[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oTGBM-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/11929789/GBM-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/11550724/transformed.cor.cli.txt"

nPatients in clinical file=599, in cluster file=577, common to both=577
[1]  71 577
[1] "AMP PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            92                            485 
  AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE 
                            92                            485 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                          160                           417 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                          160                           417 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         99                         478 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                         99                         478 
[1] "AMP PEAK  4(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           49                           528 
  AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE 
                           49                           528 
[1] "AMP PEAK  5(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE 
                           111                            466 
  AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE 
                           111                            466 
[1] "AMP PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           48                           529 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           48                           529 
[1] "AMP PEAK  7(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                        108                         469 
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                        108                         469 
[1] "AMP PEAK  8(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          507                            70 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                          507                            70 
[1] "AMP PEAK  9(7Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE 
                           464                            113 
  AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE 
                           464                            113 
[1] "AMP PEAK 10(7Q21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE 
                          480                            97 
  AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE 
                          480                            97 
[1] "AMP PEAK 11(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          473                           104 
  AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE 
                          473                           104 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            70                            507 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            70                            507 
[1] "AMP PEAK 13(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE 
                          31                          546 
  AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE 
                          31                          546 
[1] "AMP PEAK 14(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE 
                             84                             493 
  AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE 
                             84                             493 
[1] "AMP PEAK 15(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE 
                           134                            443 
  AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE 
                           134                            443 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          93                          484 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                          93                          484 
[1] "AMP PEAK 17(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE 
                          32                          545 
  AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE 
                          32                          545 
[1] "AMP PEAK 18(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          30                          547 
  AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE 
                          30                          547 
[1] "AMP PEAK 19(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE 
                             36                             541 
  AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE 
                             36                             541 
[1] "AMP PEAK 20(17P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE 
                            51                            526 
  AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE 
                            51                            526 
[1] "AMP PEAK 21(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            84                            493 
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            84                            493 
[1] "AMP PEAK 22(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE 
                           244                            333 
  AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE 
                           244                            333 
[1] "AMP PEAK 23(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE 
                           249                            328 
  AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE 
                           249                            328 
[1] "AMP PEAK 24(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                         216                          361 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                         216                          361 
[1] "AMP PEAK 25(21Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE 
                            70                            507 
  AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE 
                            70                            507 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           100                            477 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           100                            477 
[1] "DEL PEAK  2(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           136                            441 
  DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE 
                           136                            441 
[1] "DEL PEAK  3(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           61                           516 
  DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE 
                           61                           516 
[1] "DEL PEAK  4(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           48                           529 
  DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE 
                           48                           529 
[1] "DEL PEAK  5(1Q42.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            51                            526 
  DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE 
                            51                            526 
[1] "DEL PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         35                         542 
  DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE 
                         35                         542 
[1] "DEL PEAK  7(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           47                           530 
  DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE 
                           47                           530 
[1] "DEL PEAK  8(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           55                           522 
  DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE 
                           55                           522 
[1] "DEL PEAK  9(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE 
                           53                           524 
  DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE 
                           53                           524 
[1] "DEL PEAK 10(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            56                            521 
  DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE 
                            56                            521 
[1] "DEL PEAK 11(3Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE 
                           58                           519 
  DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE 
                           58                           519 
[1] "DEL PEAK 12(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE 
                         65                         512 
  DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE 
                         65                         512 
[1] "DEL PEAK 13(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE 
                           78                           499 
  DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE 
                           78                           499 
[1] "DEL PEAK 14(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE 
                           93                           484 
  DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE 
                           93                           484 
[1] "DEL PEAK 15(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE 
                         70                         507 
  DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE 
                         70                         507 
[1] "DEL PEAK 16(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           158                            419 
  DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE 
                           158                            419 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        179                         398 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                        179                         398 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           66                           511 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                           66                           511 
[1] "DEL PEAK 19(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                          421                           156 
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                          421                           156 
[1] "DEL PEAK 20(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE 
                           79                           498 
  DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE 
                           79                           498 
[1] "DEL PEAK 21(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           470                            107 
  DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE 
                           470                            107 
[1] "DEL PEAK 22(10P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         471                          106 
  DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE 
                         471                          106 
[1] "DEL PEAK 23(10P11.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            476                             101 
  DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE 
                            476                             101 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            514                              63 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            514                              63 
[1] "DEL PEAK 25(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           515                             62 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           515                             62 
[1] "DEL PEAK 26(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           129                            448 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           129                            448 
[1] "DEL PEAK 27(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           105                            472 
  DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE 
                           105                            472 
[1] "DEL PEAK 28(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                            96                            481 
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                            96                            481 
[1] "DEL PEAK 29(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            72                            505 
  DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE 
                            72                            505 
[1] "DEL PEAK 30(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          77                          500 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          77                          500 
[1] "DEL PEAK 31(12Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          79                          498 
  DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE 
                          79                          498 
[1] "DEL PEAK 32(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           241                            336 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           241                            336 
[1] "DEL PEAK 33(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           230                            347 
  DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE 
                           230                            347 
[1] "DEL PEAK 34(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           178                            399 
  DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE 
                           178                            399 
[1] "DEL PEAK 35(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           173                            404 
  DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE 
                           173                            404 
[1] "DEL PEAK 36(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         154                          423 
  DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE 
                         154                          423 
[1] "DEL PEAK 37(16P12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            92                            485 
  DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE 
                            92                            485 
[1] "DEL PEAK 38(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           101                            476 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           101                            476 
[1] "DEL PEAK 39(17P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE 
                            88                            489 
  DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE 
                            88                            489 
[1] "DEL PEAK 40(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                            98                            479 
  DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE 
                            98                            479 
[1] "DEL PEAK 41(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            72                            505 
  DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE 
                            72                            505 
[1] "DEL PEAK 42(18Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE 
                            82                            495 
  DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE 
                            82                            495 
[1] "DEL PEAK 43(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                             99                             478 
  DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE 
                             99                             478 
[1] "DEL PEAK 44(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE 
                            56                            521 
  DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE 
                            56                            521 
[1] "DEL PEAK 45(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            212                             365 
  DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE 
                            212                             365 
[1] "DEL PEAK 46(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          118                           459 
  DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE 
                          118                           459 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"

Input Data has 10 rows and 577 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 577 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       24     20     22     17
  AMP PEAK  1(1P36.21) WILD-TYPE    123     76    130     96
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           24                            123
  CLUS_2                           20                             76
  CLUS_3                           22                            130
  CLUS_4                           17                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       25     15     12     31
  AMP PEAK  1(1P36.21) WILD-TYPE    123     87     88    127
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           15                             87
  CLUS_3                           12                             88
  CLUS_4                           31                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED       23     37     12     17
  AMP PEAK  1(1P36.21) WILD-TYPE    133    146     75    103
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           23                            133
  CLUS_2                           37                            146
  CLUS_3                           12                             75
  CLUS_4                           17                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       46     15     28
  AMP PEAK  1(1P36.21) WILD-TYPE    247    109    101
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           46                            247
  CLUS_2                           15                            109
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       52     22     18
  AMP PEAK  1(1P36.21) WILD-TYPE    110    196    179
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           52                            110
  CLUS_2                           22                            196
  CLUS_3                           18                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       14     20     10
  AMP PEAK  1(1P36.21) WILD-TYPE     75     88     68
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           14                             75
  CLUS_2                           20                             88
  CLUS_3                           10                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P36.21) MUTATED        4      7     13      6
  AMP PEAK  1(1P36.21) WILD-TYPE     50     51     31     39
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                            7                             51
  CLUS_3                           13                             31
  CLUS_4                            6                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED       10      7     13
  AMP PEAK  1(1P36.21) WILD-TYPE     59     69     43
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           10                             59
  CLUS_2                            7                             69
  CLUS_3                           13                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED        4     20      4
  AMP PEAK  1(1P36.21) WILD-TYPE     40     47     32
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           20                             47
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P36.21) MUTATED        2     24      2
  AMP PEAK  1(1P36.21) WILD-TYPE     28     68     23
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P36.21) MUTATED AMP PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           24                             68
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       38     30     42     30
  AMP PEAK  2(1Q32.1) WILD-TYPE    109     66    110     83
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          38                           109
  CLUS_2                          30                            66
  CLUS_3                          42                           110
  CLUS_4                          30                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       37     22     25     56
  AMP PEAK  2(1Q32.1) WILD-TYPE    111     80     75    102
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          37                           111
  CLUS_2                          22                            80
  CLUS_3                          25                            75
  CLUS_4                          56                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       35     53     28     35
  AMP PEAK  2(1Q32.1) WILD-TYPE    121    130     59     85
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          35                           121
  CLUS_2                          53                           130
  CLUS_3                          28                            59
  CLUS_4                          35                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       85     26     40
  AMP PEAK  2(1Q32.1) WILD-TYPE    208     98     89
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          85                           208
  CLUS_2                          26                            98
  CLUS_3                          40                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       75     47     38
  AMP PEAK  2(1Q32.1) WILD-TYPE     87    171    159
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          75                            87
  CLUS_2                          47                           171
  CLUS_3                          38                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       21     31     27
  AMP PEAK  2(1Q32.1) WILD-TYPE     68     77     51
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          21                            68
  CLUS_2                          31                            77
  CLUS_3                          27                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       14     17     14     12
  AMP PEAK  2(1Q32.1) WILD-TYPE     40     41     30     33
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          14                            40
  CLUS_2                          17                            41
  CLUS_3                          14                            30
  CLUS_4                          12                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       20     19     18
  AMP PEAK  2(1Q32.1) WILD-TYPE     49     57     38
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          20                            49
  CLUS_2                          19                            57
  CLUS_3                          18                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        9     20     10
  AMP PEAK  2(1Q32.1) WILD-TYPE     35     47     26
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          20                            47
  CLUS_3                          10                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        4     30      5
  AMP PEAK  2(1Q32.1) WILD-TYPE     26     62     20
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          30                            62
  CLUS_3                           5                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       22     25     24     19
  AMP PEAK  3(1Q44) WILD-TYPE    125     71    128     94
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        22                         125
  CLUS_2                        25                          71
  CLUS_3                        24                         128
  CLUS_4                        19                          94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       25     21     14     30
  AMP PEAK  3(1Q44) WILD-TYPE    123     81     86    128
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                         123
  CLUS_2                        21                          81
  CLUS_3                        14                          86
  CLUS_4                        30                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       22     35     15     23
  AMP PEAK  3(1Q44) WILD-TYPE    134    148     72     97
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        22                         134
  CLUS_2                        35                         148
  CLUS_3                        15                          72
  CLUS_4                        23                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       54     16     25
  AMP PEAK  3(1Q44) WILD-TYPE    239    108    104
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        54                         239
  CLUS_2                        16                         108
  CLUS_3                        25                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       57     22     20
  AMP PEAK  3(1Q44) WILD-TYPE    105    196    177
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        57                         105
  CLUS_2                        22                         196
  CLUS_3                        20                         177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       13     18     16
  AMP PEAK  3(1Q44) WILD-TYPE     76     90     62
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        13                          76
  CLUS_2                        18                          90
  CLUS_3                        16                          62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED        5      9     10      8
  AMP PEAK  3(1Q44) WILD-TYPE     49     49     34     37
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                         9                          49
  CLUS_3                        10                          34
  CLUS_4                         8                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       12      7     13
  AMP PEAK  3(1Q44) WILD-TYPE     57     69     43
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        12                          57
  CLUS_2                         7                          69
  CLUS_3                        13                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED        7     12      7
  AMP PEAK  3(1Q44) WILD-TYPE     37     55     29
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         7                          37
  CLUS_2                        12                          55
  CLUS_3                         7                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED        4     19      3
  AMP PEAK  3(1Q44) WILD-TYPE     26     73     22
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                        19                          73
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       11     12      8     14
  AMP PEAK  4(2P24.3) WILD-TYPE    136     84    144     99
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                          12                            84
  CLUS_3                           8                           144
  CLUS_4                          14                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED       11     17      4     13
  AMP PEAK  4(2P24.3) WILD-TYPE    137     85     96    145
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          11                           137
  CLUS_2                          17                            85
  CLUS_3                           4                            96
  CLUS_4                          13                           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED        9     19      8     12
  AMP PEAK  4(2P24.3) WILD-TYPE    147    164     79    108
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           9                           147
  CLUS_2                          19                           164
  CLUS_3                           8                            79
  CLUS_4                          12                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       27     10     11
  AMP PEAK  4(2P24.3) WILD-TYPE    266    114    118
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          27                           266
  CLUS_2                          10                           114
  CLUS_3                          11                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED       24      9     16
  AMP PEAK  4(2P24.3) WILD-TYPE    138    209    181
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                          24                           138
  CLUS_2                           9                           209
  CLUS_3                          16                           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        5      7     14
  AMP PEAK  4(2P24.3) WILD-TYPE     84    101     64
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                           7                           101
  CLUS_3                          14                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P24.3) MUTATED        4     10      5      4
  AMP PEAK  4(2P24.3) WILD-TYPE     50     48     39     41
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                          10                            48
  CLUS_3                           5                            39
  CLUS_4                           4                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        5     11      7
  AMP PEAK  4(2P24.3) WILD-TYPE     64     65     49
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           5                            64
  CLUS_2                          11                            65
  CLUS_3                           7                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        5      6      4
  AMP PEAK  4(2P24.3) WILD-TYPE     39     61     32
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           6                            61
  CLUS_3                           4                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P24.3) MUTATED        3     11      1
  AMP PEAK  4(2P24.3) WILD-TYPE     27     81     24
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P24.3) MUTATED AMP PEAK  4(2P24.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          11                            81
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED       27     28     19     27
  AMP PEAK  5(3Q26.33) WILD-TYPE    120     68    133     86
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           27                            120
  CLUS_2                           28                             68
  CLUS_3                           19                            133
  CLUS_4                           27                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED       25     25     15     36
  AMP PEAK  5(3Q26.33) WILD-TYPE    123     77     85    122
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           25                            123
  CLUS_2                           25                             77
  CLUS_3                           15                             85
  CLUS_4                           36                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED       29     42     19     19
  AMP PEAK  5(3Q26.33) WILD-TYPE    127    141     68    101
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           29                            127
  CLUS_2                           42                            141
  CLUS_3                           19                             68
  CLUS_4                           19                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       59     17     33
  AMP PEAK  5(3Q26.33) WILD-TYPE    234    107     96
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           59                            234
  CLUS_2                           17                            107
  CLUS_3                           33                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       61     24     26
  AMP PEAK  5(3Q26.33) WILD-TYPE    101    194    171
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           61                            101
  CLUS_2                           24                            194
  CLUS_3                           26                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       10     22     19
  AMP PEAK  5(3Q26.33) WILD-TYPE     79     86     59
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           10                             79
  CLUS_2                           22                             86
  CLUS_3                           19                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.33) MUTATED        5     10      9     13
  AMP PEAK  5(3Q26.33) WILD-TYPE     49     48     35     32
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                            5                             49
  CLUS_2                           10                             48
  CLUS_3                            9                             35
  CLUS_4                           13                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       15     12     10
  AMP PEAK  5(3Q26.33) WILD-TYPE     54     64     46
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                           12                             64
  CLUS_3                           10                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED       14     15      6
  AMP PEAK  5(3Q26.33) WILD-TYPE     30     52     30
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           15                             52
  CLUS_3                            6                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.33) MUTATED        9     21      5
  AMP PEAK  5(3Q26.33) WILD-TYPE     21     71     20
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.33) MUTATED AMP PEAK  5(3Q26.33) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           21                             71
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       11     12     13      6
  AMP PEAK  6(4P16.3) WILD-TYPE    136     84    139    107
D6V1, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                          12                            84
  CLUS_3                          13                           139
  CLUS_4                           6                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       10     10     10     12
  AMP PEAK  6(4P16.3) WILD-TYPE    138     92     90    146
D6V2, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          10                            92
  CLUS_3                          10                            90
  CLUS_4                          12                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED       14     18      6      9
  AMP PEAK  6(4P16.3) WILD-TYPE    142    165     81    111
D6V3, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          14                           142
  CLUS_2                          18                           165
  CLUS_3                           6                            81
