[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
                                                 Clinical feature                                  
Time to Death                                    "Time to Death"                                   
AGE                                              "AGE"                                             
PATHOLOGY.T.STAGE                                "PATHOLOGY T STAGE"                               
PATHOLOGY.N.STAGE                                "PATHOLOGY N STAGE"                               
PATHOLOGY.M.STAGE                                "PATHOLOGY M STAGE"                               
HISTOLOGICAL.TYPE                                "HISTOLOGICAL TYPE"                               
RADIATIONS.RADIATION.REGIMENINDICATION           "RADIATIONS RADIATION REGIMENINDICATION"          
NUMBERPACKYEARSSMOKED                            "NUMBERPACKYEARSSMOKED"                           
NUMBER.OF.LYMPH.NODES                            "NUMBER OF LYMPH NODES"                           
RACE                                             "RACE"                                            
ETHNICITY                                        "ETHNICITY"                                       
WEIGHT_KG_AT_DIAGNOSIS                           "WEIGHT_KG_AT_DIAGNOSIS"                          
TUMOR_STATUS                                     "TUMOR_STATUS"                                    
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 "TUMOR_SAMPLE_PROCUREMENT_COUNTRY"                
NEOPLASMHISTOLOGICGRADE                          "NEOPLASMHISTOLOGICGRADE"                         
TOBACCO_SMOKING_YEAR_STOPPED                     "TOBACCO_SMOKING_YEAR_STOPPED"                    
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "TOBACCO_SMOKING_PACK_YEARS_SMOKED"               
TOBACCO_SMOKING_HISTORY                          "TOBACCO_SMOKING_HISTORY"                         
PATIENT.AGEBEGANSMOKINGINYEARS                   "PATIENT AGEBEGANSMOKINGINYEARS"                  
RADIATION_TOTAL_DOSE                             "RADIATION_TOTAL_DOSE"                            
RADIATION_THERAPY_TYPE                           "RADIATION_THERAPY_TYPE"                          
RADIATION_THERAPY_STATUS                         "RADIATION_THERAPY_STATUS"                        
RADIATION_THERAPY_SITE                           "RADIATION_THERAPY_SITE"                          
RADIATION_ADJUVANT_UNITS                         "RADIATION_ADJUVANT_UNITS"                        
PREGNANCIES_COUNT_TOTAL                          "PREGNANCIES_COUNT_TOTAL"                         
PREGNANCIES_COUNT_STILLBIRTH                     "PREGNANCIES_COUNT_STILLBIRTH"                    
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "PATIENT PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT"
PREGNANCIES_COUNT_LIVE_BIRTH                     "PREGNANCIES_COUNT_LIVE_BIRTH"                    
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "PATIENT PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT"
PREGNANCIES_COUNT_ECTOPIC                        "PREGNANCIES_COUNT_ECTOPIC"                       
POS_LYMPH_NODE_LOCATION                          "POS_LYMPH_NODE_LOCATION"                         
MENOPAUSE_STATUS                                 "MENOPAUSE_STATUS"                                
LYMPHOVASCULAR_INVOLVEMENT                       "LYMPHOVASCULAR_INVOLVEMENT"                      
LYMPH_NODES_EXAMINED_HE_COUNT                    "LYMPH_NODES_EXAMINED_HE_COUNT"                   
LYMPH_NODES_EXAMINED                             "LYMPH_NODES_EXAMINED"                            
KERATINIZATION_SQUAMOUS_CELL                     "KERATINIZATION_SQUAMOUS_CELL"                    
INITIAL_PATHOLOGIC_DX_YEAR                       "INITIAL_PATHOLOGIC_DX_YEAR"                      
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "HISTORY_HORMONAL_CONTRACEPTIVES_USE"             
HEIGHT_CM_AT_DIAGNOSIS                           "HEIGHT_CM_AT_DIAGNOSIS"                          
CORPUS_INVOLVEMENT                               "CORPUS_INVOLVEMENT"                              
CHEMO_CONCURRENT_TYPE                            "CHEMO_CONCURRENT_TYPE"                           
CERVIX_SUV_RESULTS                               "CERVIX_SUV_RESULTS"                              
AJCC_TUMOR_PATHOLOGIC_PT                         "AJCC_TUMOR_PATHOLOGIC_PT"                        
AGE_AT_DIAGNOSIS                                 "AGE_AT_DIAGNOSIS"                                
STAGE_EVENT.CLINICAL_STAGE                       "STAGE_EVENT CLINICAL_STAGE"                      
                                                 Statistical test           
Time to Death                                    "Cox regression test"      
AGE                                              "Spearman correlation test"
PATHOLOGY.T.STAGE                                "Spearman correlation test"
PATHOLOGY.N.STAGE                                "Wilcoxon test"            
PATHOLOGY.M.STAGE                                "Kruskal-Wallis test"      
HISTOLOGICAL.TYPE                                "Kruskal-Wallis test"      
RADIATIONS.RADIATION.REGIMENINDICATION           "Wilcoxon test"            
NUMBERPACKYEARSSMOKED                            "Spearman correlation test"
NUMBER.OF.LYMPH.NODES                            "Spearman correlation test"
RACE                                             "Kruskal-Wallis test"      
ETHNICITY                                        "Wilcoxon test"            
WEIGHT_KG_AT_DIAGNOSIS                           "Spearman correlation test"
TUMOR_STATUS                                     "Wilcoxon test"            
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 "Kruskal-Wallis test"      
NEOPLASMHISTOLOGICGRADE                          "Kruskal-Wallis test"      
TOBACCO_SMOKING_YEAR_STOPPED                     "Spearman correlation test"
