Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-A6-2671-01A-01D-1405-02	TCGA-A6-2674-01A-02D-1167-02	TCGA-A6-2676-01A-01D-1167-02	TCGA-A6-2678-01A-01D-1167-02	TCGA-A6-2679-01A-02D-1405-02	TCGA-A6-2680-01A-01D-1405-02	TCGA-A6-2681-01A-01D-1405-02	TCGA-A6-2683-01A-01D-1167-02	TCGA-A6-2684-01A-01D-1405-02	TCGA-A6-3807-01A-01D-1167-02	TCGA-AA-3494-01A-01D-1405-02	TCGA-AA-3495-01A-01D-1405-02	TCGA-AA-3509-01A-01D-1405-02	TCGA-AA-3514-01A-02D-1547-02	TCGA-AA-3516-01A-02D-1167-02	TCGA-AA-3529-01A-02D-1547-02	TCGA-AA-3548-01A-01D-1167-02	TCGA-AA-3549-01A-02D-1167-02	TCGA-AA-3553-01A-01D-1167-02	TCGA-AA-3555-01A-01D-1637-02	TCGA-AA-3558-01A-01D-1167-02	TCGA-AA-3664-01A-01D-1167-02	TCGA-AA-3666-01A-02D-1167-02	TCGA-AA-3672-01A-01D-0957-02	TCGA-AA-3675-01A-02D-1167-02	TCGA-AA-3685-01A-02D-1167-02	TCGA-AA-3688-01A-01D-0957-02	TCGA-AA-3692-01A-01D-0957-02	TCGA-AA-3693-01A-01D-0957-02	TCGA-AA-3715-01A-01D-0957-02	TCGA-AA-3861-01A-01D-1167-02	TCGA-AA-3947-01A-01D-1167-02	TCGA-AA-3956-01A-02D-1167-02	TCGA-AA-3966-01A-01D-1109-02	TCGA-AA-3968-01A-01D-1167-02	TCGA-AA-3970-01A-01D-1109-02	TCGA-AA-3994-01A-01D-1109-02	TCGA-AA-A00U-01A-01D-A077-02	TCGA-AA-A00Z-01A-01D-A077-02	TCGA-AA-A01K-01A-01D-A077-02	TCGA-AA-A01P-01A-21D-A079-02	TCGA-AA-A01R-01A-21D-A079-02	TCGA-AA-A01T-01A-21D-A079-02	TCGA-AA-A01V-01A-23D-A079-02	TCGA-AA-A02K-01A-21D-A079-02	TCGA-AA-A02O-01A-21D-A079-02	TCGA-AA-A02R-01A-01D-A077-02	TCGA-AA-A02Y-01A-43D-A079-02	TCGA-AA-A03F-01A-11D-A079-02	TCGA-AA-A03J-01A-21D-A079-02	TCGA-AY-4070-01A-01D-1109-02	TCGA-AY-4071-01A-01D-1109-02	TCGA-AZ-4308-01A-01D-1405-02	TCGA-AZ-4313-01A-01D-1405-02	TCGA-AZ-4315-01A-01D-1405-02	TCGA-AZ-4614-01A-01D-1405-02	TCGA-AZ-4615-01A-01D-1405-02	TCGA-AZ-4681-01A-01D-1405-02	TCGA-AZ-4682-01B-01D-1405-02	TCGA-AZ-4684-01A-01D-1405-02	TCGA-CA-5256-01A-01D-1405-02	TCGA-CK-4951-01A-01D-1405-02	TCGA-CM-4744-01A-01D-1405-02	TCGA-CM-4746-01A-01D-1405-02	TCGA-CM-4747-01A-01D-1405-02	TCGA-CM-4748-01A-01D-1405-02	TCGA-CM-4750-01A-01D-1405-02	TCGA-CM-4752-01A-01D-1405-02	
Amplification Peak 1	3q11.2  	chr3:90387002-95001999(probes 4137:4160)    	chr3:90449001-94998000(probes 4150:4155)    	chr3:90396001-95004999(probes 4140:4162)    	0.064629	   0.064629		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	2	0	0	1	0	0	0	1	0	2	0	1	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 2	5q31.1  	chr5:134285002-134292999(probes 7266:7279)	chr5:134287001-134291000(probes 7269:7276)	chr5:134286001-134376999(probes 7267:7281)	0.0038281	  0.0038281		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Amplification Peak 3	7p14.1  	chr7:38259002-38726000(probes 9119:9131)    	chr7:38260001-38725999(probes 9120:9130)    	chr7:38259001-39639000(probes 9118:9133)    	0.0033147	  0.0033147		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	1	1	1	1	0	0	1	1	1	0	0	2	1	1	0	2	0	0	2	1	0	0	2	2	2	2	0	1	0	0	2	1	1	2	1	0	0	0	0	1	0	0	1	0	2	0	1	0	2	1	1	0	0	0	1	1	1	1	0	1	0	1	0	1	2	
