		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2q11.2	107 (20%)	415	9.9999e-06	0.0077	9.9999e-06	0.0077	0.50617	1	0.54039	1	0.051129	1	4e-04	0.223	0.0241	1	0.00086999	0.472	0.00244	1	0.078379	1
amp_2q31.2	112 (21%)	410	9.9999e-06	0.0077	9.9999e-06	0.0077	0.24186	1	0.30959	1	0.19055	1	0.01281	1	0.077809	1	0.0065499	1	0.00064999	0.356	0.0093799	1
amp_3q26.33	380 (73%)	142	9.9999e-06	0.0077	9.9999e-06	0.0077	0.13044	1	0.30987	1	9.9999e-06	0.0077	4e-05	0.0241	5e-04	0.276	0.59115	1	0.00019	0.109	0.16474	1
amp_5p15.33	240 (46%)	282	9.9999e-06	0.0077	9.9999e-06	0.0077	0.85593	1	0.83034	1	0.15893	1	0.17681	1	0.49623	1	0.03325	1	0.48048	1	0.98431	1
amp_6p12.1	110 (21%)	412	9.9999e-06	0.0077	3e-05	0.0183	0.45639	1	0.95154	1	0.85471	1	0.01513	1	0.43158	1	0.00252	1	0.071089	1	0.17313	1
amp_6q12	96 (18%)	426	9.9999e-06	0.0077	0.00015	0.0864	0.27555	1	0.89864	1	0.86765	1	0.15956	1	0.30639	1	0.23504	1	0.16316	1	0.41629	1
amp_7p11.2	222 (43%)	300	9.9999e-06	0.0077	9.9999e-06	0.0077	0.997	1	0.6718	1	0.04816	1	0.01033	1	0.48771	1	9.9999e-06	0.0077	0.0015	0.792	0.1226	1
amp_7q21.3	169 (32%)	353	9.9999e-06	0.0077	9.9999e-06	0.0077	0.33339	1	0.44102	1	0.30623	1	0.28083	1	0.04302	1	0.00024	0.136	0.061269	1	0.87457	1
amp_8p11.23	161 (31%)	361	9.9999e-06	0.0077	0.00489	1	0.80697	1	0.87279	1	0.12382	1	0.01055	1	0.00212	1	0.01071	1	0.22119	1	0.13095	1
amp_8q11.21	310 (59%)	212	9.9999e-06	0.0077	9.9999e-06	0.0077	0.095879	1	0.63037	1	0.00164	0.859	0.00016	0.092	0.03376	1	0.0051699	1	0.00093999	0.508	0.00206	1
amp_8q24.21	386 (74%)	136	9.9999e-06	0.0077	9.9999e-06	0.0077	0.31498	1	0.44478	1	0.01301	1	4e-05	0.0241	0.067979	1	0.00101	0.544	0.00021	0.12	0.0083099	1
amp_9p24.1	126 (24%)	396	9.9999e-06	0.0077	9.9999e-06	0.0077	0.13606	1	0.24939	1	0.0029	1	0.00089999	0.487	0.077179	1	0.00115	0.618	0.00031	0.174	0.04079	1
amp_9p23	124 (24%)	398	9.9999e-06	0.0077	9.9999e-06	0.0077	0.38721	1	0.42464	1	0.00317	1	0.00383	1	0.077569	1	0.00228	1	0.00123	0.658	0.21357	1
amp_9p13.3	139 (27%)	383	9.9999e-06	0.0077	0.00231	1	0.48506	1	0.12209	1	0.00074999	0.409	0.01538	1	0.01369	1	0.059289	1	0.04203	1	0.42012	1
amp_9q34.3	177 (34%)	345	9.9999e-06	0.0077	0.0146	1	0.23788	1	0.02294	1	0.95656	1	0.38369	1	0.58024	1	0.085829	1	0.62529	1	0.31809	1