  CLUS_4                           9                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED       19     11     17
  AMP PEAK  6(4P16.3) WILD-TYPE    274    113    112
D6V4, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          19                           274
  CLUS_2                          11                           113
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED       19     16     13
  AMP PEAK  6(4P16.3) WILD-TYPE    143    202    184
D6V5, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          19                           143
  CLUS_2                          16                           202
  CLUS_3                          13                           184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED       10     14      6
  AMP PEAK  6(4P16.3) WILD-TYPE     79     94     72
D6V6, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          10                            79
  CLUS_2                          14                            94
  CLUS_3                           6                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4P16.3) MUTATED        5      6      2      5
  AMP PEAK  6(4P16.3) WILD-TYPE     49     52     42     40
D6V7, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           6                            52
  CLUS_3                           2                            42
  CLUS_4                           5                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        8      7      3
  AMP PEAK  6(4P16.3) WILD-TYPE     61     69     53
D6V8, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           8                            61
  CLUS_2                           7                            69
  CLUS_3                           3                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        5      7      4
  AMP PEAK  6(4P16.3) WILD-TYPE     39     60     32
D6V9, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                           7                            60
  CLUS_3                           4                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4P16.3) MUTATED        3     10      3
  AMP PEAK  6(4P16.3) WILD-TYPE     27     82     22
D6V10, multiclass
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          10                            82
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       22     32     20     25
  AMP PEAK  7(4Q12) WILD-TYPE    125     64    132     88
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        22                         125
  CLUS_2                        32                          64
  CLUS_3                        20                         132
  CLUS_4                        25                          88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       18     31     16     34
  AMP PEAK  7(4Q12) WILD-TYPE    130     71     84    124
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        18                         130
  CLUS_2                        31                          71
  CLUS_3                        16                          84
  CLUS_4                        34                         124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       24     39     18     23
  AMP PEAK  7(4Q12) WILD-TYPE    132    144     69     97
D7V3, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        24                         132
  CLUS_2                        39                         144
  CLUS_3                        18                          69
  CLUS_4                        23                          97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       60     19     25
  AMP PEAK  7(4Q12) WILD-TYPE    233    105    104
D7V4, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        60                         233
  CLUS_2                        19                         105
  CLUS_3                        25                         104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       50     26     32
  AMP PEAK  7(4Q12) WILD-TYPE    112    192    165
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        50                         112
  CLUS_2                        26                         192
  CLUS_3                        32                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       10     18     23
  AMP PEAK  7(4Q12) WILD-TYPE     79     90     55
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        10                          79
  CLUS_2                        18                          90
  CLUS_3                        23                          55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED       12     13      5      8
  AMP PEAK  7(4Q12) WILD-TYPE     42     45     39     37
D7V7, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        12                          42
  CLUS_2                        13                          45
  CLUS_3                         5                          39
  CLUS_4                         8                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       14     16      8
  AMP PEAK  7(4Q12) WILD-TYPE     55     60     48
D7V8, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        14                          55
  CLUS_2                        16                          60
  CLUS_3                         8                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED       13     11      5
  AMP PEAK  7(4Q12) WILD-TYPE     31     56     31
D7V9, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                        13                          31
  CLUS_2                        11                          56
  CLUS_3                         5                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        8     18      3
  AMP PEAK  7(4Q12) WILD-TYPE     22     74     22
D7V10, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         8                          22
  CLUS_2                        18                          74
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      139     68    147     89
  AMP PEAK  8(7P11.2) WILD-TYPE      8     28      5     24
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         139                             8
  CLUS_2                          68                            28
  CLUS_3                         147                             5
  CLUS_4                          89                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      136     60     99    148
  AMP PEAK  8(7P11.2) WILD-TYPE     12     42      1     10
D8V2, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         136                            12
  CLUS_2                          60                            42
  CLUS_3                          99                             1
  CLUS_4                         148                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED      151    146     73    110
  AMP PEAK  8(7P11.2) WILD-TYPE      5     37     14     10
D8V3, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         151                             5
  CLUS_2                         146                            37
  CLUS_3                          73                            14
  CLUS_4                         110                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED      234    120    126
  AMP PEAK  8(7P11.2) WILD-TYPE     59      4      3
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         234                            59
  CLUS_2                         120                             4
  CLUS_3                         126                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED      153    217    137
  AMP PEAK  8(7P11.2) WILD-TYPE      9      1     60
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                         153                             9
  CLUS_2                         217                             1
  CLUS_3                         137                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       85    106     50
  AMP PEAK  8(7P11.2) WILD-TYPE      4      2     28
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          85                             4
  CLUS_2                         106                             2
  CLUS_3                          50                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7P11.2) MUTATED       49     42     44     44
  AMP PEAK  8(7P11.2) WILD-TYPE      5     16      0      1
D8V7, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          49                             5
  CLUS_2                          42                            16
  CLUS_3                          44                             0
  CLUS_4                          44                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       64     59     56
  AMP PEAK  8(7P11.2) WILD-TYPE      5     17      0
D8V8, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          64                             5
  CLUS_2                          59                            17
  CLUS_3                          56                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       31     66     34
  AMP PEAK  8(7P11.2) WILD-TYPE     13      1      2
D8V9, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          31                            13
  CLUS_2                          66                             1
  CLUS_3                          34                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7P11.2) MUTATED       17     90     24
  AMP PEAK  8(7P11.2) WILD-TYPE     13      2      1
D8V10, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          17                            13
  CLUS_2                          90                             2
  CLUS_3                          24                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED      133     64    124     82
  AMP PEAK  9(7Q11.21) WILD-TYPE     14     32     28     31
D9V1, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          133                             14
  CLUS_2                           64                             32
  CLUS_3                          124                             28
  CLUS_4                           82                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED      129     55     82    137
  AMP PEAK  9(7Q11.21) WILD-TYPE     19     47     18     21
D9V2, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          129                             19
  CLUS_2                           55                             47
  CLUS_3                           82                             18
  CLUS_4                          137                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED      141    133     63    103
  AMP PEAK  9(7Q11.21) WILD-TYPE     15     50     24     17
D9V3, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          141                             15
  CLUS_2                          133                             50
  CLUS_3                           63                             24
  CLUS_4                          103                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED      216    114    110
  AMP PEAK  9(7Q11.21) WILD-TYPE     77     10     19
D9V4, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          216                             77
  CLUS_2                          114                             10
  CLUS_3                          110                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED      145    189    130
  AMP PEAK  9(7Q11.21) WILD-TYPE     17     29     67
D9V5, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                          145                             17
  CLUS_2                          189                             29
  CLUS_3                          130                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       83     91     46
  AMP PEAK  9(7Q11.21) WILD-TYPE      6     17     32
D9V6, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           83                              6
  CLUS_2                           91                             17
  CLUS_3                           46                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7Q11.21) MUTATED       43     39     39     42
  AMP PEAK  9(7Q11.21) WILD-TYPE     11     19      5      3
D9V7, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           43                             11
  CLUS_2                           39                             19
  CLUS_3                           39                              5
  CLUS_4                           42                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       61     52     50
  AMP PEAK  9(7Q11.21) WILD-TYPE      8     24      6
D9V8, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           61                              8
  CLUS_2                           52                             24
  CLUS_3                           50                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       29     61     28
  AMP PEAK  9(7Q11.21) WILD-TYPE     15      6      8
D9V9, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           29                             15
  CLUS_2                           61                              6
  CLUS_3                           28                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7Q11.21) MUTATED       15     82     21
  AMP PEAK  9(7Q11.21) WILD-TYPE     15     10      4
D9V10, multiclass
        clus
vv       AMP PEAK  9(7Q11.21) MUTATED AMP PEAK  9(7Q11.21) WILD-TYPE
  CLUS_1                           15                             15
  CLUS_2                           82                             10
  CLUS_3                           21                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED      131     64    134     89
  AMP PEAK 10(7Q21.2) WILD-TYPE     16     32     18     24
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         131                            16
  CLUS_2                          64                            32
  CLUS_3                         134                            18
  CLUS_4                          89                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED      126     62     89    141
  AMP PEAK 10(7Q21.2) WILD-TYPE     22     40     11     17
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         126                            22
  CLUS_2                          62                            40
  CLUS_3                          89                            11
  CLUS_4                         141                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED      138    142     70    102
  AMP PEAK 10(7Q21.2) WILD-TYPE     18     41     17     18
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         138                            18
  CLUS_2                         142                            41
  CLUS_3                          70                            17
  CLUS_4                         102                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED      224    111    117
  AMP PEAK 10(7Q21.2) WILD-TYPE     69     13     12
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         224                            69
  CLUS_2                         111                            13
  CLUS_3                         117                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED      144    199    137
  AMP PEAK 10(7Q21.2) WILD-TYPE     18     19     60
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                         144                            18
  CLUS_2                         199                            19
  CLUS_3                         137                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       80     93     50
  AMP PEAK 10(7Q21.2) WILD-TYPE      9     15     28
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          80                             9
  CLUS_2                          93                            15
  CLUS_3                          50                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q21.2) MUTATED       44     42     40     42
  AMP PEAK 10(7Q21.2) WILD-TYPE     10     16      4      3
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          44                            10
  CLUS_2                          42                            16
  CLUS_3                          40                             4
  CLUS_4                          42                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       61     57     50
  AMP PEAK 10(7Q21.2) WILD-TYPE      8     19      6
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          61                             8
  CLUS_2                          57                            19
  CLUS_3                          50                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       33     61     32
  AMP PEAK 10(7Q21.2) WILD-TYPE     11      6      4
D10V9, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          33                            11
  CLUS_2                          61                             6
  CLUS_3                          32                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q21.2) MUTATED       20     85     21
  AMP PEAK 10(7Q21.2) WILD-TYPE     10      7      4
D10V10, multiclass
        clus
vv       AMP PEAK 10(7Q21.2) MUTATED AMP PEAK 10(7Q21.2) WILD-TYPE
  CLUS_1                          20                            10
  CLUS_2                          85                             7
  CLUS_3                          21                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      131     67    126     89
  AMP PEAK 11(7Q31.2) WILD-TYPE     16     29     26     24
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         131                            16
  CLUS_2                          67                            29
  CLUS_3                         126                            26
  CLUS_4                          89                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      131     63     83    136
  AMP PEAK 11(7Q31.2) WILD-TYPE     17     39     17     22
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         131                            17
  CLUS_2                          63                            39
  CLUS_3                          83                            17
  CLUS_4                         136                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED      137    136     71    102
  AMP PEAK 11(7Q31.2) WILD-TYPE     19     47     16     18
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         137                            19
  CLUS_2                         136                            47
  CLUS_3                          71                            16
  CLUS_4                         102                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED      225    110    111
  AMP PEAK 11(7Q31.2) WILD-TYPE     68     14     18
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         225                            68
  CLUS_2                         110                            14
  CLUS_3                         111                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED      140    193    140
  AMP PEAK 11(7Q31.2) WILD-TYPE     22     25     57
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                         140                            22
  CLUS_2                         193                            25
  CLUS_3                         140                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       78     89     54
  AMP PEAK 11(7Q31.2) WILD-TYPE     11     19     24
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          78                            11
  CLUS_2                          89                            19
  CLUS_3                          54                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q31.2) MUTATED       44     42     39     40
  AMP PEAK 11(7Q31.2) WILD-TYPE     10     16      5      5
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          44                            10
  CLUS_2                          42                            16
  CLUS_3                          39                             5
  CLUS_4                          40                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       61     55     49
  AMP PEAK 11(7Q31.2) WILD-TYPE      8     21      7
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          61                             8
  CLUS_2                          55                            21
  CLUS_3                          49                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       34     58     31
  AMP PEAK 11(7Q31.2) WILD-TYPE     10      9      5
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          34                            10
  CLUS_2                          58                             9
  CLUS_3                          31                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q31.2) MUTATED       20     83     20
  AMP PEAK 11(7Q31.2) WILD-TYPE     10      9      5
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q31.2) MUTATED AMP PEAK 11(7Q31.2) WILD-TYPE
  CLUS_1                          20                            10
  CLUS_2                          83                             9
  CLUS_3                          20                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED        9     25      7     21
  AMP PEAK 12(8Q24.21) WILD-TYPE    138     71    145     92
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            9                            138
  CLUS_2                           25                             71
  CLUS_3                            7                            145
  CLUS_4                           21                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       10     29      6     17
  AMP PEAK 12(8Q24.21) WILD-TYPE    138     73     94    141
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                           29                             73
  CLUS_3                            6                             94
  CLUS_4                           17                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       12     32     11     10
  AMP PEAK 12(8Q24.21) WILD-TYPE    144    151     76    110
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           12                            144
  CLUS_2                           32                            151
  CLUS_3                           11                             76
  CLUS_4                           10                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       41     11     13
  AMP PEAK 12(8Q24.21) WILD-TYPE    252    113    116
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           41                            252
  CLUS_2                           11                            113
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       39      8     23
  AMP PEAK 12(8Q24.21) WILD-TYPE    123    210    174
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           39                            123
  CLUS_2                            8                            210
  CLUS_3                           23                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED        5     12     23
  AMP PEAK 12(8Q24.21) WILD-TYPE     84     96     55
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            5                             84
  CLUS_2                           12                             96
  CLUS_3                           23                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED        4     11      5      5
  AMP PEAK 12(8Q24.21) WILD-TYPE     50     47     39     40
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                           11                             47
  CLUS_3                            5                             39
  CLUS_4                            5                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED        6     13      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     63     63     50
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            6                             63
  CLUS_2                           13                             63
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       11      8      3
  AMP PEAK 12(8Q24.21) WILD-TYPE     33     59     33
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                            8                             59
  CLUS_3                            3                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED        7     13      2
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     79     23
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           13                             79
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        7      6      7      8
  AMP PEAK 13(11P13) WILD-TYPE    140     90    145    105
D13V1, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          7                          140
  CLUS_2                          6                           90
  CLUS_3                          7                          145
  CLUS_4                          8                          105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        7      5      3     13
  AMP PEAK 13(11P13) WILD-TYPE    141     97     97    145
D13V2, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          7                          141
  CLUS_2                          5                           97
  CLUS_3                          3                           97
  CLUS_4                         13                          145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        9     10      2      8
  AMP PEAK 13(11P13) WILD-TYPE    147    173     85    112
D13V3, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          9                          147
  CLUS_2                         10                          173
  CLUS_3                          2                           85
  CLUS_4                          8                          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED       12     10      7
  AMP PEAK 13(11P13) WILD-TYPE    281    114    122
D13V4, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                         12                          281
  CLUS_2                         10                          114
  CLUS_3                          7                          122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED       10      8     13
  AMP PEAK 13(11P13) WILD-TYPE    152    210    184
D13V5, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                         10                          152
  CLUS_2                          8                          210
  CLUS_3                         13                          184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        6      7      4
  AMP PEAK 13(11P13) WILD-TYPE     83    101     74
D13V6, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          6                           83
  CLUS_2                          7                          101
  CLUS_3                          4                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED        3      1      1      2
  AMP PEAK 13(11P13) WILD-TYPE     51     57     43     43
D13V7, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          3                           51
  CLUS_2                          1                           57
  CLUS_3                          1                           43
  CLUS_4                          2                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        4      1      2
  AMP PEAK 13(11P13) WILD-TYPE     65     75     54
D13V8, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          4                           65
  CLUS_2                          1                           75
  CLUS_3                          2                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        3      4      2
  AMP PEAK 13(11P13) WILD-TYPE     41     63     34
D13V9, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          3                           41
  CLUS_2                          4                           63
  CLUS_3                          2                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        1      7      1
  AMP PEAK 13(11P13) WILD-TYPE     29     85     24
D13V10, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          1                           29
  CLUS_2                          7                           85
  CLUS_3                          1                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED       19     17     21     19
  AMP PEAK 14(12P13.32) WILD-TYPE    128     79    131     94
D14V1, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            19                             128
  CLUS_2                            17                              79
  CLUS_3                            21                             131
  CLUS_4                            19                              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED       20     21     13     22
  AMP PEAK 14(12P13.32) WILD-TYPE    128     81     87    136
D14V2, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            20                             128
  CLUS_2                            21                              81
  CLUS_3                            13                              87
  CLUS_4                            22                             136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED       18     34     12     18
  AMP PEAK 14(12P13.32) WILD-TYPE    138    149     75    102
D14V3, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            18                             138
  CLUS_2                            34                             149
  CLUS_3                            12                              75
  CLUS_4                            18                             102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED       39     20     23
  AMP PEAK 14(12P13.32) WILD-TYPE    254    104    106
D14V4, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            39                             254
  CLUS_2                            20                             104
  CLUS_3                            23                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED       40     18     26
  AMP PEAK 14(12P13.32) WILD-TYPE    122    200    171
D14V5, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            40                             122
  CLUS_2                            18                             200
  CLUS_3                            26                             171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED       10     12     13
  AMP PEAK 14(12P13.32) WILD-TYPE     79     96     65
D14V6, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                            10                              79
  CLUS_2                            12                              96
  CLUS_3                            13                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12P13.32) MUTATED        4      9      8      7
  AMP PEAK 14(12P13.32) WILD-TYPE     50     49     36     38
D14V7, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             4                              50
  CLUS_2                             9                              49
  CLUS_3                             8                              36
  CLUS_4                             7                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED        8      9     11
  AMP PEAK 14(12P13.32) WILD-TYPE     61     67     45
D14V8, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             8                              61
  CLUS_2                             9                              67
  CLUS_3                            11                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED        5     14      4
  AMP PEAK 14(12P13.32) WILD-TYPE     39     53     32
D14V9, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             5                              39
  CLUS_2                            14                              53
  CLUS_3                             4                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12P13.32) MUTATED        3     17      3
  AMP PEAK 14(12P13.32) WILD-TYPE     27     75     22
D14V10, multiclass
        clus
vv       AMP PEAK 14(12P13.32) MUTATED AMP PEAK 14(12P13.32) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            17                              75
  CLUS_3                             3                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       29     27     31     36
  AMP PEAK 15(12Q14.1) WILD-TYPE    118     69    121     77
D15V1, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           29                            118
  CLUS_2                           27                             69
  CLUS_3                           31                            121
  CLUS_4                           36                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       31     32     19     41
  AMP PEAK 15(12Q14.1) WILD-TYPE    117     70     81    117
D15V2, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           31                            117
  CLUS_2                           32                             70
  CLUS_3                           19                             81
  CLUS_4                           41                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED       30     55     19     25
  AMP PEAK 15(12Q14.1) WILD-TYPE    126    128     68     95
D15V3, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           30                            126
  CLUS_2                           55                            128
  CLUS_3                           19                             68
  CLUS_4                           25                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       63     26     40
  AMP PEAK 15(12Q14.1) WILD-TYPE    230     98     89
D15V4, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           63                            230
  CLUS_2                           26                             98
  CLUS_3                           40                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       65     39     30
  AMP PEAK 15(12Q14.1) WILD-TYPE     97    179    167
D15V5, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           65                             97
  CLUS_2                           39                            179
  CLUS_3                           30                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       18     26     22
  AMP PEAK 15(12Q14.1) WILD-TYPE     71     82     56
D15V6, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           18                             71
  CLUS_2                           26                             82
  CLUS_3                           22                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(12Q14.1) MUTATED        8     20      9      9
  AMP PEAK 15(12Q14.1) WILD-TYPE     46     38     35     36
D15V7, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                           20                             38
  CLUS_3                            9                             35
  CLUS_4                            9                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       12     22     12
  AMP PEAK 15(12Q14.1) WILD-TYPE     57     54     44
D15V8, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           12                             57
  CLUS_2                           22                             54
  CLUS_3                           12                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       19     15      8
  AMP PEAK 15(12Q14.1) WILD-TYPE     25     52     28
