
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_mergedClustering/broadinstitute.org/cancer.genome.analysis/10572/2/merger_clustering.R")
> result <- main("-w/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587245/GDAC_CNMFselectcluster_11587777/COAD-TP.bestclus.txt", "-y/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/COAD-TP/11575762/GDAC_selectBestcluster_11577652/COAD-TP.bestclus.txt", "-c/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587238/GDAC_CNMFselectcluster_11588652/COAD-TP.bestclus.txt", "-d/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/COAD-TP/11575764/GDAC_selectBestcluster_11577643/COAD-TP.bestclus.txt", "-g/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587240/GDAC_CNMFselectcluster_11590503/COAD-TP.bestclus.txt", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587244/GDAC_CNMFselectcluster_11588906/COAD-TP.bestclus.txt", "-iCOAD-TP", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587241/GDAC_CNMFselectcluster_11588614/COAD-TP.bestclus.txt", "-j/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/COAD-TP/11575761/GDAC_selectBestcluster_11578237/COAD-TP.bestclus.txt", "-l/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587237/GDAC_CNMFselectcluster_11589769/COAD-TP.bestclus.txt", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/COAD-TP/11575753/GDAC_selectBestcluster_11578225/COAD-TP.bestclus.txt", "-n/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CNMFClustering_FH/COAD-TP/11587242/GDAC_CNMFselectcluster_11588946/COAD-TP.bestclus.txt", "-p/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_pipelineConsensusClusteringPlus/COAD-TP/11575768/GDAC_selectBestcluster_11577941/COAD-TP.bestclus.txt")
[1] "**** cluster demension ***"
[1] "dim(together):"
[1] 459  13
> q(save="no")
