		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2q33.1	92 (20%)	358	0.16544	1	0.11403	1	5e-05	0.0334	0.00459	1	0.04314	1	0.04953	1	0.02193	1	0.00088999	0.529	0.29267	1	0.10777	1	0.95142	1	0.67342	1
amp_5p13.2	88 (20%)	362	0.37931	1	0.19279	1	0.0012	0.702	0.54629	1	0.00458	1	0.91357	1	0.2431	1	0.00027	0.171	0.72965	1	0.66388	1	0.75371	1	0.58361	1
amp_5q22.3	46 (10%)	404	0.92215	1	1	1	0.01206	1	0.80462	1	0.3266	1	0.64067	1	0.28982	1	0.12292	1	0.95037	1	0.70149	1	0.35645	1	0.33259	1
amp_6p21.1	96 (21%)	354	0.26556	1	5e-05	0.0334	9.9999e-06	0.00812	0.096129	1	0.5062	1	0.70003	1	0.0093999	1	8.9999e-05	0.0589	0.70612	1	0.77426	1	0.3094	1	0.3966	1
amp_7p21.2	255 (57%)	195	0.0097199	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00013	0.0842	0.00118	0.693	0.00167	0.957	9.9999e-06	0.00812	9.9999e-06	0.00812	0.54429	1	0.45632	1	0.84093	1	0.03406	1
amp_8p11.23	158 (35%)	292	0.30159	1	0.10859	1	9.9999e-06	0.00812	0.3861	1	0.76537	1	0.62453	1	0.0083199	1	0.03123	1	0.35791	1	0.26632	1	0.50522	1	0.12706	1
amp_8p11.21	188 (42%)	262	0.44508	1	0.01858	1	9.9999e-06	0.00812	0.2888	1	0.24246	1	0.02451	1	0.0182	1	0.0050699	1	0.71816	1	0.32335	1	0.53823	1	0.10399	1
amp_8q12.1	236 (52%)	214	0.49017	1	0.0057599	1	9.9999e-06	0.00812	0.0069799	1	0.0099399	1	0.00346	1	0.00192	1	0.00014	0.0904	0.38342	1	0.03721	1	0.27474	1	0.01284	1
amp_8q24.21	260 (58%)	190	0.56079	1	0.02822	1	9.9999e-06	0.00812	0.00058999	0.359	0.0395	1	0.01318	1	0.00036	0.227	5.9999e-05	0.0397	0.71242	1	0.03842	1	0.26487	1	0.01566	1
amp_11p15.5	94 (21%)	356	6.9999e-05	0.0461	0.0054899	1	9.9999e-06	0.00812	2e-05	0.0136	0.00095999	0.567	0.03351	1	2e-05	0.0136	9.9999e-06	0.00812	0.10557	1	9.9999e-06	0.00812	0.94135	1	0.27703	1
amp_12p13.33	111 (25%)	339	0.65599	1	0.79617	1	0.01616	1	0.04895	1	0.42796	1	0.87462	1	0.37376	1	0.81984	1	0.51193	1	0.7956	1	0.62938	1	0.84809	1
amp_13q12.13	275 (61%)	175	2e-05	0.0136	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00485	1	0.01971	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.57404	1	0.8117	1	0.39811	1	0.0156	1
amp_13q22.1	277 (62%)	173	0.00013	0.0842	9.9999e-06	0.00812	9.9999e-06	0.00812	2e-05	0.0136	0.0088499	1	0.04837	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.45224	1	0.99632	1	0.39735	1	0.076989	1
amp_16p11.2	126 (28%)	324	0.00041	0.257	9.9999e-06	0.00812	9.9999e-06	0.00812	0.02548	1	0.03055	1	0.12428	1	0.00047	0.292	9.9999e-06	0.00812	0.89206	1	0.14248	1	0.95923	1	0.061059	1
amp_16q12.1	111 (25%)	339	5e-05	0.0334	9.9999e-06	0.00812	9.9999e-06	0.00812	0.056439	1	0.10999	1	0.18679	1	0.00087999	0.524	9.9999e-06	0.00812	0.97507	1	0.082699	1	0.55542	1	0.02363	1
amp_17p11.2	44 (10%)	406	0.26545	1	0.00394	1	0.041	1	0.086789	1	0.00407	1	0.060879	1	0.0065299	1	0.16018	1	0.54504	1	0.80339	1	0.17308	1	0.064919	1
amp_17q12	114 (25%)	336	0.02573	1	0.01432	1	9.9999e-06	0.00812	0.00053999	0.332	0.14006	1	0.00245	1	5e-05	0.0334	0.00088999	0.529	0.03749	1	0.01407	1	0.53251	1	0.56039	1