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "Spearman correlation test"
TOBACCO_SMOKING_HISTORY                          "Kruskal-Wallis test"      
PATIENT.AGEBEGANSMOKINGINYEARS                   "Spearman correlation test"
RADIATION_TOTAL_DOSE                             "Spearman correlation test"
RADIATION_THERAPY_TYPE                           "Kruskal-Wallis test"      
RADIATION_THERAPY_STATUS                         "Wilcoxon test"            
RADIATION_THERAPY_SITE                           "Kruskal-Wallis test"      
RADIATION_ADJUVANT_UNITS                         "Wilcoxon test"            
PREGNANCIES_COUNT_TOTAL                          "Spearman correlation test"
PREGNANCIES_COUNT_STILLBIRTH                     "Spearman correlation test"
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "Spearman correlation test"
PREGNANCIES_COUNT_LIVE_BIRTH                     "Spearman correlation test"
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "Spearman correlation test"
PREGNANCIES_COUNT_ECTOPIC                        "Spearman correlation test"
POS_LYMPH_NODE_LOCATION                          "Kruskal-Wallis test"      
MENOPAUSE_STATUS                                 "Kruskal-Wallis test"      
LYMPHOVASCULAR_INVOLVEMENT                       "Wilcoxon test"            
LYMPH_NODES_EXAMINED_HE_COUNT                    "Spearman correlation test"
LYMPH_NODES_EXAMINED                             "Spearman correlation test"
KERATINIZATION_SQUAMOUS_CELL                     "Wilcoxon test"            
INITIAL_PATHOLOGIC_DX_YEAR                       "Spearman correlation test"
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "Kruskal-Wallis test"      
HEIGHT_CM_AT_DIAGNOSIS                           "Spearman correlation test"
CORPUS_INVOLVEMENT                               "Wilcoxon test"            
CHEMO_CONCURRENT_TYPE                            "Kruskal-Wallis test"      
CERVIX_SUV_RESULTS                               "Spearman correlation test"
AJCC_TUMOR_PATHOLOGIC_PT                         "Kruskal-Wallis test"      
AGE_AT_DIAGNOSIS                                 "Spearman correlation test"
STAGE_EVENT.CLINICAL_STAGE                       "Kruskal-Wallis test"      
                                                 Significant genes
Time to Death                                    "N=0"            
AGE                                              "N=33"           
PATHOLOGY.T.STAGE                                "N=0"            
PATHOLOGY.N.STAGE                                "N=0"            
PATHOLOGY.M.STAGE                                "N=0"            
HISTOLOGICAL.TYPE                                "N=2188"         
RADIATIONS.RADIATION.REGIMENINDICATION           "N=276"          
NUMBERPACKYEARSSMOKED                            "N=0"            
NUMBER.OF.LYMPH.NODES                            "N=2"            
RACE                                             "N=1"            
ETHNICITY                                        "N=0"            
WEIGHT_KG_AT_DIAGNOSIS                           "N=2"            
TUMOR_STATUS                                     "N=0"            
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 "N=150"          
NEOPLASMHISTOLOGICGRADE                          "N=4"            
TOBACCO_SMOKING_YEAR_STOPPED                     "N=0"            
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "N=0"            
TOBACCO_SMOKING_HISTORY                          "N=0"            
PATIENT.AGEBEGANSMOKINGINYEARS                   "N=0"            
RADIATION_TOTAL_DOSE                             "N=1"            
RADIATION_THERAPY_TYPE                           "N=145"          
RADIATION_THERAPY_STATUS                         "N=0"            
RADIATION_THERAPY_SITE                           "N=0"            
RADIATION_ADJUVANT_UNITS                         "N=0"            
PREGNANCIES_COUNT_TOTAL                          "N=0"            
PREGNANCIES_COUNT_STILLBIRTH                     "N=0"            
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "N=18"           
PREGNANCIES_COUNT_LIVE_BIRTH                     "N=0"            
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "N=0"            
PREGNANCIES_COUNT_ECTOPIC                        "N=0"            
POS_LYMPH_NODE_LOCATION                          "N=0"            
MENOPAUSE_STATUS                                 "N=9"            
LYMPHOVASCULAR_INVOLVEMENT                       "N=3"            
LYMPH_NODES_EXAMINED_HE_COUNT                    "N=2"            
LYMPH_NODES_EXAMINED                             "N=0"            
KERATINIZATION_SQUAMOUS_CELL                     "N=0"            
INITIAL_PATHOLOGIC_DX_YEAR                       "N=221"          
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "N=0"            
HEIGHT_CM_AT_DIAGNOSIS                           "N=0"            
CORPUS_INVOLVEMENT                               "N=0"            
CHEMO_CONCURRENT_TYPE                            "N=0"            
CERVIX_SUV_RESULTS                               "N=2"            
AJCC_TUMOR_PATHOLOGIC_PT                         "N=0"            
AGE_AT_DIAGNOSIS                                 "N=30"           
STAGE_EVENT.CLINICAL_STAGE                       "N=0"            
                                                 Associated with                                          
Time to Death                                    " "                                                      
AGE                                              "older"                                                  
PATHOLOGY.T.STAGE                                " "                                                      
PATHOLOGY.N.STAGE                                " "                                                      
PATHOLOGY.M.STAGE                                " "                                                      
