[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTKICH-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KICH-TP/11588615/KICH-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KICH-TP/11544700/transformed.cor.cli.txt"

nPatients in clinical file=66, in cluster file=66, common to both=66
[1] "Reduce the number of clustering variables from 80 to 61."
[1] 61 66
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                8                58 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                8                58 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                8                58 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                8                58 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24                42 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24                42 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               24                42 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               24                42 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                8                58 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                8                58 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                58 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                58 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               24                42 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               24                42 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               24                42 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               24                42 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               17                49 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               17                49 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               18                48 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               18                48 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               10                56 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               10                56 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               10                56 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               10                56 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 4                 62 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 4                 62 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                15                 51 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                15                 51 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                 51 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                15                 51 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                19                 47 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                19                 47 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                20                 46 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                20                 46 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 45 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 45 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                21                 45 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                21                 45 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                 45 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                 45 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                 45 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                21                 45 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                17                 49 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                17                 49 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                16                 50 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                16                 50 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 47 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                19                 47 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                 49 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                 49 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                20                 46 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                20                 46 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                21                 45 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                21                 45 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 4                 62 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 4                 62 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                19                 47 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                19                 47 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                6                60 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                6                60 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               53                13 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               53                13 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               52                14 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               52                14 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               46                20 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               46                20 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               46                20 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               46                20 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                9                57 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                9                57 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8                58 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8                58 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10                56 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10                56 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                56 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                56 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51                15 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               51                15 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               51                15 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               51                15 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                9                57 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                9                57 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8                58 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8                58 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               10                56 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               10                56 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               10                56 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               10                56 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                 18 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                48                 18 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                49                 17 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                49                 17 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                 59 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 7                 59 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 7                 59 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 7                 59 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                 23 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                 23 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 62 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 62 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 61 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 61 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                50                 16 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                50                 16 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                50                 16 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                50                 16 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 58 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 8                 58 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                10                 56 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                10                 56 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 63 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 63 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 62 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 62 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 63 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 63 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                35                 31 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                35                 31 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                 58 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                 58 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               39                27 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               39                27 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 66 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 66 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        0      8      0
  3P GAIN WILD-TYPE      5     39     14
D1V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        1      6      1
  3P GAIN WILD-TYPE     17     29     12
D1V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               6                29
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        3      2      2      1
  3P GAIN WILD-TYPE     16     20     13      9
D1V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               2                20
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        3      1      2      0      2      0      0
  3P GAIN WILD-TYPE     16     15      5      6      8      4      4
D1V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               1                15
  CLUS_3               2                 5
  CLUS_4               0                 6
  CLUS_5               2                 8
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        4      2      2
  3P GAIN WILD-TYPE     16     22     20
D1V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               2                22
  CLUS_3               2                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        1      1      2      0      1      1      2
  3P GAIN WILD-TYPE     17     10     10      6      4      4      7
D1V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                10
  CLUS_3               2                10
  CLUS_4               0                 6
  CLUS_5               1                 4
  CLUS_6               1                 4
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V7, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    3  3
  3P GAIN WILD-TYPE 16 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      3    3
  3P GAIN WILD-TYPE   16   26
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               3                26
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P GAIN MUTATED        1      0      1      2      0      2      0      0
  3P GAIN WILD-TYPE      9      6      4      6      4      4      5      4
D1V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               1                 4
  CLUS_4               2                 6
  CLUS_5               0                 4
  CLUS_6               2                 4
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        0      8      0
  3Q GAIN WILD-TYPE      5     39     14
D2V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        1      6      1
  3Q GAIN WILD-TYPE     17     29     12
D2V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               6                29
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        3      2      2      1
  3Q GAIN WILD-TYPE     16     20     13      9
D2V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               2                20
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        3      1      2      0      2      0      0
  3Q GAIN WILD-TYPE     16     15      5      6      8      4      4
D2V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               1                15
  CLUS_3               2                 5
  CLUS_4               0                 6
  CLUS_5               2                 8
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      2      2
  3Q GAIN WILD-TYPE     16     22     20
D2V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               2                22
  CLUS_3               2                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        1      1      2      0      1      1      2
  3Q GAIN WILD-TYPE     17     10     10      6      4      4      7
D2V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                10
