Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-FA-8693-01A-11D-2389-01	TCGA-FA-A4BB-01A-11D-A31W-01	TCGA-FA-A4XK-01A-11D-A31W-01	TCGA-FA-A6HN-01A-11D-A31W-01	TCGA-FA-A6HO-01A-11D-A31W-01	TCGA-FA-A7DS-01A-11D-A381-01	TCGA-FA-A7Q1-01A-11D-A381-01	TCGA-FA-A82F-01A-11D-A381-01	TCGA-FA-A86F-01A-11D-A381-01	TCGA-FF-8041-01A-11D-2209-01	TCGA-FF-8042-01A-11D-2209-01	TCGA-FF-8043-01A-11D-2209-01	TCGA-FF-8046-01A-11D-2209-01	TCGA-FF-8047-01A-11D-2209-01	TCGA-FF-8061-01A-11D-2209-01	TCGA-FF-8062-01A-11D-2209-01	TCGA-FF-A7CQ-01A-11D-A381-01	TCGA-FF-A7CR-01A-11D-A381-01	TCGA-FF-A7CW-01A-11D-A381-01	TCGA-FF-A7CX-01A-12D-A381-01	TCGA-FM-8000-01A-11D-2209-01	TCGA-G8-6324-01A-11D-2209-01	TCGA-G8-6325-01A-11D-2209-01	TCGA-G8-6326-01A-11D-2209-01	TCGA-G8-6906-01A-11D-2209-01	TCGA-G8-6907-01A-11D-2209-01	TCGA-G8-6909-01A-11D-2209-01	TCGA-G8-6914-01A-11D-2209-01	TCGA-GR-7351-01A-11D-2209-01	TCGA-GR-7353-01A-11D-2209-01	TCGA-GR-A4D4-01A-11D-A31W-01	TCGA-GR-A4D5-01A-11D-A31W-01	TCGA-GR-A4D6-01A-11D-A31W-01	TCGA-GR-A4D9-01B-11D-A31W-01	TCGA-GS-A9TQ-01A-11D-A381-01	TCGA-GS-A9TT-01A-11D-A381-01	TCGA-GS-A9TU-01A-11D-A381-01	TCGA-GS-A9TV-01A-11D-A381-01	TCGA-GS-A9TW-01A-11D-A381-01	TCGA-GS-A9TX-01A-11D-A381-01	TCGA-GS-A9TY-01A-11D-A38W-01	TCGA-GS-A9TZ-01A-11D-A38W-01	TCGA-GS-A9U3-01A-11D-A38W-01	TCGA-GS-A9U4-01A-11D-A38W-01	TCGA-RQ-A68N-01A-11D-A31W-01	TCGA-RQ-A6JB-01A-11D-A31W-01	TCGA-RQ-AAAT-01A-11D-A38W-01	TCGA-VB-A8QN-01A-11D-A381-01	
Amplification Peak  1	1q24.2  	chr1:168767360-169269008(probes 79415:79808)      	chr1:168768709-169268811(probes 79416:79807)      	chr1:120527362-216612109(probes 67830:109307)     	0.00010764	 0.00010764		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	2	0	1	0	1	0	0	0	0	1	0	1	0	0	1	2	1	0	0	0	0	0	1	0	1	0	0	0	2	1	
Amplification Peak  2	2p16.1  	chr2:61104986-61147244(probes 164821:164837)        	chr2:61105060-61143203(probes 164822:164836)        	chr2:58198363-65710034(probes 162955:167072)        	8.6529e-15	 8.6529e-15		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	0	2	2	0	1	0	2	0	0	2	0	0	0	0	0	2	0	0	0	0	1	2	0	0	0	0	0	0	0	2	0	0	0	0	1	1	1	0	0	0	2	2	1	
Amplification Peak  3	3q27.3  	chr3:187616647-187814476(probes 361961:362102)    	chr3:187616779-187814401(probes 361962:362101)    	chr3:187453980-187914016(probes 361887:362190)    	0.0045371	   0.034376		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	2	0	0	1	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	2	0	0	0	1	1	0	0	1	0	1	0	0	0	
Amplification Peak  4	3q29    	chr3:195032857-196137763(probes 366525:366734)    	chr3:195039396-196132154(probes 366526:366733)    	chr3:195039396-196144844(probes 366526:366736)    	0.0045341	   0.013525		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	2	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	2	0	1	0	1	1	2	0	1	0	1	0	0	0	
Amplification Peak  5	5p13.1  	chr5:38366134-39217225(probes 491874:492453)        	chr5:38366531-39216824(probes 491875:492452)        	chr5:38366531-39220054(probes 491875:492455)        	0.10188	    0.10188		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	2	1	0	0	0	0	0	0	
Amplification Peak  6	7p22.3  	chr7:1-4925011(probes 666865:668495)                   	chr7:2072089-2100685(probes 667205:667213)            	chr7:2072089-2103667(probes 667205:667216)            	0.21389	    0.21389		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	1	0	0	2	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	2	1	1	1	0	1	0	1	0	1	0	0	1	2	0	1	0	0	0	0	0	
Amplification Peak  7	7q21.3  	chr7:68184133-126346892(probes 702098:731327)      	chr7:97008474-97016983(probes 716357:716361)        	chr7:97008474-97018233(probes 716357:716364)        	0.20555	    0.20555		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	1	0	0	1	0	0	2	0	0	0	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	1	0	2	0	1	0	0	1	1	0	0	0	0	0	1	0	
Amplification Peak  8	8q24.23 	chr8:113190838-146364022(probes 809906:829805)    	chr8:138319450-138390864(probes 826675:826727)    	chr8:126156755-146364022(probes 817964:829805)    	0.017571	   0.017571		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	1	0	2	0	1	1	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	1	0	1	1	1	0	0	0	0	
Amplification Peak  9	12q21.1 	chr12:51032700-78338797(probes 1081965:1098266)    	chr12:72172891-72288761(probes 1094548:1094608)    	chr12:71544675-74257795(probes 1094265:1095651)    	0.082459	   0.082459		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	1	1	1	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	1	1	1	0	0	1	0	1	0	
Amplification Peak 10	14q32.31	chr14:100781012-101872298(probes 1233937:1234604)	chr14:100787565-101872186(probes 1233938:1234603)	chr14:100787565-101872685(probes 1233938:1234606)	0.16195	    0.16195		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 11	16p12.2 	chr16:23898225-23998888(probes 1290932:1291001)    	chr16:23900929-23997987(probes 1290933:1291000)    	chr16:23900929-24006904(probes 1290933:1291003)    	0.23142	    0.23142		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	