HISTOLOGICAL.TYPE                                " "                                                      
RADIATIONS.RADIATION.REGIMENINDICATION           "yes"                                                    
NUMBERPACKYEARSSMOKED                            " "                                                      
NUMBER.OF.LYMPH.NODES                            "higher number.of.lymph.nodes"                           
RACE                                             " "                                                      
ETHNICITY                                        " "                                                      
WEIGHT_KG_AT_DIAGNOSIS                           "higher weight_kg_at_diagnosis"                          
TUMOR_STATUS                                     " "                                                      
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "                                                      
NEOPLASMHISTOLOGICGRADE                          " "                                                      
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                                      
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "                                                      
TOBACCO_SMOKING_HISTORY                          " "                                                      
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                                      
RADIATION_TOTAL_DOSE                             "higher radiation_total_dose"                            
RADIATION_THERAPY_TYPE                           " "                                                      
RADIATION_THERAPY_STATUS                         " "                                                      
RADIATION_THERAPY_SITE                           " "                                                      
RADIATION_ADJUVANT_UNITS                         " "                                                      
PREGNANCIES_COUNT_TOTAL                          " "                                                      
PREGNANCIES_COUNT_STILLBIRTH                     " "                                                      
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "higher patient.patientpregnancyspontaneousabortioncount"
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                                      
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                                      
PREGNANCIES_COUNT_ECTOPIC                        " "                                                      
POS_LYMPH_NODE_LOCATION                          " "                                                      
MENOPAUSE_STATUS                                 " "                                                      
LYMPHOVASCULAR_INVOLVEMENT                       "present"                                                
LYMPH_NODES_EXAMINED_HE_COUNT                    "higher lymph_nodes_examined_he_count"                   
LYMPH_NODES_EXAMINED                             " "                                                      
KERATINIZATION_SQUAMOUS_CELL                     " "                                                      
INITIAL_PATHOLOGIC_DX_YEAR                       "higher initial_pathologic_dx_year"                      
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                                      
HEIGHT_CM_AT_DIAGNOSIS                           " "                                                      
CORPUS_INVOLVEMENT                               " "                                                      
CHEMO_CONCURRENT_TYPE                            " "                                                      
CERVIX_SUV_RESULTS                               "higher cervix_suv_results"                              
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                                      
AGE_AT_DIAGNOSIS                                 "higher age_at_diagnosis"                                
STAGE_EVENT.CLINICAL_STAGE                       " "                                                      
                                                 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Time to Death                                    " "                                                                                       
AGE                                              "N=9"                                                                                     
PATHOLOGY.T.STAGE                                " "                                                                                       
PATHOLOGY.N.STAGE                                " "                                                                                       
PATHOLOGY.M.STAGE                                " "                                                                                       
HISTOLOGICAL.TYPE                                " "                                                                                       
RADIATIONS.RADIATION.REGIMENINDICATION           "N=276"                                                                                   
NUMBERPACKYEARSSMOKED                            " "                                                                                       
NUMBER.OF.LYMPH.NODES                            "N=2"                                                                                     
RACE                                             " "                                                                                       
ETHNICITY                                        " "                                                                                       
WEIGHT_KG_AT_DIAGNOSIS                           "N=2"                                                                                     