D15V9, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           15                             52
  CLUS_3                            8                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(12Q14.1) MUTATED       13     22      7
  AMP PEAK 15(12Q14.1) WILD-TYPE     17     70     18
D15V10, multiclass
        clus
vv       AMP PEAK 15(12Q14.1) MUTATED AMP PEAK 15(12Q14.1) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                           22                             70
  CLUS_3                            7                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       23     19     22     18
  AMP PEAK 16(12Q15) WILD-TYPE    124     77    130     95
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         23                          124
  CLUS_2                         19                           77
  CLUS_3                         22                          130
  CLUS_4                         18                           95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       25     15     11     31
  AMP PEAK 16(12Q15) WILD-TYPE    123     87     89    127
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         25                          123
  CLUS_2                         15                           87
  CLUS_3                         11                           89
  CLUS_4                         31                          127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED       22     31     17     21
  AMP PEAK 16(12Q15) WILD-TYPE    134    152     70     99
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         22                          134
  CLUS_2                         31                          152
  CLUS_3                         17                           70
  CLUS_4                         21                           99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       43     21     27
  AMP PEAK 16(12Q15) WILD-TYPE    250    103    102
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         43                          250
  CLUS_2                         21                          103
  CLUS_3                         27                          102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       48     25     20
  AMP PEAK 16(12Q15) WILD-TYPE    114    193    177
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         48                          114
  CLUS_2                         25                          193
  CLUS_3                         20                          177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED       17     14     12
  AMP PEAK 16(12Q15) WILD-TYPE     72     94     66
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                         17                           72
  CLUS_2                         14                           94
  CLUS_3                         12                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q15) MUTATED        3      9      7      6
  AMP PEAK 16(12Q15) WILD-TYPE     51     49     37     39
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          3                           51
  CLUS_2                          9                           49
  CLUS_3                          7                           37
  CLUS_4                          6                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        6      9     10
  AMP PEAK 16(12Q15) WILD-TYPE     63     67     46
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          6                           63
  CLUS_2                          9                           67
  CLUS_3                         10                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        9     12      3
  AMP PEAK 16(12Q15) WILD-TYPE     35     55     33
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          9                           35
  CLUS_2                         12                           55
  CLUS_3                          3                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q15) MUTATED        5     16      3
  AMP PEAK 16(12Q15) WILD-TYPE     25     76     22
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         16                           76
  CLUS_3                          3                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        8     10      7      5
  AMP PEAK 17(13Q34) WILD-TYPE    139     86    145    108
D17V1, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          8                          139
  CLUS_2                         10                           86
  CLUS_3                          7                          145
  CLUS_4                          5                          108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        6      8      3     13
  AMP PEAK 17(13Q34) WILD-TYPE    142     94     97    145
D17V2, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          6                          142
  CLUS_2                          8                           94
  CLUS_3                          3                           97
  CLUS_4                         13                          145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        3     17      5      6
  AMP PEAK 17(13Q34) WILD-TYPE    153    166     82    114
D17V3, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          3                          153
  CLUS_2                         17                          166
  CLUS_3                          5                           82
  CLUS_4                          6                          114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED       20      6      5
  AMP PEAK 17(13Q34) WILD-TYPE    273    118    124
D17V4, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                         20                          273
  CLUS_2                          6                          118
  CLUS_3                          5                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED       12      6     14
  AMP PEAK 17(13Q34) WILD-TYPE    150    212    183
D17V5, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                         12                          150
  CLUS_2                          6                          212
  CLUS_3                         14                          183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        4      7      9
  AMP PEAK 17(13Q34) WILD-TYPE     85    101     69
D17V6, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          4                           85
  CLUS_2                          7                          101
  CLUS_3                          9                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(13Q34) MUTATED        1      1      6      1
  AMP PEAK 17(13Q34) WILD-TYPE     53     57     38     44
D17V7, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          1                           53
  CLUS_2                          1                           57
  CLUS_3                          6                           38
  CLUS_4                          1                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        2      2      5
  AMP PEAK 17(13Q34) WILD-TYPE     67     74     51
D17V8, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          2                           67
  CLUS_2                          2                           74
  CLUS_3                          5                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        2      4      4
  AMP PEAK 17(13Q34) WILD-TYPE     42     63     32
D17V9, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          2                           42
  CLUS_2                          4                           63
  CLUS_3                          4                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(13Q34) MUTATED        1      7      2
  AMP PEAK 17(13Q34) WILD-TYPE     29     85     23
D17V10, multiclass
        clus
vv       AMP PEAK 17(13Q34) MUTATED AMP PEAK 17(13Q34) WILD-TYPE
  CLUS_1                          1                           29
  CLUS_2                          7                           85
  CLUS_3                          2                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        7     10      6      4
  AMP PEAK 18(13Q34) WILD-TYPE    140     86    146    109
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          7                          140
  CLUS_2                         10                           86
  CLUS_3                          6                          146
  CLUS_4                          4                          109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        4      7      4     12
  AMP PEAK 18(13Q34) WILD-TYPE    144     95     96    146
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                          144
  CLUS_2                          7                           95
  CLUS_3                          4                           96
  CLUS_4                         12                          146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        4     14      4      6
  AMP PEAK 18(13Q34) WILD-TYPE    152    169     83    114
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                          152
  CLUS_2                         14                          169
  CLUS_3                          4                           83
  CLUS_4                          6                          114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       16      7      5
  AMP PEAK 18(13Q34) WILD-TYPE    277    117    124
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         16                          277
  CLUS_2                          7                          117
  CLUS_3                          5                          124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED       13      6     11
  AMP PEAK 18(13Q34) WILD-TYPE    149    212    186
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                         13                          149
  CLUS_2                          6                          212
  CLUS_3                         11                          186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        4      6      7
  AMP PEAK 18(13Q34) WILD-TYPE     85    102     71
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          4                           85
  CLUS_2                          6                          102
  CLUS_3                          7                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q34) MUTATED        1      2      6      1
  AMP PEAK 18(13Q34) WILD-TYPE     53     56     38     44
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          1                           53
  CLUS_2                          2                           56
  CLUS_3                          6                           38
  CLUS_4                          1                           44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        2      3      5
  AMP PEAK 18(13Q34) WILD-TYPE     67     73     51
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          2                           67
  CLUS_2                          3                           73
  CLUS_3                          5                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        2      3      4
  AMP PEAK 18(13Q34) WILD-TYPE     42     64     32
D18V9, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          2                           42
  CLUS_2                          3                           64
  CLUS_3                          4                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q34) MUTATED        1      6      2
  AMP PEAK 18(13Q34) WILD-TYPE     29     86     23
D18V10, multiclass
        clus
vv       AMP PEAK 18(13Q34) MUTATED AMP PEAK 18(13Q34) WILD-TYPE
  CLUS_1                          1                           29
  CLUS_2                          6                           86
  CLUS_3                          2                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED        6      6     15      5
  AMP PEAK 19(14Q32.33) WILD-TYPE    141     90    137    108
D19V1, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             6                             141
  CLUS_2                             6                              90
  CLUS_3                            15                             137
  CLUS_4                             5                             108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED        9      5      9      9
  AMP PEAK 19(14Q32.33) WILD-TYPE    139     97     91    149
D19V2, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             9                             139
  CLUS_2                             5                              97
  CLUS_3                             9                              91
  CLUS_4                             9                             149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED       12      9     10      4
  AMP PEAK 19(14Q32.33) WILD-TYPE    144    174     77    116
D19V3, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            12                             144
  CLUS_2                             9                             174
  CLUS_3                            10                              77
  CLUS_4                             4                             116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED       19      7      9
  AMP PEAK 19(14Q32.33) WILD-TYPE    274    117    120
D19V4, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            19                             274
  CLUS_2                             7                             117
  CLUS_3                             9                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED       13     15      8
  AMP PEAK 19(14Q32.33) WILD-TYPE    149    203    189
D19V5, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                            13                             149
  CLUS_2                            15                             203
  CLUS_3                             8                             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        4      9      4
  AMP PEAK 19(14Q32.33) WILD-TYPE     85     99     74
D19V6, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             4                              85
  CLUS_2                             9                              99
  CLUS_3                             4                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(14Q32.33) MUTATED        0      5      5      1
  AMP PEAK 19(14Q32.33) WILD-TYPE     54     53     39     44
D19V7, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             0                              54
  CLUS_2                             5                              53
  CLUS_3                             5                              39
  CLUS_4                             1                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        2      4      5
  AMP PEAK 19(14Q32.33) WILD-TYPE     67     72     51
D19V8, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             2                              67
  CLUS_2                             4                              72
  CLUS_3                             5                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        1      3      6
  AMP PEAK 19(14Q32.33) WILD-TYPE     43     64     30
D19V9, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             1                              43
  CLUS_2                             3                              64
  CLUS_3                             6                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(14Q32.33) MUTATED        0      6      4
  AMP PEAK 19(14Q32.33) WILD-TYPE     30     86     21
D19V10, multiclass
        clus
vv       AMP PEAK 19(14Q32.33) MUTATED AMP PEAK 19(14Q32.33) WILD-TYPE
  CLUS_1                             0                              30
  CLUS_2                             6                              86
  CLUS_3                             4                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED        9     12      6     20
  AMP PEAK 20(17P13.2) WILD-TYPE    138     84    146     93
D20V1, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            9                            138
  CLUS_2                           12                             84
  CLUS_3                            6                            146
  CLUS_4                           20                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED       10     18      5     14
  AMP PEAK 20(17P13.2) WILD-TYPE    138     84     95    144
D20V2, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           10                            138
  CLUS_2                           18                             84
  CLUS_3                            5                             95
  CLUS_4                           14                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED        6     21      8     13
  AMP PEAK 20(17P13.2) WILD-TYPE    150    162     79    107
D20V3, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            6                            150
  CLUS_2                           21                            162
  CLUS_3                            8                             79
  CLUS_4                           13                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED       32     10      6
  AMP PEAK 20(17P13.2) WILD-TYPE    261    114    123
D20V4, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           32                            261
  CLUS_2                           10                            114
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED       25     11     15
  AMP PEAK 20(17P13.2) WILD-TYPE    137    207    182
D20V5, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           25                            137
  CLUS_2                           11                            207
  CLUS_3                           15                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        5      5     13
  AMP PEAK 20(17P13.2) WILD-TYPE     84    103     65
D20V6, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            5                             84
  CLUS_2                            5                            103
  CLUS_3                           13                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17P13.2) MUTATED        4      9      1      5
  AMP PEAK 20(17P13.2) WILD-TYPE     50     49     43     40
D20V7, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                            9                             49
  CLUS_3                            1                             43
  CLUS_4                            5                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        9      6      4
  AMP PEAK 20(17P13.2) WILD-TYPE     60     70     52
D20V8, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            9                             60
  CLUS_2                            6                             70
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        5      3      2
  AMP PEAK 20(17P13.2) WILD-TYPE     39     64     34
D20V9, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            3                             64
  CLUS_3                            2                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17P13.2) MUTATED        3      5      2
  AMP PEAK 20(17P13.2) WILD-TYPE     27     87     23
D20V10, multiclass
        clus
vv       AMP PEAK 20(17P13.2) MUTATED AMP PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            5                             87
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED       19     22     13     19
  AMP PEAK 21(17Q25.1) WILD-TYPE    128     74    139     94
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           19                            128
  CLUS_2                           22                             74
  CLUS_3                           13                            139
  CLUS_4                           19                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED       16     19     12     26
  AMP PEAK 21(17Q25.1) WILD-TYPE    132     83     88    132
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           16                            132
  CLUS_2                           19                             83
  CLUS_3                           12                             88
  CLUS_4                           26                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED       16     30     12     21
  AMP PEAK 21(17Q25.1) WILD-TYPE    140    153     75     99
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           16                            140
  CLUS_2                           30                            153
  CLUS_3                           12                             75
  CLUS_4                           21                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED       46     16     17
  AMP PEAK 21(17Q25.1) WILD-TYPE    247    108    112
D21V4, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           46                            247
  CLUS_2                           16                            108
  CLUS_3                           17                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED       42     20     22
  AMP PEAK 21(17Q25.1) WILD-TYPE    120    198    175
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           42                            120
  CLUS_2                           20                            198
  CLUS_3                           22                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED        9     16     16
  AMP PEAK 21(17Q25.1) WILD-TYPE     80     92     62
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            9                             80
  CLUS_2                           16                             92
  CLUS_3                           16                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(17Q25.1) MUTATED        8      8      1      6
  AMP PEAK 21(17Q25.1) WILD-TYPE     46     50     43     39
D21V7, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            8                             46
  CLUS_2                            8                             50
  CLUS_3                            1                             43
  CLUS_4                            6                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED       12      6      5
  AMP PEAK 21(17Q25.1) WILD-TYPE     57     70     51
D21V8, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           12                             57
  CLUS_2                            6                             70
  CLUS_3                            5                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED        7      9      4
  AMP PEAK 21(17Q25.1) WILD-TYPE     37     58     32
D21V9, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                            9                             58
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(17Q25.1) MUTATED        5     11      4
  AMP PEAK 21(17Q25.1) WILD-TYPE     25     81     21
D21V10, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           11                             81
  CLUS_3                            4                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       58     34     95     28
  AMP PEAK 22(19P13.3) WILD-TYPE     89     62     57     85
D22V1, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           58                             89
  CLUS_2                           34                             62
  CLUS_3                           95                             57
  CLUS_4                           28                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       67     30     62     56
  AMP PEAK 22(19P13.3) WILD-TYPE     81     72     38    102
D22V2, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           67                             81
  CLUS_2                           30                             72
  CLUS_3                           62                             38
  CLUS_4                           56                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       67     86     25     52
  AMP PEAK 22(19P13.3) WILD-TYPE     89     97     62     68
D22V3, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           67                             89
  CLUS_2                           86                             97
  CLUS_3                           25                             62
  CLUS_4                           52                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED      106     53     71
  AMP PEAK 22(19P13.3) WILD-TYPE    187     71     58
D22V4, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                          106                            187
  CLUS_2                           53                             71
  CLUS_3                           71                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       46    148     50
  AMP PEAK 22(19P13.3) WILD-TYPE    116     70    147
D22V5, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           46                            116
  CLUS_2                          148                             70
  CLUS_3                           50                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       29     72     17
  AMP PEAK 22(19P13.3) WILD-TYPE     60     36     61
D22V6, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           29                             60
  CLUS_2                           72                             36
  CLUS_3                           17                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(19P13.3) MUTATED       18     21     28     16
  AMP PEAK 22(19P13.3) WILD-TYPE     36     37     16     29
D22V7, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           18                             36
  CLUS_2                           21                             37
  CLUS_3                           28                             16
  CLUS_4                           16                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       23     23     37
  AMP PEAK 22(19P13.3) WILD-TYPE     46     53     19
D22V8, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           23                             46
  CLUS_2                           23                             53
  CLUS_3                           37                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       15     27     14
  AMP PEAK 22(19P13.3) WILD-TYPE     29     40     22
D22V9, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           15                             29
  CLUS_2                           27                             40
  CLUS_3                           14                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(19P13.3) MUTATED       12     35      9
  AMP PEAK 22(19P13.3) WILD-TYPE     18     57     16
D22V10, multiclass
        clus
vv       AMP PEAK 22(19P13.3) MUTATED AMP PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           35                             57
  CLUS_3                            9                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.2) MUTATED       57     38    101     25
  AMP PEAK 23(19P13.2) WILD-TYPE     90     58     51     88
D23V1, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           57                             90
  CLUS_2                           38                             58
  CLUS_3                          101                             51
  CLUS_4                           25                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.2) MUTATED       66     32     66     57
  AMP PEAK 23(19P13.2) WILD-TYPE     82     70     34    101
D23V2, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           66                             82
  CLUS_2                           32                             70
  CLUS_3                           66                             34
  CLUS_4                           57                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.2) MUTATED       73     85     29     49
  AMP PEAK 23(19P13.2) WILD-TYPE     83     98     58     71
D23V3, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           73                             83
  CLUS_2                           85                             98
  CLUS_3                           29                             58
  CLUS_4                           49                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.2) MUTATED      109     54     73
  AMP PEAK 23(19P13.2) WILD-TYPE    184     70     56
D23V4, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                          109                            184
  CLUS_2                           54                             70
  CLUS_3                           73                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.2) MUTATED       50    150     49
  AMP PEAK 23(19P13.2) WILD-TYPE    112     68    148
D23V5, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           50                            112
  CLUS_2                          150                             68
  CLUS_3                           49                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.2) MUTATED       31     74     19
  AMP PEAK 23(19P13.2) WILD-TYPE     58     34     59
D23V6, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           31                             58
  CLUS_2                           74                             34
  CLUS_3                           19                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(19P13.2) MUTATED       18     21     28     18
  AMP PEAK 23(19P13.2) WILD-TYPE     36     37     16     27
D23V7, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           18                             36
  CLUS_2                           21                             37
  CLUS_3                           28                             16
  CLUS_4                           18                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.2) MUTATED       25     23     37
  AMP PEAK 23(19P13.2) WILD-TYPE     44     53     19
D23V8, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           25                             44
  CLUS_2                           23                             53
  CLUS_3                           37                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.2) MUTATED       12     30     15
  AMP PEAK 23(19P13.2) WILD-TYPE     32     37     21
D23V9, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                           30                             37
  CLUS_3                           15                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(19P13.2) MUTATED       10     37     10
  AMP PEAK 23(19P13.2) WILD-TYPE     20     55     15
D23V10, multiclass
        clus
vv       AMP PEAK 23(19P13.2) MUTATED AMP PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           37                             55
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19Q12) MUTATED       55     31     85     17
  AMP PEAK 24(19Q12) WILD-TYPE     92     65     67     96
D24V1, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         55                           92
  CLUS_2                         31                           65
  CLUS_3                         85                           67
  CLUS_4                         17                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19Q12) MUTATED       62     21     54     51
  AMP PEAK 24(19Q12) WILD-TYPE     86     81     46    107
D24V2, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         62                           86
  CLUS_2                         21                           81
  CLUS_3                         54                           46
  CLUS_4                         51                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19Q12) MUTATED       64     66     25     46
  AMP PEAK 24(19Q12) WILD-TYPE     92    117     62     74
D24V3, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         64                           92
  CLUS_2                         66                          117
  CLUS_3                         25                           62
  CLUS_4                         46                           74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q12) MUTATED       91     49     61
  AMP PEAK 24(19Q12) WILD-TYPE    202     75     68
D24V4, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         91                          202
  CLUS_2                         49                           75
  CLUS_3                         61                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q12) MUTATED       44    132     40
  AMP PEAK 24(19Q12) WILD-TYPE    118     86    157
D24V5, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         44                          118
  CLUS_2                        132                           86
  CLUS_3                         40                          157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q12) MUTATED       31     64     10
  AMP PEAK 24(19Q12) WILD-TYPE     58     44     68
D24V6, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         31                           58
  CLUS_2                         64                           44
  CLUS_3                         10                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(19Q12) MUTATED       16     15     25     15
  AMP PEAK 24(19Q12) WILD-TYPE     38     43     19     30
D24V7, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         16                           38
  CLUS_2                         15                           43
  CLUS_3                         25                           19
  CLUS_4                         15                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q12) MUTATED       23     17     31
  AMP PEAK 24(19Q12) WILD-TYPE     46     59     25
D24V8, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         23                           46
  CLUS_2                         17                           59
  CLUS_3                         31                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q12) MUTATED        9     26     15
  AMP PEAK 24(19Q12) WILD-TYPE     35     41     21
D24V9, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                          9                           35
  CLUS_2                         26                           41
  CLUS_3                         15                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(19Q12) MUTATED        6     34     10
  AMP PEAK 24(19Q12) WILD-TYPE     24     58     15
D24V10, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                          6                           24
  CLUS_2                         34                           58
  CLUS_3                         10                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(21Q21.1) MUTATED       28     13     11      8
  AMP PEAK 25(21Q21.1) WILD-TYPE    119     83    141    105
D25V1, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           28                            119
  CLUS_2                           13                             83
  CLUS_3                           11                            141
  CLUS_4                            8                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(21Q21.1) MUTATED       26      9      7     18
  AMP PEAK 25(21Q21.1) WILD-TYPE    122     93     93    140
D25V2, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           26                            122
  CLUS_2                            9                             93
  CLUS_3                            7                             93
  CLUS_4                           18                            140
