUS_3                            3                             23
  CLUS_4                           33                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       32     27     23
  DEL PEAK 28(18Q21.2) WILD-TYPE     97     46     70
D56V1, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           32                             97
  CLUS_2                           27                             46
  CLUS_3                           23                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(18Q21.2) MUTATED       25      7      8     23      2      2
  DEL PEAK 28(18Q21.2) WILD-TYPE     32     34     37     29     34     11
D56V2, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           25                             32
  CLUS_2                            7                             34
  CLUS_3                            8                             37
  CLUS_4                           23                             29
  CLUS_5                            2                             34
  CLUS_6                            2                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       29      8     30
  DEL PEAK 28(18Q21.2) WILD-TYPE     48     93     35
D56V3, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           29                             48
  CLUS_2                            8                             93
  CLUS_3                           30                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       26     27     14
  DEL PEAK 28(18Q21.2) WILD-TYPE     30    127     19
D56V4, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           26                             30
  CLUS_2                           27                            127
  CLUS_3                           14                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       31     12     39
  DEL PEAK 28(18Q21.2) WILD-TYPE     68     65     80
D56V5, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           31                             68
  CLUS_2                           12                             65
  CLUS_3                           39                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(18Q21.2) MUTATED       29     18     11      4     20
  DEL PEAK 28(18Q21.2) WILD-TYPE     31     77     61     21     23
D56V6, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           29                             31
  CLUS_2                           18                             77
  CLUS_3                           11                             61
  CLUS_4                            4                             21
  CLUS_5                           20                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(18Q21.2) MUTATED       45     15     22
  DEL PEAK 28(18Q21.2) WILD-TYPE     80     62     58
D56V7, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           45                             80
  CLUS_2                           15                             62
  CLUS_3                           22                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(18Q21.2) MUTATED       29      7      6     40
  DEL PEAK 28(18Q21.2) WILD-TYPE     35     43     20    102
D56V8, multiclass
        clus
vv       DEL PEAK 28(18Q21.2) MUTATED DEL PEAK 28(18Q21.2) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                            7                             43
  CLUS_3                            6                             20
  CLUS_4                           40                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       24     52     29
  DEL PEAK 29(19P13.3) WILD-TYPE    105     21     64
D57V1, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           24                            105
  CLUS_2                           52                             21
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19P13.3) MUTATED       18     10      5     34      9      4
  DEL PEAK 29(19P13.3) WILD-TYPE     39     31     40     18     27      9
D57V2, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           18                             39
  CLUS_2                           10                             31
  CLUS_3                            5                             40
  CLUS_4                           34                             18
  CLUS_5                            9                             27
  CLUS_6                            4                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       26     19     35
  DEL PEAK 29(19P13.3) WILD-TYPE     51     82     30
D57V3, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           26                             51
  CLUS_2                           19                             82
  CLUS_3                           35                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       16     40     24
  DEL PEAK 29(19P13.3) WILD-TYPE     40    114      9
D57V4, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           16                             40
  CLUS_2                           40                            114
  CLUS_3                           24                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       40     17     48
  DEL PEAK 29(19P13.3) WILD-TYPE     59     60     71
D57V5, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           40                             59
  CLUS_2                           17                             60
  CLUS_3                           48                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19P13.3) MUTATED       17     36     13     13     26
  DEL PEAK 29(19P13.3) WILD-TYPE     43     59     59     12     17
D57V6, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           17                             43
  CLUS_2                           36                             59
  CLUS_3                           13                             59
  CLUS_4                           13                             12
  CLUS_5                           26                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19P13.3) MUTATED       52     19     30
  DEL PEAK 29(19P13.3) WILD-TYPE     73     58     50
D57V7, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           52                             73
  CLUS_2                           19                             58
  CLUS_3                           30                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19P13.3) MUTATED       20     11      9     61
  DEL PEAK 29(19P13.3) WILD-TYPE     44     39     17     81
D57V8, multiclass
        clus
vv       DEL PEAK 29(19P13.3) MUTATED DEL PEAK 29(19P13.3) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                           11                             39