Amplification Peak 4	8p11.22 	chr8:38093542-38951999(probes 10546:10565)  	chr8:38258001-38676091(probes 10547:10559)  	chr8:38093541-40112010(probes 10545:10615)  	0.0030517	  0.0030517		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	1	1	0	0	0	2	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	2	1	2	1	0	1	0	1	1	1	0	1	0	
Amplification Peak 5	13q12.3 	chr13:18975002-33955000(probes 15657:15787)	chr13:26933001-30665000(probes 15706:15743)	chr13:26933001-30968999(probes 15706:15746)	0.17699	    0.17699		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	1	1	2	2	2	0	2	0	1	2	0	0	0	2	2	1	0	2	0	2	0	0	1	2	0	2	0	0	0	1	0	2	0	1	0	0	0	0	0	1	0	2	0	0	1	0	1	1	2	2	1	0	0	0	2	2	1	0	0	1	0	1	0	1	2	
Amplification Peak 6	14q11.2 	chr14:21725002-22028999(probes 16601:16618)	chr14:21846001-22008000(probes 16606:16611)	chr14:21542001-22042100(probes 16568:16632)	5.0989e-06	 5.0989e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	2	0	2	2	0	2	0	1	0	2	0	2	1	2	1	2	0	2	2	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Amplification Peak 7	17q12   	chr17:35082002-35511330(probes 19400:19425)	chr17:35096001-35495000(probes 19401:19424)	chr17:31541002-36613999(probes 19374:19459)	5.0989e-06	 5.0989e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	2	0	1	0	0	0	0	0	2	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 8	19q13.11	chr19:23976001-32820288(probes 20729:20754)	chr19:32666001-32765000(probes 20744:20747)	chr19:23976002-32845999(probes 20730:20756)	0.042186	   0.042186		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	1	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	1	0	2	0	1	0	2	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	
Amplification Peak 9	20q13.12	chr20:41531002-43781999(probes 21677:21704)	chr20:41604001-43454000(probes 21680:21699)	chr20:41597001-43787999(probes 21678:21706)	0.081061	   0.081061		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	1	2	1	1	2	0	1	2	2	2	1	0	1	1	2	2	0	2	1	2	0	1	2	2	2	2	0	0	0	2	1	2	2	0	1	2	1	0	0	2	0	1	1	0	1	0	2	2	2	2	0	0	2	0	2	2	1	2	0	1	2	1	0	2	2	
Deletion Peak  1	1p36.12	chr1:1-35086996(probes 1:295)                    	chr1:16715002-26441999(probes 176:203)      	chr1:16715002-27479000(probes 176:206)      	0.07802	    0.07802		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	
Deletion Peak  2	3p14.2 	chr3:59472001-61198999(probes 3950:3968)    	chr3:59472002-61073000(probes 3951:3961)    	chr3:59472002-61159679(probes 3951:3966)    	0.090036	   0.090036		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  3	4q22.1 	chr4:91433002-92003999(probes 5523:5566)    	chr4:91567001-91579000(probes 5536:5537)    	chr4:91477821-91696513(probes 5528:5542)    	0.037625	   0.037625		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	1	1	0	1	1	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	
