[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
                                                 Clinical feature                                  
Time to Death                                    "Time to Death"                                   
AGE                                              "AGE"                                             
AGE_mutation.rate                                "AGE_mutation rate"                               
PATHOLOGY.T.STAGE                                "PATHOLOGY T STAGE"                               
PATHOLOGY.N.STAGE                                "PATHOLOGY N STAGE"                               
PATHOLOGY.M.STAGE                                "PATHOLOGY M STAGE"                               
HISTOLOGICAL.TYPE                                "HISTOLOGICAL TYPE"                               
RADIATIONS.RADIATION.REGIMENINDICATION           "RADIATIONS RADIATION REGIMENINDICATION"          
NUMBERPACKYEARSSMOKED                            "NUMBERPACKYEARSSMOKED"                           
NUMBER.OF.LYMPH.NODES                            "NUMBER OF LYMPH NODES"                           
RACE                                             "RACE"                                            
ETHNICITY                                        "ETHNICITY"                                       
WEIGHT_KG_AT_DIAGNOSIS                           "WEIGHT_KG_AT_DIAGNOSIS"                          
TUMOR_STATUS                                     "TUMOR_STATUS"                                    
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 "TUMOR_SAMPLE_PROCUREMENT_COUNTRY"                
NEOPLASMHISTOLOGICGRADE                          "NEOPLASMHISTOLOGICGRADE"                         
TOBACCO_SMOKING_YEAR_STOPPED                     "TOBACCO_SMOKING_YEAR_STOPPED"                    
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "TOBACCO_SMOKING_PACK_YEARS_SMOKED"               
TOBACCO_SMOKING_HISTORY                          "TOBACCO_SMOKING_HISTORY"                         
PATIENT.AGEBEGANSMOKINGINYEARS                   "PATIENT AGEBEGANSMOKINGINYEARS"                  
RADIATION_TOTAL_DOSE                             "RADIATION_TOTAL_DOSE"                            
RADIATION_THERAPY_TYPE                           "RADIATION_THERAPY_TYPE"                          
RADIATION_THERAPY_STATUS                         "RADIATION_THERAPY_STATUS"                        
RADIATION_THERAPY_SITE                           "RADIATION_THERAPY_SITE"                          
PREGNANCIES_COUNT_TOTAL                          "PREGNANCIES_COUNT_TOTAL"                         
PREGNANCIES_COUNT_STILLBIRTH                     "PREGNANCIES_COUNT_STILLBIRTH"                    
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "PATIENT PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT"
PREGNANCIES_COUNT_LIVE_BIRTH                     "PREGNANCIES_COUNT_LIVE_BIRTH"                    
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "PATIENT PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT"
PREGNANCIES_COUNT_ECTOPIC                        "PREGNANCIES_COUNT_ECTOPIC"                       
POS_LYMPH_NODE_LOCATION                          "POS_LYMPH_NODE_LOCATION"                         
MENOPAUSE_STATUS                                 "MENOPAUSE_STATUS"                                
LYMPHOVASCULAR_INVOLVEMENT                       "LYMPHOVASCULAR_INVOLVEMENT"                      
LYMPH_NODES_EXAMINED_HE_COUNT                    "LYMPH_NODES_EXAMINED_HE_COUNT"                   
LYMPH_NODES_EXAMINED                             "LYMPH_NODES_EXAMINED"                            
KERATINIZATION_SQUAMOUS_CELL                     "KERATINIZATION_SQUAMOUS_CELL"                    
INITIAL_PATHOLOGIC_DX_YEAR                       "INITIAL_PATHOLOGIC_DX_YEAR"                      
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "HISTORY_HORMONAL_CONTRACEPTIVES_USE"             
HEIGHT_CM_AT_DIAGNOSIS                           "HEIGHT_CM_AT_DIAGNOSIS"                          
CORPUS_INVOLVEMENT                               "CORPUS_INVOLVEMENT"                              
CHEMO_CONCURRENT_TYPE                            "CHEMO_CONCURRENT_TYPE"                           
CERVIX_SUV_RESULTS                               "CERVIX_SUV_RESULTS"                              
AJCC_TUMOR_PATHOLOGIC_PT                         "AJCC_TUMOR_PATHOLOGIC_PT"                        
AGE_AT_DIAGNOSIS                                 "AGE_AT_DIAGNOSIS"                                
STAGE_EVENT.CLINICAL_STAGE                       "STAGE_EVENT CLINICAL_STAGE"                      
                                                 Statistical test            
Time to Death                                    "Cox regression test"       
AGE                                              "Spearman correlation test" 
AGE_mutation.rate                                "Linear Regression Analysis"
PATHOLOGY.T.STAGE                                "Spearman correlation test" 
PATHOLOGY.N.STAGE                                "Wilcoxon test"             
PATHOLOGY.M.STAGE                                "Kruskal-Wallis test"       
HISTOLOGICAL.TYPE                                "Kruskal-Wallis test"       
RADIATIONS.RADIATION.REGIMENINDICATION           "Wilcoxon test"             
NUMBERPACKYEARSSMOKED                            "Spearman correlation test" 
NUMBER.OF.LYMPH.NODES                            "Spearman correlation test" 
RACE                                             "Kruskal-Wallis test"       
ETHNICITY                                        "Wilcoxon test"             