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(21Q21.1) MUTATED       26     19      4     19
  AMP PEAK 25(21Q21.1) WILD-TYPE    130    164     83    101
D25V3, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           26                            130
  CLUS_2                           19                            164
  CLUS_3                            4                             83
  CLUS_4                           19                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q21.1) MUTATED       29     26     13
  AMP PEAK 25(21Q21.1) WILD-TYPE    264     98    116
D25V4, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           29                            264
  CLUS_2                           26                             98
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q21.1) MUTATED       34     13     23
  AMP PEAK 25(21Q21.1) WILD-TYPE    128    205    174
D25V5, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           34                            128
  CLUS_2                           13                            205
  CLUS_3                           23                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q21.1) MUTATED       19      9      7
  AMP PEAK 25(21Q21.1) WILD-TYPE     70     99     71
D25V6, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           19                             70
  CLUS_2                            9                             99
  CLUS_3                            7                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(21Q21.1) MUTATED        7      5      4      7
  AMP PEAK 25(21Q21.1) WILD-TYPE     47     53     40     38
D25V7, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                            5                             53
  CLUS_3                            4                             40
  CLUS_4                            7                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q21.1) MUTATED       13      6      4
  AMP PEAK 25(21Q21.1) WILD-TYPE     56     70     52
D25V8, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                           13                             56
  CLUS_2                            6                             70
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q21.1) MUTATED        4     16      4
  AMP PEAK 25(21Q21.1) WILD-TYPE     40     51     32
D25V9, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           16                             51
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(21Q21.1) MUTATED        3     18      3
  AMP PEAK 25(21Q21.1) WILD-TYPE     27     74     22
D25V10, multiclass
        clus
vv       AMP PEAK 25(21Q21.1) MUTATED AMP PEAK 25(21Q21.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           18                             74
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       24     18     28     22
  DEL PEAK  1(1P36.32) WILD-TYPE    123     78    124     91
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                            123
  CLUS_2                           18                             78
  CLUS_3                           28                            124
  CLUS_4                           22                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       24     22     19     27
  DEL PEAK  1(1P36.32) WILD-TYPE    124     80     81    131
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                           22                             80
  CLUS_3                           19                             81
  CLUS_4                           27                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       26     35     19     18
  DEL PEAK  1(1P36.32) WILD-TYPE    130    148     68    102
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           26                            130
  CLUS_2                           35                            148
  CLUS_3                           19                             68
  CLUS_4                           18                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       54     16     28
  DEL PEAK  1(1P36.32) WILD-TYPE    239    108    101
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           54                            239
  CLUS_2                           16                            108
  CLUS_3                           28                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       26     43     31
  DEL PEAK  1(1P36.32) WILD-TYPE    136    175    166
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           26                            136
  CLUS_2                           43                            175
  CLUS_3                           31                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       14     17     20
  DEL PEAK  1(1P36.32) WILD-TYPE     75     91     58
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           14                             75
  CLUS_2                           17                             91
  CLUS_3                           20                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        7     12      9     10
  DEL PEAK  1(1P36.32) WILD-TYPE     47     46     35     35
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                           12                             46
  CLUS_3                            9                             35
  CLUS_4                           10                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       16     15      7
  DEL PEAK  1(1P36.32) WILD-TYPE     53     61     49
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           16                             53
  CLUS_2                           15                             61
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        5      7      8
  DEL PEAK  1(1P36.32) WILD-TYPE     39     60     28
D26V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            7                             60
  CLUS_3                            8                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        3     12      5
  DEL PEAK  1(1P36.32) WILD-TYPE     27     80     20
D26V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           12                             80
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  2(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       35     15     46     26
  DEL PEAK  2(1P36.23) WILD-TYPE    112     81    106     87
D27V1, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           35                            112
  CLUS_2                           15                             81
  CLUS_3                           46                            106
  CLUS_4                           26                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       35     17     29     41
  DEL PEAK  2(1P36.23) WILD-TYPE    113     85     71    117
D27V2, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           35                            113
  CLUS_2                           17                             85
  CLUS_3                           29                             71
  CLUS_4                           41                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       38     38     22     33
  DEL PEAK  2(1P36.23) WILD-TYPE    118    145     65     87
D27V3, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           38                            118
  CLUS_2                           38                            145
  CLUS_3                           22                             65
  CLUS_4                           33                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       65     32     34
  DEL PEAK  2(1P36.23) WILD-TYPE    228     92     95
D27V4, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           65                            228
  CLUS_2                           32                             92
  CLUS_3                           34                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       34     71     31
  DEL PEAK  2(1P36.23) WILD-TYPE    128    147    166
D27V5, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           34                            128
  CLUS_2                           71                            147
  CLUS_3                           31                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       22     25     14
  DEL PEAK  2(1P36.23) WILD-TYPE     67     83     64
D27V6, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           22                             67
  CLUS_2                           25                             83
  CLUS_3                           14                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.23) MUTATED       11     12     15     14
  DEL PEAK  2(1P36.23) WILD-TYPE     43     46     29     31
D27V7, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           12                             46
  CLUS_3                           15                             29
  CLUS_4                           14                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED       21     15     16
  DEL PEAK  2(1P36.23) WILD-TYPE     48     61     40
D27V8, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                           21                             48
  CLUS_2                           15                             61
  CLUS_3                           16                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED        6     15     15
  DEL PEAK  2(1P36.23) WILD-TYPE     38     52     21
D27V9, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           15                             52
  CLUS_3                           15                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.23) MUTATED        4     22     10
  DEL PEAK  2(1P36.23) WILD-TYPE     26     70     15
D27V10, multiclass
        clus
vv       DEL PEAK  2(1P36.23) MUTATED DEL PEAK  2(1P36.23) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           22                             70
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  3(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       22     13     13     10
  DEL PEAK  3(1P32.3) WILD-TYPE    125     83    139    103
D28V1, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          22                           125
  CLUS_2                          13                            83
  CLUS_3                          13                           139
  CLUS_4                          10                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       17     15      7     19
  DEL PEAK  3(1P32.3) WILD-TYPE    131     87     93    139
D28V2, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                          15                            87
  CLUS_3                           7                            93
  CLUS_4                          19                           139
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED       20     18     10     12
  DEL PEAK  3(1P32.3) WILD-TYPE    136    165     77    108
D28V3, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          20                           136
  CLUS_2                          18                           165
  CLUS_3                          10                            77
  CLUS_4                          12                           108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       35      8     17
  DEL PEAK  3(1P32.3) WILD-TYPE    258    116    112
D28V4, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          35                           258
  CLUS_2                           8                           116
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED       16     20     25
  DEL PEAK  3(1P32.3) WILD-TYPE    146    198    172
D28V5, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                          16                           146
  CLUS_2                          20                           198
  CLUS_3                          25                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        7     11      8
  DEL PEAK  3(1P32.3) WILD-TYPE     82     97     70
D28V6, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                          11                            97
  CLUS_3                           8                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P32.3) MUTATED        5      6      2      5
  DEL PEAK  3(1P32.3) WILD-TYPE     49     52     42     40
D28V7, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           6                            52
  CLUS_3                           2                            42
  CLUS_4                           5                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        8      7      3
  DEL PEAK  3(1P32.3) WILD-TYPE     61     69     53
D28V8, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           8                            61
  CLUS_2                           7                            69
  CLUS_3                           3                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        8      9      6
  DEL PEAK  3(1P32.3) WILD-TYPE     36     58     30
D28V9, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                           9                            58
  CLUS_3                           6                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P32.3) MUTATED        7     10      6
  DEL PEAK  3(1P32.3) WILD-TYPE     23     82     19
D28V10, multiclass
        clus
vv       DEL PEAK  3(1P32.3) MUTATED DEL PEAK  3(1P32.3) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          10                            82
  CLUS_3                           6                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  4(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       12      9     12      9
  DEL PEAK  4(1P22.1) WILD-TYPE    135     87    140    104
D29V1, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          12                           135
  CLUS_2                           9                            87
  CLUS_3                          12                           140
  CLUS_4                           9                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       15      7     10     10
  DEL PEAK  4(1P22.1) WILD-TYPE    133     95     90    148
D29V2, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          15                           133
  CLUS_2                           7                            95
  CLUS_3                          10                            90
  CLUS_4                          10                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED       12     18      7      8
  DEL PEAK  4(1P22.1) WILD-TYPE    144    165     80    112
D29V3, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          12                           144
  CLUS_2                          18                           165
  CLUS_3                           7                            80
  CLUS_4                           8                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED       25      3     17
  DEL PEAK  4(1P22.1) WILD-TYPE    268    121    112
D29V4, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                          25                           268
  CLUS_2                           3                           121
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        8     23     17
  DEL PEAK  4(1P22.1) WILD-TYPE    154    195    180
D29V5, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           8                           154
  CLUS_2                          23                           195
  CLUS_3                          17                           180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        5     16      6
  DEL PEAK  4(1P22.1) WILD-TYPE     84     92     72
D29V6, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          16                            92
  CLUS_3                           6                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1P22.1) MUTATED        4      7      4      4
  DEL PEAK  4(1P22.1) WILD-TYPE     50     51     40     41
D29V7, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                           7                            51
  CLUS_3                           4                            40
  CLUS_4                           4                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        8      7      4
  DEL PEAK  4(1P22.1) WILD-TYPE     61     69     52
D29V8, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           8                            61
  CLUS_2                           7                            69
  CLUS_3                           4                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        3      5      2
  DEL PEAK  4(1P22.1) WILD-TYPE     41     62     34
D29V9, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           5                            62
  CLUS_3                           2                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1P22.1) MUTATED        4      5      1
  DEL PEAK  4(1P22.1) WILD-TYPE     26     87     24
D29V10, multiclass
        clus
vv       DEL PEAK  4(1P22.1) MUTATED DEL PEAK  4(1P22.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           5                            87
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  5(1Q42.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       17      4     11     10
  DEL PEAK  5(1Q42.11) WILD-TYPE    130     92    141    103
D30V1, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           17                            130
  CLUS_2                            4                             92
  CLUS_3                           11                            141
  CLUS_4                           10                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       15      8      7     12
  DEL PEAK  5(1Q42.11) WILD-TYPE    133     94     93    146
D30V2, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            133
  CLUS_2                            8                             94
  CLUS_3                            7                             93
  CLUS_4                           12                            146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED       16     12      7     13
  DEL PEAK  5(1Q42.11) WILD-TYPE    140    171     80    107
D30V3, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           16                            140
  CLUS_2                           12                            171
  CLUS_3                            7                             80
  CLUS_4                           13                            107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       21     12     15
  DEL PEAK  5(1Q42.11) WILD-TYPE    272    112    114
D30V4, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           21                            272
  CLUS_2                           12                            112
  CLUS_3                           15                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       15     16     20
  DEL PEAK  5(1Q42.11) WILD-TYPE    147    202    177
D30V5, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           15                            147
  CLUS_2                           16                            202
  CLUS_3                           20                            177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       10      8      5
  DEL PEAK  5(1Q42.11) WILD-TYPE     79    100     73
D30V6, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           10                             79
  CLUS_2                            8                            100
  CLUS_3                            5                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(1Q42.11) MUTATED        6      8      1      7
  DEL PEAK  5(1Q42.11) WILD-TYPE     48     50     43     38
D30V7, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            8                             50
  CLUS_3                            1                             43
  CLUS_4                            7                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED       11     10      1
  DEL PEAK  5(1Q42.11) WILD-TYPE     58     66     55
D30V8, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                           11                             58
  CLUS_2                           10                             66
  CLUS_3                            1                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED        5      5      2
  DEL PEAK  5(1Q42.11) WILD-TYPE     39     62     34
D30V9, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            5                             62
  CLUS_3                            2                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(1Q42.11) MUTATED        5      6      1
  DEL PEAK  5(1Q42.11) WILD-TYPE     25     86     24
D30V10, multiclass
        clus
vv       DEL PEAK  5(1Q42.11) MUTATED DEL PEAK  5(1Q42.11) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            6                             86
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        7      4      9      8
  DEL PEAK  6(1Q44) WILD-TYPE    140     92    143    105
D31V1, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                         140
  CLUS_2                         4                          92
  CLUS_3                         9                         143
  CLUS_4                         8                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        7      9      5      7
  DEL PEAK  6(1Q44) WILD-TYPE    141     93     95    151
D31V2, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         7                         141
  CLUS_2                         9                          93
  CLUS_3                         5                          95
  CLUS_4                         7                         151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        8     14      6      6
  DEL PEAK  6(1Q44) WILD-TYPE    148    169     81    114
D31V3, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         8                         148
  CLUS_2                        14                         169
  CLUS_3                         6                          81
  CLUS_4                         6                         114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED       15      7     12
  DEL PEAK  6(1Q44) WILD-TYPE    278    117    117
D31V4, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        15                         278
  CLUS_2                         7                         117
  CLUS_3                        12                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        6     13     16
  DEL PEAK  6(1Q44) WILD-TYPE    156    205    181
D31V5, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         6                         156
  CLUS_2                        13                         205
  CLUS_3                        16                         181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        4      6      4
  DEL PEAK  6(1Q44) WILD-TYPE     85    102     74
D31V6, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          85
  CLUS_2                         6                         102
  CLUS_3                         4                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(1Q44) MUTATED        3      6      2      4
  DEL PEAK  6(1Q44) WILD-TYPE     51     52     42     41
D31V7, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         3                          51
  CLUS_2                         6                          52
  CLUS_3                         2                          42
  CLUS_4                         4                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        6      7      2
  DEL PEAK  6(1Q44) WILD-TYPE     63     69     54
D31V8, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         6                          63
  CLUS_2                         7                          69
  CLUS_3                         2                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        4      3      3
  DEL PEAK  6(1Q44) WILD-TYPE     40     64     33
D31V9, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          40
  CLUS_2                         3                          64
  CLUS_3                         3                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(1Q44) MUTATED        4      5      1
  DEL PEAK  6(1Q44) WILD-TYPE     26     87     24
D31V10, multiclass
        clus
vv       DEL PEAK  6(1Q44) MUTATED DEL PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                         5                          87
  CLUS_3                         1                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  7(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        9     17      8      7
  DEL PEAK  7(2Q22.1) WILD-TYPE    138     79    144    106
D32V1, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           9                           138
  CLUS_2                          17                            79
  CLUS_3                           8                           144
  CLUS_4                           7                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        9     16      5     11
  DEL PEAK  7(2Q22.1) WILD-TYPE    139     86     95    147
D32V2, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           9                           139
  CLUS_2                          16                            86
  CLUS_3                           5                            95
  CLUS_4                          11                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED       10     18      8      6
  DEL PEAK  7(2Q22.1) WILD-TYPE    146    165     79    114
D32V3, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          10                           146
  CLUS_2                          18                           165
  CLUS_3                           8                            79
  CLUS_4                           6                           114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       23      7     12
  DEL PEAK  7(2Q22.1) WILD-TYPE    270    117    117
D32V4, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          23                           270
  CLUS_2                           7                           117
  CLUS_3                          12                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED       29      6     12
  DEL PEAK  7(2Q22.1) WILD-TYPE    133    212    185
D32V5, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                          29                           133
  CLUS_2                           6                           212
  CLUS_3                          12                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        5     11      8
  DEL PEAK  7(2Q22.1) WILD-TYPE     84     97     70
D32V6, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          11                            97
  CLUS_3                           8                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(2Q22.1) MUTATED        3      2      3      5
  DEL PEAK  7(2Q22.1) WILD-TYPE     51     56     41     40
D32V7, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           3                            51
  CLUS_2                           2                            56
  CLUS_3                           3                            41
  CLUS_4                           5                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        7      3      3
  DEL PEAK  7(2Q22.1) WILD-TYPE     62     73     53
D32V8, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           7                            62
  CLUS_2                           3                            73
  CLUS_3                           3                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        6      4      1
  DEL PEAK  7(2Q22.1) WILD-TYPE     38     63     35
D32V9, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                           4                            63
  CLUS_3                           1                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(2Q22.1) MUTATED        4      6      1
  DEL PEAK  7(2Q22.1) WILD-TYPE     26     86     24
D32V10, multiclass
        clus
vv       DEL PEAK  7(2Q22.1) MUTATED DEL PEAK  7(2Q22.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           6                            86
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  8(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       12     16     11     10
  DEL PEAK  8(2Q37.1) WILD-TYPE    135     80    141    103
D33V1, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          12                           135
  CLUS_2                          16                            80
  CLUS_3                          11                           141
  CLUS_4                          10                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       10     20      7     12
  DEL PEAK  8(2Q37.1) WILD-TYPE    138     82     93    146
D33V2, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          20                            82
  CLUS_3                           7                            93
  CLUS_4                          12                           146
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED       10     22     10     11
  DEL PEAK  8(2Q37.1) WILD-TYPE    146    161     77    109
D33V3, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          10                           146
  CLUS_2                          22                           161
  CLUS_3                          10                            77
  CLUS_4                          11                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       30     10     13
  DEL PEAK  8(2Q37.1) WILD-TYPE    263    114    116
D33V4, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          30                           263
  CLUS_2                          10                           114
  CLUS_3                          13                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED       22     12     21
  DEL PEAK  8(2Q37.1) WILD-TYPE    140    206    176
D33V5, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                          22                           140
  CLUS_2                          12                           206
  CLUS_3                          21                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED        5     14      8
  DEL PEAK  8(2Q37.1) WILD-TYPE     84     94     70
D33V6, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          14                            94
  CLUS_3                           8                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(2Q37.1) MUTATED        6      4      3      5
  DEL PEAK  8(2Q37.1) WILD-TYPE     48     54     41     40
D33V7, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           6                            48
  CLUS_2                           4                            54
  CLUS_3                           3                            41
  CLUS_4                           5                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED        9      4      5
  DEL PEAK  8(2Q37.1) WILD-TYPE     60     72     51
D33V8, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           9                            60
  CLUS_2                           4                            72
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED        6      4      1
  DEL PEAK  8(2Q37.1) WILD-TYPE     38     63     35
D33V9, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                           4                            63
  CLUS_3                           1                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(2Q37.1) MUTATED        5      6      0
  DEL PEAK  8(2Q37.1) WILD-TYPE     25     86     25
D33V10, multiclass
        clus
vv       DEL PEAK  8(2Q37.1) MUTATED DEL PEAK  8(2Q37.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           6                            86
  CLUS_3                           0                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  9(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED        9     13     16     12
  DEL PEAK  9(3P21.1) WILD-TYPE    138     83    136    101
D34V1, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           9                           138
  CLUS_2                          13                            83
  CLUS_3                          16                           136
  CLUS_4                          12                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED       10     16      8     16
  DEL PEAK  9(3P21.1) WILD-TYPE    138     86     92    142
D34V2, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          10                           138
  CLUS_2                          16                            86
  CLUS_3                           8                            92
  CLUS_4                          16                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED       15     21      6     10
  DEL PEAK  9(3P21.1) WILD-TYPE    141    162     81    110
D34V3, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          15                           141
  CLUS_2                          21                           162
  CLUS_3                           6                            81
  CLUS_4                          10                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED       29     14      9
  DEL PEAK  9(3P21.1) WILD-TYPE    264    110    120
D34V4, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          29                           264
  CLUS_2                          14                           110
  CLUS_3                           9                           120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED       25      7     21
  DEL PEAK  9(3P21.1) WILD-TYPE    137    211    176
D34V5, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                          25                           137
  CLUS_2                           7                           211
  CLUS_3                          21                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        8      6     13
  DEL PEAK  9(3P21.1) WILD-TYPE     81    102     65
D34V6, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           8                            81
  CLUS_2                           6                           102
  CLUS_3                          13                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3P21.1) MUTATED        5      2      7      6
  DEL PEAK  9(3P21.1) WILD-TYPE     49     56     37     39
D34V7, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           2                            56
  CLUS_3                           7                            37
  CLUS_4                           6                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        6      8      6
  DEL PEAK  9(3P21.1) WILD-TYPE     63     68     50
D34V8, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           6                            63
  CLUS_2                           8                            68
  CLUS_3                           6                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        4      7      1
  DEL PEAK  9(3P21.1) WILD-TYPE     40     60     35
D34V9, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           4                            40
  CLUS_2                           7                            60
  CLUS_3                           1                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3P21.1) MUTATED        1     11      0
  DEL PEAK  9(3P21.1) WILD-TYPE     29     81     25
D34V10, multiclass
        clus
