		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	82 (14%)	495	0.60302	1	0.12977	1	0.4869	1	0.25075	1	9.9999e-06	0.00784	0.82743	1	0.5008	1	0.084459	1	0.34022	1	0.27281	1
1q gain	89 (15%)	488	0.078149	1	0.088749	1	0.13246	1	0.62765	1	9.9999e-06	0.00784	0.52785	1	0.582	1	0.25801	1	0.82559	1	0.50606	1
2p gain	37 (6%)	540	0.46687	1	0.73396	1	0.25209	1	0.22469	1	0.0024	1	0.39171	1	0.80802	1	0.60958	1	1	1	0.53985	1
2q gain	36 (6%)	541	0.64891	1	0.91191	1	0.098119	1	0.27837	1	0.00154	0.986	0.38986	1	0.98462	1	0.6105	1	0.76623	1	0.17928	1
3p gain	58 (10%)	519	0.00062999	0.418	0.02888	1	0.66811	1	0.0267	1	9.9999e-06	0.00784	0.13035	1	0.63692	1	0.3417	1	0.81501	1	0.25474	1
3q gain	64 (11%)	513	0.00061999	0.412	0.061809	1	0.89857	1	0.063989	1	9.9999e-06	0.00784	0.065829	1	0.71441	1	0.20302	1	0.51643	1	0.15034	1
4p gain	36 (6%)	541	0.24148	1	0.61464	1	0.48558	1	0.52149	1	0.00065999	0.436	0.4576	1	0.75677	1	0.55003	1	0.61429	1	0.79178	1
4q gain	33 (6%)	544	0.30852	1	0.31772	1	0.49604	1	0.54092	1	0.0055199	1	0.26562	1	0.9259	1	0.68399	1	0.36371	1	0.65689	1
5p gain	49 (8%)	528	0.11395	1	0.15656	1	0.17773	1	0.34465	1	5e-05	0.0351	0.23295	1	0.28032	1	0.5308	1	0.12807	1	0.22747	1
5q gain	41 (7%)	536	0.14051	1	0.23428	1	0.11631	1	0.054939	1	0.00014	0.0953	0.11684	1	0.39018	1	0.29621	1	0.16919	1	0.40508	1
6p gain	24 (4%)	553	0.01212	1	0.11709	1	0.87525	1	0.16152	1	0.15809	1	0.082449	1	0.81116	1	0.58307	1	1	1	1	1
6q gain	23 (4%)	554	0.00141	0.908	0.03623	1	0.78696	1	0.10359	1	0.02492	1	0.0057499	1	0.93115	1	0.52876	1	0.81321	1	1	1
7p gain	468 (81%)	109	9.9999e-06	0.00784	9.9999e-06	0.00784	0.00029	0.196	9.9999e-06	0.00784	9.9999e-06	0.00784	9.9999e-06	0.00784	0.00189	1	0.00285	1	0.01527	1	6.9999e-05	0.0486
7q gain	474 (82%)	103	2e-05	0.0144	9.9999e-06	0.00784	0.00146	0.936	0.00017	0.115	9.9999e-06	0.00784	4e-05	0.0282	0.10492	1	0.04467	1	0.054459	1	0.00143	0.919
8p gain	52 (9%)	525	2e-05	0.0144	0.00064999	0.43	0.063659	1	0.55894	1	9.9999e-06	0.00784	0.00409	1	0.43627	1	0.75533	1	0.13946	1	0.67569	1
8q gain	59 (10%)	518	9.9999e-06	0.00784	9.9999e-06	0.00784	0.04018	1	0.45463	1	9.9999e-06	0.00784	0.00048	0.322	0.43406	1	0.75768	1	0.12278	1	0.51089	1
9p gain	47 (8%)	530	0.00359	1	0.03132	1	0.70213	1	0.43224	1	2e-05	0.0144	0.54548	1	0.80003	1	0.3668	1	0.42865	1	0.1135	1
9q gain	71 (12%)	506	0.080219	1	0.070929	1	0.57764	1	0.16719	1	3e-05	0.0213	0.19768	1	0.31785	1	0.38652	1	0.6703	1	0.077379	1
10p gain	13 (2%)	564	0.00091999	0.603	0.00011	0.0756	0.11693	1	0.058609	1	0.00103	0.669	0.00036	0.242	0.30775	1	0.56124	1	NA	NA	NA	NA
10q gain	3 (1%)	574	0.55543	1	1	1	0.052779	1	0.79408	1	0.19571	1	0.18959	1	NA	NA	NA	NA	NA	NA	NA	NA