WEIGHT_KG_AT_DIAGNOSIS                           "Spearman correlation test" 
TUMOR_STATUS                                     "Wilcoxon test"             
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 "Kruskal-Wallis test"       
NEOPLASMHISTOLOGICGRADE                          "Kruskal-Wallis test"       
TOBACCO_SMOKING_YEAR_STOPPED                     "Spearman correlation test" 
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "Spearman correlation test" 
TOBACCO_SMOKING_HISTORY                          "Kruskal-Wallis test"       
PATIENT.AGEBEGANSMOKINGINYEARS                   "Spearman correlation test" 
RADIATION_TOTAL_DOSE                             "Spearman correlation test" 
RADIATION_THERAPY_TYPE                           "Kruskal-Wallis test"       
RADIATION_THERAPY_STATUS                         "Wilcoxon test"             
RADIATION_THERAPY_SITE                           "Kruskal-Wallis test"       
PREGNANCIES_COUNT_TOTAL                          "Spearman correlation test" 
PREGNANCIES_COUNT_STILLBIRTH                     "Spearman correlation test" 
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "Spearman correlation test" 
PREGNANCIES_COUNT_LIVE_BIRTH                     "Spearman correlation test" 
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "Spearman correlation test" 
PREGNANCIES_COUNT_ECTOPIC                        "Spearman correlation test" 
POS_LYMPH_NODE_LOCATION                          "Kruskal-Wallis test"       
MENOPAUSE_STATUS                                 "Kruskal-Wallis test"       
LYMPHOVASCULAR_INVOLVEMENT                       "Wilcoxon test"             
LYMPH_NODES_EXAMINED_HE_COUNT                    "Spearman correlation test" 
LYMPH_NODES_EXAMINED                             "Spearman correlation test" 
KERATINIZATION_SQUAMOUS_CELL                     "Wilcoxon test"             
INITIAL_PATHOLOGIC_DX_YEAR                       "Spearman correlation test" 
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "Kruskal-Wallis test"       
HEIGHT_CM_AT_DIAGNOSIS                           "Spearman correlation test" 
CORPUS_INVOLVEMENT                               "Wilcoxon test"             
CHEMO_CONCURRENT_TYPE                            "Kruskal-Wallis test"       
CERVIX_SUV_RESULTS                               "Spearman correlation test" 
AJCC_TUMOR_PATHOLOGIC_PT                         "Kruskal-Wallis test"       
AGE_AT_DIAGNOSIS                                 "Spearman correlation test" 
STAGE_EVENT.CLINICAL_STAGE                       "Kruskal-Wallis test"       
                                                 Significant variables
Time to Death                                    "N=0"                
AGE                                              "N=2"                
AGE_mutation.rate                                "N=2"                
PATHOLOGY.T.STAGE                                "N=0"                
PATHOLOGY.N.STAGE                                "N=0"                
PATHOLOGY.M.STAGE                                "N=0"                
HISTOLOGICAL.TYPE                                "N=0"                
RADIATIONS.RADIATION.REGIMENINDICATION           "N=0"                
NUMBERPACKYEARSSMOKED                            "N=2"                
NUMBER.OF.LYMPH.NODES                            "N=0"                
RACE                                             "N=0"                
ETHNICITY                                        "N=0"                
WEIGHT_KG_AT_DIAGNOSIS                           "N=0"                
TUMOR_STATUS                                     "N=0"                
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 "N=0"                
NEOPLASMHISTOLOGICGRADE                          "N=0"                
TOBACCO_SMOKING_YEAR_STOPPED                     "N=0"                
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "N=2"                
TOBACCO_SMOKING_HISTORY                          "N=0"                
PATIENT.AGEBEGANSMOKINGINYEARS                   "N=0"                
RADIATION_TOTAL_DOSE                             "N=0"                
RADIATION_THERAPY_TYPE                           "N=0"                
RADIATION_THERAPY_STATUS                         "N=0"                
RADIATION_THERAPY_SITE                           "N=0"                
PREGNANCIES_COUNT_TOTAL                          "N=0"                
PREGNANCIES_COUNT_STILLBIRTH                     "N=0"                
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "N=0"                
PREGNANCIES_COUNT_LIVE_BIRTH                     "N=0"                
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "N=0"                
PREGNANCIES_COUNT_ECTOPIC                        "N=0"                
POS_LYMPH_NODE_LOCATION                          "N=0"                
MENOPAUSE_STATUS                                 "N=2"                
LYMPHOVASCULAR_INVOLVEMENT                       "N=0"                
LYMPH_NODES_EXAMINED_HE_COUNT                    "N=0"                
LYMPH_NODES_EXAMINED                             "N=0"                
KERATINIZATION_SQUAMOUS_CELL                     "N=1"                
INITIAL_PATHOLOGIC_DX_YEAR                       "N=1"                
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "N=0"                
HEIGHT_CM_AT_DIAGNOSIS                           "N=0"                
CORPUS_INVOLVEMENT                               "N=0"                
CHEMO_CONCURRENT_TYPE                            "N=0"                
CERVIX_SUV_RESULTS                               "N=0"                
AJCC_TUMOR_PATHOLOGIC_PT                         "N=0"                