vv       DEL PEAK  9(3P21.1) MUTATED DEL PEAK  9(3P21.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                          11                            81
  CLUS_3                           0                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 10(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12      9     14     15
  DEL PEAK 10(3Q13.31) WILD-TYPE    135     87    138     98
D35V1, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            135
  CLUS_2                            9                             87
  CLUS_3                           14                            138
  CLUS_4                           15                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12     10      7     21
  DEL PEAK 10(3Q13.31) WILD-TYPE    136     92     93    137
D35V2, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            136
  CLUS_2                           10                             92
  CLUS_3                            7                             93
  CLUS_4                           21                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED       12     19      8     15
  DEL PEAK 10(3Q13.31) WILD-TYPE    144    164     79    105
D35V3, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                            144
  CLUS_2                           19                            164
  CLUS_3                            8                             79
  CLUS_4                           15                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       29     15     10
  DEL PEAK 10(3Q13.31) WILD-TYPE    264    109    119
D35V4, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           29                            264
  CLUS_2                           15                            109
  CLUS_3                           10                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       26      7     23
  DEL PEAK 10(3Q13.31) WILD-TYPE    136    211    174
D35V5, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           26                            136
  CLUS_2                            7                            211
  CLUS_3                           23                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED       12      5     12
  DEL PEAK 10(3Q13.31) WILD-TYPE     77    103     66
D35V6, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                           12                             77
  CLUS_2                            5                            103
  CLUS_3                           12                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(3Q13.31) MUTATED        6      5      4      4
  DEL PEAK 10(3Q13.31) WILD-TYPE     48     53     40     41
D35V7, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            6                             48
  CLUS_2                            5                             53
  CLUS_3                            4                             40
  CLUS_4                            4                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED        4     11      4
  DEL PEAK 10(3Q13.31) WILD-TYPE     65     65     52
D35V8, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            4                             65
  CLUS_2                           11                             65
  CLUS_3                            4                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED        3      5      2
  DEL PEAK 10(3Q13.31) WILD-TYPE     41     62     34
D35V9, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            3                             41
  CLUS_2                            5                             62
  CLUS_3                            2                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(3Q13.31) MUTATED        0      9      1
  DEL PEAK 10(3Q13.31) WILD-TYPE     30     83     24
D35V10, multiclass
        clus
vv       DEL PEAK 10(3Q13.31) MUTATED DEL PEAK 10(3Q13.31) WILD-TYPE
  CLUS_1                            0                             30
  CLUS_2                            9                             83
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 11(3Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q22.1) MUTATED       13      9     17     14
  DEL PEAK 11(3Q22.1) WILD-TYPE    134     87    135     99
D36V1, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          13                           134
  CLUS_2                           9                            87
  CLUS_3                          17                           135
  CLUS_4                          14                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q22.1) MUTATED       12     10     11     20
  DEL PEAK 11(3Q22.1) WILD-TYPE    136     92     89    138
D36V2, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          12                           136
  CLUS_2                          10                            92
  CLUS_3                          11                            89
  CLUS_4                          20                           138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q22.1) MUTATED       17     20      8     11
  DEL PEAK 11(3Q22.1) WILD-TYPE    139    163     79    109
D36V3, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          17                           139
  CLUS_2                          20                           163
  CLUS_3                           8                            79
  CLUS_4                          11                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q22.1) MUTATED       30     13     13
  DEL PEAK 11(3Q22.1) WILD-TYPE    263    111    116
D36V4, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          30                           263
  CLUS_2                          13                           111
  CLUS_3                          13                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q22.1) MUTATED       24      9     25
  DEL PEAK 11(3Q22.1) WILD-TYPE    138    209    172
D36V5, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          24                           138
  CLUS_2                           9                           209
  CLUS_3                          25                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q22.1) MUTATED       12      6     11
  DEL PEAK 11(3Q22.1) WILD-TYPE     77    102     67
D36V6, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                          12                            77
  CLUS_2                           6                           102
  CLUS_3                          11                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(3Q22.1) MUTATED        5      5      5      4
  DEL PEAK 11(3Q22.1) WILD-TYPE     49     53     39     41
D36V7, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           5                            49
  CLUS_2                           5                            53
  CLUS_3                           5                            39
  CLUS_4                           4                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q22.1) MUTATED        4     10      5
  DEL PEAK 11(3Q22.1) WILD-TYPE     65     66     51
D36V8, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                          10                            66
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q22.1) MUTATED        3      4      2
  DEL PEAK 11(3Q22.1) WILD-TYPE     41     63     34
D36V9, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           4                            63
  CLUS_3                           2                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(3Q22.1) MUTATED        0      8      1
  DEL PEAK 11(3Q22.1) WILD-TYPE     30     84     24
D36V10, multiclass
        clus
vv       DEL PEAK 11(3Q22.1) MUTATED DEL PEAK 11(3Q22.1) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                           8                            84
  CLUS_3                           1                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 12(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(3Q29) MUTATED        9     13     22     13
  DEL PEAK 12(3Q29) WILD-TYPE    138     83    130    100
D37V1, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         9                         138
  CLUS_2                        13                          83
  CLUS_3                        22                         130
  CLUS_4                        13                         100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(3Q29) MUTATED       10     12     14     21
  DEL PEAK 12(3Q29) WILD-TYPE    138     90     86    137
D37V2, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        10                         138
  CLUS_2                        12                          90
  CLUS_3                        14                          86
  CLUS_4                        21                         137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(3Q29) MUTATED       15     24      8     17
  DEL PEAK 12(3Q29) WILD-TYPE    141    159     79    103
D37V3, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        15                         141
  CLUS_2                        24                         159
  CLUS_3                         8                          79
  CLUS_4                        17                         103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q29) MUTATED       33     16     15
  DEL PEAK 12(3Q29) WILD-TYPE    260    108    114
D37V4, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        33                         260
  CLUS_2                        16                         108
  CLUS_3                        15                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q29) MUTATED       26     17     22
  DEL PEAK 12(3Q29) WILD-TYPE    136    201    175
D37V5, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                        26                         136
  CLUS_2                        17                         201
  CLUS_3                        22                         175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q29) MUTATED        7     12     12
  DEL PEAK 12(3Q29) WILD-TYPE     82     96     66
D37V6, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         7                          82
  CLUS_2                        12                          96
  CLUS_3                        12                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(3Q29) MUTATED        5      7      9      6
  DEL PEAK 12(3Q29) WILD-TYPE     49     51     35     39
D37V7, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                         7                          51
  CLUS_3                         9                          35
  CLUS_4                         6                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q29) MUTATED        4     13     10
  DEL PEAK 12(3Q29) WILD-TYPE     65     63     46
D37V8, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         4                          65
  CLUS_2                        13                          63
  CLUS_3                        10                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q29) MUTATED        7      9      5
  DEL PEAK 12(3Q29) WILD-TYPE     37     58     31
D37V9, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         7                          37
  CLUS_2                         9                          58
  CLUS_3                         5                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(3Q29) MUTATED        3     14      4
  DEL PEAK 12(3Q29) WILD-TYPE     27     78     21
D37V10, multiclass
        clus
vv       DEL PEAK 12(3Q29) MUTATED DEL PEAK 12(3Q29) WILD-TYPE
  CLUS_1                         3                          27
  CLUS_2                        14                          78
  CLUS_3                         4                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 13(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4P16.3) MUTATED       17     21     15     18
  DEL PEAK 13(4P16.3) WILD-TYPE    130     75    137     95
D38V1, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                          21                            75
  CLUS_3                          15                           137
  CLUS_4                          18                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4P16.3) MUTATED       19     25      7     20
  DEL PEAK 13(4P16.3) WILD-TYPE    129     77     93    138
D38V2, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          19                           129
  CLUS_2                          25                            77
  CLUS_3                           7                            93
  CLUS_4                          20                           138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4P16.3) MUTATED       18     32      9     16
  DEL PEAK 13(4P16.3) WILD-TYPE    138    151     78    104
D38V3, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          18                           138
  CLUS_2                          32                           151
  CLUS_3                           9                            78
  CLUS_4                          16                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       47     13     15
  DEL PEAK 13(4P16.3) WILD-TYPE    246    111    114
D38V4, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          47                           246
  CLUS_2                          13                           111
  CLUS_3                          15                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       35     20     23
  DEL PEAK 13(4P16.3) WILD-TYPE    127    198    174
D38V5, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          35                           127
  CLUS_2                          20                           198
  CLUS_3                          23                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED        2     13     18
  DEL PEAK 13(4P16.3) WILD-TYPE     87     95     60
D38V6, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           2                            87
  CLUS_2                          13                            95
  CLUS_3                          18                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(4P16.3) MUTATED        7      7      7      8
  DEL PEAK 13(4P16.3) WILD-TYPE     47     51     37     37
D38V7, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           7                            47
  CLUS_2                           7                            51
  CLUS_3                           7                            37
  CLUS_4                           8                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED       11      8     10
  DEL PEAK 13(4P16.3) WILD-TYPE     58     68     46
D38V8, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          11                            58
  CLUS_2                           8                            68
  CLUS_3                          10                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED        7      9      6
  DEL PEAK 13(4P16.3) WILD-TYPE     37     58     30
D38V9, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           7                            37
  CLUS_2                           9                            58
  CLUS_3                           6                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(4P16.3) MUTATED        5     14      3
  DEL PEAK 13(4P16.3) WILD-TYPE     25     78     22
D38V10, multiclass
        clus
vv       DEL PEAK 13(4P16.3) MUTATED DEL PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          14                            78
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 14(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q34.3) MUTATED       16     25     18     22
  DEL PEAK 14(4Q34.3) WILD-TYPE    131     71    134     91
D39V1, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          16                           131
  CLUS_2                          25                            71
  CLUS_3                          18                           134
  CLUS_4                          22                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q34.3) MUTATED       17     31     10     23
  DEL PEAK 14(4Q34.3) WILD-TYPE    131     71     90    135
D39V2, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                          31                            71
  CLUS_3                          10                            90
  CLUS_4                          23                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q34.3) MUTATED       17     39     13     18
  DEL PEAK 14(4Q34.3) WILD-TYPE    139    144     74    102
D39V3, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          17                           139
  CLUS_2                          39                           144
  CLUS_3                          13                            74
  CLUS_4                          18                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q34.3) MUTATED       55     13     19
  DEL PEAK 14(4Q34.3) WILD-TYPE    238    111    110
D39V4, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          55                           238
  CLUS_2                          13                           111
  CLUS_3                          19                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q34.3) MUTATED       47     20     26
  DEL PEAK 14(4Q34.3) WILD-TYPE    115    198    171
D39V5, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          47                           115
  CLUS_2                          20                           198
  CLUS_3                          26                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q34.3) MUTATED        7     18     20
  DEL PEAK 14(4Q34.3) WILD-TYPE     82     90     58
D39V6, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                          18                            90
  CLUS_3                          20                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(4Q34.3) MUTATED        4     14      8      9
  DEL PEAK 14(4Q34.3) WILD-TYPE     50     44     36     36
D39V7, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                          14                            44
  CLUS_3                           8                            36
  CLUS_4                           9                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q34.3) MUTATED       11     14     10
  DEL PEAK 14(4Q34.3) WILD-TYPE     58     62     46
D39V8, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          11                            58
  CLUS_2                          14                            62
  CLUS_3                          10                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q34.3) MUTATED       13      9      8
  DEL PEAK 14(4Q34.3) WILD-TYPE     31     58     28
D39V9, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                           9                            58
  CLUS_3                           8                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(4Q34.3) MUTATED        9     19      2
  DEL PEAK 14(4Q34.3) WILD-TYPE     21     73     23
D39V10, multiclass
        clus
vv       DEL PEAK 14(4Q34.3) MUTATED DEL PEAK 14(4Q34.3) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                          19                            73
  CLUS_3                           2                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 15(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q34) MUTATED        8     26     12     17
  DEL PEAK 15(5Q34) WILD-TYPE    139     70    140     96
D40V1, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                         8                         139
  CLUS_2                        26                          70
  CLUS_3                        12                         140
  CLUS_4                        17                          96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q34) MUTATED       10     31     11     11
  DEL PEAK 15(5Q34) WILD-TYPE    138     71     89    147
D40V2, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                        10                         138
  CLUS_2                        31                          71
  CLUS_3                        11                          89
  CLUS_4                        11                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q34) MUTATED        6     36      9     11
  DEL PEAK 15(5Q34) WILD-TYPE    150    147     78    109
D40V3, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                         6                         150
  CLUS_2                        36                         147
  CLUS_3                         9                          78
  CLUS_4                        11                         109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q34) MUTATED       42      5     15
  DEL PEAK 15(5Q34) WILD-TYPE    251    119    114
D40V4, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                        42                         251
  CLUS_2                         5                         119
  CLUS_3                        15                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q34) MUTATED       26     15     29
  DEL PEAK 15(5Q34) WILD-TYPE    136    203    168
D40V5, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                        26                         136
  CLUS_2                        15                         203
  CLUS_3                        29                         168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q34) MUTATED        2     11     22
  DEL PEAK 15(5Q34) WILD-TYPE     87     97     56
D40V6, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                         2                          87
  CLUS_2                        11                          97
  CLUS_3                        22                          56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q34) MUTATED        5      8      3      4
  DEL PEAK 15(5Q34) WILD-TYPE     49     50     41     41
D40V7, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                         5                          49
  CLUS_2                         8                          50
  CLUS_3                         3                          41
  CLUS_4                         4                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q34) MUTATED        7      9      4
  DEL PEAK 15(5Q34) WILD-TYPE     62     67     52
D40V8, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                         7                          62
  CLUS_2                         9                          67
  CLUS_3                         4                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q34) MUTATED       11      9      5
  DEL PEAK 15(5Q34) WILD-TYPE     33     58     31
D40V9, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                        11                          33
  CLUS_2                         9                          58
  CLUS_3                         5                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q34) MUTATED        9     13      3
  DEL PEAK 15(5Q34) WILD-TYPE     21     79     22
D40V10, multiclass
        clus
vv       DEL PEAK 15(5Q34) MUTATED DEL PEAK 15(5Q34) WILD-TYPE
  CLUS_1                         9                          21
  CLUS_2                        13                          79
  CLUS_3                         3                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 16(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       46     27     43     27
  DEL PEAK 16(6Q22.31) WILD-TYPE    101     69    109     86
D41V1, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           46                            101
  CLUS_2                           27                             69
  CLUS_3                           43                            109
  CLUS_4                           27                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       42     29     29     43
  DEL PEAK 16(6Q22.31) WILD-TYPE    106     73     71    115
D41V2, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           42                            106
  CLUS_2                           29                             73
  CLUS_3                           29                             71
  CLUS_4                           43                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       45     57     20     27
  DEL PEAK 16(6Q22.31) WILD-TYPE    111    126     67     93
D41V3, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           45                            111
  CLUS_2                           57                            126
  CLUS_3                           20                             67
  CLUS_4                           27                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       77     30     42
  DEL PEAK 16(6Q22.31) WILD-TYPE    216     94     87
D41V4, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           77                            216
  CLUS_2                           30                             94
  CLUS_3                           42                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       71     48     39
  DEL PEAK 16(6Q22.31) WILD-TYPE     91    170    158
D41V5, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           71                             91
  CLUS_2                           48                            170
  CLUS_3                           39                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       25     29     14
  DEL PEAK 16(6Q22.31) WILD-TYPE     64     79     64
D41V6, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           25                             64
  CLUS_2                           29                             79
  CLUS_3                           14                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q22.31) MUTATED       17     10     12     12
  DEL PEAK 16(6Q22.31) WILD-TYPE     37     48     32     33
D41V7, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           17                             37
  CLUS_2                           10                             48
  CLUS_3                           12                             32
  CLUS_4                           12                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       17     15     19
  DEL PEAK 16(6Q22.31) WILD-TYPE     52     61     37
D41V8, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           17                             52
  CLUS_2                           15                             61
  CLUS_3                           19                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED       14     26     13
  DEL PEAK 16(6Q22.31) WILD-TYPE     30     41     23
D41V9, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           26                             41
  CLUS_3                           13                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q22.31) MUTATED        6     37     10
  DEL PEAK 16(6Q22.31) WILD-TYPE     24     55     15
D41V10, multiclass
        clus
vv       DEL PEAK 16(6Q22.31) MUTATED DEL PEAK 16(6Q22.31) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           37                             55
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       48     30     51     31
  DEL PEAK 17(6Q26) WILD-TYPE     99     66    101     82
D42V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        48                          99
  CLUS_2                        30                          66
  CLUS_3                        51                         101
  CLUS_4                        31                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       46     28     33     53
  DEL PEAK 17(6Q26) WILD-TYPE    102     74     67    105
D42V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        46                         102
  CLUS_2                        28                          74
  CLUS_3                        33                          67
  CLUS_4                        53                         105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       50     64     24     33
  DEL PEAK 17(6Q26) WILD-TYPE    106    119     63     87
D42V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        50                         106
  CLUS_2                        64                         119
  CLUS_3                        24                          63
  CLUS_4                        33                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       86     41     44
  DEL PEAK 17(6Q26) WILD-TYPE    207     83     85
D42V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        86                         207
  CLUS_2                        41                          83
  CLUS_3                        44                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       67     66     46
  DEL PEAK 17(6Q26) WILD-TYPE     95    152    151
D42V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        67                          95
  CLUS_2                        66                         152
  CLUS_3                        46                         151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       32     37     14
  DEL PEAK 17(6Q26) WILD-TYPE     57     71     64
D42V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        32                          57
  CLUS_2                        37                          71
  CLUS_3                        14                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       22     11     18     17
  DEL PEAK 17(6Q26) WILD-TYPE     32     47     26     28
D42V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        22                          32
  CLUS_2                        11                          47
  CLUS_3                        18                          26
  CLUS_4                        17                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       23     22     23
  DEL PEAK 17(6Q26) WILD-TYPE     46     54     33
D42V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        23                          46
  CLUS_2                        22                          54
  CLUS_3                        23                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       15     26     15
  DEL PEAK 17(6Q26) WILD-TYPE     29     41     21
D42V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        15                          29
  CLUS_2                        26                          41
  CLUS_3                        15                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED        5     39     12
  DEL PEAK 17(6Q26) WILD-TYPE     25     53     13
D42V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                        39                          53
  CLUS_3                        12                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       23      9     16     11
  DEL PEAK 18(8P23.2) WILD-TYPE    124     87    136    102
D43V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          23                           124
  CLUS_2                           9                            87
  CLUS_3                          16                           136
  CLUS_4                          11                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       24     11      9     15
  DEL PEAK 18(8P23.2) WILD-TYPE    124     91     91    143
D43V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          24                           124
  CLUS_2                          11                            91
  CLUS_3                           9                            91
  CLUS_4                          15                           143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       25     19      6     14
  DEL PEAK 18(8P23.2) WILD-TYPE    131    164     81    106
D43V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          25                           131
  CLUS_2                          19                           164
  CLUS_3                           6                            81
  CLUS_4                          14                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       29     19     16
  DEL PEAK 18(8P23.2) WILD-TYPE    264    105    113
D43V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          29                           264
  CLUS_2                          19                           105
  CLUS_3                          16                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       22     21     23
  DEL PEAK 18(8P23.2) WILD-TYPE    140    197    174
D43V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          22                           140
  CLUS_2                          21                           197
  CLUS_3                          23                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       15     13      7
  DEL PEAK 18(8P23.2) WILD-TYPE     74     95     71
D43V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          15                            74
  CLUS_2                          13                            95
  CLUS_3                           7                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        4      6      3      4
  DEL PEAK 18(8P23.2) WILD-TYPE     50     52     41     41
D43V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           4                            50
  CLUS_2                           6                            52
  CLUS_3                           3                            41
  CLUS_4                           4                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        5      7      5
  DEL PEAK 18(8P23.2) WILD-TYPE     64     69     51
D43V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           5                            64
  CLUS_2                           7                            69
  CLUS_3                           5                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        3      8      3
  DEL PEAK 18(8P23.2) WILD-TYPE     41     59     33
D43V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                            41
  CLUS_2                           8                            59
  CLUS_3                           3                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        1     10      3
  DEL PEAK 18(8P23.2) WILD-TYPE     29     82     22
D43V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                          10                            82
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 19(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9P21.3) MUTATED      100     61    133     75
  DEL PEAK 19(9P21.3) WILD-TYPE     47     35     19     38
D44V1, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         100                            47
  CLUS_2                          61                            35
  CLUS_3                         133                            19
  CLUS_4                          75                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9P21.3) MUTATED      102     61     91    115
  DEL PEAK 19(9P21.3) WILD-TYPE     46     41      9     43
D44V2, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         102                            46
  CLUS_2                          61                            41
  CLUS_3                          91                             9
  CLUS_4                         115                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9P21.3) MUTATED      114    127     65     90
  DEL PEAK 19(9P21.3) WILD-TYPE     42     56     22     30
D44V3, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         114                            42
  CLUS_2                         127                            56
  CLUS_3                          65                            22