11p gain	17 (3%)	560	0.90648	1	0.88121	1	0.24732	1	0.94483	1	0.19694	1	0.085699	1	0.86811	1	0.52886	1	0.69691	1	1	1
11q gain	14 (2%)	563	0.18728	1	0.064669	1	0.2159	1	0.36021	1	0.15032	1	0.00056999	0.38	0.86849	1	1	1	1	1	1	1
12p gain	60 (10%)	517	0.67002	1	0.7929	1	0.64107	1	0.16449	1	7.9999e-05	0.0551	0.89981	1	0.23568	1	0.66209	1	0.00392	1	0.075179	1
12q gain	49 (8%)	528	0.51748	1	0.95508	1	0.53788	1	0.0098599	1	0.0016	1	0.59066	1	0.31229	1	0.29979	1	0.02206	1	0.12421	1
13q gain	10 (2%)	567	0.053059	1	0.49388	1	0.1791	1	0.82614	1	0.056759	1	1	1	0.89345	1	1	1	0.42634	1	1	1
14q gain	22 (4%)	555	0.42941	1	0.78174	1	0.01031	1	0.80585	1	0.39012	1	0.50826	1	0.47258	1	0.8571	1	0.42516	1	0.32574	1
15q gain	24 (4%)	553	0.060859	1	0.10816	1	0.56624	1	0.1331	1	5.9999e-05	0.0419	0.27901	1	0.53421	1	0.33909	1	0.03428	1	0.38666	1
16p gain	38 (7%)	539	0.0082599	1	0.065909	1	0.41247	1	0.27275	1	9.9999e-06	0.00784	0.03116	1	0.61196	1	0.47416	1	1	1	1	1
16q gain	37 (6%)	540	0.01818	1	0.0058099	1	0.35758	1	0.066379	1	5.9999e-05	0.0419	0.02596	1	0.75785	1	0.41784	1	0.41883	1	0.73622	1
17p gain	48 (8%)	529	0.00048	0.322	0.02045	1	0.078319	1	0.04002	1	5e-05	0.0351	0.03275	1	0.149	1	0.23843	1	0.33644	1	0.38995	1
17q gain	60 (10%)	517	0.00112	0.726	0.04511	1	0.12905	1	0.070339	1	9.9999e-06	0.00784	0.03787	1	0.087969	1	0.10797	1	0.94514	1	0.61473	1
18p gain	58 (10%)	519	9.9999e-06	0.00784	0.00047	0.315	0.157	1	0.36479	1	9.9999e-06	0.00784	0.00485	1	0.42164	1	0.14936	1	0.01826	1	0.096449	1
18q gain	58 (10%)	519	9.9999e-06	0.00784	0.00071999	0.475	0.15698	1	0.43082	1	9.9999e-06	0.00784	0.0055699	1	0.69217	1	0.47907	1	0.01844	1	0.11422	1
19p gain	226 (39%)	351	9.9999e-06	0.00784	2e-05	0.0144	0.090369	1	3e-04	0.202	9.9999e-06	0.00784	9.9999e-06	0.00784	0.0091599	1	9.9999e-06	0.00784	0.18838	1	0.65525	1
19q gain	199 (34%)	378	9.9999e-06	0.00784	9.9999e-06	0.00784	0.14339	1	0.0033	1	9.9999e-06	0.00784	9.9999e-06	0.00784	0.04613	1	0.00099999	0.651	0.062869	1	0.34284	1
20p gain	222 (38%)	355	9.9999e-06	0.00784	9.9999e-06	0.00784	0.00432	1	9.9999e-06	0.00784	2e-05	0.0144	8.9999e-05	0.0619	0.053929	1	0.00185	1	0.79382	1	0.11831	1
20q gain	220 (38%)	357	9.9999e-06	0.00784	9.9999e-06	0.00784	0.0032	1	9.9999e-06	0.00784	9.9999e-06	0.00784	6.9999e-05	0.0486	0.03433	1	0.00089999	0.59	0.7952	1	0.11885	1
21q gain	64 (11%)	513	0.00121	0.783	0.0073599	1	0.01083	1	0.00422	1	0.00019	0.129	0.00182	1	0.31506	1	0.02606	1	0.0178	1	0.33388	1
22q gain	34 (6%)	543	2e-05	0.0144	0.00329	1	0.46863	1	0.21849	1	6.9999e-05	0.0486	0.14323	1	0.21406	1	0.03529	1	0.24594	1	0.19412	1
xq gain	16 (3%)	561	0.25495	1	0.94719	1	0.98471	1	0.36157	1	0.95182	1	0.71846	1	0.79025	1	1	1	0.03982	1	0.26317	1