AGE_AT_DIAGNOSIS                                 "N=2"                
STAGE_EVENT.CLINICAL_STAGE                       "N=0"                
                                                 Associated with                           
Time to Death                                    " "                                       
AGE                                              "older"                                   
AGE_mutation.rate                                " "                                       
PATHOLOGY.T.STAGE                                " "                                       
PATHOLOGY.N.STAGE                                " "                                       
PATHOLOGY.M.STAGE                                " "                                       
HISTOLOGICAL.TYPE                                " "                                       
RADIATIONS.RADIATION.REGIMENINDICATION           " "                                       
NUMBERPACKYEARSSMOKED                            "higher numberpackyearssmoked"            
NUMBER.OF.LYMPH.NODES                            " "                                       
RACE                                             " "                                       
ETHNICITY                                        " "                                       
WEIGHT_KG_AT_DIAGNOSIS                           " "                                       
TUMOR_STATUS                                     " "                                       
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "                                       
NEOPLASMHISTOLOGICGRADE                          " "                                       
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                       
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "higher tobacco_smoking_pack_years_smoked"
TOBACCO_SMOKING_HISTORY                          " "                                       
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                       
RADIATION_TOTAL_DOSE                             " "                                       
RADIATION_THERAPY_TYPE                           " "                                       
RADIATION_THERAPY_STATUS                         " "                                       
RADIATION_THERAPY_SITE                           " "                                       
PREGNANCIES_COUNT_TOTAL                          " "                                       
PREGNANCIES_COUNT_STILLBIRTH                     " "                                       
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "                                       
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                       
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                       
PREGNANCIES_COUNT_ECTOPIC                        " "                                       
POS_LYMPH_NODE_LOCATION                          " "                                       
MENOPAUSE_STATUS                                 " "                                       
LYMPHOVASCULAR_INVOLVEMENT                       " "                                       
LYMPH_NODES_EXAMINED_HE_COUNT                    " "                                       
LYMPH_NODES_EXAMINED                             " "                                       
KERATINIZATION_SQUAMOUS_CELL                     "non-keratinizing squamous cell carcinoma"
INITIAL_PATHOLOGIC_DX_YEAR                       "higher initial_pathologic_dx_year"       
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                       
HEIGHT_CM_AT_DIAGNOSIS                           " "                                       
CORPUS_INVOLVEMENT                               " "                                       
CHEMO_CONCURRENT_TYPE                            " "                                       
CERVIX_SUV_RESULTS                               " "                                       
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                       
AGE_AT_DIAGNOSIS                                 "higher age_at_diagnosis"                 
STAGE_EVENT.CLINICAL_STAGE                       " "                                       
                                                 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Time to Death                                    " "                                                                                       
AGE                                              "N=2"                                                                                     
AGE_mutation.rate                                " "                                                                                       
PATHOLOGY.T.STAGE                                " "                                                                                       
PATHOLOGY.N.STAGE                                " "                                                                                       
PATHOLOGY.M.STAGE                                " "                                                                                       
HISTOLOGICAL.TYPE                                " "                                                                                       
RADIATIONS.RADIATION.REGIMENINDICATION           " "                                                                                       
NUMBERPACKYEARSSMOKED                            "N=2"                                                                                     
NUMBER.OF.LYMPH.NODES                            " "                                                                                       