Deletion Peak  4	4q35.2 	chr4:168192002-191154276(probes 6199:6385)	chr4:187556001-191154276(probes 6368:6385)	chr4:177925001-191154276(probes 6298:6385)	0.017113	   0.017113		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	1	1	1	0	0	1	0	0	0	1	1	0	0	0	1	1	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	1	0	1	1	0	0	1	0	0	0	1	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	
Deletion Peak  5	8p22   	chr8:1-30983845(probes 10239:10401)             	chr8:13720743-21419000(probes 10277:10320)  	chr8:1-30994999(probes 10239:10403)             	0.0095753	  0.0095753		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	0	0	1	1	0	0	1	1	1	0	0	0	0	1	0	0	1	0	1	0	1	0	0	1	0	1	0	0	0	0	1	1	0	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	
Deletion Peak  6	8p11.22	chr8:39099379-39516999(probes 10579:10597)  	chr8:39099380-39507158(probes 10580:10594)  	chr8:39099380-39698999(probes 10580:10599)  	0.0095753	  0.0095753		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	1	0	1	0	0	2	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak  7	15q11.1	chr15:1-24844893(probes 17411:17438)       	chr15:1-24844892(probes 17411:17437)       	chr15:1-24946000(probes 17411:17440)       	0.0548	     0.0548		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	2	0	1	1	1	0	1	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	1	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	1	
Deletion Peak  8	16p13.3	chr16:6491002-6592999(probes 18186:18209)    	chr16:6549244-6554000(probes 18203:18204)    	chr16:6096553-7453000(probes 18148:18228)    	5.7201e-16	 5.7201e-16		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	0	0	1	1	1	1	0	0	0	0	0	0	1	1	0	1	0	2	0	0	0	0	1	0	2	0	0	1	1	0	0	0	0	1	0	0	0	0	1	1	
Deletion Peak  9	16q23.1	chr16:77057138-77366999(probes 18838:18857)	chr16:77176284-77193000(probes 18849:18850)	chr16:77059001-77275999(probes 18839:18855)	0.029489	   0.029489		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	1	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 10	17p12  	chr17:10790001-11970794(probes 19099:19107)	chr17:10790002-11856735(probes 19100:19106)	chr17:10790002-12049999(probes 19100:19109)	0.098451	   0.098451		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	1	1	1	1	0	0	0	1	0	2	1	0	1	1	1	0	0	1	0	1	0	0	0	0	1	0	0	1	0	0	1	0	1	1	1	1	0	0	0	1	0	1	1	
Amplification Peak 1 - CN values	3q11.2  	chr3:90387002-95001999(probes 4137:4160)    	chr3:90449001-94998000(probes 4150:4155)    	chr3:90396001-95004999(probes 4140:4162)    	0.064629	   0.064629		Actual Copy Change Given	0.038347	-0.098286	-0.035128	-0.16955	-0.039507	-0.051751	-0.067745	0.60395	0.0060137	-0.01609	-0.0031859	-0.00041585	-0.119	0.002487	0.36591	0.007823	-0.14528	0.019391	-0.016841	0	-0.043657	0.25899	0.46693	-0.013127	-0.0068362	1.6672	-0.010802	-0.09578	0.43759	-0.01903	0.075847	-0.059857	0.72187	-0.27081	1.0306	-0.024524	0.3206	0.050726	-0.015604	0.0026721	-0.014503	0	0.48412	-0.5159	4.1401	-0.048883	-1.1516	0.37463	-0.021372	-0.022744	-0.11155	0.27714	0.0012124	0.0058309	-0.00019626	0.86482	-0.0049427	0.0080567	0.0030522	0	-0.084395	0.0026323	-0.0034627	0.016425	0.013911	0.0090312	0.0086135	-0.26288	