  CLUS_3               2                10
  CLUS_4               0                 6
  CLUS_5               1                 4
  CLUS_6               1                 4
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V7, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED    3  3
  3Q GAIN WILD-TYPE 16 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      3    3
  3Q GAIN WILD-TYPE   16   26
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               3                26
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q GAIN MUTATED        1      0      1      2      0      2      0      0
  3Q GAIN WILD-TYPE      9      6      4      6      4      4      5      4
D2V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               1                 4
  CLUS_4               2                 6
  CLUS_5               0                 4
  CLUS_6               2                 4
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0     16      8
  4P GAIN WILD-TYPE      5     31      6
D3V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              16                31
  CLUS_3               8                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        6     13      5
  4P GAIN WILD-TYPE     12     22      8
D3V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        4     17      2      1
  4P GAIN WILD-TYPE     15      5     13      9
D3V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              17                 5
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        4     14      3      1      1      1      0
  4P GAIN WILD-TYPE     15      2      4      5      9      3      4
D3V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              14                 2
  CLUS_3               3                 4
  CLUS_4               1                 5
  CLUS_5               1                 9
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        6      9      9
  4P GAIN WILD-TYPE     14     15     13
D3V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               9                15
  CLUS_3               9                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        2      8      5      3      3      2      1
  4P GAIN WILD-TYPE     16      3      7      3      2      3      8
D3V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               8                 3
  CLUS_3               5                 7
  CLUS_4               3                 3
  CLUS_5               3                 2
  CLUS_6               2                 3
  CLUS_7               1                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V7, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    4 16
  4P GAIN WILD-TYPE 15 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      4   16
  4P GAIN WILD-TYPE   15   13
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              16                13
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4P GAIN MUTATED        4      6      3      4      0      2      1      0
  4P GAIN WILD-TYPE      6      0      2      4      4      4      4      4
D3V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               6                 0
  CLUS_3               3                 2
  CLUS_4               4                 4
  CLUS_5               0                 4
  CLUS_6               2                 4
  CLUS_7               1                 4
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0     16      8
  4Q GAIN WILD-TYPE      5     31      6
D4V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              16                31
  CLUS_3               8                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        6     13      5
  4Q GAIN WILD-TYPE     12     22      8
D4V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        4     17      2      1
  4Q GAIN WILD-TYPE     15      5     13      9
D4V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              17                 5
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        4     14      3      1      1      1      0
  4Q GAIN WILD-TYPE     15      2      4      5      9      3      4
D4V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              14                 2
  CLUS_3               3                 4
  CLUS_4               1                 5
  CLUS_5               1                 9
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        6      9      9
  4Q GAIN WILD-TYPE     14     15     13
D4V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               9                15
  CLUS_3               9                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q GAIN MUTATED        2      8      5      3      3      2      1
  4Q GAIN WILD-TYPE     16      3      7      3      2      3      8
D4V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               8                 3
  CLUS_3               5                 7
  CLUS_4               3                 3
  CLUS_5               3                 2
  CLUS_6               2                 3
  CLUS_7               1                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V7, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    4 16
  4Q GAIN WILD-TYPE 15 13
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      4   16
  4Q GAIN WILD-TYPE   15   13
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              16                13
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4Q GAIN MUTATED        4      6      3      4      0      2      1      0
  4Q GAIN WILD-TYPE      6      0      2      4      4      4      4      4
D4V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                 6
  CLUS_2               6                 0
  CLUS_3               3                 2
  CLUS_4               4                 4
  CLUS_5               0                 4
  CLUS_6               2                 4
  CLUS_7               1                 4
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        0      5      3
  5P GAIN WILD-TYPE      5     42     11
D5V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                42
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      5      2
  5P GAIN WILD-TYPE     17     30     11
D5V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               5                30
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        1      2      3      2
  5P GAIN WILD-TYPE     18     20     12      8
D5V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                20
  CLUS_3               3                12
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        1      2      2      0      2      1      0
  5P GAIN WILD-TYPE     18     14      5      6      8      3      4
D5V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                14
  CLUS_3               2                 5
  CLUS_4               0                 6
  CLUS_5               2                 8
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        4      3      1
  5P GAIN WILD-TYPE     16     21     21
D5V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               1                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        0      3      1      0      0      1      3
  5P GAIN WILD-TYPE     18      8     11      6      5      4      6
D5V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                 8
  CLUS_3               1                11
  CLUS_4               0                 6
  CLUS_5               0                 5
  CLUS_6               1                 4
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V7, binary
                   cls
clus                 0  1
  5P GAIN MUTATED    3  4
  5P GAIN WILD-TYPE 16 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      3    4
  5P GAIN WILD-TYPE   16   25
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               4                25
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P GAIN MUTATED        1      0      2      1      0      3      0      0
  5P GAIN WILD-TYPE      9      6      3      7      4      3      5      4
D5V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               2                 3
  CLUS_4               1                 7
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      5      3
  5Q GAIN WILD-TYPE      5     42     11
D6V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                42
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      5      2
  5Q GAIN WILD-TYPE     17     30     11
D6V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               5                30
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        1      2      3      2
  5Q GAIN WILD-TYPE     18     20     12      8
D6V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                20
  CLUS_3               3                12
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        1      2      2      0      2      1      0
  5Q GAIN WILD-TYPE     18     14      5      6      8      3      4
D6V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                14
  CLUS_3               2                 5
  CLUS_4               0                 6
  CLUS_5               2                 8
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        4      3      1
  5Q GAIN WILD-TYPE     16     21     21
D6V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               1                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        0      3      1      0      0      1      3
  5Q GAIN WILD-TYPE     18      8     11      6      5      4      6
D6V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                 8
  CLUS_3               1                11
  CLUS_4               0                 6
  CLUS_5               0                 5
  CLUS_6               1                 4
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V7, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED    3  4
  5Q GAIN WILD-TYPE 16 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3    4
  5Q GAIN WILD-TYPE   16   25
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               4                25
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q GAIN MUTATED        1      0      2      1      0      3      0      0
  5Q GAIN WILD-TYPE      9      6      3      7      4      3      5      4
D6V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               2                 3
  CLUS_4               1                 7
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        0     17      7
  7P GAIN WILD-TYPE      5     30      7
D7V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              17                30
  CLUS_3               7                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        6     13      5
  7P GAIN WILD-TYPE     12     22      8
D7V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        4     14      4      2
  7P GAIN WILD-TYPE     15      8     11      8
D7V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              14                 8
  CLUS_3               4                11
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED        4     11      3      2      3      1      0
  7P GAIN WILD-TYPE     15      5      4      4      7      3      4
D7V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              11                 5
  CLUS_3               3                 4
  CLUS_4               2                 4
  CLUS_5               3                 7
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        7      8      9
  7P GAIN WILD-TYPE     13     16     13
D7V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               7                13
  CLUS_2               8                16
  CLUS_3               9                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED        2      6      5      2      3      3      3
  7P GAIN WILD-TYPE     16      5      7      4      2      2      6
D7V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               6                 5
  CLUS_3               5                 7
  CLUS_4               2                 4
  CLUS_5               3                 2
  CLUS_6               3                 2
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V7, binary
                   cls
clus                 0  1
  7P GAIN MUTATED    7 13
  7P GAIN WILD-TYPE 12 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      7   13
  7P GAIN WILD-TYPE   12   16
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               7                12
  CLUS_2              13                16
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7P GAIN MUTATED        3      5      3      3      0      3      3      0
  7P GAIN WILD-TYPE      7      1      2      5      4      3      2      4
D7V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               5                 1
  CLUS_3               3                 2
  CLUS_4               3                 5
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               3                 2
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        0     17      7
  7Q GAIN WILD-TYPE      5     30      7
D8V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              17                30
  CLUS_3               7                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        6     13      5
  7Q GAIN WILD-TYPE     12     22      8
D8V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                12
  CLUS_2              13                22
  CLUS_3               5                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        4     14      4      2
  7Q GAIN WILD-TYPE     15      8     11      8
D8V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              14                 8
  CLUS_3               4                11
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED        4     11      3      2      3      1      0