RACE                                             " "                                                                                       
ETHNICITY                                        " "                                                                                       
WEIGHT_KG_AT_DIAGNOSIS                           " "                                                                                       
TUMOR_STATUS                                     " "                                                                                       
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "                                                                                       
NEOPLASMHISTOLOGICGRADE                          " "                                                                                       
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                                                                       
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "N=2"                                                                                     
TOBACCO_SMOKING_HISTORY                          " "                                                                                       
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                                                                       
RADIATION_TOTAL_DOSE                             " "                                                                                       
RADIATION_THERAPY_TYPE                           " "                                                                                       
RADIATION_THERAPY_STATUS                         " "                                                                                       
RADIATION_THERAPY_SITE                           " "                                                                                       
PREGNANCIES_COUNT_TOTAL                          " "                                                                                       
PREGNANCIES_COUNT_STILLBIRTH                     " "                                                                                       
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "                                                                                       
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                                                                       
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                                                                       
PREGNANCIES_COUNT_ECTOPIC                        " "                                                                                       
POS_LYMPH_NODE_LOCATION                          " "                                                                                       
MENOPAUSE_STATUS                                 " "                                                                                       
LYMPHOVASCULAR_INVOLVEMENT                       " "                                                                                       
LYMPH_NODES_EXAMINED_HE_COUNT                    " "                                                                                       
LYMPH_NODES_EXAMINED                             " "                                                                                       
KERATINIZATION_SQUAMOUS_CELL                     "N=1"                                                                                     
INITIAL_PATHOLOGIC_DX_YEAR                       "N=0"                                                                                     
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                                                                       
HEIGHT_CM_AT_DIAGNOSIS                           " "                                                                                       
CORPUS_INVOLVEMENT                               " "                                                                                       
CHEMO_CONCURRENT_TYPE                            " "                                                                                       
CERVIX_SUV_RESULTS                               " "                                                                                       
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                                                                       
AGE_AT_DIAGNOSIS                                 "N=2"                                                                                     
STAGE_EVENT.CLINICAL_STAGE                       " "                                                                                       
                                                 Associated with                          
Time to Death                                    " "                                      
AGE                                              "younger"                                
AGE_mutation.rate                                " "                                      
PATHOLOGY.T.STAGE                                " "                                      
PATHOLOGY.N.STAGE                                " "                                      
PATHOLOGY.M.STAGE                                " "                                      
HISTOLOGICAL.TYPE                                " "                                      
RADIATIONS.RADIATION.REGIMENINDICATION           " "                                      
NUMBERPACKYEARSSMOKED                            "lower numberpackyearssmoked"            