Amplification Peak 2 - CN values	5q31.1  	chr5:134285002-134292999(probes 7266:7279)	chr5:134287001-134291000(probes 7269:7276)	chr5:134286001-134376999(probes 7267:7281)	0.0038281	  0.0038281		Actual Copy Change Given	0.56365	0.44003	0.033912	0.13175	0.30956	0.083725	0.069699	0.74516	0.0011529	0.25195	-0.4629	0.048903	0.057368	0.0076196	-0.050782	0.0033855	0.11668	-0.031713	2.1273	-0.0016762	0.0048079	0.0039166	0.15606	-0.0099565	-0.0050955	-0.026496	-0.43192	-0.0050836	0.038284	0.34926	2.2442	0.058221	0.12278	-0.20386	1.8941	0.0065493	0.77801	-0.52627	-0.031905	0.071283	-0.029057	-0.0067637	-0.36902	-0.0040289	0.53204	0.03863	0.023067	0.24156	0.026918	-0.023683	-0.20206	3.7549	0.071865	0.0058309	0.011221	-0.80721	-0.0048044	-0.82191	0.048335	-0.18207	0	0.032959	0.0084743	0.012903	0.88226	0.13929	0.10359	-0.29536	
Amplification Peak 3 - CN values	7p14.1  	chr7:38259002-38726000(probes 9119:9131)    	chr7:38260001-38725999(probes 9120:9130)    	chr7:38259001-39639000(probes 9118:9133)    	0.0033147	  0.0033147		Actual Copy Change Given	0.74861	-0.2939	0	0.75299	0.71528	0.53519	0.47699	0.11904	0.012978	0.78987	0.52398	0.56756	-0.0501	0.0092546	2.3978	0.60292	0.42219	0.028683	1.7453	0.0015261	0.03628	1.5239	0.75844	0.0253	0.022266	1.1918	2.5005	1.2212	2.0341	0.02436	0.45582	0.08142	0.11387	1.4622	0.59503	0.62388	2.7621	0.89691	-0.022881	0.076072	0.0030522	0.0025803	0.53161	-0.0004517	0.2466	0.81727	0.03049	2.6728	-0.0087314	0.3327	0.2664	0.93421	0.74155	0.50481	0.014159	-0.00291	0.024871	0.84356	0.73341	0.61589	0.41011	0.0043021	0.43851	0.014749	0.4801	0.0087528	0.74918	1.1255	
Amplification Peak 4 - CN values	8p11.22 	chr8:38093542-38951999(probes 10546:10565)  	chr8:38258001-38676091(probes 10547:10559)  	chr8:38093541-40112010(probes 10545:10615)  	0.0030517	  0.0030517		Actual Copy Change Given	-0.72146	0.46314	-0.017108	-0.55096	-0.4329	-0.67114	0.14815	-0.80418	0.0024017	0.21653	-1.0705	1.6723	0.048262	0.80961	0.16444	0.51567	0.51194	-0.68711	-0.46259	-0.0031946	0.93651	0.9094	-0.92518	-0.0047079	0.0035108	0.2882	2.509	-0.79686	-0.033875	0.28141	0.068378	0.048054	-0.52174	0.12623	0.043742	0.00597	0.050677	-0.95396	0.078634	-0.47809	-0.0048254	-0.01758	-0.33806	0.28985	2.6299	0.84593	0.0082911	0.060936	0.051655	-0.0027707	0.80792	-0.0080244	-0.65371	-0.0067813	0.0016525	1.8294	0.8485	6	0.46125	-0.19925	0.50654	-0.0038779	0.41814	0.76907	0.37578	0.0075	0.64213	-0.00013862	
Amplification Peak 5 - CN values	13q12.3 	chr13:18975002-33955000(probes 15657:15787)	chr13:26933001-30665000(probes 15706:15743)	chr13:26933001-30968999(probes 15706:15746)	0.17699	    0.17699		Actual Copy Change Given	0.92249	-0.62789	0.041192	0.66317	0.6246	1.9383	1.1762	0.93997	-0.0031424	1.683	0.058081	0.49666	2.4484	0.018442	0.009443	0.00015785	3.2715	2.9059	0.48475	-0.0039964	0.96152	-0.074996	2.3219	-0.027261	-0.01326	0.82341	1.0207	0.0079175	1.7919	0.11287	0.011679	-0.049342	0.52013	0.15801	1.1305	-0.020549	0.7683	-0.29091	-0.03054	0.041274	-0.018765	0.0068893	0.52598	-0.29831	1.4301	-0.0018014	0.04814	0.71434	0.015608	0.57077	0.73435	1.1292	1.2874	0.52188	0.0051014	-0.0082784	-0.020371	2.5654	1.4674	0.66623	0.0015255	-0.0048461	0.45275	0.073833	0.71754	0.014609	0.77611	1.2732	