  CLUS_4                          90                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P21.3) MUTATED      199     96    101
  DEL PEAK 19(9P21.3) WILD-TYPE     94     28     28
D44V4, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         199                            94
  CLUS_2                          96                            28
  CLUS_3                         101                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P21.3) MUTATED      102    195    124
  DEL PEAK 19(9P21.3) WILD-TYPE     60     23     73
D44V5, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                         102                            60
  CLUS_2                         195                            23
  CLUS_3                         124                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P21.3) MUTATED       62     88     57
  DEL PEAK 19(9P21.3) WILD-TYPE     27     20     21
D44V6, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          62                            27
  CLUS_2                          88                            20
  CLUS_3                          57                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9P21.3) MUTATED       43     39     38     36
  DEL PEAK 19(9P21.3) WILD-TYPE     11     19      6      9
D44V7, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          43                            11
  CLUS_2                          39                            19
  CLUS_3                          38                             6
  CLUS_4                          36                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P21.3) MUTATED       54     52     50
  DEL PEAK 19(9P21.3) WILD-TYPE     15     24      6
D44V8, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          54                            15
  CLUS_2                          52                            24
  CLUS_3                          50                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P21.3) MUTATED       24     52     27
  DEL PEAK 19(9P21.3) WILD-TYPE     20     15      9
D44V9, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          52                            15
  CLUS_3                          27                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9P21.3) MUTATED       14     71     18
  DEL PEAK 19(9P21.3) WILD-TYPE     16     21      7
D44V10, multiclass
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          71                            21
  CLUS_3                          18                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 20(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9Q34.2) MUTATED       15      9     25     18
  DEL PEAK 20(9Q34.2) WILD-TYPE    132     87    127     95
D45V1, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          15                           132
  CLUS_2                           9                            87
  CLUS_3                          25                           127
  CLUS_4                          18                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9Q34.2) MUTATED       17      8     19     23
  DEL PEAK 20(9Q34.2) WILD-TYPE    131     94     81    135
D45V2, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          17                           131
  CLUS_2                           8                            94
  CLUS_3                          19                            81
  CLUS_4                          23                           135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9Q34.2) MUTATED       16     26     10     19
  DEL PEAK 20(9Q34.2) WILD-TYPE    140    157     77    101
D45V3, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          16                           140
  CLUS_2                          26                           157
  CLUS_3                          10                            77
  CLUS_4                          19                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED       32     21     18
  DEL PEAK 20(9Q34.2) WILD-TYPE    261    103    111
D45V4, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          32                           261
  CLUS_2                          21                           103
  CLUS_3                          18                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED       27     26     26
  DEL PEAK 20(9Q34.2) WILD-TYPE    135    192    171
D45V5, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          27                           135
  CLUS_2                          26                           192
  CLUS_3                          26                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED       14     14     12
  DEL PEAK 20(9Q34.2) WILD-TYPE     75     94     66
D45V6, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          14                            75
  CLUS_2                          14                            94
  CLUS_3                          12                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9Q34.2) MUTATED        9      3      3      4
  DEL PEAK 20(9Q34.2) WILD-TYPE     45     55     41     41
D45V7, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           9                            45
  CLUS_2                           3                            55
  CLUS_3                           3                            41
  CLUS_4                           4                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED        7      4      8
  DEL PEAK 20(9Q34.2) WILD-TYPE     62     72     48
D45V8, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           7                            62
  CLUS_2                           4                            72
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED        5     13      4
  DEL PEAK 20(9Q34.2) WILD-TYPE     39     54     32
D45V9, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           5                            39
  CLUS_2                          13                            54
  CLUS_3                           4                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED        2     17      3
  DEL PEAK 20(9Q34.2) WILD-TYPE     28     75     22
D45V10, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          17                            75
  CLUS_3                           3                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 21(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      129     63    134     82
  DEL PEAK 21(10P15.3) WILD-TYPE     18     33     18     31
D46V1, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          129                             18
  CLUS_2                           63                             33
  CLUS_3                          134                             18
  CLUS_4                           82                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      125     59     89    135
  DEL PEAK 21(10P15.3) WILD-TYPE     23     43     11     23
D46V2, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          125                             23
  CLUS_2                           59                             43
  CLUS_3                           89                             11
  CLUS_4                          135                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED      139    137     70     97
  DEL PEAK 21(10P15.3) WILD-TYPE     17     46     17     23
D46V3, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          139                             17
  CLUS_2                          137                             46
  CLUS_3                           70                             17
  CLUS_4                           97                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED      223    105    115
  DEL PEAK 21(10P15.3) WILD-TYPE     70     19     14
D46V4, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          223                             70
  CLUS_2                          105                             19
  CLUS_3                          115                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED      147    206    117
  DEL PEAK 21(10P15.3) WILD-TYPE     15     12     80
D46V5, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                          147                             15
  CLUS_2                          206                             12
  CLUS_3                          117                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED       78     97     45
  DEL PEAK 21(10P15.3) WILD-TYPE     11     11     33
D46V6, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           78                             11
  CLUS_2                           97                             11
  CLUS_3                           45                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10P15.3) MUTATED       48     41     42     37
  DEL PEAK 21(10P15.3) WILD-TYPE      6     17      2      8
D46V7, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           48                              6
  CLUS_2                           41                             17
  CLUS_3                           42                              2
  CLUS_4                           37                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED       60     55     53
  DEL PEAK 21(10P15.3) WILD-TYPE      9     21      3
D46V8, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           60                              9
  CLUS_2                           55                             21
  CLUS_3                           53                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED       33     59     35
  DEL PEAK 21(10P15.3) WILD-TYPE     11      8      1
D46V9, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           33                             11
  CLUS_2                           59                              8
  CLUS_3                           35                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10P15.3) MUTATED       19     83     25
  DEL PEAK 21(10P15.3) WILD-TYPE     11      9      0
D46V10, multiclass
        clus
vv       DEL PEAK 21(10P15.3) MUTATED DEL PEAK 21(10P15.3) WILD-TYPE
  CLUS_1                           19                             11
  CLUS_2                           83                              9
  CLUS_3                           25                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 22(10P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      131     65    135     79
  DEL PEAK 22(10P13) WILD-TYPE     16     31     17     34
D47V1, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        131                           16
  CLUS_2                         65                           31
  CLUS_3                        135                           17
  CLUS_4                         79                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      129     58     89    134
  DEL PEAK 22(10P13) WILD-TYPE     19     44     11     24
D47V2, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        129                           19
  CLUS_2                         58                           44
  CLUS_3                         89                           11
  CLUS_4                        134                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED      141    138     68     99
  DEL PEAK 22(10P13) WILD-TYPE     15     45     19     21
D47V3, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        141                           15
  CLUS_2                        138                           45
  CLUS_3                         68                           19
  CLUS_4                         99                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED      223    108    115
  DEL PEAK 22(10P13) WILD-TYPE     70     16     14
D47V4, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        223                           70
  CLUS_2                        108                           16
  CLUS_3                        115                           14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED      147    208    116
  DEL PEAK 22(10P13) WILD-TYPE     15     10     81
D47V5, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                        147                           15
  CLUS_2                        208                           10
  CLUS_3                        116                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED       78     96     44
  DEL PEAK 22(10P13) WILD-TYPE     11     12     34
D47V6, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         78                           11
  CLUS_2                         96                           12
  CLUS_3                         44                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(10P13) MUTATED       50     38     42     37
  DEL PEAK 22(10P13) WILD-TYPE      4     20      2      8
D47V7, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         50                            4
  CLUS_2                         38                           20
  CLUS_3                         42                            2
  CLUS_4                         37                            8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED       60     53     54
  DEL PEAK 22(10P13) WILD-TYPE      9     23      2
D47V8, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         60                            9
  CLUS_2                         53                           23
  CLUS_3                         54                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED       34     59     34
  DEL PEAK 22(10P13) WILD-TYPE     10      8      2
D47V9, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         34                           10
  CLUS_2                         59                            8
  CLUS_3                         34                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10P13) MUTATED       20     83     24
  DEL PEAK 22(10P13) WILD-TYPE     10      9      1
D47V10, multiclass
        clus
vv       DEL PEAK 22(10P13) MUTATED DEL PEAK 22(10P13) WILD-TYPE
  CLUS_1                         20                           10
  CLUS_2                         83                            9
  CLUS_3                         24                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 23(10P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P11.23) MUTATED      130     61    142     83
  DEL PEAK 23(10P11.23) WILD-TYPE     17     35     10     30
D48V1, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           130                              17
  CLUS_2                            61                              35
  CLUS_3                           142                              10
  CLUS_4                            83                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P11.23) MUTATED      127     60     93    136
  DEL PEAK 23(10P11.23) WILD-TYPE     21     42      7     22
D48V2, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           127                              21
  CLUS_2                            60                              42
  CLUS_3                            93                               7
  CLUS_4                           136                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P11.23) MUTATED      145    139     67     99
  DEL PEAK 23(10P11.23) WILD-TYPE     11     44     20     21
D48V3, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           145                              11
  CLUS_2                           139                              44
  CLUS_3                            67                              20
  CLUS_4                            99                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P11.23) MUTATED      223    106    121
  DEL PEAK 23(10P11.23) WILD-TYPE     70     18      8
D48V4, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           223                              70
  CLUS_2                           106                              18
  CLUS_3                           121                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P11.23) MUTATED      148    212    116
  DEL PEAK 23(10P11.23) WILD-TYPE     14      6     81
D48V5, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                           148                              14
  CLUS_2                           212                               6
  CLUS_3                           116                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P11.23) MUTATED       79     96     45
  DEL PEAK 23(10P11.23) WILD-TYPE     10     12     33
D48V6, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            79                              10
  CLUS_2                            96                              12
  CLUS_3                            45                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P11.23) MUTATED       50     40     42     38
  DEL PEAK 23(10P11.23) WILD-TYPE      4     18      2      7
D48V7, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            50                               4
  CLUS_2                            40                              18
  CLUS_3                            42                               2
  CLUS_4                            38                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P11.23) MUTATED       58     58     54
  DEL PEAK 23(10P11.23) WILD-TYPE     11     18      2
D48V8, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            58                              11
  CLUS_2                            58                              18
  CLUS_3                            54                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P11.23) MUTATED       34     61     34
  DEL PEAK 23(10P11.23) WILD-TYPE     10      6      2
D48V9, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            34                              10
  CLUS_2                            61                               6
  CLUS_3                            34                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P11.23) MUTATED       20     85     24
  DEL PEAK 23(10P11.23) WILD-TYPE     10      7      1
D48V10, multiclass
        clus
vv       DEL PEAK 23(10P11.23) MUTATED DEL PEAK 23(10P11.23) WILD-TYPE
  CLUS_1                            20                              10
  CLUS_2                            85                               7
  CLUS_3                            24                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED      136     75    147     91
  DEL PEAK 24(10Q23.31) WILD-TYPE     11     21      5     22
D49V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           136                              11
  CLUS_2                            75                              21
  CLUS_3                           147                               5
  CLUS_4                            91                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED      132     75     98    144
  DEL PEAK 24(10Q23.31) WILD-TYPE     16     27      2     14
D49V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           132                              16
  CLUS_2                            75                              27
  CLUS_3                            98                               2
  CLUS_4                           144                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED      148    158     72    107
  DEL PEAK 24(10Q23.31) WILD-TYPE      8     25     15     13
D49V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           148                               8
  CLUS_2                           158                              25
  CLUS_3                            72                              15
  CLUS_4                           107                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED      248    115    122
  DEL PEAK 24(10Q23.31) WILD-TYPE     45      9      7
D49V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           248                              45
  CLUS_2                           115                               9
  CLUS_3                           122                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED      154    216    144
  DEL PEAK 24(10Q23.31) WILD-TYPE      8      2     53
D49V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                           154                               8
  CLUS_2                           216                               2
  CLUS_3                           144                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       81    103     60
  DEL PEAK 24(10Q23.31) WILD-TYPE      8      5     18
D49V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            81                               8
  CLUS_2                           103                               5
  CLUS_3                            60                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       50     45     42     43
  DEL PEAK 24(10Q23.31) WILD-TYPE      4     13      2      2
D49V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            50                               4
  CLUS_2                            45                              13
  CLUS_3                            42                               2
  CLUS_4                            43                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       62     64     54
  DEL PEAK 24(10Q23.31) WILD-TYPE      7     12      2
D49V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            62                               7
  CLUS_2                            64                              12
  CLUS_3                            54                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       38     63     33
  DEL PEAK 24(10Q23.31) WILD-TYPE      6      4      3
D49V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            38                               6
  CLUS_2                            63                               4
  CLUS_3                            33                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       24     87     23
  DEL PEAK 24(10Q23.31) WILD-TYPE      6      5      2
D49V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            24                               6
  CLUS_2                            87                               5
  CLUS_3                            23                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 25(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED      136     75    148     91
  DEL PEAK 25(10Q26.3) WILD-TYPE     11     21      4     22
D50V1, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          136                             11
  CLUS_2                           75                             21
  CLUS_3                          148                              4
  CLUS_4                           91                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED      132     77     97    144
  DEL PEAK 25(10Q26.3) WILD-TYPE     16     25      3     14
D50V2, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          132                             16
  CLUS_2                           77                             25
  CLUS_3                           97                              3
  CLUS_4                          144                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED      146    162     71    107
  DEL PEAK 25(10Q26.3) WILD-TYPE     10     21     16     13
D50V3, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          146                             10
  CLUS_2                          162                             21
  CLUS_3                           71                             16
  CLUS_4                          107                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED      252    109    125
  DEL PEAK 25(10Q26.3) WILD-TYPE     41     15      4
D50V4, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          252                             41
  CLUS_2                          109                             15
  CLUS_3                          125                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED      151    216    148
  DEL PEAK 25(10Q26.3) WILD-TYPE     11      2     49
D50V5, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                          151                             11
  CLUS_2                          216                              2
  CLUS_3                          148                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       79    105     58
  DEL PEAK 25(10Q26.3) WILD-TYPE     10      3     20
D50V6, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           79                             10
  CLUS_2                          105                              3
  CLUS_3                           58                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q26.3) MUTATED       48     49     43     42
  DEL PEAK 25(10Q26.3) WILD-TYPE      6      9      1      3
D50V7, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           48                              6
  CLUS_2                           49                              9
  CLUS_3                           43                              1
  CLUS_4                           42                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       60     67     55
  DEL PEAK 25(10Q26.3) WILD-TYPE      9      9      1
D50V8, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           60                              9
  CLUS_2                           67                              9
  CLUS_3                           55                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       38     61     35
  DEL PEAK 25(10Q26.3) WILD-TYPE      6      6      1
D50V9, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           38                              6
  CLUS_2                           61                              6
  CLUS_3                           35                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q26.3) MUTATED       24     85     25
  DEL PEAK 25(10Q26.3) WILD-TYPE      6      7      0
D50V10, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           85                              7
  CLUS_3                           25                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 26(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       32     42     13     31
  DEL PEAK 26(11P15.5) WILD-TYPE    115     54    139     82
D51V1, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           32                            115
  CLUS_2                           42                             54
  CLUS_3                           13                            139
  CLUS_4                           31                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       30     48      9     31
  DEL PEAK 26(11P15.5) WILD-TYPE    118     54     91    127
D51V2, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           30                            118
  CLUS_2                           48                             54
  CLUS_3                            9                             91
  CLUS_4                           31                            127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       30     52     20     23
  DEL PEAK 26(11P15.5) WILD-TYPE    126    131     67     97
D51V3, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           30                            126
  CLUS_2                           52                            131
  CLUS_3                           20                             67
  CLUS_4                           23                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       84     23     18
  DEL PEAK 26(11P15.5) WILD-TYPE    209    101    111
D51V4, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           84                            209
  CLUS_2                           23                            101
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       64     13     52
  DEL PEAK 26(11P15.5) WILD-TYPE     98    205    145
D51V5, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           64                             98
  CLUS_2                           13                            205
  CLUS_3                           52                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       13     20     36
  DEL PEAK 26(11P15.5) WILD-TYPE     76     88     42
D51V6, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           20                             88
  CLUS_3                           36                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11P15.5) MUTATED       10     18      6      8
  DEL PEAK 26(11P15.5) WILD-TYPE     44     40     38     37
D51V7, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           18                             40
  CLUS_3                            6                             38
  CLUS_4                            8                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       11     23      8
  DEL PEAK 26(11P15.5) WILD-TYPE     58     53     48
D51V8, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           11                             58
  CLUS_2                           23                             53
  CLUS_3                            8                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       18     11      4
  DEL PEAK 26(11P15.5) WILD-TYPE     26     56     32
D51V9, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           18                             26
  CLUS_2                           11                             56
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11P15.5) MUTATED       14     17      2
  DEL PEAK 26(11P15.5) WILD-TYPE     16     75     23
D51V10, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           17                             75
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 27(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       27     35     10     23
  DEL PEAK 27(11P11.2) WILD-TYPE    120     61    142     90
D52V1, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           27                            120
  CLUS_2                           35                             61
  CLUS_3                           10                            142
  CLUS_4                           23                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       27     36      5     27
  DEL PEAK 27(11P11.2) WILD-TYPE    121     66     95    131
D52V2, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           27                            121
  CLUS_2                           36                             66
  CLUS_3                            5                             95
  CLUS_4                           27                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       24     38     14     25
  DEL PEAK 27(11P11.2) WILD-TYPE    132    145     73     95
D52V3, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           24                            132
  CLUS_2                           38                            145
  CLUS_3                           14                             73
  CLUS_4                           25                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       65     22     14
  DEL PEAK 27(11P11.2) WILD-TYPE    228    102    115
D52V4, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           65                            228
  CLUS_2                           22                            102
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       58     11     36
  DEL PEAK 27(11P11.2) WILD-TYPE    104    207    161
D52V5, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           58                            104
  CLUS_2                           11                            207
  CLUS_3                           36                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       15     17     28
  DEL PEAK 27(11P11.2) WILD-TYPE     74     91     50
D52V6, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           15                             74
  CLUS_2                           17                             91
  CLUS_3                           28                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(11P11.2) MUTATED       10     10      7      6
  DEL PEAK 27(11P11.2) WILD-TYPE     44     48     37     39
D52V7, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                           10                             48
  CLUS_3                            7                             37
  CLUS_4                            6                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       10     15      8
  DEL PEAK 27(11P11.2) WILD-TYPE     59     61     48
D52V8, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           10                             59
  CLUS_2                           15                             61
  CLUS_3                            8                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED       12     11      3
  DEL PEAK 27(11P11.2) WILD-TYPE     32     56     33
D52V9, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                           12                             32
  CLUS_2                           11                             56
  CLUS_3                            3                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(11P11.2) MUTATED        9     15      2
  DEL PEAK 27(11P11.2) WILD-TYPE     21     77     23
D52V10, multiclass
        clus
vv       DEL PEAK 27(11P11.2) MUTATED DEL PEAK 27(11P11.2) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           15                             77
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 28(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       30     33     12     13
  DEL PEAK 28(11Q14.1) WILD-TYPE    117     63    140    100
D53V1, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           30                            117
  CLUS_2                           33                             63
  CLUS_3                           12                            140
  CLUS_4                           13                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       30     27      6     25
  DEL PEAK 28(11Q14.1) WILD-TYPE    118     75     94    133
D53V2, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           30                            118
  CLUS_2                           27                             75
  CLUS_3                            6                             94
  CLUS_4                           25                            133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED       25     30     16     23
  DEL PEAK 28(11Q14.1) WILD-TYPE    131    153     71     97
D53V3, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           25                            131
  CLUS_2                           30                            153
  CLUS_3                           16                             71
  CLUS_4                           23                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       54     25     15
  DEL PEAK 28(11Q14.1) WILD-TYPE    239     99    114
D53V4, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           54                            239
  CLUS_2                           25                             99
  CLUS_3                           15                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       63     10     23
  DEL PEAK 28(11Q14.1) WILD-TYPE     99    208    174
D53V5, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           63                             99
  CLUS_2                           10                            208
  CLUS_3                           23                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       14     19     19
  DEL PEAK 28(11Q14.1) WILD-TYPE     75     89     59