Amplification Peak 12	18q21.2 	chr18:48582939-78077248(probes 1385250:1401236)    	chr18:51697049-53379415(probes 1387284:1388182)    	chr18:51697049-53395147(probes 1387284:1388185)    	0.12623	    0.12623		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	1	1	0	1	0	0	2	1	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	2	2	0	1	0	0	0	1	0	0	0	1	0	
Amplification Peak 13	19q13.43	chr19:55709593-57052302(probes 1423602:1424212)    	chr19:56637492-57051286(probes 1423978:1424211)    	chr19:55735221-57052651(probes 1423603:1424214)    	0.016376	   0.016376		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	1	1	0	2	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	
Amplification Peak 14	Xq27.3  	chrX:144689696-144696094(probes 1559535:1559544)  	chrX:144690592-144695602(probes 1559536:1559543)  	chrX:144690592-144705887(probes 1559536:1559546)  	0.022692	   0.022692		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	2	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	
Deletion Peak  1	1p36.32 	chr1:1-48649489(probes 1:24055)                  	chr1:1-3821870(probes 1:313)                        	chr1:1-6962930(probes 1:2297)                       	0.011937	   0.057531		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	1	0	0	1	0	0	0	0	1	0	0	0	
Deletion Peak  2	1p13.1  	chr1:116959687-117120066(probes 65718:65800)  	chr1:117051820-117120066(probes 65783:65800)    	chr1:116521859-117666590(probes 65414:66151)    	0.00025934	 0.00052806		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	
Deletion Peak  3	1q43    	chr1:93485263-249250621(probes 51863:129199)   	chr1:242065222-242355431(probes 126362:126475)  	chr1:223706994-249250621(probes 114053:129199)  	0.001789	   0.001789		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	0	0	1	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	
Deletion Peak  4	2q23.1  	chr2:122489933-168731067(probes 193171:218074)	chr2:148775624-149276576(probes 206577:206795)  	chr2:135695300-164375273(probes 199455:215580)  	0.011502	   0.011502		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	
Deletion Peak  5	3p21.31 	chr3:42578769-50196417(probes 284679:288318)    	chr3:49500957-49588746(probes 288067:288087)      	chr3:49306893-49555232(probes 288003:288076)      	0.017027	   0.017213		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	1	1	0	
Deletion Peak  6	4q35.1  	chr4:167652787-191154276(probes 458990:469774)	chr4:185509761-186421723(probes 468228:468316)  	chr4:179868034-191154276(probes 465493:469774)  	0.037489	   0.040791		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	1	0	1	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	
Deletion Peak  7	5q33.3  	chr5:157281809-158744166(probes 556300:557287)	chr5:158121691-158529491(probes 556888:557155)  	chr5:157546599-158577287(probes 556481:557183)  	0.017027	   0.017027		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	
Deletion Peak  8	6p21.32 	chr6:31167499-33114170(probes 589546:589712)    	chr6:32933223-32955975(probes 589583:589588)      	chr6:30800327-32985198(probes 589372:589628)      	0.011937	   0.011937		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	
Deletion Peak  9	6q14.1  	chr6:76307902-111139036(probes 612035:631545)  	chr6:79642076-79792746(probes 613808:613867)      	chr6:76424899-140119909(probes 612085:648851)    	0.00025712	   0.001789		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	0	1	0	0	1	0	1	0	0	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	1	0	0	1	1	0	1	0	
Deletion Peak 10	6q22.32 	chr6:96022438-139502638(probes 622565:648496)  	chr6:126175186-126670594(probes 639936:640181)  	chr6:76424899-140119909(probes 612085:648851)    	0.00052806	   0.066847		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	1	0	1	0	0	0	0	1	0	1	1	1	0	0	0	0	1	0	0	1	1	0	1	1	
Deletion Peak 11	6q23.3  	chr6:137860913-138410514(probes 647416:647779)	chr6:138182417-138214040(probes 647658:647668)  	chr6:76424899-140119909(probes 612085:648851)    	3.8116e-07	 0.00044539		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	1	0	1	1	1	0	0	1	0	1	0	0	1	1	1	1	1	
Deletion Peak 12	7q33    	chr7:117853365-159138663(probes 726782:748225)	chr7:134125919-134146459(probes 735553:735564)  	chr7:134129751-134167132(probes 735556:735576)  	0.035109	   0.034296		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	1	0	
Deletion Peak 13	8p23.2  	chr8:1-33334473(probes 748226:767934)             	chr8:2784419-4854274(probes 749013:750438)          	chr8:3520602-3544535(probes 749726:749727)          	0.17714	     0.1656		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	1	0	0	1	0	0	1	
Deletion Peak 14	8q12.1  	chr8:54752291-66514953(probes 776765:783849)    	chr8:59713200-60034328(probes 779831:780065)      	chr8:59869733-59872874(probes 779949:779950)      	0.023211	   0.021103		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	
Deletion Peak 15	9p21.3  	chr9:21931610-22448737(probes 843276:843611)    	chr9:21959052-21997722(probes 843298:843311)      	chr9:21550593-23517122(probes 843080:844284)      	4.6366e-22	 4.6366e-22		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	1	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	1	1	1	0	0	0	0	0	0	0	1	1	0	0	