  CLUS_3                            9                             17
  CLUS_4                           61                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       14     10     14
  DEL PEAK 30(19Q13.33) WILD-TYPE    115     63     79
D58V1, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            14                             115
  CLUS_2                            10                              63
  CLUS_3                            14                              79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(19Q13.33) MUTATED       11      4      1      9      4      1
  DEL PEAK 30(19Q13.33) WILD-TYPE     46     37     44     43     32     12
D58V2, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            11                              46
  CLUS_2                             4                              37
  CLUS_3                             1                              44
  CLUS_4                             9                              43
  CLUS_5                             4                              32
  CLUS_6                             1                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       13      8      9
  DEL PEAK 30(19Q13.33) WILD-TYPE     64     93     56
D58V3, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            13                              64
  CLUS_2                             8                              93
  CLUS_3                             9                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       11     16      3
  DEL PEAK 30(19Q13.33) WILD-TYPE     45    138     30
D58V4, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            11                              45
  CLUS_2                            16                             138
  CLUS_3                             3                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       17      5     16
  DEL PEAK 30(19Q13.33) WILD-TYPE     82     72    103
D58V5, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            17                              82
  CLUS_2                             5                              72
  CLUS_3                            16                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(19Q13.33) MUTATED       10     16      4      2      6
  DEL PEAK 30(19Q13.33) WILD-TYPE     50     79     68     23     37
D58V6, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            10                              50
  CLUS_2                            16                              79
  CLUS_3                             4                              68
  CLUS_4                             2                              23
  CLUS_5                             6                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(19Q13.33) MUTATED       22      5     11
  DEL PEAK 30(19Q13.33) WILD-TYPE    103     72     69
D58V7, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            22                             103
  CLUS_2                             5                              72
  CLUS_3                            11                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(19Q13.33) MUTATED       13      3      4     18
  DEL PEAK 30(19Q13.33) WILD-TYPE     51     47     22    124
D58V8, multiclass
        clus
vv       DEL PEAK 30(19Q13.33) MUTATED DEL PEAK 30(19Q13.33) WILD-TYPE
  CLUS_1                            13                              51
  CLUS_2                             3                              47
  CLUS_3                             4                              22
  CLUS_4                            18                             124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED       16     11      9
  DEL PEAK 31(20P12.1) WILD-TYPE    113     62     84
D59V1, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                           16                            113
  CLUS_2                           11                             62
  CLUS_3                            9                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(20P12.1) MUTATED        7      3      2     14      5      1
  DEL PEAK 31(20P12.1) WILD-TYPE     50     38     43     38     31     12
D59V2, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            7                             50
  CLUS_2                            3                             38
  CLUS_3                            2                             43
  CLUS_4                           14                             38
  CLUS_5                            5                             31
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        9      9     14
  DEL PEAK 31(20P12.1) WILD-TYPE     68     92     51
D59V3, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            9                             68
  CLUS_2                            9                             92
  CLUS_3                           14                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        7     18      7
  DEL PEAK 31(20P12.1) WILD-TYPE     49    136     26
D59V4, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            7                             49
  CLUS_2                           18                            136
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED        8      7     21
  DEL PEAK 31(20P12.1) WILD-TYPE     91     70     98
D59V5, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            8                             91
  CLUS_2                            7                             70
  CLUS_3                           21                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(20P12.1) MUTATED        9      8      7      2     10
  DEL PEAK 31(20P12.1) WILD-TYPE     51     87     65     23     33
D59V6, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            9                             51
  CLUS_2                            8                             87
  CLUS_3                            7                             65
  CLUS_4                            2                             23
  CLUS_5                           10                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(20P12.1) MUTATED       13      6     15
  DEL PEAK 31(20P12.1) WILD-TYPE    112     71     65
D59V7, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                           13                            112
  CLUS_2                            6                             71
  CLUS_3                           15                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(20P12.1) MUTATED        8      3      5     18
  DEL PEAK 31(20P12.1) WILD-TYPE     56     47     21    124
D59V8, multiclass
        clus
vv       DEL PEAK 31(20P12.1) MUTATED DEL PEAK 31(20P12.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                            3                             47