D53V6, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           14                             75
  CLUS_2                           19                             89
  CLUS_3                           19                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(11Q14.1) MUTATED        7      6      6      8
  DEL PEAK 28(11Q14.1) WILD-TYPE     47     52     38     37
D53V7, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            7                             47
  CLUS_2                            6                             52
  CLUS_3                            6                             38
  CLUS_4                            8                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED       11     10      6
  DEL PEAK 28(11Q14.1) WILD-TYPE     58     66     50
D53V8, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           11                             58
  CLUS_2                           10                             66
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED        9     13      2
  DEL PEAK 28(11Q14.1) WILD-TYPE     35     54     34
D53V9, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           13                             54
  CLUS_3                            2                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(11Q14.1) MUTATED        6     17      1
  DEL PEAK 28(11Q14.1) WILD-TYPE     24     75     24
D53V10, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           17                             75
  CLUS_3                            1                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 29(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED       18     17     11     18
  DEL PEAK 29(12P13.1) WILD-TYPE    129     79    141     95
D54V1, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           18                            129
  CLUS_2                           17                             79
  CLUS_3                           11                            141
  CLUS_4                           18                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED       17     20      5     22
  DEL PEAK 29(12P13.1) WILD-TYPE    131     82     95    136
D54V2, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           17                            131
  CLUS_2                           20                             82
  CLUS_3                            5                             95
  CLUS_4                           22                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED       20     26     15     10
  DEL PEAK 29(12P13.1) WILD-TYPE    136    157     72    110
D54V3, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           20                            136
  CLUS_2                           26                            157
  CLUS_3                           15                             72
  CLUS_4                           10                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED       45     12     14
  DEL PEAK 29(12P13.1) WILD-TYPE    248    112    115
D54V4, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           45                            248
  CLUS_2                           12                            112
  CLUS_3                           14                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED       25     19     28
  DEL PEAK 29(12P13.1) WILD-TYPE    137    199    169
D54V5, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                           25                            137
  CLUS_2                           19                            199
  CLUS_3                           28                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        8     13     15
  DEL PEAK 29(12P13.1) WILD-TYPE     81     95     63
D54V6, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            8                             81
  CLUS_2                           13                             95
  CLUS_3                           15                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(12P13.1) MUTATED        4      8      6      6
  DEL PEAK 29(12P13.1) WILD-TYPE     50     50     38     39
D54V7, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                            8                             50
  CLUS_3                            6                             38
  CLUS_4                            6                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        6     11      7
  DEL PEAK 29(12P13.1) WILD-TYPE     63     65     49
D54V8, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            6                             63
  CLUS_2                           11                             65
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        5      7      4
  DEL PEAK 29(12P13.1) WILD-TYPE     39     60     32
D54V9, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                            7                             60
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(12P13.1) MUTATED        3     11      2
  DEL PEAK 29(12P13.1) WILD-TYPE     27     81     23
D54V10, multiclass
        clus
vv       DEL PEAK 29(12P13.1) MUTATED DEL PEAK 29(12P13.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           11                             81
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 30(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED       18     17     11     22
  DEL PEAK 30(12Q12) WILD-TYPE    129     79    141     91
D55V1, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         18                          129
  CLUS_2                         17                           79
  CLUS_3                         11                          141
  CLUS_4                         22                           91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED       19     26      6     17
  DEL PEAK 30(12Q12) WILD-TYPE    129     76     94    141
D55V2, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         19                          129
  CLUS_2                         26                           76
  CLUS_3                          6                           94
  CLUS_4                         17                          141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED       17     32     11     13
  DEL PEAK 30(12Q12) WILD-TYPE    139    151     76    107
D55V3, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         17                          139
  CLUS_2                         32                          151
  CLUS_3                         11                           76
  CLUS_4                         13                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED       47     10     16
  DEL PEAK 30(12Q12) WILD-TYPE    246    114    113
D55V4, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         47                          246
  CLUS_2                         10                          114
  CLUS_3                         16                          113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED       35     15     27
  DEL PEAK 30(12Q12) WILD-TYPE    127    203    170
D55V5, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         35                          127
  CLUS_2                         15                          203
  CLUS_3                         27                          170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        7     14     16
  DEL PEAK 30(12Q12) WILD-TYPE     82     94     62
D55V6, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          7                           82
  CLUS_2                         14                           94
  CLUS_3                         16                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(12Q12) MUTATED        4     11      6      2
  DEL PEAK 30(12Q12) WILD-TYPE     50     47     38     43
D55V7, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          4                           50
  CLUS_2                         11                           47
  CLUS_3                          6                           38
  CLUS_4                          2                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        5     12      6
  DEL PEAK 30(12Q12) WILD-TYPE     64     64     50
D55V8, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          5                           64
  CLUS_2                         12                           64
  CLUS_3                          6                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        4      7      3
  DEL PEAK 30(12Q12) WILD-TYPE     40     60     33
D55V9, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          4                           40
  CLUS_2                          7                           60
  CLUS_3                          3                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(12Q12) MUTATED        3     10      1
  DEL PEAK 30(12Q12) WILD-TYPE     27     82     24
D55V10, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          3                           27
  CLUS_2                         10                           82
  CLUS_3                          1                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 31(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED       21     21      7     20
  DEL PEAK 31(12Q15) WILD-TYPE    126     75    145     93
D56V1, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         21                          126
  CLUS_2                         21                           75
  CLUS_3                          7                          145
  CLUS_4                         20                           93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED       20     22      4     23
  DEL PEAK 31(12Q15) WILD-TYPE    128     80     96    135
D56V2, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         20                          128
  CLUS_2                         22                           80
  CLUS_3                          4                           96
  CLUS_4                         23                          135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED       18     31     10     17
  DEL PEAK 31(12Q15) WILD-TYPE    138    152     77    103
D56V3, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         18                          138
  CLUS_2                         31                          152
  CLUS_3                         10                           77
  CLUS_4                         17                          103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED       45     13     18
  DEL PEAK 31(12Q15) WILD-TYPE    248    111    111
D56V4, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         45                          248
  CLUS_2                         13                          111
  CLUS_3                         18                          111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED       40     14     25
  DEL PEAK 31(12Q15) WILD-TYPE    122    204    172
D56V5, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                         40                          122
  CLUS_2                         14                          204
  CLUS_3                         25                          172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED        9     14     15
  DEL PEAK 31(12Q15) WILD-TYPE     80     94     63
D56V6, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          9                           80
  CLUS_2                         14                           94
  CLUS_3                         15                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(12Q15) MUTATED        6      9      4      3
  DEL PEAK 31(12Q15) WILD-TYPE     48     49     40     42
D56V7, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          6                           48
  CLUS_2                          9                           49
  CLUS_3                          4                           40
  CLUS_4                          3                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED        7     10      5
  DEL PEAK 31(12Q15) WILD-TYPE     62     66     51
D56V8, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          7                           62
  CLUS_2                         10                           66
  CLUS_3                          5                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED        6      8      3
  DEL PEAK 31(12Q15) WILD-TYPE     38     59     33
D56V9, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          6                           38
  CLUS_2                          8                           59
  CLUS_3                          3                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(12Q15) MUTATED        5     11      1
  DEL PEAK 31(12Q15) WILD-TYPE     25     81     24
D56V10, multiclass
        clus
vv       DEL PEAK 31(12Q15) MUTATED DEL PEAK 31(12Q15) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         11                           81
  CLUS_3                          1                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 32(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       81     45     36     53
  DEL PEAK 32(13Q14.2) WILD-TYPE     66     51    116     60
D57V1, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           81                             66
  CLUS_2                           45                             51
  CLUS_3                           36                            116
  CLUS_4                           53                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       68     50     21     76
  DEL PEAK 32(13Q14.2) WILD-TYPE     80     52     79     82
D57V2, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           50                             52
  CLUS_3                           21                             79
  CLUS_4                           76                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       70     78     39     42
  DEL PEAK 32(13Q14.2) WILD-TYPE     86    105     48     78
D57V3, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           70                             86
  CLUS_2                           78                            105
  CLUS_3                           39                             48
  CLUS_4                           42                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED      132     52     45
  DEL PEAK 32(13Q14.2) WILD-TYPE    161     72     84
D57V4, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                          132                            161
  CLUS_2                           52                             72
  CLUS_3                           45                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED      123     37     81
  DEL PEAK 32(13Q14.2) WILD-TYPE     39    181    116
D57V5, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                          123                             39
  CLUS_2                           37                            181
  CLUS_3                           81                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       44     34     45
  DEL PEAK 32(13Q14.2) WILD-TYPE     45     74     33
D57V6, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           44                             45
  CLUS_2                           34                             74
  CLUS_3                           45                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(13Q14.2) MUTATED       22     24     15     19
  DEL PEAK 32(13Q14.2) WILD-TYPE     32     34     29     26
D57V7, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           22                             32
  CLUS_2                           24                             34
  CLUS_3                           15                             29
  CLUS_4                           19                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       29     35     16
  DEL PEAK 32(13Q14.2) WILD-TYPE     40     41     40
D57V8, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           29                             40
  CLUS_2                           35                             41
  CLUS_3                           16                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       23     26     10
  DEL PEAK 32(13Q14.2) WILD-TYPE     21     41     26
D57V9, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           23                             21
  CLUS_2                           26                             41
  CLUS_3                           10                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(13Q14.2) MUTATED       14     40      5
  DEL PEAK 32(13Q14.2) WILD-TYPE     16     52     20
D57V10, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                           40                             52
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 33(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       81     40     34     50
  DEL PEAK 33(13Q22.1) WILD-TYPE     66     56    118     63
D58V1, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           81                             66
  CLUS_2                           40                             56
  CLUS_3                           34                            118
  CLUS_4                           50                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       68     45     21     71
  DEL PEAK 33(13Q22.1) WILD-TYPE     80     57     79     87
D58V2, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           45                             57
  CLUS_3                           21                             79
  CLUS_4                           71                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       65     77     33     41
  DEL PEAK 33(13Q22.1) WILD-TYPE     91    106     54     79
D58V3, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           65                             91
  CLUS_2                           77                            106
  CLUS_3                           33                             54
  CLUS_4                           41                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED      122     50     44
  DEL PEAK 33(13Q22.1) WILD-TYPE    171     74     85
D58V4, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                          122                            171
  CLUS_2                           50                             74
  CLUS_3                           44                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED      123     35     72
  DEL PEAK 33(13Q22.1) WILD-TYPE     39    183    125
D58V5, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                          123                             39
  CLUS_2                           35                            183
  CLUS_3                           72                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       41     38     40
  DEL PEAK 33(13Q22.1) WILD-TYPE     48     70     38
D58V6, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           41                             48
  CLUS_2                           38                             70
  CLUS_3                           40                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(13Q22.1) MUTATED       19     22     12     18
  DEL PEAK 33(13Q22.1) WILD-TYPE     35     36     32     27
D58V7, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           19                             35
  CLUS_2                           22                             36
  CLUS_3                           12                             32
  CLUS_4                           18                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       24     35     12
  DEL PEAK 33(13Q22.1) WILD-TYPE     45     41     44
D58V8, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           24                             45
  CLUS_2                           35                             41
  CLUS_3                           12                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       19     24     11
  DEL PEAK 33(13Q22.1) WILD-TYPE     25     43     25
D58V9, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           24                             43
  CLUS_3                           11                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(13Q22.1) MUTATED       10     38      6
  DEL PEAK 33(13Q22.1) WILD-TYPE     20     54     19
D58V10, multiclass
        clus
vv       DEL PEAK 33(13Q22.1) MUTATED DEL PEAK 33(13Q22.1) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           38                             54
  CLUS_3                            6                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 34(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       54     39     25     43
  DEL PEAK 34(14Q13.1) WILD-TYPE     93     57    127     70
D59V1, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           54                             93
  CLUS_2                           39                             57
  CLUS_3                           25                            127
  CLUS_4                           43                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       49     42     15     55
  DEL PEAK 34(14Q13.1) WILD-TYPE     99     60     85    103
D59V2, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           49                             99
  CLUS_2                           42                             60
  CLUS_3                           15                             85
  CLUS_4                           55                            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       44     64     27     37
  DEL PEAK 34(14Q13.1) WILD-TYPE    112    119     60     83
D59V3, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           44                            112
  CLUS_2                           64                            119
  CLUS_3                           27                             60
  CLUS_4                           37                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       96     35     41
  DEL PEAK 34(14Q13.1) WILD-TYPE    197     89     88
D59V4, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           96                            197
  CLUS_2                           35                             89
  CLUS_3                           41                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       91     29     58
  DEL PEAK 34(14Q13.1) WILD-TYPE     71    189    139
D59V5, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           91                             71
  CLUS_2                           29                            189
  CLUS_3                           58                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       30     25     31
  DEL PEAK 34(14Q13.1) WILD-TYPE     59     83     47
D59V6, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           30                             59
  CLUS_2                           25                             83
  CLUS_3                           31                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(14Q13.1) MUTATED       19     21     11     16
  DEL PEAK 34(14Q13.1) WILD-TYPE     35     37     33     29
D59V7, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           19                             35
  CLUS_2                           21                             37
  CLUS_3                           11                             33
  CLUS_4                           16                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       21     31     15
  DEL PEAK 34(14Q13.1) WILD-TYPE     48     45     41
D59V8, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           21                             48
  CLUS_2                           31                             45
  CLUS_3                           15                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       21     26     12
  DEL PEAK 34(14Q13.1) WILD-TYPE     23     41     24
D59V9, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           21                             23
  CLUS_2                           26                             41
  CLUS_3                           12                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(14Q13.1) MUTATED       11     38     10
  DEL PEAK 34(14Q13.1) WILD-TYPE     19     54     15
D59V10, multiclass
        clus
vv       DEL PEAK 34(14Q13.1) MUTATED DEL PEAK 34(14Q13.1) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                           38                             54
  CLUS_3                           10                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 35(14Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       51     43     22     45
  DEL PEAK 35(14Q24.2) WILD-TYPE     96     53    130     68
D60V1, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           51                             96
  CLUS_2                           43                             53
  CLUS_3                           22                            130
  CLUS_4                           45                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       48     46     14     53
  DEL PEAK 35(14Q24.2) WILD-TYPE    100     56     86    105
D60V2, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           48                            100
  CLUS_2                           46                             56
  CLUS_3                           14                             86
  CLUS_4                           53                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       38     69     24     36
  DEL PEAK 35(14Q24.2) WILD-TYPE    118    114     63     84
D60V3, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           38                            118
  CLUS_2                           69                            114
  CLUS_3                           24                             63
  CLUS_4                           36                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED      100     32     35
  DEL PEAK 35(14Q24.2) WILD-TYPE    193     92     94
D60V4, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                          100                            193
  CLUS_2                           32                             92
  CLUS_3                           35                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       91     21     61
  DEL PEAK 35(14Q24.2) WILD-TYPE     71    197    136
D60V5, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           91                             71
  CLUS_2                           21                            197
  CLUS_3                           61                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       27     25     36
  DEL PEAK 35(14Q24.2) WILD-TYPE     62     83     42
D60V6, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           27                             62
  CLUS_2                           25                             83
  CLUS_3                           36                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(14Q24.2) MUTATED       18     19     10     11
  DEL PEAK 35(14Q24.2) WILD-TYPE     36     39     34     34
D60V7, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           18                             36
  CLUS_2                           19                             39
  CLUS_3                           10                             34
  CLUS_4                           11                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       18     29     11
  DEL PEAK 35(14Q24.2) WILD-TYPE     51     47     45
D60V8, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           18                             51
  CLUS_2                           29                             47
  CLUS_3                           11                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       22     22     10
  DEL PEAK 35(14Q24.2) WILD-TYPE     22     45     26
D60V9, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           22                             22
  CLUS_2                           22                             45
  CLUS_3                           10                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(14Q24.2) MUTATED       12     33      9
  DEL PEAK 35(14Q24.2) WILD-TYPE     18     59     16
D60V10, multiclass
        clus
vv       DEL PEAK 35(14Q24.2) MUTATED DEL PEAK 35(14Q24.2) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                           33                             59
  CLUS_3                            9                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 36(15Q14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       36     37     23     42
  DEL PEAK 36(15Q14) WILD-TYPE    111     59    129     71
D61V1, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         36                          111
  CLUS_2                         37                           59
  CLUS_3                         23                          129
  CLUS_4                         42                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       34     47     12     45
  DEL PEAK 36(15Q14) WILD-TYPE    114     55     88    113
D61V2, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         34                          114
  CLUS_2                         47                           55
  CLUS_3                         12                           88
  CLUS_4                         45                          113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       35     66     22     20
  DEL PEAK 36(15Q14) WILD-TYPE    121    117     65    100
D61V3, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         35                          121
  CLUS_2                         66                          117
  CLUS_3                         22                           65
  CLUS_4                         20                          100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       95     15     33
  DEL PEAK 36(15Q14) WILD-TYPE    198    109     96
D61V4, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         95                          198
  CLUS_2                         15                          109
  CLUS_3                         33                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       72     38     44
  DEL PEAK 36(15Q14) WILD-TYPE     90    180    153
D61V5, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         72                           90
  CLUS_2                         38                          180
  CLUS_3                         44                          153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       21     25     34
  DEL PEAK 36(15Q14) WILD-TYPE     68     83     44
D61V6, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         21                           68
  CLUS_2                         25                           83
  CLUS_3                         34                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(15Q14) MUTATED       11     22      7     10
  DEL PEAK 36(15Q14) WILD-TYPE     43     36     37     35
D61V7, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         11                           43
  CLUS_2                         22                           36
  CLUS_3                          7                           37
  CLUS_4                         10                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       17     25      8
  DEL PEAK 36(15Q14) WILD-TYPE     52     51     48
D61V8, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         17                           52
  CLUS_2                         25                           51
  CLUS_3                          8                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       23     14      7
  DEL PEAK 36(15Q14) WILD-TYPE     21     53     29
D61V9, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         23                           21
  CLUS_2                         14                           53
  CLUS_3                          7                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(15Q14) MUTATED       15     25      4
  DEL PEAK 36(15Q14) WILD-TYPE     15     67     21
D61V10, multiclass
        clus
vv       DEL PEAK 36(15Q14) MUTATED DEL PEAK 36(15Q14) WILD-TYPE
  CLUS_1                         15                           15
  CLUS_2                         25                           67
  CLUS_3                          4                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 37(16P12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       26     20     18     20
  DEL PEAK 37(16P12.2) WILD-TYPE    121     76    134     93
D62V1, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           26                            121
  CLUS_2                           20                             76
  CLUS_3                           18                            134
  CLUS_4                           20                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       28     17     10     29
  DEL PEAK 37(16P12.2) WILD-TYPE    120     85     90    129
D62V2, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           17                             85
  CLUS_3                           10                             90
  CLUS_4                           29                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       27     23     17     21
  DEL PEAK 37(16P12.2) WILD-TYPE    129    160     70     99
D62V3, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           27                            129
  CLUS_2                           23                            160
  CLUS_3                           17                             70
  CLUS_4                           21                             99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       48     18     22
  DEL PEAK 37(16P12.2) WILD-TYPE    245    106    107
D62V4, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           48                            245
  CLUS_2                           18                            106
  CLUS_3                           22                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       30     27     35
  DEL PEAK 37(16P12.2) WILD-TYPE    132    191    162
D62V5, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           30                            132
  CLUS_2                           27                            191
  CLUS_3                           35                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED        7     18     15
  DEL PEAK 37(16P12.2) WILD-TYPE     82     90     63
D62V6, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            7                             82
  CLUS_2                           18                             90
  CLUS_3                           15                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16P12.2) MUTATED       13     12      5      9
  DEL PEAK 37(16P12.2) WILD-TYPE     41     46     39     36
D62V7, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                           12                             46
  CLUS_3                            5                             39
  CLUS_4                            9                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED       19     11      9
  DEL PEAK 37(16P12.2) WILD-TYPE     50     65     47
D62V8, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                           19                             50
  CLUS_2                           11                             65
  CLUS_3                            9                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED        6     16      7
  DEL PEAK 37(16P12.2) WILD-TYPE     38     51     29
D62V9, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           16                             51
  CLUS_3                            7                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16P12.2) MUTATED        3     20      6