Deletion Peak 16	10q23.31	chr10:90534760-91090085(probes 950753:951152)  	chr10:90561844-90582743(probes 950781:950801)    	chr10:89531347-91450250(probes 950020:951425)    	0.00049123	 0.00049123		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	
Deletion Peak 17	12p13.2 	chr12:1-22595769(probes 1056056:1068585)         	chr12:11795940-12048611(probes 1061782:1062113)  	chr12:11712846-13986594(probes 1061737:1063403)  	0.12173	    0.12704		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	
Deletion Peak 18	13q14.2 	chr13:48875329-49064807(probes 1148651:1148880)	chr13:48960484-49022512(probes 1148784:1148856)  	chr13:48971579-49014333(probes 1148793:1148840)  	0.017027	   0.017027		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	1	
Deletion Peak 19	15q21.1 	chr15:44953604-45026122(probes 1246548:1246583)	chr15:45001788-45013397(probes 1246562:1246571)  	chr15:40473221-45423888(probes 1244571:1246658)  	7.2452e-05	 7.2452e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	0	1	1	0	0	1	0	0	0	0	0	0	1	0	0	
Deletion Peak 20	16p13.13	chr16:10910547-11030197(probes 1286156:1286252)	chr16:10970628-11030197(probes 1286201:1286252)  	chr16:10910547-11010643(probes 1286156:1286234)  	0.026332	    0.02379		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	
Deletion Peak 21	16q23.1 	chr16:78098006-79299841(probes 1313928:1315001)	chr16:78129058-79247026(probes 1313959:1314972)  	chr16:78583258-78586506(probes 1314466:1314467)  	0.15034	    0.15181		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 22	17p13.1 	chr17:1-62229443(probes 1321548:1348895)         	chr17:7458583-7523773(probes 1324660:1324679)      	chr17:7469079-7473456(probes 1324665:1324666)      	0.18242	     0.1944		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	1	1	0	0	1	0	1	1	
Deletion Peak 23	17q24.1 	chr17:62970616-63525081(probes 1349220:1349601)	chr17:63003700-63057650(probes 1349236:1349269)  	chr17:62948574-63223948(probes 1349209:1349375)  	0.013269	   0.013752		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	1	1	
Deletion Peak 24	19p13.2 	chr19:8000602-8118949(probes 1403528:1403565)    	chr19:8017820-8073463(probes 1403532:1403549)      	chr19:8042237-8053104(probes 1403541:1403542)      	0.032454	   0.032335		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	
Deletion Peak 25	19q13.2 	chr19:42567946-42801342(probes 1418608:1418671)	chr19:42634499-42732964(probes 1418631:1418655)  	chr19:42598507-42805635(probes 1418617:1418672)  	0.069584	   0.072612		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	
Deletion Peak 26	22q13.31	chr22:41635693-51304566(probes 1494930:1500024)	chr22:45585805-45650620(probes 1497343:1497384)  	chr22:45610374-45611450(probes 1497364:1497365)  	0.2126	    0.21964		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak 27	Xq28    	chrX:57927912-155270560(probes 1523853:1563844)	chrX:150860349-150893207(probes 1562954:1562969)	chrX:150867744-150870526(probes 1562959:1562960)	0.21501	    0.21964		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	
Amplification Peak  1 - CN values	1q24.2  	chr1:168767360-169269008(probes 79415:79808)      	chr1:168768709-169268811(probes 79416:79807)      	chr1:120527362-216612109(probes 67830:109307)     	0.00010764	 0.00010764		Actual Copy Change Given	0.0024969	0.25275	-0.0038779	-0.00055444	0.0049969	0.028035	0.86789	-0.049734	0.38651	-0.018765	-0.0088526	0.0062481	-0.0011087	0.82902	0.0282	0.01276	0.02539	0.0098669	1.0525	0	0.74255	0.001803	0.20564	0.00027728	-0.0017424	0	0.013213	0.56152	0.0054139	0.58218	0.013911	0.0011093	0.50654	1.5345	0.45912	0.020991	0.0055974	-0.017666	-0.016429	-0.014104	0.61661	-0.0031859	0.37573	0.037359	-0.30815	0.0079175	3.6569	0.51926	
Amplification Peak  2 - CN values	2p16.1  	chr2:61104986-61147244(probes 164821:164837)        	chr2:61105060-61143203(probes 164822:164836)        	chr2:58198363-65710034(probes 162955:167072)        	8.6529e-15	 8.6529e-15		Actual Copy Change Given	0.012516	0.0034163	0.36379	0.00069327	-0.18451	0.030708	0.93079	3.6569	-0.01849	0.37446	0.025671	3.6569	0.0114	-0.0058398	0.91299	0.0037432	0.0051359	0	0.0044411	-0.027808	2.7332	-0.0066432	-0.0012473	0.011121	0.0037465	0.74727	1.9622	0.0097276	0.033408	0.0030522	-0.0010006	0.0038854	-0.0016629	0.0035131	0.95353	-0.00030903	0.010051	0	0.0040243	0.31306	0.48889	0.23117	-0.040111	0	0.014609	2.0281	3.6569	0.88046	
Amplification Peak  3 - CN values	3q27.3  	chr3:187616647-187814476(probes 361961:362102)    	chr3:187616779-187814401(probes 361962:362101)    	chr3:187453980-187914016(probes 361887:362190)    	0.0045371	   0.034376		Actual Copy Change Given	0.013632	0.00091824	0.98494	0.0066653	1.1381	0.035692	0.020886	0.26059	0.21115	-0.0026322	3.6569	0.010842	0.0007857	0.028481	0.011539	0.007319	0.077574	0.014749	0.52748	-0.91845	0.0004385	0.0036076	-0.28834	0.0024183	0.012097	0	0.016916	0.51682	0.019363	0.0015255	0.66882	0.0038854	0.49787	0.026092	1.905	0.062651	0.019827	0.032281	0.19345	0.37397	0.069382	-0.26649	0.76863	0.0075	0.43665	0.019783	-0.30298	0.017264	