  CLUS_3                            5                             21
  CLUS_4                           18                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       13     24     21
  DEL PEAK 32(21Q11.2) WILD-TYPE    116     49     72
D60V1, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           13                            116
  CLUS_2                           24                             49
  CLUS_3                           21                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(21Q11.2) MUTATED       11      4      7     17      5      3
  DEL PEAK 32(21Q11.2) WILD-TYPE     46     37     38     35     31     10
D60V2, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           11                             46
  CLUS_2                            4                             37
  CLUS_3                            7                             38
  CLUS_4                           17                             35
  CLUS_5                            5                             31
  CLUS_6                            3                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       14     15     18
  DEL PEAK 32(21Q11.2) WILD-TYPE     63     86     47
D60V3, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           14                             63
  CLUS_2                           15                             86
  CLUS_3                           18                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       11     22     14
  DEL PEAK 32(21Q11.2) WILD-TYPE     45    132     19
D60V4, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           11                             45
  CLUS_2                           22                            132
  CLUS_3                           14                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       19     12     27
  DEL PEAK 32(21Q11.2) WILD-TYPE     80     65     92
D60V5, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           19                             80
  CLUS_2                           12                             65
  CLUS_3                           27                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(21Q11.2) MUTATED        9     17     12      8     12
  DEL PEAK 32(21Q11.2) WILD-TYPE     51     78     60     17     31
D60V6, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                            9                             51
  CLUS_2                           17                             78
  CLUS_3                           12                             60
  CLUS_4                            8                             17
  CLUS_5                           12                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q11.2) MUTATED       27     17     12
  DEL PEAK 32(21Q11.2) WILD-TYPE     98     60     68
D60V7, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           27                             98
  CLUS_2                           17                             60
  CLUS_3                           12                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(21Q11.2) MUTATED       13     10      5     28
  DEL PEAK 32(21Q11.2) WILD-TYPE     51     40     21    114
D60V8, multiclass
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           10                             40
  CLUS_3                            5                             21
  CLUS_4                           28                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       28     32     28
  DEL PEAK 33(22Q13.32) WILD-TYPE    101     41     65
D61V1, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            28                             101
  CLUS_2                            32                              41
  CLUS_3                            28                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(22Q13.32) MUTATED       19     12      9     21      9      1
  DEL PEAK 33(22Q13.32) WILD-TYPE     38     29     36     31     27     12
D61V2, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            19                              38
  CLUS_2                            12                              29
  CLUS_3                             9                              36
  CLUS_4                            21                              31
  CLUS_5                             9                              27
  CLUS_6                             1                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       24     22     25
  DEL PEAK 33(22Q13.32) WILD-TYPE     53     79     40
D61V3, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            24                              53
  CLUS_2                            22                              79
  CLUS_3                            25                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       18     36     17
  DEL PEAK 33(22Q13.32) WILD-TYPE     38    118     16
D61V4, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            18                              38
  CLUS_2                            36                             118
  CLUS_3                            17                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       30     22     36
  DEL PEAK 33(22Q13.32) WILD-TYPE     69     55     83
D61V5, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            30                              69
  CLUS_2                            22                              55
  CLUS_3                            36                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(22Q13.32) MUTATED       21     25     19      9     14
  DEL PEAK 33(22Q13.32) WILD-TYPE     39     70     53     16     29
D61V6, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            21                              39
  CLUS_2                            25                              70
  CLUS_3                            19                              53
  CLUS_4                             9                              16
  CLUS_5                            14                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(22Q13.32) MUTATED       37     23     23
  DEL PEAK 33(22Q13.32) WILD-TYPE     88     54     57
D61V7, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            37                              88
  CLUS_2                            23                              54
  CLUS_3                            23                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(22Q13.32) MUTATED       20     15      6     42
  DEL PEAK 33(22Q13.32) WILD-TYPE     44     35     20    100
D61V8, multiclass
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  CLUS_1                            20                              44