Amplification Peak 6 - CN values	14q11.2 	chr14:21725002-22028999(probes 16601:16618)	chr14:21846001-22008000(probes 16606:16611)	chr14:21542001-22042100(probes 16568:16632)	5.0989e-06	 5.0989e-06		Actual Copy Change Given	-0.50898	-0.47716	0.053989	-0.20685	0.1948	-0.1236	0.29171	-0.086916	-0.039894	-0.39441	-0.0053992	-0.0027707	0.038206	-0.012898	2.6676	-0.0013829	3.7801	-0.013771	1.5613	0.0078212	1.182	1.2819	0.23533	0.94323	0.012448	0.47258	-0.32762	1.2848	-0.16719	1.4781	0.78987	1.0627	0.8691	2.3578	-0.22363	0.99468	1.7599	-0.11893	-0.38212	0.21691	0	0.0056882	-0.77197	0.0078704	-0.44073	0.72527	-0.003037	1.5885	-0.012317	-0.38347	-0.027671	-0.13225	-0.43507	-0.021784	0.0034813	-0.15833	0.010327	-0.0047079	-0.23006	0.032986	-0.1445	0.0036076	-0.020412	0.31004	-0.29089	0.010285	0.12196	0.014051	
Amplification Peak 7 - CN values	17q12   	chr17:35082002-35511330(probes 19400:19425)	chr17:35096001-35495000(probes 19401:19424)	chr17:31541002-36613999(probes 19374:19459)	5.0989e-06	 5.0989e-06		Actual Copy Change Given	-0.28655	-0.018216	0.067646	0.18919	-0.11312	-0.029867	-0.30889	-0.047962	-0.60541	0.079303	0.48837	0.58865	0.085654	-0.035288	0.27883	1.1992	0.21146	-0.31313	0.37035	0.0065518	-0.039243	0.059358	-0.33307	0.058055	0.015593	-0.30544	0.12079	0.31017	0.1017	0.038075	0.10818	0.10253	0.51821	0.24373	0.023566	0.72632	6	-0.11067	0.65021	-0.031308	0.068183	0.03344	-0.32266	-0.20404	2.5254	6	-0.049129	0.042024	0.034942	0.027076	6	0.00013863	-0.12005	-0.047395	-0.009011	0.073138	-0.0073237	0	-0.1092	-0.11548	0.051672	-0.019314	-0.096968	-0.093931	-0.03504	-0.018902	0.23986	0.21345	
Amplification Peak 8 - CN values	19q13.11	chr19:23976001-32820288(probes 20729:20754)	chr19:32666001-32765000(probes 20744:20747)	chr19:23976002-32845999(probes 20730:20756)	0.042186	   0.042186		Actual Copy Change Given	-0.032587	0.014749	-0.15827	-0.029857	-0.11182	0.33169	0.32316	1.2447	-0.019683	0.48113	-0.043602	-0.01849	-0.079476	-0.015474	-0.0063728	-0.041743	0.0030522	0.041398	-0.041838	-0.0073359	-0.042195	-0.12679	0.01128	0.077718	0.4635	1.7856	0.044857	-0.31471	-0.063323	0.049692	0.58457	0.24972	0.62315	-0.29	1.563	0.087679	0.55496	-0.27063	1.812	-1.0361	-0.011749	0.011765	-0.31394	0.012816	2.634	0.80655	-0.93093	0.26608	0.045265	0.018803	-0.005261	-0.007472	0.00082337	-0.074144	-0.015082	0.0090535	-0.02968	-0.074945	-0.12304	-0.26997	0.021183	-0.034359	-0.0085766	0.55536	0.40861	-0.027398	-0.1679	0.10278	