  7Q GAIN WILD-TYPE     15      5      4      4      7      3      4
D8V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              11                 5
  CLUS_3               3                 4
  CLUS_4               2                 4
  CLUS_5               3                 7
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        7      8      9
  7Q GAIN WILD-TYPE     13     16     13
D8V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                13
  CLUS_2               8                16
  CLUS_3               9                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED        2      6      5      2      3      3      3
  7Q GAIN WILD-TYPE     16      5      7      4      2      2      6
D8V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                16
  CLUS_2               6                 5
  CLUS_3               5                 7
  CLUS_4               2                 4
  CLUS_5               3                 2
  CLUS_6               3                 2
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V7, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED    7 13
  7Q GAIN WILD-TYPE 12 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      7   13
  7Q GAIN WILD-TYPE   12   16
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               7                12
  CLUS_2              13                16
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7Q GAIN MUTATED        3      5      3      3      0      3      3      0
  7Q GAIN WILD-TYPE      7      1      2      5      4      3      2      4
D8V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               5                 1
  CLUS_3               3                 2
  CLUS_4               3                 5
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               3                 2
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        0     14      3
  8P GAIN WILD-TYPE      5     33     11
D9V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              14                33
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      9      5
  8P GAIN WILD-TYPE     15     26      8
D9V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               9                26
  CLUS_3               5                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        2     12      2      1
  8P GAIN WILD-TYPE     17     10     13      9
D9V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              12                10
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        2      9      3      1      2      0      0
  8P GAIN WILD-TYPE     17      7      4      5      8      4      4
D9V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2               9                 7
  CLUS_3               3                 4
  CLUS_4               1                 5
  CLUS_5               2                 8
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        6      4      7
  8P GAIN WILD-TYPE     14     20     15
D9V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               4                20
  CLUS_3               7                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED        1      3      5      1      3      2      2
  8P GAIN WILD-TYPE     17      8      7      5      2      3      7
D9V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               3                 8
  CLUS_3               5                 7
  CLUS_4               1                 5
  CLUS_5               3                 2
  CLUS_6               2                 3
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V7, binary
                   cls
clus                 0  1
  8P GAIN MUTATED    5  9
  8P GAIN WILD-TYPE 14 20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      5    9
  8P GAIN WILD-TYPE   14   20
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                14
  CLUS_2               9                20
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P GAIN MUTATED        2      5      0      3      0      3      1      0
  8P GAIN WILD-TYPE      8      1      5      5      4      3      4      4
D9V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               5                 1
  CLUS_3               0                 5
  CLUS_4               3                 5
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               1                 4
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        0     15      3
  8Q GAIN WILD-TYPE      5     32     11
D10V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              15                32
  CLUS_3               3                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        3     10      5
  8Q GAIN WILD-TYPE     15     25      8
D10V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2              10                25
  CLUS_3               5                 8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        2     13      2      1
  8Q GAIN WILD-TYPE     17      9     13      9
D10V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              13                 9
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        2     10      3      1      2      0      0
  8Q GAIN WILD-TYPE     17      6      4      5      8      4      4
D10V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              10                 6
  CLUS_3               3                 4
  CLUS_4               1                 5
  CLUS_5               2                 8
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        6      5      7
  8Q GAIN WILD-TYPE     14     19     15
D10V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                14
  CLUS_2               5                19
  CLUS_3               7                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED        1      4      5      1      3      2      2
  8Q GAIN WILD-TYPE     17      7      7      5      2      3      7
D10V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               4                 7
  CLUS_3               5                 7
  CLUS_4               1                 5
  CLUS_5               3                 2
  CLUS_6               2                 3
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V7, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    5 10
  8Q GAIN WILD-TYPE 14 19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5   10
  8Q GAIN WILD-TYPE   14   19
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               5                14
  CLUS_2              10                19
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q GAIN MUTATED        3      5      0      3      0      3      1      0
  8Q GAIN WILD-TYPE      7      1      5      5      4      3      4      4
D10V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 7
  CLUS_2               5                 1
  CLUS_3               0                 5
  CLUS_4               3                 5
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               1                 4
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      8      2
  9P GAIN WILD-TYPE      5     39     12
D11V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      5      2
  9P GAIN WILD-TYPE     15     30     11
D11V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        4      4      1      1
  9P GAIN WILD-TYPE     15     18     14      9
D11V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2               4                18
  CLUS_3               1                14
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        4      3      2      0      1      0      0
  9P GAIN WILD-TYPE     15     13      5      6      9      4      4
D11V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2               3                13
  CLUS_3               2                 5
  CLUS_4               0                 6
  CLUS_5               1                 9
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4      3      3
  9P GAIN WILD-TYPE     16     21     19
D11V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               3                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        1      2      3      0      1      1      2
  9P GAIN WILD-TYPE     17      9      9      6      4      4      7
D11V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                 9
  CLUS_3               3                 9
  CLUS_4               0                 6
  CLUS_5               1                 4
  CLUS_6               1                 4
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V7, binary
                   cls
clus                 0  1
  9P GAIN MUTATED    3  5
  9P GAIN WILD-TYPE 16 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      3    5
  9P GAIN WILD-TYPE   16   24
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P GAIN MUTATED        1      1      2      1      0      3      0      0
  9P GAIN WILD-TYPE      9      5      3      7      4      3      5      4
D11V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               2                 3
  CLUS_4               1                 7
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        0      8      2
  9Q GAIN WILD-TYPE      5     39     12
D12V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        3      5      2
  9Q GAIN WILD-TYPE     15     30     11
D12V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        4      4      1      1
  9Q GAIN WILD-TYPE     15     18     14      9
D12V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2               4                18
  CLUS_3               1                14
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED        4      3      2      0      1      0      0
  9Q GAIN WILD-TYPE     15     13      5      6      9      4      4
D12V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2               3                13
  CLUS_3               2                 5
  CLUS_4               0                 6
  CLUS_5               1                 9
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        4      3      3
  9Q GAIN WILD-TYPE     16     21     19
D12V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                16
  CLUS_2               3                21
  CLUS_3               3                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED        1      2      3      0      1      1      2
  9Q GAIN WILD-TYPE     17      9      9      6      4      4      7
D12V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                 9
  CLUS_3               3                 9
  CLUS_4               0                 6
  CLUS_5               1                 4
  CLUS_6               1                 4
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V7, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    3  5
  9Q GAIN WILD-TYPE 16 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      3    5
  9Q GAIN WILD-TYPE   16   24
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q GAIN MUTATED        1      1      2      1      0      3      0      0
  9Q GAIN WILD-TYPE      9      5      3      7      4      3      5      4
D12V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               2                 3
  CLUS_4               1                 7
  CLUS_5               0                 4
  CLUS_6               3                 3
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      2      2
  10P GAIN WILD-TYPE      5     45     12
D13V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 45
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      2      2
  10P GAIN WILD-TYPE     18     33     11
D13V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                 33
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        0      2      1      1
  10P GAIN WILD-TYPE     19     20     14      9
D13V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 20
  CLUS_3                1                 14
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        0      2      1      0      0      1      0
  10P GAIN WILD-TYPE     19     14      6      6     10      3      4
D13V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 14
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                0                 10
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      2      1
  10P GAIN WILD-TYPE     19     22     21
D13V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 22
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        0      2      0      0      1      0      1
  10P GAIN WILD-TYPE     18      9     12      6      4      5      8
D13V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                  9
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                1                  4
  CLUS_6                0                  5
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V7, binary
                    cls
clus                  0  1
  10P GAIN MUTATED    2  2
  10P GAIN WILD-TYPE 17 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2    2
  10P GAIN WILD-TYPE   17   27
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 27
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P GAIN MUTATED        0      1      1      0      0      1      1      0
  10P GAIN WILD-TYPE     10      5      4      8      4      5      4      4
D13V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                1                  5
  CLUS_3                1                  4
  CLUS_4                0                  8
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        0     10      5
  11P GAIN WILD-TYPE      5     37      9
D14V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               10                 37
  CLUS_3                5                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      7      4
  11P GAIN WILD-TYPE     14     28      9
D14V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                7                 28
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1     13      1      0