amp_11p13	102 (20%)	420	0.00277	1	0.00085999	0.467	0.46028	1	0.18112	1	0.95921	1	0.21951	1	0.75278	1	0.4921	1	0.0055399	1	0.14961	1
amp_11q13.3	229 (44%)	293	9.9999e-06	0.0077	9.9999e-06	0.0077	0.83277	1	0.72786	1	0.17094	1	0.13363	1	0.78176	1	0.00426	1	0.00142	0.754	0.061899	1
amp_12p13.33	167 (32%)	355	9.9999e-06	0.0077	9.9999e-06	0.0077	0.04229	1	0.52131	1	0.0095399	1	0.00198	1	0.00159	0.835	0.086079	1	0.00185	0.958	0.38223	1
amp_12q15	103 (20%)	419	2e-05	0.0125	0.00035	0.196	0.066369	1	0.20534	1	0.12809	1	0.068099	1	0.74342	1	0.32099	1	0.95849	1	0.37417	1
amp_13q22.1	105 (20%)	417	9.9999e-06	0.0077	9.9999e-06	0.0077	0.14833	1	0.15579	1	0.32912	1	0.28929	1	0.21503	1	0.16028	1	0.014	1	0.26872	1
amp_13q34	106 (20%)	416	9.9999e-06	0.0077	4e-05	0.0241	0.22604	1	0.49212	1	0.15631	1	0.12148	1	0.097009	1	0.13272	1	0.01615	1	0.12698	1
amp_15q26.3	105 (20%)	417	9.9999e-06	0.0077	0.0066599	1	0.45419	1	0.33009	1	0.60403	1	0.9825	1	0.16165	1	0.051309	1	0.04848	1	0.54113	1
amp_17q12	91 (17%)	431	9.9999e-06	0.0077	2e-05	0.0125	0.18458	1	0.72224	1	0.01111	1	0.01943	1	0.00303	1	6.9999e-05	0.0414	0.0080099	1	0.64801	1
amp_18p11.31	156 (30%)	366	9.9999e-06	0.0077	9.9999e-06	0.0077	0.52325	1	0.51333	1	0.083029	1	9.9999e-06	0.0077	0.32282	1	0.00017	0.0976	9.9999e-06	0.0077	0.03202	1
amp_18q11.2	106 (20%)	416	9.9999e-06	0.0077	7.9999e-05	0.047	0.52065	1	0.20435	1	0.36478	1	0.014	1	0.01291	1	0.02816	1	0.01622	1	0.20205	1
amp_19p13.2	60 (11%)	462	0.16159	1	9.9999e-06	0.0077	0.03948	1	1	1	0.00055999	0.309	8.9999e-05	0.0526	0.02082	1	0.22999	1	0.25446	1	0.18047	1
amp_20p12.2	191 (37%)	331	3e-05	0.0183	4e-05	0.0241	0.87163	1	0.93394	1	0.089949	1	0.0095199	1	0.10861	1	0.02253	1	0.66409	1	0.04311	1
amp_20q11.22	227 (43%)	295	9.9999e-06	0.0077	2e-05	0.0125	0.50538	1	0.83176	1	0.10811	1	0.01034	1	0.29487	1	0.02374	1	0.83372	1	0.073349	1
amp_xq28	150 (29%)	372	9.9999e-06	0.0077	2e-05	0.0125	0.64069	1	0.19724	1	0.30459	1	0.14529	1	0.25523	1	0.093009	1	0.26044	1	0.063239	1
del_1p36.21	95 (18%)	427	9.9999e-06	0.0077	9.9999e-06	0.0077	0.00072999	0.399	0.0056199	1	9.9999e-06	0.0077	6.9999e-05	0.0414	0.00147	0.778	0.04014	1	0.00114	0.613	0.01149	1
del_1p13.2	133 (25%)	389	9.9999e-06	0.0077	9.9999e-06	0.0077	0.02449	1	0.0068399	1	0.02497	1	0.3787	1	0.00175	0.912	0.00021	0.12	0.00041	0.228	0.18403	1