  CLUS_2                            15                              35
  CLUS_3                             6                              20
  CLUS_4                            42                             100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       22     30     20
  DEL PEAK 34(XP11.3) WILD-TYPE    107     43     73
D62V1, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          22                           107
  CLUS_2                          30                            43
  CLUS_3                          20                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XP11.3) MUTATED        7     13      5     23      8      3
  DEL PEAK 34(XP11.3) WILD-TYPE     50     28     40     29     28     10
D62V2, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                           7                            50
  CLUS_2                          13                            28
  CLUS_3                           5                            40
  CLUS_4                          23                            29
  CLUS_5                           8                            28
  CLUS_6                           3                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       10     25     24
  DEL PEAK 34(XP11.3) WILD-TYPE     67     76     41
D62V3, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          10                            67
  CLUS_2                          25                            76
  CLUS_3                          24                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED        8     41     10
  DEL PEAK 34(XP11.3) WILD-TYPE     48    113     23
D62V4, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                           8                            48
  CLUS_2                          41                           113
  CLUS_3                          10                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       22      8     42
  DEL PEAK 34(XP11.3) WILD-TYPE     77     69     77
D62V5, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          22                            77
  CLUS_2                           8                            69
  CLUS_3                          42                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(XP11.3) MUTATED       11     28     10      9     14
  DEL PEAK 34(XP11.3) WILD-TYPE     49     67     62     16     29
D62V6, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          11                            49
  CLUS_2                          28                            67
  CLUS_3                          10                            62
  CLUS_4                           9                            16
  CLUS_5                          14                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XP11.3) MUTATED       29     10     29
  DEL PEAK 34(XP11.3) WILD-TYPE     96     67     51
D62V7, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          29                            96
  CLUS_2                          10                            67
  CLUS_3                          29                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XP11.3) MUTATED       13      7      7     41
  DEL PEAK 34(XP11.3) WILD-TYPE     51     43     19    101
D62V8, multiclass
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                           7                            43
  CLUS_3                           7                            19
  CLUS_4                          41                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       23     21     16
  DEL PEAK 35(XQ21.33) WILD-TYPE    106     52     77
D63V1, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           23                            106
  CLUS_2                           21                             52
  CLUS_3                           16                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(XQ21.33) MUTATED        6     16      4     12      8      3
  DEL PEAK 35(XQ21.33) WILD-TYPE     51     25     41     40     28     10
D63V2, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                            6                             51
  CLUS_2                           16                             25
  CLUS_3                            4                             41
  CLUS_4                           12                             40
  CLUS_5                            8                             28
  CLUS_6                            3                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       11     22     16
  DEL PEAK 35(XQ21.33) WILD-TYPE     66     79     49
D63V3, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           11                             66
  CLUS_2                           22                             79
  CLUS_3                           16                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED        6     37      6
  DEL PEAK 35(XQ21.33) WILD-TYPE     50    117     27
D63V4, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                           37                            117
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       17     13     30
  DEL PEAK 35(XQ21.33) WILD-TYPE     82     64     89
D63V5, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           17                             82
  CLUS_2                           13                             64
  CLUS_3                           30                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(XQ21.33) MUTATED       13     21     13      4      9
  DEL PEAK 35(XQ21.33) WILD-TYPE     47     74     59     21     34
D63V6, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                           21                             74
  CLUS_3                           13                             59
  CLUS_4                            4                             21
  CLUS_5                            9                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(XQ21.33) MUTATED       25     11     23
  DEL PEAK 35(XQ21.33) WILD-TYPE    100     66     57
D63V7, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           25                            100
  CLUS_2                           11                             66
  CLUS_3                           23                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(XQ21.33) MUTATED       13      8      7     31
  DEL PEAK 35(XQ21.33) WILD-TYPE     51     42     19    111
D63V8, multiclass
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                            8                             42
  CLUS_3                            7                             19
  CLUS_4                           31                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