Amplification Peak 9 - CN values	20q13.12	chr20:41531002-43781999(probes 21677:21704)	chr20:41604001-43454000(probes 21680:21699)	chr20:41597001-43787999(probes 21678:21706)	0.081061	   0.081061		Actual Copy Change Given	1.4086	-0.15234	-0.013618	0.32286	1.6794	0.89366	0.85459	1.0003	0.0021241	0.86811	3.1301	2.7743	0.91804	0.78488	0.1574	0.56741	0.51892	1.0647	2.9324	-0.0090622	0.91812	0.81848	1.5149	0.024127	0.81371	1.7401	2.1503	0.91986	2.2582	0.024844	0.085001	0.11816	1.1216	0.5062	1.7262	2.0259	0.083442	0.78972	1.2363	0.57535	0.031454	-0.0013682	1.9534	-0.099731	0.7969	0.82932	0	0.75337	0.020606	2.5795	1.3835	2.5397	2.2687	-0.033677	-0.0096356	6	0.039097	1.6533	1.2306	0.60738	1.361	-0.0059522	0.36182	1.3903	0.84021	-0.0077482	2.2768	1.4924	
Deletion Peak  1 - CN values	1p36.12	chr1:1-35086996(probes 1:295)                    	chr1:16715002-26441999(probes 176:203)      	chr1:16715002-27479000(probes 176:206)      	0.07802	    0.07802		Actual Copy Change Given	-0.013234	0.52888	0.024955	0.20121	-0.37493	-0.5418	-0.27845	-0.91043	-0.0013466	0.024784	-0.035329	-0.00085569	-0.73047	-0.015321	0.18241	-0.036047	0.16113	0.055217	-0.48523	0.0036574	-0.00042418	0.038748	-0.31668	0.056093	0	-0.32754	-0.33272	-0.77065	0.016604	0.045299	0.1041	0.14551	-0.0067316	-0.16472	-0.5244	0.063104	0.054376	0.12551	0.016985	-0.52718	0.013443	0.015431	-0.31602	0.010502	-0.26175	0.030591	-0.069024	0.02109	0	-0.34727	-0.21119	-0.016363	-0.1202	-0.056998	0.0032743	-0.094934	0	0.026668	-0.93376	-0.64294	-0.37245	-0.0061376	-0.096308	-0.085457	-0.51841	-0.00061948	-0.17176	-0.43094	
Deletion Peak  2 - CN values	3p14.2 	chr3:59472001-61198999(probes 3950:3968)    	chr3:59472002-61073000(probes 3951:3961)    	chr3:59472002-61159679(probes 3951:3966)    	0.090036	   0.090036		Actual Copy Change Given	0.094201	0.026173	-0.035128	-0.022606	-0.026167	0.0031362	-0.16331	-0.49091	0.0060137	-0.80931	-0.042381	-0.00041585	-0.011313	0.002487	-0.57872	-0.017608	-0.010784	0.019391	-0.040752	0	-0.043657	-0.89755	0.03827	-0.59925	-0.0068362	-0.39403	-0.010802	-0.09578	0.52338	-0.66845	-0.080141	0.052545	0.038206	-0.27834	-0.32837	0.0020805	-0.040345	0.12492	-0.015604	-0.46745	-0.075482	0	0.094994	0.30267	-0.39349	-0.038442	0.03206	-0.030619	-0.021372	-0.0040162	-0.062361	0.34388	-0.63036	0.0058309	-0.00019626	-0.83679	-0.0049427	0.0080567	0.0030522	-0.0053992	-0.084395	0.0026323	-0.0034627	-0.018216	-0.013953	0.0090312	-0.68579	-0.034847	
Deletion Peak  3 - CN values	4q22.1 	chr4:91433002-92003999(probes 5523:5566)    	chr4:91567001-91579000(probes 5536:5537)    	chr4:91477821-91696513(probes 5528:5542)    	0.037625	   0.037625		Actual Copy Change Given	0.012474	0.092315	0.051915	-0.73906	-0.37988	-0.43693	0.19993	-1.0258	-0.57966	-0.21775	0.00013863	-0.00090838	-0.078144	-0.0076332	-0.035863	-0.0027918	-0.71737	-1.3942	0	0.0060915	-0.00022577	-0.0076305	-0.55866	-0.011034	-0.0031708	-0.32161	-0.0026322	-0.14013	0.77725	0.010384	-0.085324	-0.10024	-0.25793	-0.26107	-0.40716	-0.6368	-0.34824	-0.15293	0.010861	0.011876	-0.027261	-0.00072395	0.05156	-0.0023589	0.085842	-0.046479	-0.0033307	-0.13962	-0.040747	-0.40174	-0.23037	-0.45343	0.060928	0.010006	0.019168	0.54209	-0.012672	0.0034687	0.022024	-0.59284	-0.40097	0.013074	-0.45672	0.024341	0.012516	0.0058309	-0.22034	-0.31716	