1p loss	16 (3%)	561	0.63609	1	0.82698	1	0.94052	1	0.19766	1	0.02176	1	0.58208	1	0.33884	1	0.18086	1	0.11091	1	0.018	1
1q loss	15 (3%)	562	0.83057	1	0.97766	1	0.85726	1	0.36346	1	0.13418	1	1	1	0.33914	1	0.20836	1	0.51464	1	0.083909	1
2p loss	32 (6%)	545	0.03073	1	0.02821	1	0.26317	1	0.77145	1	9.9999e-06	0.00784	0.61817	1	1	1	0.42807	1	0.24438	1	0.22621	1
2q loss	32 (6%)	545	0.02985	1	0.02838	1	0.26184	1	0.76962	1	9.9999e-06	0.00784	0.61559	1	0.89643	1	0.24899	1	0.082319	1	0.073259	1
3p loss	40 (7%)	537	0.91039	1	0.78848	1	0.7181	1	0.15109	1	5.9999e-05	0.0419	0.20228	1	0.23561	1	0.90085	1	0.63753	1	0.231	1
3q loss	34 (6%)	543	0.22909	1	0.1291	1	0.51351	1	0.67773	1	9.9999e-06	0.00784	0.03437	1	0.7846	1	0.32078	1	0.88848	1	0.18034	1
4p loss	55 (10%)	522	0.079599	1	0.00323	1	0.03287	1	0.22634	1	0.00274	1	0.00199	1	0.29437	1	0.12239	1	0.7443	1	1	1
4q loss	56 (10%)	521	0.00097999	0.639	0.00057999	0.386	0.01886	1	0.15352	1	0.00019	0.129	0.00091999	0.603	0.73236	1	0.479	1	0.56112	1	1	1
5p loss	43 (7%)	534	3e-05	0.0213	2e-05	0.0144	0.00193	1	0.096689	1	5.9999e-05	0.0419	3e-05	0.0213	0.93954	1	0.54609	1	0.34302	1	0.051639	1
5q loss	44 (8%)	533	4e-05	0.0282	4e-05	0.0282	0.00085999	0.565	0.18779	1	5e-05	0.0351	9.9999e-06	0.00784	0.94346	1	0.625	1	0.22341	1	0.04303	1
6p loss	86 (15%)	491	0.5693	1	0.33184	1	0.7726	1	0.70557	1	9.9999e-06	0.00784	0.57227	1	0.79455	1	0.30035	1	0.86863	1	0.59457	1
6q loss	125 (22%)	452	0.93913	1	0.57916	1	0.56307	1	0.94107	1	9.9999e-06	0.00784	0.65313	1	0.96941	1	0.64691	1	0.4955	1	0.29347	1
7p loss	8 (1%)	569	0.02233	1	0.03441	1	0.45821	1	0.04222	1	0.01581	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
7q loss	6 (1%)	571	0.10058	1	0.29926	1	0.94162	1	0.12543	1	0.098699	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
8p loss	58 (10%)	519	0.544	1	0.4411	1	0.18067	1	0.78043	1	0.26076	1	0.64985	1	0.90629	1	0.95013	1	0.5749	1	0.39202	1
8q loss	42 (7%)	535	0.62114	1	0.15238	1	0.02241	1	0.80816	1	0.10329	1	0.13664	1	0.85774	1	0.65546	1	0.46142	1	0.14587	1
9p loss	202 (35%)	375	0.0073999	1	0.10823	1	0.55105	1	0.48433	1	0.59904	1	0.47973	1	0.6206	1	0.04677	1	0.02219	1	0.0087299	1
9q loss	94 (16%)	483	0.37022	1	0.098499	1	0.073059	1	0.27558	1	0.54803	1	0.57396	1	0.36178	1	0.11656	1	0.75076	1	0.18083	1
10p loss	483 (84%)	94	9.9999e-06	0.00784	9.9999e-06	0.00784	0.01041	1	6.9999e-05	0.0486	9.9999e-06	0.00784	9.9999e-06	0.00784	0.00232	1	0.02743	1	0.22314	1	0.01279	1
10q loss	494 (86%)	83	9.9999e-06	0.00784	9.9999e-06	0.00784	0.0061199	1	0.00011	0.0756	9.9999e-06	0.00784	5e-05	0.0351	6.9999e-05	0.0486	0.00429	1	0.26019	1	0.02178	1