  11P GAIN WILD-TYPE     18      9     14     10
D14V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               13                  9
  CLUS_3                1                 14
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        1     11      1      1      1      0      0
  11P GAIN WILD-TYPE     18      5      6      5      9      4      4
D14V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               11                  5
  CLUS_3                1                  6
  CLUS_4                1                  5
  CLUS_5                1                  9
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      5      6
  11P GAIN WILD-TYPE     16     19     16
D14V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                5                 19
  CLUS_3                6                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        1      4      3      2      3      2      0
  11P GAIN WILD-TYPE     17      7      9      4      2      3      9
D14V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                4                  7
  CLUS_3                3                  9
  CLUS_4                2                  4
  CLUS_5                3                  2
  CLUS_6                2                  3
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V7, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    3 10
  11P GAIN WILD-TYPE 16 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      3   10
  11P GAIN WILD-TYPE   16   19
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               10                 19
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P GAIN MUTATED        2      5      1      3      0      1      1      0
  11P GAIN WILD-TYPE      8      1      4      5      4      5      4      4
D14V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                5                  1
  CLUS_3                1                  4
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0     10      5
  11Q GAIN WILD-TYPE      5     37      9
D15V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               10                 37
  CLUS_3                5                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        4      7      4
  11Q GAIN WILD-TYPE     14     28      9
D15V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                7                 28
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        1     14      0      0
  11Q GAIN WILD-TYPE     18      8     15     10
D15V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               14                  8
  CLUS_3                0                 15
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        1     12      1      1      0      0      0
  11Q GAIN WILD-TYPE     18      4      6      5     10      4      4
D15V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               12                  4
  CLUS_3                1                  6
  CLUS_4                1                  5
  CLUS_5                0                 10
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      6      6
  11Q GAIN WILD-TYPE     17     18     16
D15V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                6                 18
  CLUS_3                6                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        1      5      3      2      3      1      0
  11Q GAIN WILD-TYPE     17      6      9      4      2      4      9
D15V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                5                  6
  CLUS_3                3                  9
  CLUS_4                2                  4
  CLUS_5                3                  2
  CLUS_6                1                  4
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V7, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    3 10
  11Q GAIN WILD-TYPE 16 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      3   10
  11Q GAIN WILD-TYPE   16   19
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               10                 19
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q GAIN MUTATED        3      5      1      2      0      1      1      0
  11Q GAIN WILD-TYPE      7      1      4      6      4      5      4      4
D15V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                  1
  CLUS_3                1                  4
  CLUS_4                2                  6
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        0     15      4
  12P GAIN WILD-TYPE      5     32     10
D16V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        4     11      4
  12P GAIN WILD-TYPE     14     24      9
D16V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        3     11      3      2
  12P GAIN WILD-TYPE     16     11     12      8
D16V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               11                 11
  CLUS_3                3                 12
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        3      9      2      2      2      1      0
  12P GAIN WILD-TYPE     16      7      5      4      8      3      4
D16V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                9                  7
  CLUS_3                2                  5
  CLUS_4                2                  4
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        6      7      6
  12P GAIN WILD-TYPE     14     17     16
D16V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                7                 17
  CLUS_3                6                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED        1      6      5      1      1      2      3
  12P GAIN WILD-TYPE     17      5      7      5      4      3      6
D16V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                6                  5
  CLUS_3                5                  7
  CLUS_4                1                  5
  CLUS_5                1                  4
  CLUS_6                2                  3
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V7, binary
                    cls
clus                  0  1
  12P GAIN MUTATED    4 12
  12P GAIN WILD-TYPE 15 17
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      4   12
  12P GAIN WILD-TYPE   15   17
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               12                 17
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12P GAIN MUTATED        3      5      2      3      0      2      1      0
  12P GAIN WILD-TYPE      7      1      3      5      4      4      4      4
D16V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                  1
  CLUS_3                2                  3
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                2                  4
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        0     15      5
  12Q GAIN WILD-TYPE      5     32      9
D17V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                5                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        4     11      5
  12Q GAIN WILD-TYPE     14     24      8
D17V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                5                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        4     11      3      2
  12Q GAIN WILD-TYPE     15     11     12      8
D17V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 11
  CLUS_3                3                 12
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        4     10      1      2      2      1      0
  12Q GAIN WILD-TYPE     15      6      6      4      8      3      4
D17V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               10                  6
  CLUS_3                1                  6
  CLUS_4                2                  4
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        6      8      6
  12Q GAIN WILD-TYPE     14     16     16
D17V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                8                 16
  CLUS_3                6                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED        1      7      4      1      2      2      3
  12Q GAIN WILD-TYPE     17      4      8      5      3      3      6
D17V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                7                  4
  CLUS_3                4                  8
  CLUS_4                1                  5
  CLUS_5                2                  3
  CLUS_6                2                  3
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V7, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED    5 13
  12Q GAIN WILD-TYPE 14 16
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      5   13
  12Q GAIN WILD-TYPE   14   16
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                5                 14
  CLUS_2               13                 16
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12Q GAIN MUTATED        3      5      3      3      0      2      2      0
  12Q GAIN WILD-TYPE      7      1      2      5      4      4      3      4
D17V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                  1
  CLUS_3                3                  2
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                2                  4
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0     14      7
  14Q GAIN WILD-TYPE      5     33      7
D18V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        6     12      3
  14Q GAIN WILD-TYPE     12     23     10
D18V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               12                 23
  CLUS_3                3                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        4     14      3      0
  14Q GAIN WILD-TYPE     15      8     12     10
D18V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               14                  8
  CLUS_3                3                 12
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED        4     12      1      1      2      1      0
  14Q GAIN WILD-TYPE     15      4      6      5      8      3      4
D18V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               12                  4
  CLUS_3                1                  6
  CLUS_4                1                  5
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        4      9      8
  14Q GAIN WILD-TYPE     16     15     14
D18V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                9                 15
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED        2      7      5      2      2      2      1
  14Q GAIN WILD-TYPE     16      4      7      4      3      3      8
D18V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                7                  4
  CLUS_3                5                  7
  CLUS_4                2                  4
  CLUS_5                2                  3
  CLUS_6                2                  3
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V7, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    3 14
  14Q GAIN WILD-TYPE 16 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      3   14
  14Q GAIN WILD-TYPE   16   15
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               14                 15
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  14Q GAIN MUTATED        4      5      3      3      0      1      1      0
  14Q GAIN WILD-TYPE      6      1      2      5      4      5      4      4
D18V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                5                  1
  CLUS_3                3                  2
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0     14      7
  15Q GAIN WILD-TYPE      5     33      7
D19V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        6     12      3
  15Q GAIN WILD-TYPE     12     23     10
D19V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               12                 23
  CLUS_3                3                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        3     13      5      0
  15Q GAIN WILD-TYPE     16      9     10     10
D19V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               13                  9
  CLUS_3                5                 10
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        3     10      2      1      4      1      0
  15Q GAIN WILD-TYPE     16      6      5      5      6      3      4
D19V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               10                  6
  CLUS_3                2                  5
  CLUS_4                1                  5
  CLUS_5                4                  6
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        5      8      8
  15Q GAIN WILD-TYPE     15     16     14
D19V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                8                 16
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED        3      4      5      2      3      3      1
  15Q GAIN WILD-TYPE     15      7      7      4      2      2      8
D19V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                4                  7
  CLUS_3                5                  7
  CLUS_4                2                  4
  CLUS_5                3                  2
  CLUS_6                3                  2
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V7, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED    6 11
  15Q GAIN WILD-TYPE 13 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      6   11
  15Q GAIN WILD-TYPE   13   18
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 13
  CLUS_2               11                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  15Q GAIN MUTATED        4      4      2      3      0      2      2      0
  15Q GAIN WILD-TYPE      6      2      3      5      4      4      3      4
D19V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                4                  2
  CLUS_3                2                  3
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                2                  4
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        0     14      7