amp_17q24.1	106 (24%)	344	0.0168	1	0.0076299	1	9.9999e-06	0.00812	0.00025	0.159	0.062699	1	0.00212	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.01224	1	0.054319	1	0.21139	1	0.53375	1
amp_19p13.2	75 (17%)	375	0.067919	1	0.054289	1	5e-05	0.0334	0.0128	1	0.67546	1	0.38263	1	0.25422	1	0.00181	1	0.34818	1	0.43575	1	0.10392	1	0.02287	1
amp_19q13.11	95 (21%)	355	0.18282	1	0.03131	1	7.9999e-05	0.0526	0.094499	1	0.03413	1	0.31262	1	0.04579	1	0.00014	0.0904	0.46043	1	0.55715	1	0.01766	1	0.00156	0.899
amp_20p12.1	208 (46%)	242	0.04681	1	0.00087999	0.524	9.9999e-06	0.00812	0.12826	1	0.0092699	1	0.26511	1	0.00325	1	9.9999e-06	0.00812	0.26169	1	0.33952	1	0.27849	1	0.522	1
amp_20p11.21	252 (56%)	198	0.00218	1	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00362	1	0.10335	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.16596	1	0.03663	1	0.91919	1	0.04929	1
amp_20q11.21	323 (72%)	127	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00084999	0.507	0.00234	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.82305	1	0.0016	0.918	1	1	0.00414	1
amp_20q12	324 (72%)	126	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00048	0.298	4e-04	0.251	9.9999e-06	0.00812	9.9999e-06	0.00812	0.77508	1	0.00132	0.764	1	1	0.0054499	1
amp_20q13.12	326 (72%)	124	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00036	0.227	0.00033	0.209	9.9999e-06	0.00812	9.9999e-06	0.00812	0.78899	1	0.00244	1	1	1	0.0054699	1
del_1p36.11	168 (37%)	282	9.9999e-05	0.0652	0.0079799	1	9.9999e-06	0.00812	2e-05	0.0136	0.02206	1	0.01826	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.66355	1	0.02106	1	0.92068	1	0.25766	1
del_1p33	123 (27%)	327	0.01554	1	0.55975	1	9.9999e-06	0.00812	0.00019	0.122	0.82987	1	0.49413	1	0.00060999	0.37	9.9999e-05	0.0652	0.71685	1	0.1525	1	1	1	0.35127	1
del_1p13.1	119 (26%)	331	0.085249	1	0.54573	1	9.9999e-06	0.00812	0.01184	1	0.6786	1	0.89294	1	0.0081199	1	5e-04	0.31	0.79932	1	0.16617	1	0.95319	1	0.64335	1
del_1q43	54 (12%)	396	0.061569	1	0.50076	1	9.9999e-06	0.00812	0.03097	1	0.4727	1	0.7169	1	5e-04	0.31	5.9999e-05	0.0397	0.13943	1	0.00056999	0.348	0.02775	1	0.9613	1
del_2p21	17 (4%)	433	0.5927	1	0.86495	1	1	1	0.76484	1	0.8081	1	0.71391	1	0.16052	1	0.20743	1	0.092149	1	0.34713	1	NA	NA	NA	NA
del_2q22.1	24 (5%)	426	0.97304	1	0.53751	1	0.48151	1	0.72369	1	0.085839	1	0.36318	1	0.12056	1	0.31093	1	0.24929	1	0.16559	1	1	1	0.84866	1
del_3p26.2	72 (16%)	378	0.22085	1	0.23399	1	0.00053999	0.332	0.134	1	0.72889	1	0.50086	1	0.21218	1	0.054229	1	0.73897	1	0.78868	1	0.53572	1	0.41037	1
del_3p14.2	88 (20%)	362	0.55441	1	0.83541	1	0.04465	1	0.27382	1	0.5283	1	0.04127	1	0.096369	1	0.13507	1	0.65221	1	0.69858	1	0.12685	1	0.70627	1
del_3q26.31	46 (10%)	404	0.64167	1	0.53872	1	0.064549	1	0.66197	1	0.60135	1	0.83464	1	0.69621	1	0.15002	1	0.15717	1	0.81797	1	0.091809	1	0.70431	1