11p loss	99 (17%)	478	9.9999e-06	0.00784	9.9999e-06	0.00784	0.83076	1	0.01405	1	9.9999e-06	0.00784	0.00283	1	0.72937	1	0.15865	1	0.093019	1	0.086689	1
11q loss	93 (16%)	484	2e-05	0.0144	0.00014	0.0953	0.93414	1	0.060169	1	9.9999e-06	0.00784	0.41582	1	0.93632	1	0.56795	1	0.34315	1	0.53628	1
12p loss	58 (10%)	519	0.096079	1	0.095379	1	0.55904	1	0.83194	1	0.0061599	1	0.5994	1	0.15445	1	0.058109	1	1	1	0.66183	1
12q loss	57 (10%)	520	0.14007	1	0.098309	1	0.44385	1	0.65335	1	3e-04	0.202	0.55258	1	0.18162	1	0.39073	1	1	1	0.66306	1
13q loss	186 (32%)	391	2e-05	0.0144	0.00137	0.884	0.75102	1	0.58832	1	9.9999e-06	0.00784	0.01104	1	0.59409	1	0.01697	1	0.04922	1	0.40021	1
14q loss	146 (25%)	431	9.9999e-06	0.00784	0.00016	0.109	0.51161	1	0.53934	1	9.9999e-06	0.00784	0.02481	1	0.81332	1	0.092159	1	0.16594	1	0.70134	1
15q loss	106 (18%)	471	2e-05	0.0144	9.9999e-06	0.00784	0.00385	1	0.00382	1	9.9999e-06	0.00784	0.075469	1	0.03212	1	0.01154	1	0.00356	1	0.02344	1
16p loss	63 (11%)	514	0.28681	1	0.85172	1	0.66147	1	0.73464	1	0.03426	1	0.059279	1	0.45091	1	0.18998	1	0.56473	1	0.64943	1
16q loss	83 (14%)	494	0.060309	1	0.42751	1	0.46725	1	0.89774	1	0.01281	1	0.36711	1	0.04892	1	0.01829	1	0.66213	1	0.59951	1
17p loss	65 (11%)	512	0.01941	1	0.02022	1	0.65	1	0.58108	1	9.9999e-06	0.00784	0.12874	1	0.21376	1	0.35112	1	0.29968	1	0.70426	1
17q loss	41 (7%)	536	0.0050399	1	0.060219	1	0.21203	1	0.04716	1	9.9999e-06	0.00784	0.03626	1	0.68694	1	0.48019	1	0.1467	1	0.10677	1
18p loss	71 (12%)	506	0.04732	1	0.03183	1	0.36088	1	0.22111	1	9.9999e-06	0.00784	0.50631	1	0.063749	1	0.0058999	1	0.13409	1	0.59749	1
18q loss	62 (11%)	515	0.14689	1	0.0073199	1	0.62045	1	0.23927	1	0.00013	0.0888	0.47903	1	0.0091599	1	0.00351	1	0.41762	1	0.1204	1
19p loss	27 (5%)	550	0.00061999	0.412	0.00091999	0.603	0.058409	1	0.43469	1	0.0134	1	0.00012	0.0822	0.01977	1	0.01085	1	0.85277	1	0.66847	1
19q loss	35 (6%)	542	0.00055999	0.374	0.00497	1	0.41315	1	0.15205	1	0.00106	0.688	0.00078999	0.521	0.080149	1	0.33707	1	0.93013	1	0.51328	1
20p loss	19 (3%)	558	0.00013	0.0888	5e-05	0.0351	0.03663	1	0.093699	1	9.9999e-06	0.00784	0.30816	1	0.41317	1	0.45575	1	0.01043	1	0.00206	1
20q loss	17 (3%)	560	0.00145	0.931	0.00012	0.0822	0.36545	1	0.26589	1	9.9999e-06	0.00784	0.30917	1	0.41481	1	0.45878	1	0.03947	1	0.01171	1
21q loss	42 (7%)	535	0.02149	1	0.00134	0.866	0.053109	1	0.26322	1	0.00079999	0.526	0.00177	1	0.01214	1	0.083749	1	0.82714	1	1	1
22q loss	181 (31%)	396	0.65061	1	0.56167	1	0.19772	1	0.87549	1	9.9999e-06	0.00784	0.073609	1	0.90916	1	0.13537	1	0.20166	1	0.092469	1
xq loss	106 (18%)	471	0.01887	1	0.01566	1	0.11209	1	0.10631	1	9.9999e-06	0.00784	0.0058699	1	0.90252	1	0.68255	1	0.41449	1	0.96119	1