Deletion Peak  4 - CN values	4q35.2 	chr4:168192002-191154276(probes 6199:6385)	chr4:187556001-191154276(probes 6368:6385)	chr4:177925001-191154276(probes 6298:6385)	0.017113	   0.017113		Actual Copy Change Given	-0.014503	0.27864	0.052503	-0.020607	-0.11617	-0.46001	-0.55651	-0.6087	-0.57966	-0.77592	-0.013609	-0.0011087	-0.80849	0.020648	-0.089399	0.019077	-0.51671	-0.58297	0	0.0060915	0.0252	-0.86803	-0.57912	-0.011034	-0.0031708	-0.32161	-0.011887	-0.15195	0.79773	-0.028755	-0.012989	-0.036397	-0.57072	-0.27894	-0.52279	-0.6368	-0.021907	-0.18016	-0.067241	-0.43558	-0.027261	-0.66426	0.016191	-0.53298	-0.51866	0	-0.0033307	-0.62225	-0.040747	-0.027671	-0.23037	-0.45343	-0.69876	0.02302	0.019168	-0.66321	-0.012672	-0.14335	-0.042922	-0.59284	-0.40097	-0.045578	0.029636	0.013868	0.003202	0.0058309	-0.22094	-0.42613	
Deletion Peak  5 - CN values	8p22   	chr8:1-30983845(probes 10239:10401)             	chr8:13720743-21419000(probes 10277:10320)  	chr8:1-30994999(probes 10239:10403)             	0.0095753	  0.0095753		Actual Copy Change Given	-1.1961	0.13628	-0.021317	-0.62741	-0.4329	-0.67114	-0.60411	-0.70756	0.0024017	-0.55637	-1.0705	-0.59087	-0.82005	0.80961	-0.019772	-0.60383	-0.72093	-0.71593	-0.48208	-0.0031946	0.76667	-0.87094	-1.0016	-0.0047079	0.0035108	-0.82343	-0.85353	-0.83446	-0.033875	0.22562	0	0.027407	-0.52174	0.15308	0.063532	-0.63774	-0.012989	-0.64209	0.078634	-0.47809	-0.0048254	-0.01758	-1.2122	-0.0097852	-0.88307	0.80597	0.0082911	-0.013677	0.051655	-0.37662	-0.47056	-0.0080244	-0.6739	-0.0067813	0.0016525	-0.83072	0.69116	-0.88	-0.81637	-0.27057	0.50654	-0.0038779	0.41814	0.76907	-0.059269	0.0075	0.56116	-0.7037	
Deletion Peak  6 - CN values	8p11.22	chr8:39099379-39516999(probes 10579:10597)  	chr8:39099380-39507158(probes 10580:10594)  	chr8:39099380-39698999(probes 10580:10599)  	0.0095753	  0.0095753		Actual Copy Change Given	1.8984	-0.055229	-0.017108	-1.1467	0.44732	-0.67114	0.14815	-0.69405	0.0024017	0.21653	-1.5	1.6723	0.048262	-0.0026949	-0.037496	-1.1533	0.14801	-0.68711	-0.26443	-0.0031946	0.72514	0.9094	-0.47325	-0.0047079	0.0035108	0.2272	3.0274	0.044007	-0.033875	0.28141	0.068378	0.048054	-0.49462	0.12623	0.043742	0.00597	0.050677	-0.95396	1.0752	-0.47809	-0.0048254	-0.01758	-0.33806	0.28985	-0.55824	0.73936	0.0082911	0.060936	0.051655	-0.0027707	0.021744	-0.0080244	-0.65371	-0.0067813	0.0016525	1.0499	0.754	4.4998	0.46125	-0.39544	0.50654	-0.0038779	0.41814	0.76907	0.37578	0.0075	0.48337	-0.00013862	