  DEL PEAK 37(16P12.2) WILD-TYPE     27     72     19
D62V10, multiclass
        clus
vv       DEL PEAK 37(16P12.2) MUTATED DEL PEAK 37(16P12.2) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           20                             72
  CLUS_3                            6                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 38(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       31     24     16     19
  DEL PEAK 38(16Q23.1) WILD-TYPE    116     72    136     94
D63V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           31                            116
  CLUS_2                           24                             72
  CLUS_3                           16                            136
  CLUS_4                           19                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       28     17     13     32
  DEL PEAK 38(16Q23.1) WILD-TYPE    120     85     87    126
D63V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           17                             85
  CLUS_3                           13                             87
  CLUS_4                           32                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       31     32     14     20
  DEL PEAK 38(16Q23.1) WILD-TYPE    125    151     73    100
D63V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           31                            125
  CLUS_2                           32                            151
  CLUS_3                           14                             73
  CLUS_4                           20                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       50     20     27
  DEL PEAK 38(16Q23.1) WILD-TYPE    243    104    102
D63V4, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           50                            243
  CLUS_2                           20                            104
  CLUS_3                           27                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       39     27     35
  DEL PEAK 38(16Q23.1) WILD-TYPE    123    191    162
D63V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           39                            123
  CLUS_2                           27                            191
  CLUS_3                           35                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       13     18     14
  DEL PEAK 38(16Q23.1) WILD-TYPE     76     90     64
D63V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           18                             90
  CLUS_3                           14                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(16Q23.1) MUTATED       15      8      5     13
  DEL PEAK 38(16Q23.1) WILD-TYPE     39     50     39     32
D63V7, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           15                             39
  CLUS_2                            8                             50
  CLUS_3                            5                             39
  CLUS_4                           13                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED       23     11      7
  DEL PEAK 38(16Q23.1) WILD-TYPE     46     65     49
D63V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           23                             46
  CLUS_2                           11                             65
  CLUS_3                            7                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED        9     17      8
  DEL PEAK 38(16Q23.1) WILD-TYPE     35     50     28
D63V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           17                             50
  CLUS_3                            8                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(16Q23.1) MUTATED        6     21      7
  DEL PEAK 38(16Q23.1) WILD-TYPE     24     71     18
D63V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           21                             71
  CLUS_3                            7                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 39(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.2) MUTATED       28     23     13     13
  DEL PEAK 39(17P13.2) WILD-TYPE    119     73    139    100
D64V1, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           28                            119
  CLUS_2                           23                             73
  CLUS_3                           13                            139
  CLUS_4                           13                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.2) MUTATED       28     22     11     16
  DEL PEAK 39(17P13.2) WILD-TYPE    120     80     89    142
D64V2, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           28                            120
  CLUS_2                           22                             80
  CLUS_3                           11                             89
  CLUS_4                           16                            142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.2) MUTATED       24     28     14     16
  DEL PEAK 39(17P13.2) WILD-TYPE    132    155     73    104
D64V3, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           24                            132
  CLUS_2                           28                            155
  CLUS_3                           14                             73
  CLUS_4                           16                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.2) MUTATED       45     19     18
  DEL PEAK 39(17P13.2) WILD-TYPE    248    105    111
D64V4, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           45                            248
  CLUS_2                           19                            105
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.2) MUTATED       47      9     32
  DEL PEAK 39(17P13.2) WILD-TYPE    115    209    165
D64V5, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           47                            115
  CLUS_2                            9                            209
  CLUS_3                           32                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.2) MUTATED       17      9     12
  DEL PEAK 39(17P13.2) WILD-TYPE     72     99     66
D64V6, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           17                             72
  CLUS_2                            9                             99
  CLUS_3                           12                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P13.2) MUTATED       10      8      4      6
  DEL PEAK 39(17P13.2) WILD-TYPE     44     50     40     39
D64V7, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           10                             44
  CLUS_2                            8                             50
  CLUS_3                            4                             40
  CLUS_4                            6                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.2) MUTATED       12     11      5
  DEL PEAK 39(17P13.2) WILD-TYPE     57     65     51
D64V8, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                           12                             57
  CLUS_2                           11                             65
  CLUS_3                            5                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.2) MUTATED        6     14      5
  DEL PEAK 39(17P13.2) WILD-TYPE     38     53     31
D64V9, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           14                             53
  CLUS_3                            5                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P13.2) MUTATED        5     17      3
  DEL PEAK 39(17P13.2) WILD-TYPE     25     75     22
D64V10, multiclass
        clus
vv       DEL PEAK 39(17P13.2) MUTATED DEL PEAK 39(17P13.2) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           17                             75
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 40(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.1) MUTATED       32     27     13     16
  DEL PEAK 40(17P13.1) WILD-TYPE    115     69    139     97
D65V1, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           32                            115
  CLUS_2                           27                             69
  CLUS_3                           13                            139
  CLUS_4                           16                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.1) MUTATED       32     27      9     20
  DEL PEAK 40(17P13.1) WILD-TYPE    116     75     91    138
D65V2, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           32                            116
  CLUS_2                           27                             75
  CLUS_3                            9                             91
  CLUS_4                           20                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.1) MUTATED       27     35     15     16
  DEL PEAK 40(17P13.1) WILD-TYPE    129    148     72    104
D65V3, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           27                            129
  CLUS_2                           35                            148
  CLUS_3                           15                             72
  CLUS_4                           16                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.1) MUTATED       51     22     20
  DEL PEAK 40(17P13.1) WILD-TYPE    242    102    109
D65V4, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           51                            242
  CLUS_2                           22                            102
  CLUS_3                           20                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.1) MUTATED       55      8     35
  DEL PEAK 40(17P13.1) WILD-TYPE    107    210    162
D65V5, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           55                            107
  CLUS_2                            8                            210
  CLUS_3                           35                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.1) MUTATED       17     12     17
  DEL PEAK 40(17P13.1) WILD-TYPE     72     96     61
D65V6, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           17                             72
  CLUS_2                           12                             96
  CLUS_3                           17                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17P13.1) MUTATED       11     10      5      9
  DEL PEAK 40(17P13.1) WILD-TYPE     43     48     39     36
D65V7, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           11                             43
  CLUS_2                           10                             48
  CLUS_3                            5                             39
  CLUS_4                            9                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.1) MUTATED       15     14      6
  DEL PEAK 40(17P13.1) WILD-TYPE     54     62     50
D65V8, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                           14                             62
  CLUS_3                            6                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.1) MUTATED        9     15      5
  DEL PEAK 40(17P13.1) WILD-TYPE     35     52     31
D65V9, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           15                             52
  CLUS_3                            5                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17P13.1) MUTATED        6     20      3
  DEL PEAK 40(17P13.1) WILD-TYPE     24     72     22
D65V10, multiclass
        clus
vv       DEL PEAK 40(17P13.1) MUTATED DEL PEAK 40(17P13.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           20                             72
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 41(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       35      9     12      5
  DEL PEAK 41(17Q11.2) WILD-TYPE    112     87    140    108
D66V1, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           35                            112
  CLUS_2                            9                             87
  CLUS_3                           12                            140
  CLUS_4                            5                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       35      7      9     10
  DEL PEAK 41(17Q11.2) WILD-TYPE    113     95     91    148
D66V2, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           35                            113
  CLUS_2                            7                             95
  CLUS_3                            9                             91
  CLUS_4                           10                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       29     16      4     19
  DEL PEAK 41(17Q11.2) WILD-TYPE    127    167     83    101
D66V3, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           29                            127
  CLUS_2                           16                            167
  CLUS_3                            4                             83
  CLUS_4                           19                            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       26     24     18
  DEL PEAK 41(17Q11.2) WILD-TYPE    267    100    111
D66V4, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           26                            267
  CLUS_2                           24                            100
  CLUS_3                           18                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       33      9     30
  DEL PEAK 41(17Q11.2) WILD-TYPE    129    209    167
D66V5, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           33                            129
  CLUS_2                            9                            209
  CLUS_3                           30                            167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       18      4      4
  DEL PEAK 41(17Q11.2) WILD-TYPE     71    104     74
D66V6, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           18                             71
  CLUS_2                            4                            104
  CLUS_3                            4                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q11.2) MUTATED       13      2      3      6
  DEL PEAK 41(17Q11.2) WILD-TYPE     41     56     41     39
D66V7, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           13                             41
  CLUS_2                            2                             56
  CLUS_3                            3                             41
  CLUS_4                            6                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED       15      4      5
  DEL PEAK 41(17Q11.2) WILD-TYPE     54     72     51
D66V8, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                            4                             72
  CLUS_3                            5                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED        4     11      4
  DEL PEAK 41(17Q11.2) WILD-TYPE     40     56     32
D66V9, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            4                             40
  CLUS_2                           11                             56
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q11.2) MUTATED        2     14      3
  DEL PEAK 41(17Q11.2) WILD-TYPE     28     78     22
D66V10, multiclass
        clus
vv       DEL PEAK 41(17Q11.2) MUTATED DEL PEAK 41(17Q11.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           14                             78
  CLUS_3                            3                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 42(18Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.3) MUTATED       20     18     13     16
  DEL PEAK 42(18Q22.3) WILD-TYPE    127     78    139     97
D67V1, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           20                            127
  CLUS_2                           18                             78
  CLUS_3                           13                            139
  CLUS_4                           16                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.3) MUTATED       24     15      6     22
  DEL PEAK 42(18Q22.3) WILD-TYPE    124     87     94    136
D67V2, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                           15                             87
  CLUS_3                            6                             94
  CLUS_4                           22                            136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.3) MUTATED       24     28     10     15
  DEL PEAK 42(18Q22.3) WILD-TYPE    132    155     77    105
D67V3, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           24                            132
  CLUS_2                           28                            155
  CLUS_3                           10                             77
  CLUS_4                           15                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.3) MUTATED       38     16     23
  DEL PEAK 42(18Q22.3) WILD-TYPE    255    108    106
D67V4, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           38                            255
  CLUS_2                           16                            108
  CLUS_3                           23                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.3) MUTATED       36     15     31
  DEL PEAK 42(18Q22.3) WILD-TYPE    126    203    166
D67V5, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           36                            126
  CLUS_2                           15                            203
  CLUS_3                           31                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.3) MUTATED       14      9     12
  DEL PEAK 42(18Q22.3) WILD-TYPE     75     99     66
D67V6, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           14                             75
  CLUS_2                            9                             99
  CLUS_3                           12                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q22.3) MUTATED        4     14      3     11
  DEL PEAK 42(18Q22.3) WILD-TYPE     50     44     41     34
D67V7, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            4                             50
  CLUS_2                           14                             44
  CLUS_3                            3                             41
  CLUS_4                           11                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.3) MUTATED       10     19      3
  DEL PEAK 42(18Q22.3) WILD-TYPE     59     57     53
D67V8, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                           10                             59
  CLUS_2                           19                             57
  CLUS_3                            3                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.3) MUTATED        9      6      6
  DEL PEAK 42(18Q22.3) WILD-TYPE     35     61     30
D67V9, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                            6                             61
  CLUS_3                            6                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q22.3) MUTATED        6     10      5
  DEL PEAK 42(18Q22.3) WILD-TYPE     24     82     20
D67V10, multiclass
        clus
vv       DEL PEAK 42(18Q22.3) MUTATED DEL PEAK 42(18Q22.3) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           10                             82
  CLUS_3                            5                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 43(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.41) MUTATED       21     23     17     29
  DEL PEAK 43(19Q13.41) WILD-TYPE    126     73    135     84
D68V1, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            21                             126
  CLUS_2                            23                              73
  CLUS_3                            17                             135
  CLUS_4                            29                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.41) MUTATED       23     34      8     25
  DEL PEAK 43(19Q13.41) WILD-TYPE    125     68     92    133
D68V2, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            23                             125
  CLUS_2                            34                              68
  CLUS_3                             8                              92
  CLUS_4                            25                             133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.41) MUTATED       21     43     12     20
  DEL PEAK 43(19Q13.41) WILD-TYPE    135    140     75    100
D68V3, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            21                             135
  CLUS_2                            43                             140
  CLUS_3                            12                              75
  CLUS_4                            20                             100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.41) MUTATED       62     19     15
  DEL PEAK 43(19Q13.41) WILD-TYPE    231    105    114
D68V4, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            62                             231
  CLUS_2                            19                             105
  CLUS_3                            15                             114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.41) MUTATED       32     22     45
  DEL PEAK 43(19Q13.41) WILD-TYPE    130    196    152
D68V5, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            32                             130
  CLUS_2                            22                             196
  CLUS_3                            45                             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.41) MUTATED       12      8     29
  DEL PEAK 43(19Q13.41) WILD-TYPE     77    100     49
D68V6, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                            12                              77
  CLUS_2                             8                             100
  CLUS_3                            29                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(19Q13.41) MUTATED        4     15     10      8
  DEL PEAK 43(19Q13.41) WILD-TYPE     50     43     34     37
D68V7, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             4                              50
  CLUS_2                            15                              43
  CLUS_3                            10                              34
  CLUS_4                             8                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.41) MUTATED        9     17     11
  DEL PEAK 43(19Q13.41) WILD-TYPE     60     59     45
D68V8, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             9                              60
  CLUS_2                            17                              59
  CLUS_3                            11                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.41) MUTATED        9      6     10
  DEL PEAK 43(19Q13.41) WILD-TYPE     35     61     26
D68V9, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             9                              35
  CLUS_2                             6                              61
  CLUS_3                            10                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(19Q13.41) MUTATED        5     12      8
  DEL PEAK 43(19Q13.41) WILD-TYPE     25     80     17
D68V10, multiclass
        clus
vv       DEL PEAK 43(19Q13.41) MUTATED DEL PEAK 43(19Q13.41) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            12                              80
  CLUS_3                             8                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 44(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(21Q21.1) MUTATED        5     14     15     13
  DEL PEAK 44(21Q21.1) WILD-TYPE    142     82    137    100
D69V1, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                           14                             82
  CLUS_3                           15                            137
  CLUS_4                           13                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(21Q21.1) MUTATED        5     19      8     15
  DEL PEAK 44(21Q21.1) WILD-TYPE    143     83     92    143
D69V2, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            5                            143
  CLUS_2                           19                             83
  CLUS_3                            8                             92
  CLUS_4                           15                            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(21Q21.1) MUTATED        8     24     13      8
  DEL PEAK 44(21Q21.1) WILD-TYPE    148    159     74    112
D69V3, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            8                            148
  CLUS_2                           24                            159
  CLUS_3                           13                             74
  CLUS_4                            8                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q21.1) MUTATED       33      7     13
  DEL PEAK 44(21Q21.1) WILD-TYPE    260    117    116
D69V4, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                           33                            260
  CLUS_2                            7                            117
  CLUS_3                           13                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q21.1) MUTATED       23     17     16
  DEL PEAK 44(21Q21.1) WILD-TYPE    139    201    181
D69V5, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                           23                            139
  CLUS_2                           17                            201
  CLUS_3                           16                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q21.1) MUTATED        1     12     13
  DEL PEAK 44(21Q21.1) WILD-TYPE     88     96     65
D69V6, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            1                             88
  CLUS_2                           12                             96
  CLUS_3                           13                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(21Q21.1) MUTATED        1      6      9      1
  DEL PEAK 44(21Q21.1) WILD-TYPE     53     52     35     44
D69V7, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            1                             53
  CLUS_2                            6                             52
  CLUS_3                            9                             35
  CLUS_4                            1                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q21.1) MUTATED        2      6      9
  DEL PEAK 44(21Q21.1) WILD-TYPE     67     70     47
D69V8, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            2                             67
  CLUS_2                            6                             70
  CLUS_3                            9                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q21.1) MUTATED        3      4      4
  DEL PEAK 44(21Q21.1) WILD-TYPE     41     63     32
D69V9, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            3                             41
  CLUS_2                            4                             63
  CLUS_3                            4                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(21Q21.1) MUTATED        2      7      2
  DEL PEAK 44(21Q21.1) WILD-TYPE     28     85     23
D69V10, multiclass
        clus
vv       DEL PEAK 44(21Q21.1) MUTATED DEL PEAK 44(21Q21.1) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            7                             85
  CLUS_3                            2                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 45(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(22Q13.32) MUTATED       55     39     60     38
  DEL PEAK 45(22Q13.32) WILD-TYPE     92     57     92     75
D70V1, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            55                              92
  CLUS_2                            39                              57
  CLUS_3                            60                              92
  CLUS_4                            38                              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(22Q13.32) MUTATED       55     37     39     61
  DEL PEAK 45(22Q13.32) WILD-TYPE     93     65     61     97
D70V2, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            55                              93
  CLUS_2                            37                              65
  CLUS_3                            39                              61
  CLUS_4                            61                              97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(22Q13.32) MUTATED       59     82     24     41
  DEL PEAK 45(22Q13.32) WILD-TYPE     97    101     63     79
D70V3, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            59                              97
  CLUS_2                            82                             101
  CLUS_3                            24                              63
  CLUS_4                            41                              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED      107     44     55
  DEL PEAK 45(22Q13.32) WILD-TYPE    186     80     74
D70V4, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                           107                             186
  CLUS_2                            44                              80
  CLUS_3                            55                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       85     63     64
  DEL PEAK 45(22Q13.32) WILD-TYPE     77    155    133
D70V5, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            85                              77
  CLUS_2                            63                             155
  CLUS_3                            64                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       38     34     29
  DEL PEAK 45(22Q13.32) WILD-TYPE     51     74     49
D70V6, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            38                              51
  CLUS_2                            34                              74
  CLUS_3                            29                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(22Q13.32) MUTATED       18     24     18     16
  DEL PEAK 45(22Q13.32) WILD-TYPE     36     34     26     29
D70V7, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            18                              36
  CLUS_2                            24                              34
  CLUS_3                            18                              26
  CLUS_4                            16                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       26     33     17
  DEL PEAK 45(22Q13.32) WILD-TYPE     43     43     39
D70V8, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            26                              43
  CLUS_2                            33                              43
  CLUS_3                            17                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED       16     26     22
  DEL PEAK 45(22Q13.32) WILD-TYPE     28     41     14
D70V9, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                            16                              28
  CLUS_2                            26                              41
  CLUS_3                            22                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(22Q13.32) MUTATED        9     40     15
  DEL PEAK 45(22Q13.32) WILD-TYPE     21     52     10
D70V10, multiclass
        clus
vv       DEL PEAK 45(22Q13.32) MUTATED DEL PEAK 45(22Q13.32) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            40                              52
  CLUS_3                            15                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 46(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       24     32     25     27
  DEL PEAK 46(XP22.2) WILD-TYPE    123     64    127     86
D71V1, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          24                           123
  CLUS_2                          32                            64
  CLUS_3                          25                           127
  CLUS_4                          27                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       22     36     18     32
  DEL PEAK 46(XP22.2) WILD-TYPE    126     66     82    126
D71V2, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          22                           126
  CLUS_2                          36                            66
  CLUS_3                          18                            82
  CLUS_4                          32                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED       25     48     16     22
  DEL PEAK 46(XP22.2) WILD-TYPE    131    135     71     98
D71V3, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          25                           131
  CLUS_2                          48                           135
  CLUS_3                          16                            71
  CLUS_4                          22                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       66     18     27
  DEL PEAK 46(XP22.2) WILD-TYPE    227    106    102
D71V4, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          66                           227
  CLUS_2                          18                           106
  CLUS_3                          27                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       59     26     33
  DEL PEAK 46(XP22.2) WILD-TYPE    103    192    164
D71V5, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          59                           103
  CLUS_2                          26                           192
  CLUS_3                          33                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       12     19     28
  DEL PEAK 46(XP22.2) WILD-TYPE     77     89     50
D71V6, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          12                            77
  CLUS_2                          19                            89
  CLUS_3                          28                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(XP22.2) MUTATED        8     11      8     11
  DEL PEAK 46(XP22.2) WILD-TYPE     46     47     36     34
D71V7, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                           8                            46
  CLUS_2                          11                            47
  CLUS_3                           8                            36
  CLUS_4                          11                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       11     19      8
  DEL PEAK 46(XP22.2) WILD-TYPE     58     57     48
D71V8, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          11                            58
  CLUS_2                          19                            57
  CLUS_3                           8                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       16     16      8
  DEL PEAK 46(XP22.2) WILD-TYPE     28     51     28
D71V9, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          16                            28
  CLUS_2                          16                            51
  CLUS_3                           8                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(XP22.2) MUTATED       10     24      6
  DEL PEAK 46(XP22.2) WILD-TYPE     20     68     19
D71V10, multiclass
        clus
vv       DEL PEAK 46(XP22.2) MUTATED DEL PEAK 46(XP22.2) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          24                            68
  CLUS_3                           6                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