TUMOR_STATUS                                     " "                                                                                       
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "                                                                                       
NEOPLASMHISTOLOGICGRADE                          " "                                                                                       
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                                                                       
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "                                                                                       
TOBACCO_SMOKING_HISTORY                          " "                                                                                       
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                                                                       
RADIATION_TOTAL_DOSE                             "N=1"                                                                                     
RADIATION_THERAPY_TYPE                           " "                                                                                       
RADIATION_THERAPY_STATUS                         " "                                                                                       
RADIATION_THERAPY_SITE                           " "                                                                                       
RADIATION_ADJUVANT_UNITS                         " "                                                                                       
PREGNANCIES_COUNT_TOTAL                          " "                                                                                       
PREGNANCIES_COUNT_STILLBIRTH                     " "                                                                                       
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "N=12"                                                                                    
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                                                                       
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                                                                       
PREGNANCIES_COUNT_ECTOPIC                        " "                                                                                       
POS_LYMPH_NODE_LOCATION                          " "                                                                                       
MENOPAUSE_STATUS                                 " "                                                                                       
LYMPHOVASCULAR_INVOLVEMENT                       "N=3"                                                                                     
LYMPH_NODES_EXAMINED_HE_COUNT                    "N=2"                                                                                     
LYMPH_NODES_EXAMINED                             " "                                                                                       
KERATINIZATION_SQUAMOUS_CELL                     " "                                                                                       
INITIAL_PATHOLOGIC_DX_YEAR                       "N=5"                                                                                     
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                                                                       
HEIGHT_CM_AT_DIAGNOSIS                           " "                                                                                       
CORPUS_INVOLVEMENT                               " "                                                                                       
CHEMO_CONCURRENT_TYPE                            " "                                                                                       
CERVIX_SUV_RESULTS                               "N=0"                                                                                     
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                                                                       
AGE_AT_DIAGNOSIS                                 "N=9"                                                                                     
STAGE_EVENT.CLINICAL_STAGE                       " "                                                                                       
                                                 Associated with                                         
Time to Death                                    " "                                                     
AGE                                              "younger"                                               
PATHOLOGY.T.STAGE                                " "                                                     
PATHOLOGY.N.STAGE                                " "                                                     
PATHOLOGY.M.STAGE                                " "                                                     
HISTOLOGICAL.TYPE                                " "                                                     
RADIATIONS.RADIATION.REGIMENINDICATION           "no"                                                    
NUMBERPACKYEARSSMOKED                            " "                                                     
NUMBER.OF.LYMPH.NODES                            "lower number.of.lymph.nodes"                           
RACE                                             " "                                                     
ETHNICITY                                        " "                                                     
WEIGHT_KG_AT_DIAGNOSIS                           "lower weight_kg_at_diagnosis"                          
TUMOR_STATUS                                     " "                                                     