del_4p16.2	139 (31%)	311	0.00072999	0.438	0.00173	0.99	9.9999e-06	0.00812	0.00057999	0.354	0.02616	1	0.16037	1	0.00194	1	9.9999e-06	0.00812	0.35419	1	0.44716	1	0.14737	1	0.23459	1
del_4q22.1	151 (34%)	299	0.00036	0.227	0.0044	1	9.9999e-06	0.00812	5e-05	0.0334	0.10425	1	0.1547	1	0.00141	0.815	9.9999e-06	0.00812	0.39019	1	0.17283	1	0.31828	1	0.20555	1
del_4q35.1	159 (35%)	291	0.00119	0.697	0.0075999	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.01317	1	0.29656	1	0.00015	0.0964	9.9999e-06	0.00812	0.3625	1	0.41424	1	0.54813	1	0.91334	1
del_5q12.1	105 (23%)	345	0.00106	0.624	0.00355	1	9.9999e-06	0.00812	0.0107	1	0.00095999	0.567	0.03297	1	0.00028	0.178	5.9999e-05	0.0397	0.70452	1	0.56645	1	1	1	0.13914	1
del_5q21.1	127 (28%)	323	0.27578	1	0.04424	1	9.9999e-06	0.00812	0.01267	1	0.02474	1	0.39956	1	0.00122	0.711	2e-05	0.0136	0.94386	1	0.89011	1	0.87005	1	0.49685	1
del_5q22.2	130 (29%)	320	0.01425	1	0.0092399	1	9.9999e-06	0.00812	0.03163	1	0.04772	1	0.34254	1	0.00057999	0.354	2e-05	0.0136	0.9128	1	0.27693	1	0.61562	1	0.45463	1
del_6p25.3	56 (12%)	394	0.85029	1	0.73459	1	0.19738	1	0.03021	1	0.04161	1	0.57187	1	1	1	0.82671	1	0.66733	1	0.939	1	0.055159	1	0.04347	1
del_6q26	62 (14%)	388	0.58601	1	0.39977	1	0.6353	1	0.47689	1	0.082879	1	0.21991	1	0.16643	1	0.43104	1	0.69642	1	0.93787	1	0.44087	1	0.061309	1
del_7q31.1	13 (3%)	437	1	1	0.60096	1	0.089559	1	0.60089	1	0.16493	1	0.46498	1	0.38482	1	0.79227	1	0.79436	1	0.82949	1	NA	NA	NA	NA
del_8p23.3	189 (42%)	261	0.01209	1	0.00018	0.116	9.9999e-06	0.00812	2e-05	0.0136	0.00439	1	0.0082899	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.21877	1	0.051879	1	0.89172	1	0.04409	1
del_8p22	203 (45%)	247	0.00489	1	0.00014	0.0904	9.9999e-06	0.00812	9.9999e-06	0.00812	0.0074299	1	0.00115	0.676	9.9999e-06	0.00812	9.9999e-06	0.00812	0.45276	1	0.01456	1	0.76222	1	0.04844	1
del_8q11.1	30 (7%)	420	0.26083	1	0.096859	1	0.04668	1	0.62823	1	0.26818	1	0.16636	1	0.31785	1	0.01968	1	0.20045	1	0.2951	1	0.66241	1	0.89132	1
del_9p21.3	62 (14%)	388	0.45536	1	0.089329	1	0.00121	0.707	0.072899	1	0.82261	1	0.41017	1	0.15993	1	0.00279	1	0.61803	1	0.25829	1	0.20227	1	0.58152	1
del_10p15.3	80 (18%)	370	0.11499	1	0.10473	1	9.9999e-06	0.00812	0.00073999	0.443	0.02218	1	0.14059	1	0.00123	0.716	7.9999e-05	0.0526	0.45403	1	0.17747	1	0.52049	1	0.02179	1
del_10q21.1	98 (22%)	352	0.00356	1	0.02886	1	9.9999e-06	0.00812	0.0098199	1	0.069609	1	0.25943	1	0.0018	1	9.9999e-05	0.0652	0.75288	1	0.48962	1	0.75448	1	0.73213	1
del_10q23.31	109 (24%)	341	0.096899	1	0.062269	1	9.9999e-06	0.00812	0.00344	1	0.14566	1	0.46987	1	0.00044	0.274	8.9999e-05	0.0589	0.57993	1	0.13618	1	0.35017	1	0.39886	1
del_10q25.2	109 (24%)	341	0.12427	1	0.0173	1	9.9999e-06	0.00812	8.9999e-05	0.0589	0.0062599	1	0.087589	1	2e-05	0.0136	9.9999e-06	0.00812	0.96167	1	0.48601	1	0.52983	1	0.73798	1
del_12p13.2	60 (13%)	390	0.0092199	1	0.00316	1	9.9999e-06	0.00812	0.0079399	1	0.30817	1	0.91762	1	2e-05	0.0136	9.9999e-06	0.00812	0.79449	1	0.35384	1	0.22434	1	0.00218	1