Amplification Peak  4 - CN values	3q29    	chr3:195032857-196137763(probes 366525:366734)    	chr3:195039396-196132154(probes 366526:366733)    	chr3:195039396-196144844(probes 366526:366736)    	0.0045341	   0.013525		Actual Copy Change Given	0.013632	0.00091824	0.026795	0.0066653	1.1381	0.035692	0.020886	0.26059	0.21115	-0.0026322	0.70513	0.010842	0.0007857	0.028481	0.011539	0.007319	0.077574	0.042449	0.52748	0.042449	0.0004385	0.0036076	-0.28834	0.0024183	0.012097	0	0.016916	0.54189	0.019363	0.0015255	0.66882	0.0038854	0.49787	0.026092	1.6847	0.028945	0.53403	0.032281	0.19345	0.37397	3.6569	-0.26649	0.76863	0.0075	0.4158	0.019783	-0.30298	0.017264	
Amplification Peak  5 - CN values	5p13.1  	chr5:38366134-39217225(probes 491874:492453)        	chr5:38366531-39216824(probes 491875:492452)        	chr5:38366531-39220054(probes 491875:492455)        	0.10188	    0.10188		Actual Copy Change Given	-0.00041585	-0.00060681	-0.016017	0.00597	0.0024969	-0.0068053	0.88104	3.6569	0.077718	0.36756	-0.028747	-0.017239	0.0026357	-0.0051361	-0.038443	-0.0044636	-0.026975	-0.011473	0	0.014609	-0.0038553	0.0037465	0.074655	0	0.0091705	0.0013868	0.48122	-0.005814	-0.0022168	-0.01354	-0.02763	0	-0.012438	0.0058309	0.040325	0.014609	-0.012945	0.0049969	0.31594	0.12152	0.95468	0.51089	0.040853	-0.0015243	-0.0078957	0.008892	-0.34694	0.0056919	
Amplification Peak  6 - CN values	7p22.3  	chr7:1-4925011(probes 666865:668495)                   	chr7:2072089-2100685(probes 667205:667213)            	chr7:2072089-2103667(probes 667205:667216)            	0.21389	    0.21389		Actual Copy Change Given	-0.0041546	0.0072729	0.94527	0.00041593	0.76926	0.019198	0.00248	2.8561	0.026514	0.022304	0.75343	0.013826	0	0.012237	0.05025	0.00027402	-0.0071958	-0.0041546	0.5493	0.0095513	0.80231	-0.0027707	0.00027728	0.0024969	0.018791	0.0014241	-0.0018014	1.0293	0.422	0.59674	0.62617	-0.0013858	0.51594	-0.0013858	0.49933	-0.020275	0.52579	-0.035585	-0.66966	0.35953	0.99779	-0.0078863	0.38051	-0.16688	0.0040243	-0.010232	0.088258	0.0043021	
Amplification Peak  7 - CN values	7q21.3  	chr7:68184133-126346892(probes 702098:731327)      	chr7:97008474-97016983(probes 716357:716361)        	chr7:97008474-97018233(probes 716357:716364)        	0.20555	    0.20555		Actual Copy Change Given	-0.0041546	0.077376	0.93508	0.00041593	0.76926	-0.040142	0	0.23303	0.026514	0	1.342	0.0075	0	0.012237	0.05025	0.00027402	1.4269	-0.0041546	0.52704	0.0038953	0.74141	-0.0027707	0.00027728	0.0024969	0.006109	0.0030522	-0.0042929	-0.0013858	-0.0087146	0.57291	0.62617	-0.0013858	0.4951	-0.0013858	1.2347	0.023426	0.49649	-0.041325	-0.33756	0.2524	0.47495	-0.0078863	-0.010493	-0.16688	0.010564	-0.0036011	0.82728	0.0043021	
Amplification Peak  8 - CN values	8q24.23 	chr8:113190838-146364022(probes 809906:829805)    	chr8:138319450-138390864(probes 826675:826727)    	chr8:126156755-146364022(probes 817964:829805)    	0.017571	   0.017571		Actual Copy Change Given	0.0027745	-0.0097327	0.019083	-0.0013858	0.35855	0.02242	0.91175	-0.078767	0.11213	0.38584	1.9592	0.72641	-0.0040162	0.0056919	0.024689	-0.0036044	0.49199	-0.038034	-0.0087146	-0.052994	-0.0049619	0	0.0040243	-0.010784	0.058081	0.001803	0.006109	0.0040243	0.016146	0.57165	-0.025483	-0.0030475	-0.01849	0.016146	1.5224	-0.10867	-0.03227	-0.025756	0.86577	0.27853	-0.14811	0.4801	0.10027	0.29326	-0.33018	0.001803	0.026654	-0.010508	
Amplification Peak  9 - CN values	12q21.1 	chr12:51032700-78338797(probes 1081965:1098266)    	chr12:72172891-72288761(probes 1094548:1094608)    	chr12:71544675-74257795(probes 1094265:1095651)    	0.082459	   0.082459		Actual Copy Change Given	0.0072791	0.0018893	0.89568	-0.00069303	-0.21317	0.69201	0.84551	0.82764	0.024969	0.39861	-0.00243	2.2208	0.004719	-0.0051227	-0.0090566	0.0059667	0	0.51184	0.0024969	0.013353	0.00057716	-0.00013862	0.00041593	0.0023581	0.00083195	0	0.056228	-0.00038168	0.0027745	-0.0065886	0.013213	0.161	-0.0012473	0.0084743	0.042222	0.9945	-0.00023285	0.05908	-0.0077482	0.19786	0.49424	0.2573	-0.0070963	-0.00039263	0.43075	0.0086135	0.15218	-0.012024	
Amplification Peak 10 - CN values	14q32.31	chr14:100781012-101872298(probes 1233937:1234604)	chr14:100787565-101872186(probes 1233938:1234603)	chr14:100787565-101872685(probes 1233938:1234606)	0.16195	    0.16195		Actual Copy Change Given	0.015447	0.0013344	-0.032777	0.0015255	0.024127	-0.021893	0.0026188	3.6569	0.023426	-0.017529	-0.018353	0.011261	0.00057605	-0.016292	0.0063551	0.008471	-0.024798	-0.00041585	0.0054589	0.0079175	-0.0013633	-0.0044312	0.0041632	-0.0031859	0.00041593	0.0015255	-0.026441	0.0072217	0.033114	0.61262	0.040185	0.00013863	0.0051359	-0.027124	0.030366	-0.053522	-0.0036952	0.044169	-0.0087521	-0.0066432	-0.01354	-0.27428	0.0077394	-0.00069303	0.036512	0.0049969	-0.33618	-0.034631	
Amplification Peak 11 - CN values	16p12.2 	chr16:23898225-23998888(probes 1290932:1291001)    	chr16:23900929-23997987(probes 1290933:1291000)    	chr16:23900929-24006904(probes 1290933:1291003)    	0.23142	    0.23142		Actual Copy Change Given	-0.013264	-0.0065572	0.4375	0.00069327	-0.18559	-0.025643	0.86929	2.3169	-0.023977	-0.017254	0.0084743	0.77445	-0.0091286	0.0058309	-0.0033243	-0.0097191	-0.017116	-0.012713	-0.0091784	-0.022195	0.74559	-0.0085766	0.0013868	0.0057313	-0.033814	0.001803	0.51594	0.0091579	0.0013868	0.014616	0.73625	-0.0049844	0.014609	-0.015674	-0.021456	-0.060211	0.0047635	-0.0069195	0.0041632	0	0.45922	0.19406	0.019463	-0.014233	0.32511	-0.0026322	-0.00041585	-0.013127	