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "                                                     
NEOPLASMHISTOLOGICGRADE                          " "                                                     
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                                     
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "                                                     
TOBACCO_SMOKING_HISTORY                          " "                                                     
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                                     
RADIATION_TOTAL_DOSE                             "lower radiation_total_dose"                            
RADIATION_THERAPY_TYPE                           " "                                                     
RADIATION_THERAPY_STATUS                         " "                                                     
RADIATION_THERAPY_SITE                           " "                                                     
RADIATION_ADJUVANT_UNITS                         " "                                                     
PREGNANCIES_COUNT_TOTAL                          " "                                                     
PREGNANCIES_COUNT_STILLBIRTH                     " "                                                     
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "lower patient.patientpregnancyspontaneousabortioncount"
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                                     
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                                     
PREGNANCIES_COUNT_ECTOPIC                        " "                                                     
POS_LYMPH_NODE_LOCATION                          " "                                                     
MENOPAUSE_STATUS                                 " "                                                     
LYMPHOVASCULAR_INVOLVEMENT                       "absent"                                                
LYMPH_NODES_EXAMINED_HE_COUNT                    "lower lymph_nodes_examined_he_count"                   
LYMPH_NODES_EXAMINED                             " "                                                     
KERATINIZATION_SQUAMOUS_CELL                     " "                                                     
INITIAL_PATHOLOGIC_DX_YEAR                       "lower initial_pathologic_dx_year"                      
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                                     
HEIGHT_CM_AT_DIAGNOSIS                           " "                                                     
CORPUS_INVOLVEMENT                               " "                                                     
CHEMO_CONCURRENT_TYPE                            " "                                                     
CERVIX_SUV_RESULTS                               "lower cervix_suv_results"                              
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                                     
AGE_AT_DIAGNOSIS                                 "lower age_at_diagnosis"                                
STAGE_EVENT.CLINICAL_STAGE                       " "                                                     
                                                        
Time to Death                                    " "    
AGE                                              "N=24" 
PATHOLOGY.T.STAGE                                " "    
PATHOLOGY.N.STAGE                                " "    
PATHOLOGY.M.STAGE                                " "    
HISTOLOGICAL.TYPE                                " "    
RADIATIONS.RADIATION.REGIMENINDICATION           "N=0"  
NUMBERPACKYEARSSMOKED                            " "    
NUMBER.OF.LYMPH.NODES                            "N=0"  
RACE                                             " "    
ETHNICITY                                        " "    
WEIGHT_KG_AT_DIAGNOSIS                           "N=0"  
TUMOR_STATUS                                     " "    
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "    
NEOPLASMHISTOLOGICGRADE                          " "    
TOBACCO_SMOKING_YEAR_STOPPED                     " "    
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "    
TOBACCO_SMOKING_HISTORY                          " "    
PATIENT.AGEBEGANSMOKINGINYEARS                   " "    
RADIATION_TOTAL_DOSE                             "N=0"  
RADIATION_THERAPY_TYPE                           " "    
RADIATION_THERAPY_STATUS                         " "    
RADIATION_THERAPY_SITE                           " "    
RADIATION_ADJUVANT_UNITS                         " "    
PREGNANCIES_COUNT_TOTAL                          " "    
PREGNANCIES_COUNT_STILLBIRTH                     " "    
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "N=6"  
PREGNANCIES_COUNT_LIVE_BIRTH                     " "    
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "    
PREGNANCIES_COUNT_ECTOPIC                        " "    
POS_LYMPH_NODE_LOCATION                          " "    
MENOPAUSE_STATUS                                 " "    
LYMPHOVASCULAR_INVOLVEMENT                       "N=0"  
LYMPH_NODES_EXAMINED_HE_COUNT                    "N=0"  
LYMPH_NODES_EXAMINED                             " "    
KERATINIZATION_SQUAMOUS_CELL                     " "    
INITIAL_PATHOLOGIC_DX_YEAR                       "N=216"
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "    
HEIGHT_CM_AT_DIAGNOSIS                           " "    
CORPUS_INVOLVEMENT                               " "    
CHEMO_CONCURRENT_TYPE                            " "    
CERVIX_SUV_RESULTS                               "N=2"  
AJCC_TUMOR_PATHOLOGIC_PT                         " "    
AGE_AT_DIAGNOSIS                                 "N=21" 
STAGE_EVENT.CLINICAL_STAGE                       " "    