  16P GAIN WILD-TYPE      5     33      7
D20V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        6     11      4
  16P GAIN WILD-TYPE     12     24      9
D20V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               11                 24
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        4     16      1      0
  16P GAIN WILD-TYPE     15      6     14     10
D20V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               16                  6
  CLUS_3                1                 14
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        4     13      2      1      0      1      0
  16P GAIN WILD-TYPE     15      3      5      5     10      3      4
D20V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               13                  3
  CLUS_3                2                  5
  CLUS_4                1                  5
  CLUS_5                0                 10
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        3      9      9
  16P GAIN WILD-TYPE     17     15     13
D20V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                9                 15
  CLUS_3                9                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        2      7      5      3      3      1      0
  16P GAIN WILD-TYPE     16      4      7      3      2      4      9
D20V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                7                  4
  CLUS_3                5                  7
  CLUS_4                3                  3
  CLUS_5                3                  2
  CLUS_6                1                  4
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V7, binary
                    cls
clus                  0  1
  16P GAIN MUTATED    3 14
  16P GAIN WILD-TYPE 16 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      3   14
  16P GAIN WILD-TYPE   16   15
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               14                 15
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P GAIN MUTATED        4      6      3      2      0      1      1      0
  16P GAIN WILD-TYPE      6      0      2      6      4      5      4      4
D20V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                6                  0
  CLUS_3                3                  2
  CLUS_4                2                  6
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        0     14      7
  16Q GAIN WILD-TYPE      5     33      7
D21V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                7                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        6     11      4
  16Q GAIN WILD-TYPE     12     24      9
D21V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 12
  CLUS_2               11                 24
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        4     16      1      0
  16Q GAIN WILD-TYPE     15      6     14     10
D21V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               16                  6
  CLUS_3                1                 14
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        4     13      2      1      0      1      0
  16Q GAIN WILD-TYPE     15      3      5      5     10      3      4
D21V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               13                  3
  CLUS_3                2                  5
  CLUS_4                1                  5
  CLUS_5                0                 10
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        3      9      9
  16Q GAIN WILD-TYPE     17     15     13
D21V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                9                 15
  CLUS_3                9                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        2      7      5      3      3      1      0
  16Q GAIN WILD-TYPE     16      4      7      3      2      4      9
D21V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                7                  4
  CLUS_3                5                  7
  CLUS_4                3                  3
  CLUS_5                3                  2
  CLUS_6                1                  4
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V7, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED    3 14
  16Q GAIN WILD-TYPE 16 15
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      3   14
  16Q GAIN WILD-TYPE   16   15
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               14                 15
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q GAIN MUTATED        4      6      3      2      0      1      1      0
  16Q GAIN WILD-TYPE      6      0      2      6      4      5      4      4
D21V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                  6
  CLUS_2                6                  0
  CLUS_3                3                  2
  CLUS_4                2                  6
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0     13      4
  18P GAIN WILD-TYPE      5     34     10
D22V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               13                 34
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        5      8      4
  18P GAIN WILD-TYPE     13     27      9
D22V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                8                 27
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1     12      2      2
  18P GAIN WILD-TYPE     18     10     13      8
D22V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               12                 10
  CLUS_3                2                 13
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      9      3      1      1      1      1
  18P GAIN WILD-TYPE     18      7      4      5      9      3      3
D22V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                9                  7
  CLUS_3                3                  4
  CLUS_4                1                  5
  CLUS_5                1                  9
  CLUS_6                1                  3
  CLUS_7                1                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        5      7      5
  18P GAIN WILD-TYPE     15     17     17
D22V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                7                 17
  CLUS_3                5                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      6      2      3      1      1      3
  18P GAIN WILD-TYPE     17      5     10      3      4      4      6
D22V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                6                  5
  CLUS_3                2                 10
  CLUS_4                3                  3
  CLUS_5                1                  4
  CLUS_6                1                  4
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V7, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    4 11
  18P GAIN WILD-TYPE 15 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      4   11
  18P GAIN WILD-TYPE   15   18
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P GAIN MUTATED        3      5      2      1      0      3      0      1
  18P GAIN WILD-TYPE      7      1      3      7      4      3      5      3
D22V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                  1
  CLUS_3                2                  3
  CLUS_4                1                  7
  CLUS_5                0                  4
  CLUS_6                3                  3
  CLUS_7                0                  5
  CLUS_8                1                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0     12      4
  18Q GAIN WILD-TYPE      5     35     10
D23V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               12                 35
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        5      8      3
  18Q GAIN WILD-TYPE     13     27     10
D23V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                8                 27
  CLUS_3                3                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1     12      2      1
  18Q GAIN WILD-TYPE     18     10     13      9
D23V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               12                 10
  CLUS_3                2                 13
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        1      9      2      1      1      1      1
  18Q GAIN WILD-TYPE     18      7      5      5      9      3      3
D23V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                9                  7
  CLUS_3                2                  5
  CLUS_4                1                  5
  CLUS_5                1                  9
  CLUS_6                1                  3
  CLUS_7                1                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        4      7      5
  18Q GAIN WILD-TYPE     16     17     17
D23V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                7                 17
  CLUS_3                5                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q GAIN MUTATED        1      6      2      3      1      1      2
  18Q GAIN WILD-TYPE     17      5     10      3      4      4      7
D23V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                6                  5
  CLUS_3                2                 10
  CLUS_4                3                  3
  CLUS_5                1                  4
  CLUS_6                1                  4
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V7, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    3 11
  18Q GAIN WILD-TYPE 16 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      3   11
  18Q GAIN WILD-TYPE   16   18
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2               11                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q GAIN MUTATED        3      5      2      1      0      2      0      1
  18Q GAIN WILD-TYPE      7      1      3      7      4      4      5      3
D23V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                  1
  CLUS_3                2                  3
  CLUS_4                1                  7
  CLUS_5                0                  4
  CLUS_6                2                  4
  CLUS_7                0                  5
  CLUS_8                1                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0     15      4
  19P GAIN WILD-TYPE      5     32     10
D24V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3     13      3
  19P GAIN WILD-TYPE     15     22     10
D24V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2               13                 22
  CLUS_3                3                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        2     11      5      1
  19P GAIN WILD-TYPE     17     11     10      9
D24V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2               11                 11
  CLUS_3                5                 10
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        2     10      2      0      4      1      0
  19P GAIN WILD-TYPE     17      6      5      6      6      3      4
D24V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2               10                  6
  CLUS_3                2                  5
  CLUS_4                0                  6
  CLUS_5                4                  6
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        5      6      8
  19P GAIN WILD-TYPE     15     18     14
D24V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 15
  CLUS_2                6                 18
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED        1      6      4      1      2      3      2
  19P GAIN WILD-TYPE     17      5      8      5      3      2      7
D24V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                6                  5
  CLUS_3                4                  8
  CLUS_4                1                  5
  CLUS_5                2                  3
  CLUS_6                3                  2
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V7, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    6  9
  19P GAIN WILD-TYPE 13 20
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      6    9
  19P GAIN WILD-TYPE   13   20
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                6                 13
  CLUS_2                9                 20
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19P GAIN MUTATED        3      3      2      3      0      2      2      0
  19P GAIN WILD-TYPE      7      3      3      5      4      4      3      4
D24V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                3                  3
  CLUS_3                2                  3
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                2                  4
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        0     13      4
  19Q GAIN WILD-TYPE      5     34     10
D25V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               13                 34
  CLUS_3                4                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        3     12      2
  19Q GAIN WILD-TYPE     15     23     11
D25V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 15
  CLUS_2               12                 23
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        1     11      5      0
  19Q GAIN WILD-TYPE     18     11     10     10
D25V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               11                 11
  CLUS_3                5                 10
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED        1     10      1      0      4      1      0
  19Q GAIN WILD-TYPE     18      6      6      6      6      3      4
D25V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               10                  6
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                4                  6
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      5      8
  19Q GAIN WILD-TYPE     16     19     14
D25V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                5                 19