del_14q31.1	150 (33%)	300	9.9999e-06	0.00812	7.9999e-05	0.0526	9.9999e-06	0.00812	2e-05	0.0136	0.00038	0.239	0.01884	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.27772	1	0.02075	1	0.26641	1	0.01458	1
del_15q11.2	177 (39%)	273	0.00042	0.262	0.00070999	0.428	9.9999e-06	0.00812	5e-04	0.31	0.0208	1	0.063789	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.9797	1	0.77867	1	0.25848	1	0.2702	1
del_15q15.2	172 (38%)	278	0.00158	0.908	0.00064999	0.393	9.9999e-06	0.00812	0.00041	0.257	0.0092699	1	0.02503	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.92294	1	0.55549	1	0.15411	1	0.16729	1
del_15q21.1	169 (38%)	281	0.01904	1	0.01485	1	9.9999e-06	0.00812	0.00091999	0.545	0.0094299	1	0.053739	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.88526	1	0.67705	1	0.13695	1	0.12886	1
del_15q22.33	161 (36%)	289	0.00032	0.203	0.00053999	0.332	9.9999e-06	0.00812	0.00024	0.153	0.074369	1	0.03205	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.78732	1	0.85311	1	0.10163	1	0.080219	1
del_16p13.3	56 (12%)	394	0.22832	1	0.061839	1	0.04274	1	0.058419	1	0.39295	1	0.51361	1	0.0419	1	0.084059	1	0.84778	1	0.70074	1	0.61666	1	1	1
del_16q23.1	61 (14%)	389	0.27016	1	0.0056599	1	0.24065	1	0.85189	1	0.14026	1	0.61422	1	0.62765	1	0.02972	1	0.52791	1	0.46328	1	0.72307	1	0.4813	1
del_17p12	254 (56%)	196	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.01222	1	0.00124	0.72	9.9999e-06	0.00812	9.9999e-06	0.00812	0.66807	1	0.02163	1	0.60393	1	0.00141	0.815
del_17q24.3	69 (15%)	381	0.095159	1	0.51507	1	0.00052999	0.326	0.02043	1	0.86742	1	0.17978	1	0.29588	1	0.03858	1	0.72353	1	0.97035	1	0.81028	1	0.43314	1
del_18p11.31	246 (55%)	204	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00070999	0.428	0.01003	1	9.9999e-06	0.00812	9.9999e-06	0.00812	0.83367	1	0.01069	1	0.16003	1	0.00303	1
del_18q12.2	274 (61%)	176	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.004	1	0.00128	0.742	9.9999e-06	0.00812	9.9999e-06	0.00812	0.91635	1	0.02064	1	0.15213	1	0.0050299	1
del_18q21.2	287 (64%)	163	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	9.9999e-06	0.00812	0.00071999	0.433	5e-04	0.31	9.9999e-06	0.00812	9.9999e-06	0.00812	0.38232	1	0.03513	1	0.092829	1	0.0077699	1
del_19p13.3	63 (14%)	387	0.13164	1	0.12489	1	4e-05	0.0268	0.11045	1	0.98141	1	0.21003	1	0.079369	1	0.00021	0.134	0.65412	1	0.0085299	1	0.48577	1	0.28349	1
del_20p12.1	86 (19%)	364	0.04921	1	0.02877	1	2e-05	0.0136	0.00080999	0.484	0.72749	1	0.1974	1	9.9999e-06	0.00812	2e-05	0.0136	0.10373	1	0.01056	1	0.80223	1	0.0475	1
del_21q11.2	141 (31%)	309	0.01586	1	0.069229	1	9.9999e-06	0.00812	0.051059	1	0.16114	1	0.82076	1	0.00063999	0.388	9.9999e-05	0.0652	0.93587	1	0.1258	1	0.6702	1	0.34983	1
del_22q13.32	160 (36%)	290	0.00052999	0.326	0.00024	0.153	9.9999e-06	0.00812	0.00066999	0.405	0.11267	1	0.19973	1	0.00021	0.134	9.9999e-06	0.00812	0.41742	1	0.79177	1	0.73194	1	0.54447	1