del_1q44	48 (9%)	474	0.00044	0.244	0.01697	1	0.72974	1	0.90903	1	0.01462	1	0.00428	1	0.0018	0.934	0.04542	1	0.01834	1	0.43581	1
del_2q21.2	78 (15%)	444	0.91292	1	0.02129	1	0.7023	1	0.21141	1	0.02696	1	0.0065399	1	0.00239	1	0.25956	1	0.03928	1	0.03538	1
del_2q22.1	121 (23%)	401	0.0193	1	2e-05	0.0125	0.34855	1	0.83834	1	0.27566	1	0.25304	1	0.1637	1	0.00144	0.763	0.03098	1	0.04119	1
del_2q36.2	157 (30%)	365	9.9999e-06	0.0077	9.9999e-06	0.0077	0.093139	1	0.85677	1	0.01094	1	0.01365	1	0.059849	1	0.02429	1	0.29833	1	0.04935	1
del_3p26.2	348 (67%)	174	9.9999e-06	0.0077	9.9999e-06	0.0077	0.52468	1	0.21041	1	7.9999e-05	0.047	9.9999e-06	0.0077	0.01822	1	9.9999e-06	0.0077	4e-05	0.0241	0.0067499	1
del_3p24.1	368 (70%)	154	9.9999e-06	0.0077	9.9999e-06	0.0077	0.4179	1	0.1166	1	0.00169	0.882	3e-05	0.0183	0.00264	1	5e-05	0.0297	2e-05	0.0125	0.02953	1
del_3p14.2	372 (71%)	150	9.9999e-06	0.0077	9.9999e-06	0.0077	0.61161	1	0.17446	1	0.01046	1	2e-05	0.0125	0.089839	1	0.00036	0.201	3e-05	0.0183	0.31646	1
del_3p12.1	343 (66%)	179	9.9999e-06	0.0077	9.9999e-06	0.0077	0.83132	1	0.90065	1	0.02074	1	3e-05	0.0183	0.060149	1	0.00052999	0.293	9.9999e-06	0.0077	0.51562	1
del_4p15.2	208 (40%)	314	9.9999e-06	0.0077	9.9999e-06	0.0077	0.01172	1	0.33107	1	0.00011	0.0637	0.00060999	0.335	0.0074099	1	0.02989	1	0.00024	0.136	0.01679	1
del_4q21.3	156 (30%)	366	9.9999e-06	0.0077	9.9999e-06	0.0077	0.28347	1	0.04693	1	0.01037	1	0.00152	0.801	0.40071	1	0.03125	1	0.19798	1	0.93626	1
del_4q22.1	169 (32%)	353	9.9999e-06	0.0077	9.9999e-06	0.0077	0.25049	1	0.075519	1	0.0084099	1	0.00277	1	0.26429	1	0.03816	1	0.091219	1	0.3942	1
del_4q35.2	213 (41%)	309	9.9999e-06	0.0077	9.9999e-06	0.0077	0.84459	1	0.18345	1	0.0118	1	0.1192	1	0.15043	1	0.0058299	1	0.11926	1	0.24135	1
del_5q12.1	215 (41%)	307	9.9999e-06	0.0077	9.9999e-06	0.0077	0.088419	1	0.35948	1	0.062649	1	9.9999e-06	0.0077	0.086389	1	3e-05	0.0183	4e-04	0.223	0.04786	1
del_5q15	226 (43%)	296	9.9999e-06	0.0077	9.9999e-06	0.0077	0.14461	1	0.42966	1	0.10752	1	9.9999e-06	0.0077	0.10753	1	9.9999e-06	0.0077	0.00013	0.075	0.34197	1
del_5q35.3	199 (38%)	323	9.9999e-06	0.0077	9.9999e-06	0.0077	0.23872	1	0.72211	1	0.01961	1	9.9999e-06	0.0077	0.24007	1	2e-05	0.0125	0.00019	0.109	0.11664	1