Amplification Peak 12 - CN values	18q21.2 	chr18:48582939-78077248(probes 1385250:1401236)    	chr18:51697049-53379415(probes 1387284:1388182)    	chr18:51697049-53395147(probes 1387284:1388185)    	0.12623	    0.12623		Actual Copy Change Given	-0.0047079	0.0032774	1.9482	0.0058309	0.43795	0.75105	0.0046942	0.86771	0.071966	-0.017666	2.6338	0.80733	-0.0017889	0.01433	-0.011198	-0.011063	1.7871	0.53011	1.0394	0.0066653	0.003908	0.0029133	-0.28049	-0.012713	0	-0.0018014	-0.0042929	0.52237	0.016845	-0.0089608	0.00097064	0.0027745	0.51368	0.0040243	0.040241	1.012	2.4532	0.089127	0.59332	-0.0123	-0.55698	-0.011224	0.37343	-0.0078863	0.018663	0.0040243	0.44342	0.0021866	
Amplification Peak 13 - CN values	19q13.43	chr19:55709593-57052302(probes 1423602:1424212)    	chr19:56637492-57051286(probes 1423978:1424211)    	chr19:55735221-57052651(probes 1423603:1424214)    	0.016376	   0.016376		Actual Copy Change Given	-0.029857	-0.014142	0.023005	-0.005814	0.12064	0.69089	-0.043483	2.4355	0.55691	0.35545	0.038206	-0.013402	-0.019226	-0.063301	-0.028081	-0.020827	-0.022058	0.47375	-0.014641	-0.044009	-0.0092442	-0.013953	-0.0089906	-0.0040162	-0.04211	-0.0029091	0.40477	-0.0030475	-0.031496	0.012206	-0.62255	-0.023703	0.0065262	-0.07561	-0.085012	0.89287	0.54318	-0.01106	0	0.026935	0.3206	0.018803	0.045526	-0.0077482	0.0011093	-0.018765	-0.03095	-0.04048	
Amplification Peak 14 - CN values	Xq27.3  	chrX:144689696-144696094(probes 1559535:1559544)  	chrX:144690592-144695602(probes 1559536:1559543)  	chrX:144690592-144705887(probes 1559536:1559546)  	0.022692	   0.022692		Actual Copy Change Given	-0.016088	0.027304	0.14424	3.6569	-0.087181	0.032116	-0.13057	0.084852	0	0.39961	1.1484	0.48113	0.022444	-0.11116	-0.075166	-0.012707	0.01177	0.0062481	0.071797	-0.055507	0.065393	-0.011887	-0.0037395	0.0026357	-0.044822	0.042449	0.049256	0.098997	-0.00069303	-0.025817	-0.049559	0.012516	0.022725	0.013911	-0.077559	-0.0077537	0.061897	0.012237	-0.06213	0.072253	-0.72225	0.064511	0.09329	0.014609	0.26963	-0.019863	1.0126	-0.013402	
Deletion Peak  1 - CN values	1p36.32 	chr1:1-48649489(probes 1:24055)                  	chr1:1-3821870(probes 1:313)                        	chr1:1-6962930(probes 1:2297)                       	0.011937	   0.057531		Actual Copy Change Given	0.0024969	-0.0044835	-0.022677	-0.0056757	-0.16807	-0.043761	-0.9545	-0.1205	-0.029284	-0.018765	-0.017666	0.015866	-0.0011087	-0.045093	-0.054464	-0.047232	-0.032996	-0.030256	-0.0016629	0	-0.88084	-0.0066432	-0.28236	0.00027728	-0.014916	0	-0.56863	-0.00097017	0.0054139	-0.6215	0.013911	-0.02122	0.0073609	-0.034631	-0.4822	-0.039387	-0.5473	-0.043466	-0.045239	-0.74586	-0.036982	-0.0031859	0.00051581	0.037359	-0.369	-0.015054	-0.015054	-0.030404	
Deletion Peak  2 - CN values	1p13.1  	chr1:116959687-117120066(probes 65718:65800)  	chr1:117051820-117120066(probes 65783:65800)    	chr1:116521859-117666590(probes 65414:66151)    	0.00025934	 0.00052806		Actual Copy Change Given	0.0024969	-0.0071111	-0.0056757	-0.44566	-0.16807	-1.2929	-0.0047246	-0.049734	0.022112	-0.018765	-0.009175	0.0066859	-0.0011087	0.01419	0.0282	0.00023203	-0.55377	-0.53165	0.0036076	0	0.0032136	0.001803	-0.27965	0.00027728	-0.0017424	0	-0.44717	-0.0026111	0.0054139	-0.63906	0.013911	0.0011093	-0.50567	0.013353	-0.43834	0.020991	0.0055974	-0.017666	-0.016429	-0.014104	0.5463	-0.0031859	0.00051581	0.037359	-0.30815	0.0079175	0.061651	-1.0642	
Deletion Peak  3 - CN values	1q43    	chr1:93485263-249250621(probes 51863:129199)   	chr1:242065222-242355431(probes 126362:126475)  	chr1:223706994-249250621(probes 114053:129199)  	0.001789	   0.001789		Actual Copy Change Given	0.0024969	-0.0029614	-0.0038779	-0.43854	-0.65975	-0.057812	0.85183	-0.056712	-0.11757	-0.03783	-0.7895	-0.89074	-0.0086614	-0.92852	-0.046312	0.0026324	-0.00055444	0.0098669	-0.55411	-0.02151	0.74255	0.001803	-0.0060554	0.00027728	-0.010508	0	-0.00041585	-0.012713	-0.0035449	0.58046	-0.017666	0.0011093	-0.014778	-0.73722	0.42224	-0.055769	0.0055974	-0.017666	-0.014287	-0.014104	0.59224	-0.0031859	-0.012063	0.037359	-0.33181	-0.0095426	-0.32901	0.47174	
Deletion Peak  4 - CN values	2q23.1  	chr2:122489933-168731067(probes 193171:218074)	chr2:148775624-149276576(probes 206577:206795)  	chr2:135695300-164375273(probes 199455:215580)  	0.011502	   0.011502		Actual Copy Change Given	0.0050454	-0.026629	0.36117	0.00069327	-0.18451	0	0.013484	0.05466	-0.01849	0.37263	-0.011611	-0.85265	-0.0022168	-0.88534	0.022058	0.0037432	0.017963	0	0.0070826	-0.027808	0.0065488	-0.33929	-0.0012473	0.00013863	0.0037465	-0.0055914	-0.0049844	0.0025413	-0.53144	0.0044411	-0.0010006	0.0038854	-0.0085766	0.010842	-0.84424	0.028903	0	0	0.021183	-0.36612	0.04812	0.23117	-0.040111	0	-0.29952	0.0013868	0.06573	-0.0011087	