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED        1      5      4      1      2      3      1
  19Q GAIN WILD-TYPE     17      6      8      5      3      2      8
D25V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                5                  6
  CLUS_3                4                  8
  CLUS_4                1                  5
  CLUS_5                2                  3
  CLUS_6                3                  2
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V7, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED    5  8
  19Q GAIN WILD-TYPE 14 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      5    8
  19Q GAIN WILD-TYPE   14   21
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 14
  CLUS_2                8                 21
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q GAIN MUTATED        3      3      1      3      0      1      2      0
  19Q GAIN WILD-TYPE      7      3      4      5      4      5      3      4
D25V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                3                  3
  CLUS_3                1                  4
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        0     14      6
  20P GAIN WILD-TYPE      5     33      8
D26V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               14                 33
  CLUS_3                6                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        4     11      5
  20P GAIN WILD-TYPE     14     24      8
D26V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                5                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4     12      3      1
  20P GAIN WILD-TYPE     15     10     12      9
D26V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               12                 10
  CLUS_3                3                 12
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        4     10      3      0      2      1      0
  20P GAIN WILD-TYPE     15      6      4      6      8      3      4
D26V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               10                  6
  CLUS_3                3                  4
  CLUS_4                0                  6
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        6      6      8
  20P GAIN WILD-TYPE     14     18     14
D26V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 14
  CLUS_2                6                 18
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        1      6      5      1      3      2      2
  20P GAIN WILD-TYPE     17      5      7      5      2      3      7
D26V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                6                  5
  CLUS_3                5                  7
  CLUS_4                1                  5
  CLUS_5                3                  2
  CLUS_6                2                  3
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V7, binary
                    cls
clus                  0  1
  20P GAIN MUTATED    5 11
  20P GAIN WILD-TYPE 14 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      5   11
  20P GAIN WILD-TYPE   14   18
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                 14
  CLUS_2               11                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P GAIN MUTATED        2      4      3      3      0      3      1      0
  20P GAIN WILD-TYPE      8      2      2      5      4      3      4      4
D26V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                4                  2
  CLUS_3                3                  2
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                3                  3
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        0     15      6
  20Q GAIN WILD-TYPE      5     32      8
D27V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2               15                 32
  CLUS_3                6                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        4     11      6
  20Q GAIN WILD-TYPE     14     24      7
D27V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 14
  CLUS_2               11                 24
  CLUS_3                6                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        4     12      3      2
  20Q GAIN WILD-TYPE     15     10     12      8
D27V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               12                 10
  CLUS_3                3                 12
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        4     10      4      0      2      1      0
  20Q GAIN WILD-TYPE     15      6      3      6      8      3      4
D27V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               10                  6
  CLUS_3                4                  3
  CLUS_4                0                  6
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        7      6      8
  20Q GAIN WILD-TYPE     13     18     14
D27V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                7                 13
  CLUS_2                6                 18
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        1      6      5      1      3      2      3
  20Q GAIN WILD-TYPE     17      5      7      5      2      3      6
D27V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                6                  5
  CLUS_3                5                  7
  CLUS_4                1                  5
  CLUS_5                3                  2
  CLUS_6                2                  3
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V7, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED    6 11
  20Q GAIN WILD-TYPE 13 18
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      6   11
  20Q GAIN WILD-TYPE   13   18
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 13
  CLUS_2               11                 18
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q GAIN MUTATED        2      4      3      3      0      4      1      0
  20Q GAIN WILD-TYPE      8      2      2      5      4      2      4      4
D27V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                4                  2
  CLUS_3                3                  2
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                4                  2
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        0      2      2
  21Q GAIN WILD-TYPE      5     45     12
D28V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 45
  CLUS_3                2                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        0      2      2
  21Q GAIN WILD-TYPE     18     33     11
D28V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                2                 33
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        0      2      1      1
  21Q GAIN WILD-TYPE     19     20     14      9
D28V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 20
  CLUS_3                1                 14
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED        0      2      0      0      0      1      1
  21Q GAIN WILD-TYPE     19     14      7      6     10      3      3
D28V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 14
  CLUS_3                0                  7
  CLUS_4                0                  6
  CLUS_5                0                 10
  CLUS_6                1                  3
  CLUS_7                1                  3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      1      1
  21Q GAIN WILD-TYPE     18     23     21
D28V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 23
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED        0      1      0      0      1      1      1
  21Q GAIN WILD-TYPE     18     10     12      6      4      4      8
D28V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                1                 10
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                1                  4
  CLUS_6                1                  4
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V7, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    2  2
  21Q GAIN WILD-TYPE 17 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    2
  21Q GAIN WILD-TYPE   17   27
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 27
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q GAIN MUTATED        0      0      1      1      0      0      1      1
  21Q GAIN WILD-TYPE     10      6      4      7      4      6      4      3
D28V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 10
  CLUS_2                0                  6
  CLUS_3                1                  4
  CLUS_4                1                  7
  CLUS_5                0                  4
  CLUS_6                0                  6
  CLUS_7                1                  4
  CLUS_8                1                  3
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1     13      5
  22Q GAIN WILD-TYPE      4     34      9
D29V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2               13                 34
  CLUS_3                5                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        5      9      5
  22Q GAIN WILD-TYPE     13     26      8
D29V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                5                 13
  CLUS_2                9                 26
  CLUS_3                5                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        4     11      3      1
  22Q GAIN WILD-TYPE     15     11     12      9
D29V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 11
  CLUS_3                3                 12
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        4      8      3      1      2      1      0
  22Q GAIN WILD-TYPE     15      8      4      5      8      3      4
D29V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                8                  8
  CLUS_3                3                  4
  CLUS_4                1                  5
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        4      7      8
  22Q GAIN WILD-TYPE     16     17     14
D29V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 16
  CLUS_2                7                 17
  CLUS_3                8                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        1      7      5      1      2      1      2
  22Q GAIN WILD-TYPE     17      4      7      5      3      4      7
D29V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                7                  4
  CLUS_3                5                  7
  CLUS_4                1                  5
  CLUS_5                2                  3
  CLUS_6                1                  4
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V7, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    6 10
  22Q GAIN WILD-TYPE 13 19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      6   10
  22Q GAIN WILD-TYPE   13   19
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                6                 13
  CLUS_2               10                 19
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q GAIN MUTATED        3      5      3      0      0      3      2      0
  22Q GAIN WILD-TYPE      7      1      2      8      4      3      3      4
D29V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                5                  1
  CLUS_3                3                  2
  CLUS_4                0                  8
  CLUS_5                0                  4
  CLUS_6                3                  3
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      5      1
  XQ GAIN WILD-TYPE      5     42     13
D30V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                42
  CLUS_3               1                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        1      3      2
  XQ GAIN WILD-TYPE     17     32     11
D30V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                17
  CLUS_2               3                32
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        0      6      0      0
  XQ GAIN WILD-TYPE     19     16     15     10
D30V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               0                15
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        0      4      1      1      0      0      0
  XQ GAIN WILD-TYPE     19     12      6      5     10      4      4
D30V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                19
  CLUS_2               4                12
  CLUS_3               1                 6
  CLUS_4               1                 5
  CLUS_5               0                10
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      3      3
  XQ GAIN WILD-TYPE     20     21     19
D30V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3                21
  CLUS_3               3                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        0      3      2      1      0      0      0
  XQ GAIN WILD-TYPE     18      8     10      5      5      5      9
D30V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                18
  CLUS_2               3                 8
  CLUS_3               2                10
  CLUS_4               1                 5
  CLUS_5               0                 5
  CLUS_6               0                 5
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V7, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED    0  5
  XQ GAIN WILD-TYPE 19 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      0    5
  XQ GAIN WILD-TYPE   19   24
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                19
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ GAIN MUTATED        2      3      0      0      0      0      0      0
  XQ GAIN WILD-TYPE      8      3      5      8      4      6      5      4
D30V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                 8
  CLUS_2               3                 3
  CLUS_3               0                 5
  CLUS_4               0                 8
  CLUS_5               0                 4
  CLUS_6               0                 6