del_6p25.3	96 (18%)	426	8.9999e-05	0.0526	9.9999e-06	0.0077	0.04161	1	0.01036	1	0.002	1	0.097389	1	0.17581	1	0.72694	1	0.22982	1	0.65992	1
del_7q31.1	77 (15%)	445	0.00221	1	0.28087	1	0.56965	1	0.37763	1	0.51023	1	0.21547	1	0.72369	1	0.17415	1	0.48074	1	0.69272	1
del_7q36.1	132 (25%)	390	0.00029	0.163	0.39301	1	0.04456	1	0.67889	1	0.76887	1	0.70578	1	0.79072	1	0.32952	1	0.99312	1	0.97861	1
del_8p23.2	304 (58%)	218	9.9999e-06	0.0077	9.9999e-06	0.0077	0.28056	1	0.32425	1	0.00124	0.662	5.9999e-05	0.0356	0.01772	1	0.00419	1	9.9999e-06	0.0077	3e-05	0.0183
del_9p23	239 (46%)	283	9.9999e-06	0.0077	9.9999e-06	0.0077	0.28284	1	0.11394	1	0.8229	1	0.00022	0.125	0.40657	1	6.9999e-05	0.0414	9.9999e-06	0.0077	0.31098	1
del_9p21.3	302 (58%)	220	9.9999e-06	0.0077	9.9999e-06	0.0077	0.67251	1	0.36312	1	0.14489	1	9.9999e-06	0.0077	0.44175	1	9.9999e-06	0.0077	9.9999e-06	0.0077	0.14165	1
del_9q21.11	108 (21%)	414	9.9999e-06	0.0077	9.9999e-06	0.0077	0.98271	1	0.23981	1	0.85437	1	0.02689	1	0.79597	1	0.00063999	0.351	0.00364	1	0.92026	1
del_9q34.3	79 (15%)	443	5.9999e-05	0.0356	0.00068999	0.377	0.61234	1	0.3711	1	0.43656	1	0.04778	1	0.49573	1	0.0090099	1	0.00355	1	0.95664	1
del_10p15.3	170 (33%)	352	9.9999e-06	0.0077	9.9999e-06	0.0077	0.4739	1	0.70736	1	0.12141	1	0.096309	1	0.01472	1	0.081619	1	0.00024	0.136	0.34255	1
del_10p11.21	162 (31%)	360	9.9999e-06	0.0077	9.9999e-06	0.0077	0.44958	1	0.17265	1	0.15365	1	0.571	1	0.04163	1	0.01512	1	0.02479	1	0.70741	1
del_10q23.31	138 (26%)	384	9.9999e-06	0.0077	9.9999e-06	0.0077	0.13498	1	0.9796	1	9.9999e-05	0.058	2e-05	0.0125	0.02275	1	0.46434	1	0.00023	0.13	0.03237	1
del_11p15.5	163 (31%)	359	9.9999e-06	0.0077	9.9999e-06	0.0077	0.86819	1	0.28177	1	2e-05	0.0125	0.00261	1	9.9999e-06	0.0077	0.00344	1	6.9999e-05	0.0414	0.0076999	1
del_11q23.1	246 (47%)	276	9.9999e-06	0.0077	9.9999e-06	0.0077	0.086959	1	0.16321	1	2e-05	0.0125	9.9999e-06	0.0077	0.0082599	1	0.01413	1	0.073249	1	0.24599	1
del_12q24.33	63 (12%)	459	9.9999e-06	0.0077	2e-05	0.0125	0.61533	1	0.45938	1	0.86306	1	0.56302	1	0.47991	1	0.1204	1	0.12912	1	0.55499	1
del_13q12.11	233 (45%)	289	9.9999e-06	0.0077	9.9999e-06	0.0077	0.15739	1	0.24119	1	0.02199	1	9.9999e-06	0.0077	0.47267	1	0.03026	1	0.01051	1	0.88755	1
del_13q14.2	217 (42%)	305	9.9999e-06	0.0077	9.9999e-06	0.0077	0.10951	1	0.56708	1	2e-05	0.0125	9.9999e-06	0.0077	0.00137	0.729	0.21443	1	0.00166	0.868	0.12803	1