Deletion Peak  5 - CN values	3p21.31 	chr3:42578769-50196417(probes 284679:288318)    	chr3:49500957-49588746(probes 288067:288087)      	chr3:49306893-49555232(probes 288003:288076)      	0.017027	   0.017213		Actual Copy Change Given	-0.38761	0.00091824	-0.057071	-0.0020784	0.90211	0.0037224	-0.00048122	0.26059	-0.13095	-0.0026322	0.6753	0.010842	0.0086135	0	0.011539	0.007319	0.0090312	-0.40196	0.52748	0.011621	0.0004385	-0.0011107	0.0037465	0.0027745	0.012097	0	-0.043195	0.51298	0.011818	0.0015255	0.00069327	0.0038854	0.47118	0.015159	-0.4023	-1.0197	-0.0060461	0.032281	0.1815	0.37397	0.015308	-0.27476	0.75611	0.0075	0.21495	-0.72862	-0.33349	-0.00027724	
Deletion Peak  6 - CN values	4q35.1  	chr4:167652787-191154276(probes 458990:469774)	chr4:185509761-186421723(probes 468228:468316)  	chr4:179868034-191154276(probes 465493:469774)  	0.037489	   0.040791		Actual Copy Change Given	0	0	-0.018216	-0.45896	-0.028901	-0.016865	-0.0021254	-0.044957	-0.10933	-0.019177	-0.80186	-0.86176	0.061222	-0.93176	-0.039258	-0.0070609	-0.63831	-0.51989	-0.0095426	0.025452	0.0018256	0.0038854	0	-0.0093288	0.017963	-0.024524	0.013074	-0.0036011	0	-0.65482	-0.023566	0.0026357	-0.015466	0	-0.4416	-0.062629	-0.034423	-0.078325	-0.67884	-0.024798	0.49113	-0.077478	-0.035214	0.0070826	0.016977	-0.0048461	0.087245	-0.034223	
Deletion Peak  7 - CN values	5q33.3  	chr5:157281809-158744166(probes 556300:557287)	chr5:158121691-158529491(probes 556888:557155)  	chr5:157546599-158577287(probes 556481:557183)  	0.017027	   0.017027		Actual Copy Change Given	-0.00041585	-0.00060681	-0.85512	0.00597	0	0.013608	0.88263	-0.039397	-0.058075	0.37784	-0.021235	0.010842	0.0026357	0.010285	0.010285	-0.021926	0.0050152	0.0114	0	-0.013737	-0.0038553	0.0041632	-0.0024938	0	0.0091705	-0.005261	0.015168	-0.0020784	0.013408	-0.67775	0	0	-0.011611	-0.014366	0.040948	0.0048579	0.011445	0.0049969	0.31594	0.12152	0.04954	0.50936	0.040853	-0.0015243	-0.0020784	-0.72782	-1.2142	-0.0059522	
Deletion Peak  8 - CN values	6p21.32 	chr6:31167499-33114170(probes 589546:589712)    	chr6:32933223-32955975(probes 589583:589588)      	chr6:30800327-32985198(probes 589372:589628)      	0.011937	   0.011937		Actual Copy Change Given	-0.0051227	-0.25351	-0.0083005	0.44105	0.45292	-0.85322	-0.0152	0.55531	-0.047324	-0.0096806	0.74024	0.015114	0.003191	-0.0042577	-0.010966	-0.0038811	-0.0089906	0.003497	-0.0009014	0.0094491	-0.011175	0.0022193	0.42974	0.0051359	-0.000251	0.0040243	0.015866	-0.00027724	-0.0036011	0.0063871	-0.014641	-0.10552	0	0.0054139	0.87195	0.00086355	0.0064317	0.010006	0.24856	-0.017254	-1.2929	0	-0.0083391	-0.12108	-0.71078	0	0.063506	-0.0053992	
Deletion Peak  9 - CN values	6q14.1  	chr6:76307902-111139036(probes 612035:631545)  	chr6:79642076-79792746(probes 613808:613867)      	chr6:76424899-140119909(probes 612085:648851)    	0.00025712	   0.001789		Actual Copy Change Given	0.0086135	0.0038373	-0.84755	0.0027745	-0.45447	0.0095641	-0.0091454	-0.37082	-0.03681	-0.0096806	-0.77744	0.015114	-0.54179	0.03031	-0.043696	-0.012385	-0.023429	0.003497	-0.54734	-0.92137	0.0023807	0.0022193	-0.28132	-0.0021819	-0.77252	0.0040243	0.015866	-0.00027724	0.0030562	-0.00069303	-0.014641	-0.10552	-0.0069195	-0.71444	-0.84808	0.010571	-0.014026	0.010006	-0.3231	-0.017254	-0.48481	0	-0.0083391	-0.12108	-0.64722	0	-0.75167	-0.039122	
Deletion Peak 10 - CN values	6q22.32 	chr6:96022438-139502638(probes 622565:648496)  	chr6:126175186-126670594(probes 639936:640181)  	chr6:76424899-140119909(probes 612085:648851)    	0.00052806	   0.066847		Actual Copy Change Given	0.0086135	0.0038373	-0.0090383	0.001061	-0.45447	0.0095641	-0.011526	-0.36703	-0.03681	-0.0096806	0.71923	0.015114	0.0080567	0.023426	-0.033127	0.014466	-0.0076101	-0.51764	0.012376	-0.92137	0.0023807	0.0022193	-0.28132	-0.0021819	-0.77252	0.0033299	-0.49715	0.010288	0.0030562	-0.00069303	-0.014641	-0.10552	-0.0069195	-0.71444	-0.84808	-1.0054	-0.0089465	0.010006	0.058081	-0.017254	-1.094	0	-0.0083391	-0.12108	-0.64722	0	-0.75167	-0.55226	
Deletion Peak 11 - CN values	6q23.3  	chr6:137860913-138410514(probes 647416:647779)	chr6:138182417-138214040(probes 647658:647668)  	chr6:76424899-140119909(probes 612085:648851)    	3.8116e-07	 0.00044539		Actual Copy Change Given	0.0086135	0.0038373	-0.0090383	0.001061	0.43159	0.0095641	-0.0022337	-0.36703	-0.03681	-0.0096806	0.71923	0.015114	0.0080567	0.023426	-0.010922	0.014466	0.014526	0.036794	0.012376	-0.92137	0.0023807	0.0022193	-0.28132	-0.0021819	-1.2929	0.0033299	-1.0477	0.010288	0.0030562	-0.00069303	0.004617	-0.10552	-0.0069195	-0.71444	-0.84808	-0.98738	-0.0089465	0.010006	-1.2929	-0.017254	-0.49214	0	-0.0083391	-0.12108	-0.64722	-1.2929	-0.75167	-1.1236	
Deletion Peak 12 - CN values	7q33    	chr7:117853365-159138663(probes 726782:748225)	chr7:134125919-134146459(probes 735553:735564)  	chr7:134129751-134167132(probes 735556:735576)  	0.035109	   0.034296		Actual Copy Change Given	-0.0041546	0.077376	0.93508	0.00041593	0.76926	-0.0053863	0	0.23303	0.026514	0	0.70101	-0.00069303	0	0.012237	0.05025	0.00027402	-0.0024938	-0.0041546	0.52704	0.0055529	-0.0095201	0.0019418	0.00027728	0.0024969	0.006109	0.0030522	0.0081959	-0.0013858	-0.0033243	-0.66226	0.63299	-0.0013858	0.46092	-0.0013858	-0.43133	-0.021928	0.52019	-0.041325	-1.0658	0.2524	0.48045	-0.0078863	-0.010493	-0.16688	0.010564	-0.0036011	-0.78387	-0.020138	