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        5     36     12
  1P LOSS WILD-TYPE      0     11      2
D31V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              36                11
  CLUS_3              12                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       17     32      4
  1P LOSS WILD-TYPE      1      3      9
D31V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              32                 3
  CLUS_3               4                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       19     16     14      4
  1P LOSS WILD-TYPE      0      6      1      6
D31V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              16                 6
  CLUS_3              14                 1
  CLUS_4               4                 6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED       19     11      6      4      9      4      0
  1P LOSS WILD-TYPE      0      5      1      2      1      0      4
D31V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              11                 5
  CLUS_3               6                 1
  CLUS_4               4                 2
  CLUS_5               9                 1
  CLUS_6               4                 0
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       13     21     19
  1P LOSS WILD-TYPE      7      3      3
D31V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              21                 3
  CLUS_3              19                 3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED       18      8     11      4      4      5      3
  1P LOSS WILD-TYPE      0      3      1      2      1      0      6
D31V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18                 0
  CLUS_2               8                 3
  CLUS_3              11                 1
  CLUS_4               4                 2
  CLUS_5               4                 1
  CLUS_6               5                 0
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V7, binary
                   cls
clus                 0  1
  1P LOSS MUTATED   12 24
  1P LOSS WILD-TYPE  7  5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     12   24
  1P LOSS WILD-TYPE    7    5
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                 7
  CLUS_2              24                 5
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1P LOSS MUTATED        8      3      5      8      4      4      4      0
  1P LOSS WILD-TYPE      2      3      0      0      0      2      1      4
D31V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               3                 3
  CLUS_3               5                 0
  CLUS_4               8                 0
  CLUS_5               4                 0
  CLUS_6               4                 2
  CLUS_7               4                 1
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        5     35     12
  1Q LOSS WILD-TYPE      0     12      2
D32V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              35                12
  CLUS_3              12                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       17     32      3
  1Q LOSS WILD-TYPE      1      3     10
D32V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              32                 3
  CLUS_3               3                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       19     16     14      3
  1Q LOSS WILD-TYPE      0      6      1      7
D32V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              16                 6
  CLUS_3              14                 1
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED       19     11      5      3     10      4      0
  1Q LOSS WILD-TYPE      0      5      2      3      0      0      4
D32V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              11                 5
  CLUS_3               5                 2
  CLUS_4               3                 3
  CLUS_5              10                 0
  CLUS_6               4                 0
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       13     20     19
  1Q LOSS WILD-TYPE      7      4      3
D32V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              20                 4
  CLUS_3              19                 3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED       18      8     11      3      4      5      3
  1Q LOSS WILD-TYPE      0      3      1      3      1      0      6
D32V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              18                 0
  CLUS_2               8                 3
  CLUS_3              11                 1
  CLUS_4               3                 3
  CLUS_5               4                 1
  CLUS_6               5                 0
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V7, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED   12 24
  1Q LOSS WILD-TYPE  7  5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     12   24
  1Q LOSS WILD-TYPE    7    5
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              12                 7
  CLUS_2              24                 5
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1Q LOSS MUTATED        8      3      5      8      4      4      4      0
  1Q LOSS WILD-TYPE      2      3      0      0      0      2      1      4
D32V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               3                 3
  CLUS_3               5                 0
  CLUS_4               8                 0
  CLUS_5               4                 0
  CLUS_6               4                 2
  CLUS_7               4                 1
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5     29     12
  2P LOSS WILD-TYPE      0     18      2
D33V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              29                18
  CLUS_3              12                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       17     28      1
  2P LOSS WILD-TYPE      1      7     12
D33V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              28                 7
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED       19     14     13      0
  2P LOSS WILD-TYPE      0      8      2     10
D33V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              14                 8
  CLUS_3              13                 2
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED       19     10      4      0     10      3      0
  2P LOSS WILD-TYPE      0      6      3      6      0      1      4
D33V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              10                 6
  CLUS_3               4                 3
  CLUS_4               0                 6
  CLUS_5              10                 0
  CLUS_6               3                 1
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       10     19     17
  2P LOSS WILD-TYPE     10      5      5
D33V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              10                10
  CLUS_2              19                 5
  CLUS_3              17                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED       18      7     10      2      3      5      1
  2P LOSS WILD-TYPE      0      4      2      4      2      0      8
D33V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              18                 0
  CLUS_2               7                 4
  CLUS_3              10                 2
  CLUS_4               2                 4
  CLUS_5               3                 2
  CLUS_6               5                 0
  CLUS_7               1                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V7, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    9 23
  2P LOSS WILD-TYPE 10  6
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      9   23
  2P LOSS WILD-TYPE   10    6
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9                10
  CLUS_2              23                 6
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2P LOSS MUTATED        8      2      5      8      4      3      2      0
  2P LOSS WILD-TYPE      2      4      0      0      0      3      3      4
D33V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               2                 4
  CLUS_3               5                 0
  CLUS_4               8                 0
  CLUS_5               4                 0
  CLUS_6               3                 3
  CLUS_7               2                 3
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5     29     12
  2Q LOSS WILD-TYPE      0     18      2
D34V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              29                18
  CLUS_3              12                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       17     28      1
  2Q LOSS WILD-TYPE      1      7     12
D34V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              28                 7
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED       19     14     13      0
  2Q LOSS WILD-TYPE      0      8      2     10
D34V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              14                 8
  CLUS_3              13                 2
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED       19     10      4      0     10      3      0
  2Q LOSS WILD-TYPE      0      6      3      6      0      1      4
D34V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              10                 6
  CLUS_3               4                 3
  CLUS_4               0                 6
  CLUS_5              10                 0
  CLUS_6               3                 1
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       10     19     17
  2Q LOSS WILD-TYPE     10      5      5
D34V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              10                10
  CLUS_2              19                 5
  CLUS_3              17                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED       18      7     10      2      3      5      1
  2Q LOSS WILD-TYPE      0      4      2      4      2      0      8
D34V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              18                 0
  CLUS_2               7                 4
  CLUS_3              10                 2
  CLUS_4               2                 4
  CLUS_5               3                 2
  CLUS_6               5                 0
  CLUS_7               1                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V7, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    9 23
  2Q LOSS WILD-TYPE 10  6
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      9   23
  2Q LOSS WILD-TYPE   10    6
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9                10
  CLUS_2              23                 6
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2Q LOSS MUTATED        8      2      5      8      4      3      2      0
  2Q LOSS WILD-TYPE      2      4      0      0      0      3      3      4
D34V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               2                 4
  CLUS_3               5                 0
  CLUS_4               8                 0
  CLUS_5               4                 0
  CLUS_6               3                 3
  CLUS_7               2                 3
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        0      4      5
  3P LOSS WILD-TYPE      5     43      9
D35V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               4                43
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        3      5      1
  3P LOSS WILD-TYPE     15     30     12
D35V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        0      6      2      1
  3P LOSS WILD-TYPE     19     16     13      9
D35V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               1                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED        0      6      0      1      0      2      0
  3P LOSS WILD-TYPE     19     10      7      5     10      2      4
D35V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                10
  CLUS_3               0                 7
  CLUS_4               1                 5
  CLUS_5               0                10
  CLUS_6               2                 2
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        2      4      3
  3P LOSS WILD-TYPE     18     20     19
D35V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                18
  CLUS_2               4                20
  CLUS_3               3                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED        1      4      2      1      1      0      0
  3P LOSS WILD-TYPE     17      7     10      5      4      5      9
D35V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               4                 7
  CLUS_3               2                10
  CLUS_4               1                 5
  CLUS_5               1                 4
  CLUS_6               0                 5
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V7, binary
                   cls
clus                 0  1
  3P LOSS MUTATED    1  5
  3P LOSS WILD-TYPE 18 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      1    5
  3P LOSS WILD-TYPE   18   24
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P LOSS MUTATED        1      2      1      1      0      1      0      0
  3P LOSS WILD-TYPE      9      4      4      7      4      5      5      4
D35V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               2                 4
  CLUS_3               1                 4
  CLUS_4               1                 7
  CLUS_5               0                 4
  CLUS_6               1                 5
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      3      5
  3Q LOSS WILD-TYPE      5     44      9
D36V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                44
  CLUS_3               5                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      5      0
  3Q LOSS WILD-TYPE     15     30     13
D36V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               5                30