Deletion Peak  7 - CN values	15q11.1	chr15:1-24844893(probes 17411:17438)       	chr15:1-24844892(probes 17411:17437)       	chr15:1-24946000(probes 17411:17440)       	0.0548	     0.0548		Actual Copy Change Given	0.035632	0.29899	-0.125	-1.3167	-0.078331	-0.68925	-0.84828	-0.93544	-0.0039727	-0.39196	-0.55427	-0.0030475	0.6057	-0.02169	-0.026173	-0.020339	-1.1296	-0.6937	-0.35373	-0.00014659	-0.071422	0.025618	-0.43972	0.010345	0.023875	-0.30837	-0.37797	-0.3694	-0.61118	0.0022295	-0.11221	-0.040541	-0.0019399	-0.25116	-0.57654	0.026514	-0.023155	-0.77619	-0.085988	-0.21071	0.022304	-0.077409	-0.76009	0.011545	0.30948	-0.036674	0.014431	-0.0060098	0.00012173	0.010842	-0.50401	-0.34228	-0.052509	-0.1246	-0.0049328	0.16118	0.027118	-0.49569	-0.098682	-0.41531	-0.56027	0.0062481	-0.074945	-0.063301	-0.89939	-0.015741	-0.036265	-0.38313	
Deletion Peak  8 - CN values	16p13.3	chr16:6491002-6592999(probes 18186:18209)    	chr16:6549244-6554000(probes 18203:18204)    	chr16:6096553-7453000(probes 18148:18228)    	5.7201e-16	 5.7201e-16		Actual Copy Change Given	0.16751	0.4402	-0.77326	0.056228	-0.98358	0.32213	-0.026597	-1.5	-0.014735	-0.83809	-0.035993	-0.014503	0.033549	-0.014163	-0.035863	-0.029775	0.12771	0.033376	0.39894	-0.014037	0.062847	-1.0006	-0.47238	0.011522	0.034111	-1.2877	-0.31436	0.031155	0.039697	0	-0.67435	-0.32109	-0.98231	-0.9604	-0.0030475	0.067948	0.070099	0.12212	0.058937	-0.0019706	-0.83228	-0.68222	0.95197	-0.83228	0.10941	-1.5	-0.1077	0.79065	0.10073	0.2877	-0.97797	0.37561	-1.3722	-0.056173	-0.024199	-1.1322	-0.76018	-0.038986	-0.17994	-0.0031859	0.0416	-0.66494	0.33178	-0.065581	-0.051856	-0.022195	-0.30392	-0.41993	
Deletion Peak  9 - CN values	16q23.1	chr16:77057138-77366999(probes 18838:18857)	chr16:77176284-77193000(probes 18849:18850)	chr16:77059001-77275999(probes 18839:18855)	0.029489	   0.029489		Actual Copy Change Given	-0.5797	0.004719	-0.99921	-0.59478	0.29915	0.36111	-0.66792	0.80053	-0.014735	0.033549	-0.54865	-0.014503	0.037359	-0.014163	-0.67793	-0.023537	0.10176	-0.72974	0.422	-0.014037	0.062847	-0.22572	-0.057776	-0.76877	0.034111	-0.30869	0.34681	0.02525	0.01832	-0.073171	0.095653	0.10646	0.28248	-0.60574	-0.57427	0.024268	0.010146	0.075454	-0.0086228	-0.0019706	-0.42931	-0.016598	0.081709	-0.12249	-0.1706	0.03369	-0.70413	0.035727	0.013196	0.35422	-0.11535	0.37084	-0.057815	-0.048347	-0.14378	-0.15369	-0.31594	-0.038986	-0.085855	-0.068797	0.022865	-0.010922	-0.060076	-0.042652	-0.035312	-0.022195	0.19026	-0.058731	
Deletion Peak 10 - CN values	17p12  	chr17:10790001-11970794(probes 19099:19107)	chr17:10790002-11856735(probes 19100:19106)	chr17:10790002-12049999(probes 19100:19109)	0.098451	   0.098451		Actual Copy Change Given	-0.36725	0.28137	0.02845	-0.78883	-0.11312	-0.51887	-0.61327	-0.73967	-0.65077	-0.42549	-0.5711	-0.60158	-0.78547	-0.81486	0.042443	-0.039745	-0.74959	-1.0824	-0.4806	0.0065518	-0.039243	-0.14423	-0.37321	0.058055	0.015593	-0.30544	-0.84548	-0.78074	-0.87902	0.038075	-0.093139	0.068955	-0.55597	0.07484	-1.5	-0.57121	0.060936	-0.84973	-0.67253	-0.54881	0.051672	0.03344	-0.32266	0.023349	-0.52675	-0.02151	-0.049129	0.019783	0.034942	-0.35738	-0.23067	-0.20374	-0.71007	-0.047395	-0.009011	-0.82699	-0.0073237	-0.88565	-0.83171	-0.62798	-0.80236	-0.019314	-0.096968	-0.089673	-0.48712	-0.018902	-0.69758	-0.4055	