Deletion Peak 13 - CN values	8p23.2  	chr8:1-33334473(probes 748226:767934)             	chr8:2784419-4854274(probes 749013:750438)          	chr8:3520602-3544535(probes 749726:749727)          	0.17714	     0.1656		Actual Copy Change Given	0.0027745	-0.0029614	0.019083	-0.0054159	-0.66871	-0.023863	-0.91816	-0.10229	-0.34662	0.36977	-0.0060904	-0.074411	-0.0040162	-0.953	-0.031496	-0.021566	-0.060076	-0.041159	-0.0087146	-0.017384	0.0026583	0.00069327	0.0040243	-0.010784	0.058081	0.001803	-0.0089906	-0.0057225	-0.0019888	0.59386	-0.046177	-0.0030475	-0.50795	-0.024277	-0.49826	-0.091155	-0.03227	-0.025756	-0.39575	0.30617	-0.53408	-0.59536	0.10027	0.27851	-0.32693	0.001803	-0.016567	-0.58853	
Deletion Peak 14 - CN values	8q12.1  	chr8:54752291-66514953(probes 776765:783849)    	chr8:59713200-60034328(probes 779831:780065)      	chr8:59869733-59872874(probes 779949:779950)      	0.023211	   0.021103		Actual Copy Change Given	0.0027745	-0.0097327	0.019083	-0.0013858	-0.16307	-0.76545	0.01208	-0.05725	-0.31202	0.38237	-0.0060904	-0.089434	-0.0040162	-0.91432	0.016286	0.0045767	0.0038854	-0.55817	-0.0087146	0.0029133	-0.0049619	0.0073609	0.0040243	-0.010784	0.058081	0.001803	-0.010508	-0.0057225	-0.0019888	-0.66513	-0.011105	-0.0030475	-0.0041546	-0.011022	-0.40502	0.0041632	-0.03227	-0.025756	0.28042	0.28884	-0.15541	0.49493	0.10027	0.29326	-0.32693	0.001803	0.026654	0.0076392	
Deletion Peak 15 - CN values	9p21.3  	chr9:21931610-22448737(probes 843276:843611)    	chr9:21959052-21997722(probes 843298:843311)      	chr9:21550593-23517122(probes 843080:844284)      	4.6366e-22	 4.6366e-22		Actual Copy Change Given	-0.0073339	-0.0013805	-0.42429	0.0033299	0.022865	-1.2929	-0.78523	-0.089037	-0.053717	0.4996	-1.2929	-0.00041585	-0.0069195	-1.2929	-0.020456	-0.0023855	-1.0852	-0.47723	-1.0033	-0.023018	-0.0053767	0.0065262	-0.27643	-0.0030475	-0.7388	0.0038854	-0.0027707	-0.0056757	-0.0060177	0.0070826	0.012376	-0.0027707	-0.50277	-0.6691	-1.2929	-0.84963	-0.8891	0.31017	1.3393	-0.015132	-0.016841	0.75127	-0.01633	-0.010192	-1.2159	-0.69523	0.024199	-0.0059522	
Deletion Peak 16 - CN values	10q23.31	chr10:90534760-91090085(probes 950753:951152)  	chr10:90561844-90582743(probes 950781:950801)    	chr10:89531347-91450250(probes 950020:951425)    	0.00049123	 0.00049123		Actual Copy Change Given	-0.0020784	-0.00074539	-0.021373	-0.0036011	0.2321	-0.00099426	-0.89872	0.2196	0.013632	0.10521	-0.011164	0	-0.0081624	-0.0020644	0.0019418	-0.0081657	-0.0041546	-0.011887	-0.005261	0.0016642	-0.003717	0.00013863	0.0023581	-0.0015243	-0.0034627	-0.85845	0	-0.01354	-0.006505	-0.63897	-0.62188	-0.0055375	-0.49569	-0.009171	0.44029	0.95201	-0.0030032	-0.0037395	-0.7338	-0.012989	-1.2929	-0.005814	0.036896	-0.0053992	0.00083195	-0.68961	0.045282	-0.064643	
Deletion Peak 17 - CN values	12p13.2 	chr12:1-22595769(probes 1056056:1068585)         	chr12:11795940-12048611(probes 1061782:1062113)  	chr12:11712846-13986594(probes 1061737:1063403)  	0.12173	    0.12704		Actual Copy Change Given	0.0072791	0.0018893	0.90694	-0.00069303	-0.20436	-0.74843	0.84551	-0.024661	-0.043195	0.40744	-0.0075942	-0.88982	0.0044411	-0.018628	-0.0062286	0.0059667	-0.55086	0.011958	0.0024969	0.013353	0.00057716	0.00069327	0.00041593	0.0023581	0.00083195	0	0.0024969	0	0.0027745	-0.005814	-0.6264	0.161	-0.4984	0.0084743	0.010601	-0.0071958	-0.00023285	0.0181	0.012237	0.0036076	-0.53865	0.2573	-0.0070963	0.0012481	-0.33514	-0.0073339	0.54647	0.0095883	
Deletion Peak 18 - CN values	13q14.2 	chr13:48875329-49064807(probes 1148651:1148880)	chr13:48960484-49022512(probes 1148784:1148856)  	chr13:48971579-49014333(probes 1148793:1148840)  	0.017027	   0.017027		Actual Copy Change Given	-0.029721	0.0029997	-0.038014	0.0024969	0.13089	0.0171	-0.014245	-0.055499	0.055373	-0.025893	0.027357	-0.8283	0.49666	0.013213	-0.0033243	-0.00083486	-0.016154	0.010006	-0.010646	0.31241	0.0004385	-0.0014296	-0.0022168	-0.007472	0.021744	-0.84995	0.0075	-0.011887	0.5393	-0.013184	-1.1532	-0.0023553	-0.0077482	-0.0026322	0.47073	-0.012989	-0.015835	0.003191	0.0041632	-0.015329	-0.53236	-0.27906	-0.014404	0.17799	0.003191	-0.0056757	-0.33075	-0.52471	
Deletion Peak 19 - CN values	15q21.1 	chr15:44953604-45026122(probes 1246548:1246583)	chr15:45001788-45013397(probes 1246562:1246571)  	chr15:40473221-45423888(probes 1244571:1246658)  	7.2452e-05	 7.2452e-05		Actual Copy Change Given	-0.37335	0.0042496	-0.0049844	-0.00055444	-0.63491	-0.0039019	0.00498	0.50264	-0.10316	-0.020138	-0.0011087	-0.87673	0.48251	-0.010301	-0.0037395	0.0056886	-0.0049844	-0.013402	0.0030522	-0.0085766	-0.015582	-0.0037395	0.0043021	0.0013868	-0.012162	-0.84267	0.44664	0.019363	-0.54451	-0.63481	-1.2468	-0.0011087	-0.48858	0.0022193	-0.43546	-1.2929	0.0050414	-0.038087	-0.64067	0.0011093	-0.025072	0.0062481	-0.046079	-0.007472	-0.0029908	-0.72482	0	-0.0022168	
Deletion Peak 20 - CN values	16p13.13	chr16:10910547-11030197(probes 1286156:1286252)	chr16:10970628-11030197(probes 1286201:1286252)  	chr16:10910547-11010643(probes 1286156:1286234)  	0.026332	    0.02379		Actual Copy Change Given	-0.013264	-0.0065572	0.4375	0.00069327	-0.18559	-0.025643	-0.0036179	-0.053476	-0.023977	-0.94276	0.016146	-0.9156	-0.0091286	0.0058309	-0.0033243	-0.0097191	-0.017116	0.98252	-0.0091784	-0.04087	-0.86805	-0.0085766	0.0013868	0.0057313	-0.033814	0.001803	0.031718	0.0091579	0.0013868	0.014616	0.73625	-0.0049844	0.014609	-0.015674	-0.021456	-0.060211	0.0047635	-0.0069195	0.0041632	0	-0.066386	-0.44609	0.019463	-0.014233	1.0536	-0.0026322	-0.0047079	-0.54502	