del_14q11.2	75 (14%)	447	0.00028	0.157	0.01592	1	0.31877	1	0.89968	1	0.11813	1	0.27953	1	0.0075799	1	0.03154	1	0.00155	0.815	0.12596	1
del_14q32.32	75 (14%)	447	0.01032	1	9.9999e-06	0.0077	0.01804	1	0.46751	1	9.9999e-06	0.0077	9.9999e-06	0.0077	0.00115	0.618	0.02859	1	9.9999e-06	0.0077	0.00076999	0.419
del_15q15.1	124 (24%)	398	9.9999e-06	0.0077	0.11894	1	0.66767	1	0.41304	1	0.069579	1	0.083299	1	0.70644	1	0.63719	1	0.059199	1	0.63034	1
del_16q23.1	98 (19%)	424	5e-05	0.0297	9.9999e-06	0.0077	0.46797	1	0.45947	1	9.9999e-06	0.0077	9.9999e-06	0.0077	0.0082599	1	0.04035	1	3e-05	0.0183	0.0013	0.693
del_16q23.3	105 (20%)	417	4e-05	0.0241	9.9999e-06	0.0077	0.16226	1	0.23126	1	9.9999e-06	0.0077	9.9999e-06	0.0077	0.02192	1	0.16288	1	7.9999e-05	0.047	0.00345	1
del_17p11.2	99 (19%)	423	9.9999e-06	0.0077	0.00185	0.958	0.89077	1	0.97259	1	0.25922	1	0.27402	1	0.47537	1	0.12642	1	0.02481	1	0.92748	1
del_17q25.3	71 (14%)	451	0.24238	1	2e-05	0.0125	0.43211	1	0.69276	1	0.01218	1	0.00312	1	0.0090499	1	0.050409	1	0.070029	1	0.00343	1
del_18q21.2	268 (51%)	254	9.9999e-06	0.0077	9.9999e-06	0.0077	0.90088	1	0.37704	1	0.0068499	1	9.9999e-06	0.0077	0.03361	1	4e-05	0.0241	8.9999e-05	0.0526	0.079969	1
del_18q23	288 (55%)	234	9.9999e-06	0.0077	9.9999e-06	0.0077	0.25775	1	0.2495	1	0.0052899	1	9.9999e-06	0.0077	0.061239	1	2e-05	0.0125	9.9999e-06	0.0077	0.0212	1
del_19p13.3	175 (34%)	347	9.9999e-06	0.0077	2e-05	0.0125	0.30319	1	0.36542	1	0.01677	1	0.01839	1	0.1173	1	0.00021	0.12	9.9999e-06	0.0077	0.089959	1
del_19q13.43	97 (19%)	425	9.9999e-06	0.0077	2e-05	0.0125	0.32977	1	0.58697	1	0.88209	1	0.34412	1	0.43694	1	0.065849	1	0.23973	1	0.65047	1
del_21q22.3	208 (40%)	314	9.9999e-06	0.0077	9.9999e-06	0.0077	0.55276	1	0.7247	1	0.01684	1	0.01815	1	0.33893	1	8.9999e-05	0.0526	0.00012	0.0694	0.13293	1
del_xp22.2	157 (30%)	365	9.9999e-06	0.0077	9.9999e-06	0.0077	0.31719	1	0.0026	1	0.087569	1	0.0056599	1	0.0053399	1	0.15752	1	0.00471	1	0.3369	1
del_xp21.3	159 (30%)	363	9.9999e-06	0.0077	9.9999e-06	0.0077	0.5603	1	0.057609	1	0.46798	1	0.014	1	0.1075	1	0.086929	1	0.0138	1	0.25125	1
del_xq21.33	80 (15%)	442	9.9999e-06	0.0077	9.9999e-06	0.0077	0.34301	1	0.12803	1	0.00179	0.931	0.02202	1	0.00017	0.0976	0.01319	1	0.04182	1	0.17378	1