NUMBER.OF.LYMPH.NODES                            " "                                      
RACE                                             " "                                      
ETHNICITY                                        " "                                      
WEIGHT_KG_AT_DIAGNOSIS                           " "                                      
TUMOR_STATUS                                     " "                                      
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "                                      
NEOPLASMHISTOLOGICGRADE                          " "                                      
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                      
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "lower tobacco_smoking_pack_years_smoked"
TOBACCO_SMOKING_HISTORY                          " "                                      
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                      
RADIATION_TOTAL_DOSE                             " "                                      
RADIATION_THERAPY_TYPE                           " "                                      
RADIATION_THERAPY_STATUS                         " "                                      
RADIATION_THERAPY_SITE                           " "                                      
PREGNANCIES_COUNT_TOTAL                          " "                                      
PREGNANCIES_COUNT_STILLBIRTH                     " "                                      
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "                                      
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                      
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                      
PREGNANCIES_COUNT_ECTOPIC                        " "                                      
POS_LYMPH_NODE_LOCATION                          " "                                      
MENOPAUSE_STATUS                                 " "                                      
LYMPHOVASCULAR_INVOLVEMENT                       " "                                      
LYMPH_NODES_EXAMINED_HE_COUNT                    " "                                      
LYMPH_NODES_EXAMINED                             " "                                      
KERATINIZATION_SQUAMOUS_CELL                     "keratinizing squamous cell carcinoma"   
INITIAL_PATHOLOGIC_DX_YEAR                       "lower initial_pathologic_dx_year"       
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                      
HEIGHT_CM_AT_DIAGNOSIS                           " "                                      
CORPUS_INVOLVEMENT                               " "                                      
CHEMO_CONCURRENT_TYPE                            " "                                      
CERVIX_SUV_RESULTS                               " "                                      
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                      
AGE_AT_DIAGNOSIS                                 "lower age_at_diagnosis"                 
STAGE_EVENT.CLINICAL_STAGE                       " "                                      
                                                      
Time to Death                                    " "  
AGE                                              "N=0"
AGE_mutation.rate                                " "  
PATHOLOGY.T.STAGE                                " "  
PATHOLOGY.N.STAGE                                " "  
PATHOLOGY.M.STAGE                                " "  
HISTOLOGICAL.TYPE                                " "  
RADIATIONS.RADIATION.REGIMENINDICATION           " "  
NUMBERPACKYEARSSMOKED                            "N=0"
NUMBER.OF.LYMPH.NODES                            " "  
RACE                                             " "  
ETHNICITY                                        " "  
WEIGHT_KG_AT_DIAGNOSIS                           " "  
TUMOR_STATUS                                     " "  
TUMOR_SAMPLE_PROCUREMENT_COUNTRY                 " "  
NEOPLASMHISTOLOGICGRADE                          " "  
TOBACCO_SMOKING_YEAR_STOPPED                     " "  
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "N=0"
TOBACCO_SMOKING_HISTORY                          " "  
PATIENT.AGEBEGANSMOKINGINYEARS                   " "  
RADIATION_TOTAL_DOSE                             " "  
RADIATION_THERAPY_TYPE                           " "  
RADIATION_THERAPY_STATUS                         " "  
RADIATION_THERAPY_SITE                           " "  
PREGNANCIES_COUNT_TOTAL                          " "  
PREGNANCIES_COUNT_STILLBIRTH                     " "  
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "  
PREGNANCIES_COUNT_LIVE_BIRTH                     " "  
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "  
PREGNANCIES_COUNT_ECTOPIC                        " "  
POS_LYMPH_NODE_LOCATION                          " "  
MENOPAUSE_STATUS                                 " "  
LYMPHOVASCULAR_INVOLVEMENT                       " "  
LYMPH_NODES_EXAMINED_HE_COUNT                    " "  
LYMPH_NODES_EXAMINED                             " "  
KERATINIZATION_SQUAMOUS_CELL                     "N=0"
INITIAL_PATHOLOGIC_DX_YEAR                       "N=1"
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "  
HEIGHT_CM_AT_DIAGNOSIS                           " "  
CORPUS_INVOLVEMENT                               " "  
CHEMO_CONCURRENT_TYPE                            " "  
CERVIX_SUV_RESULTS                               " "  
AJCC_TUMOR_PATHOLOGIC_PT                         " "  
AGE_AT_DIAGNOSIS                                 "N=0"
STAGE_EVENT.CLINICAL_STAGE                       " "  