Deletion Peak 21 - CN values	16q23.1 	chr16:78098006-79299841(probes 1313928:1315001)	chr16:78129058-79247026(probes 1313959:1314972)  	chr16:78583258-78586506(probes 1314466:1314467)  	0.15034	    0.15181		Actual Copy Change Given	-0.013264	-0.0023675	0.4375	-0.88109	-0.18559	-0.017501	0.89264	0.11052	-0.023977	-0.017254	-0.0037395	-0.89369	-0.0091286	-0.92657	-0.033541	-0.013956	-0.01354	-0.028765	-0.0091784	-0.022195	0.74559	-0.0085766	0.0013868	0.0057313	-0.020001	0.020763	0.51594	0.024268	-0.062615	0.00013863	-0.59419	-0.0049844	0.014609	-0.015674	-0.021456	-0.061958	-0.0087893	-0.0069195	-0.02201	0	-0.035448	0.19223	0.019463	0.0024969	0.32511	-0.0026322	-0.00041585	0.01219	
Deletion Peak 22 - CN values	17p13.1 	chr17:1-62229443(probes 1321548:1348895)         	chr17:7458583-7523773(probes 1324660:1324679)      	chr17:7469079-7473456(probes 1324665:1324666)      	0.18242	     0.1944		Actual Copy Change Given	-0.00069303	-0.0043452	-0.0019399	-0.0019382	-0.39408	-0.011183	0.8394	-0.42396	0.01447	0.37726	0.023286	-0.90411	-0.0070576	-0.96925	-0.022469	-0.0062449	0.0034687	-0.021647	-0.0036011	-0.034631	-0.0019596	-0.0067813	-0.005814	0.00097064	-0.030131	-0.0062286	-0.02151	0.016845	-0.011749	0.021884	-0.62589	-0.0027707	0.017544	-0.019726	-0.49717	-0.046583	0.015073	-0.0023553	-0.31971	-0.32007	-0.63472	-0.12043	0.032592	-0.0034627	-0.69378	0.0033299	-0.81556	-0.67591	
Deletion Peak 23 - CN values	17q24.1 	chr17:62970616-63525081(probes 1349220:1349601)	chr17:63003700-63057650(probes 1349236:1349269)  	chr17:62948574-63223948(probes 1349209:1349375)  	0.013269	   0.013752		Actual Copy Change Given	-0.00069303	-0.0044835	-0.86003	-0.0044312	0.040185	-0.01067	0.87047	0.21776	0.01447	0.37726	0.023286	-0.0071958	-0.0070576	-0.02384	-0.0018014	0.0038821	0.0034687	-0.021647	-0.0040162	-0.012438	-1.2929	-0.012703	-0.005814	-0.00018913	-0.030131	-0.86578	-0.02151	0.016845	-0.011749	0.021884	0.038489	-0.0027707	0.017544	-0.019726	-0.46116	-0.028218	0.015073	-0.0023553	-0.025335	0.017124	0.38122	-0.12043	0.019184	-0.01239	-0.0067153	-0.76569	-0.17904	-0.55557	
Deletion Peak 24 - CN values	19p13.2 	chr19:8000602-8118949(probes 1403528:1403565)    	chr19:8017820-8073463(probes 1403532:1403549)      	chr19:8042237-8053104(probes 1403541:1403542)      	0.032454	   0.032335		Actual Copy Change Given	-0.029857	-0.014142	0.00458	-0.005814	0.11284	-0.055657	-0.043483	-0.070135	-0.076763	-0.039258	0.036088	-0.035783	-0.011198	-0.074678	-0.038367	-0.020827	-0.029857	-0.049019	0.0026357	-0.99172	-0.0092442	-0.011611	-0.0089906	-0.0040162	-0.04211	-0.0029091	-0.03817	0.0063871	-0.031496	0.025671	-0.62874	-0.023703	0.0065262	-0.072808	-0.080754	-0.090361	0.028105	-0.01106	0	0.026935	0.30729	0.018803	-0.34896	-0.0077482	-0.33387	-0.015054	-0.043873	-0.043466	
Deletion Peak 25 - CN values	19q13.2 	chr19:42567946-42801342(probes 1418608:1418671)	chr19:42634499-42732964(probes 1418631:1418655)  	chr19:42598507-42805635(probes 1418617:1418672)  	0.069584	   0.072612		Actual Copy Change Given	-0.029857	-0.014142	-0.0007514	-0.005814	0.12064	-0.0088766	-0.043483	-0.081605	0.016705	0.35545	-0.70442	-0.035783	-0.019226	-0.063301	-0.028081	-0.020827	-0.022058	-0.049019	0.0026357	-0.91387	-0.0092442	-0.013953	-0.0089906	-0.0040162	-0.04211	-0.0029091	-0.027535	0.0054734	-0.031496	0.012206	0.029888	-0.023703	0.0065262	-0.75124	-0.085012	1.824	0.53635	-0.01106	0	0.026935	-0.64019	0.018803	-0.32905	-0.0077482	-0.018353	-0.018765	-0.039529	-0.04048	
Deletion Peak 26 - CN values	22q13.31	chr22:41635693-51304566(probes 1494930:1500024)	chr22:45585805-45650620(probes 1497343:1497384)  	chr22:45610374-45611450(probes 1497364:1497365)  	0.2126	    0.21964		Actual Copy Change Given	-0.0027707	-0.00074539	-0.03245	0.006109	-0.16001	-0.022013	-0.94277	-0.13587	-0.067056	-0.041404	0.0048579	-0.90964	-0.0011087	-0.042245	-0.0098185	-0.027128	-0.030813	-0.037762	-0.012162	-0.036538	0.0029359	-0.013815	-0.10832	-0.0048461	-0.034768	-0.0091286	-0.021098	0.016534	-0.0098185	0.029184	0.028481	-0.0030475	0.017684	-0.016567	-0.49669	-0.060748	0.013816	-0.051046	-0.00055444	-0.35019	-0.0073339	-0.011749	0.0059598	-0.013264	-0.03286	-0.00041585	-0.028765	-0.03681	
Deletion Peak 27 - CN values	Xq28    	chrX:57927912-155270560(probes 1523853:1563844)	chrX:150860349-150893207(probes 1562954:1562969)	chrX:150867744-150870526(probes 1562959:1562960)	0.21501	    0.21964		Actual Copy Change Given	-0.016088	0.014722	0.14424	0.87109	-0.087181	0.032116	-0.13057	0.084852	0	0.39961	1.1484	0.48113	0.022444	-1.0794	0.037924	0.010421	0.01177	0.0062481	0.071797	-0.055507	0.065393	-0.011887	-0.0037395	0.0026357	-0.044822	1.0005	0.049256	0.098997	-0.00069303	-0.025817	-0.049559	0.012516	0.022725	0.013911	-0.077559	-0.0077537	0.061897	0.012237	-0.06213	0.072253	-0.72225	0.064511	0.09329	0.014609	0.26963	-0.019863	0.97399	-0.013402	
