Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationslistBuiltClassifiers.output	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationslistBuiltClassifiers.output	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationslistBuiltClassifiers.output	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	COADREAD-TP.final_analysis_set.maf	Mutations-Significance_Analysis	Level_4	MAF	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationrate.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationrate.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationslist.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	mutationslist.txt	Mutations-Significance_Analysis	Level_4	text	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
input_maf	COADREAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10381:40	Mutation_CHASM_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_COADREAD-TP.Mutation_CHASM.Level_4.2014101700.0.0	yes