  CLUS_3               0                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        0      6      2      0
  3Q LOSS WILD-TYPE     19     16     13     10
D36V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED        0      6      0      0      0      2      0
  3Q LOSS WILD-TYPE     19     10      7      6     10      2      4
D36V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                10
  CLUS_3               0                 7
  CLUS_4               0                 6
  CLUS_5               0                10
  CLUS_6               2                 2
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      4      3
  3Q LOSS WILD-TYPE     19     20     19
D36V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               4                20
  CLUS_3               3                19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED        1      4      2      1      0      0      0
  3Q LOSS WILD-TYPE     17      7     10      5      5      5      9
D36V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               4                 7
  CLUS_3               2                10
  CLUS_4               1                 5
  CLUS_5               0                 5
  CLUS_6               0                 5
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V7, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    0  5
  3Q LOSS WILD-TYPE 19 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0    5
  3Q LOSS WILD-TYPE   19   24
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q LOSS MUTATED        1      2      1      1      0      0      0      0
  3Q LOSS WILD-TYPE      9      4      4      7      4      6      5      4
D36V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               2                 4
  CLUS_3               1                 4
  CLUS_4               1                 7
  CLUS_5               0                 4
  CLUS_6               0                 6
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        0     10      0
  5P LOSS WILD-TYPE      5     37     14
D37V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              10                37
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      8      1
  5P LOSS WILD-TYPE     17     27     12
D37V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               8                27
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        1      9      0      0
  5P LOSS WILD-TYPE     18     13     15     10
D37V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               9                13
  CLUS_3               0                15
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        1      6      3      0      0      0      0
  5P LOSS WILD-TYPE     18     10      4      6     10      4      4
D37V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               6                10
  CLUS_3               3                 4
  CLUS_4               0                 6
  CLUS_5               0                10
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      2      5
  5P LOSS WILD-TYPE     17     22     17
D37V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               2                22
  CLUS_3               5                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED        0      2      3      1      3      1      0
  5P LOSS WILD-TYPE     18      9      9      5      2      4      9
D37V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                18
  CLUS_2               2                 9
  CLUS_3               3                 9
  CLUS_4               1                 5
  CLUS_5               3                 2
  CLUS_6               1                 4
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V7, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    2  6
  5P LOSS WILD-TYPE 17 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      2    6
  5P LOSS WILD-TYPE   17   23
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                17
  CLUS_2               6                23
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P LOSS MUTATED        0      2      1      3      0      1      1      0
  5P LOSS WILD-TYPE     10      4      4      5      4      5      4      4
D37V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               0                10
  CLUS_2               2                 4
  CLUS_3               1                 4
  CLUS_4               3                 5
  CLUS_5               0                 4
  CLUS_6               1                 5
  CLUS_7               1                 4
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        0     10      0
  5Q LOSS WILD-TYPE      5     37     14
D38V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2              10                37
  CLUS_3               0                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        1      8      1
  5Q LOSS WILD-TYPE     17     27     12
D38V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               8                27
  CLUS_3               1                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      9      0      0
  5Q LOSS WILD-TYPE     18     13     15     10
D38V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               9                13
  CLUS_3               0                15
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        1      6      3      0      0      0      0
  5Q LOSS WILD-TYPE     18     10      4      6     10      4      4
D38V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               6                10
  CLUS_3               3                 4
  CLUS_4               0                 6
  CLUS_5               0                10
  CLUS_6               0                 4
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        3      2      5
  5Q LOSS WILD-TYPE     17     22     17
D38V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               2                22
  CLUS_3               5                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED        0      2      3      1      3      1      0
  5Q LOSS WILD-TYPE     18      9      9      5      2      4      9
D38V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                18
  CLUS_2               2                 9
  CLUS_3               3                 9
  CLUS_4               1                 5
  CLUS_5               3                 2
  CLUS_6               1                 4
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V7, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED    2  6
  5Q LOSS WILD-TYPE 17 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      2    6
  5Q LOSS WILD-TYPE   17   23
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                17
  CLUS_2               6                23
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q LOSS MUTATED        0      2      1      3      0      1      1      0
  5Q LOSS WILD-TYPE     10      4      4      5      4      5      4      4
D38V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               0                10
  CLUS_2               2                 4
  CLUS_3               1                 4
  CLUS_4               3                 5
  CLUS_5               0                 4
  CLUS_6               1                 5
  CLUS_7               1                 4
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        5     34     12
  6P LOSS WILD-TYPE      0     13      2
D39V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              34                13
  CLUS_3              12                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       17     30      4
  6P LOSS WILD-TYPE      1      5      9
D39V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              30                 5
  CLUS_3               4                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED       19     15     14      3
  6P LOSS WILD-TYPE      0      7      1      7
D39V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              15                 7
  CLUS_3              14                 1
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED       19     11      6      1     10      4      0
  6P LOSS WILD-TYPE      0      5      1      5      0      0      4
D39V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              11                 5
  CLUS_3               6                 1
  CLUS_4               1                 5
  CLUS_5              10                 0
  CLUS_6               4                 0
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       13     20     18
  6P LOSS WILD-TYPE      7      4      4
D39V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              20                 4
  CLUS_3              18                 4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED       18      8     10      3      4      5      3
  6P LOSS WILD-TYPE      0      3      2      3      1      0      6
D39V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              18                 0
  CLUS_2               8                 3
  CLUS_3              10                 2
  CLUS_4               3                 3
  CLUS_5               4                 1
  CLUS_6               5                 0
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V7, binary
                   cls
clus                 0  1
  6P LOSS MUTATED   12 24
  6P LOSS WILD-TYPE  7  5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     12   24
  6P LOSS WILD-TYPE    7    5
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12                 7
  CLUS_2              24                 5
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6P LOSS MUTATED        8      3      5      8      4      6      2      0
  6P LOSS WILD-TYPE      2      3      0      0      0      0      3      4
D39V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               3                 3
  CLUS_3               5                 0
  CLUS_4               8                 0
  CLUS_5               4                 0
  CLUS_6               6                 0
  CLUS_7               2                 3
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5     34     12
  6Q LOSS WILD-TYPE      0     13      2
D40V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                 0
  CLUS_2              34                13
  CLUS_3              12                 2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       17     30      4
  6Q LOSS WILD-TYPE      1      5      9
D40V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2              30                 5
  CLUS_3               4                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       19     15     14      3
  6Q LOSS WILD-TYPE      0      7      1      7
D40V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              15                 7
  CLUS_3              14                 1
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED       19     11      6      1     10      4      0
  6Q LOSS WILD-TYPE      0      5      1      5      0      0      4
D40V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              19                 0
  CLUS_2              11                 5
  CLUS_3               6                 1
  CLUS_4               1                 5
  CLUS_5              10                 0
  CLUS_6               4                 0
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       13     20     18
  6Q LOSS WILD-TYPE      7      4      4
D40V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              13                 7
  CLUS_2              20                 4
  CLUS_3              18                 4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED       18      8     10      3      4      5      3
  6Q LOSS WILD-TYPE      0      3      2      3      1      0      6
D40V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              18                 0
  CLUS_2               8                 3
  CLUS_3              10                 2
  CLUS_4               3                 3
  CLUS_5               4                 1
  CLUS_6               5                 0
  CLUS_7               3                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V7, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED   12 24
  6Q LOSS WILD-TYPE  7  5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     12   24
  6Q LOSS WILD-TYPE    7    5
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              12                 7
  CLUS_2              24                 5
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6Q LOSS MUTATED        8      3      5      8      4      6      2      0
  6Q LOSS WILD-TYPE      2      3      0      0      0      0      3      4
D40V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               3                 3
  CLUS_3               5                 0
  CLUS_4               8                 0
  CLUS_5               4                 0
  CLUS_6               6                 0
  CLUS_7               2                 3
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        0      0      9
  8P LOSS WILD-TYPE      5     47      5
D41V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               0                47
  CLUS_3               9                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      4      0
  8P LOSS WILD-TYPE     13     31     13
D41V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               4                31
  CLUS_3               0                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        6      1      2      0
  8P LOSS WILD-TYPE     13     21     13     10
D41V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                13
  CLUS_2               1                21
  CLUS_3               2                13
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        6      1      0      0      0      2      0
  8P LOSS WILD-TYPE     13     15      7      6     10      2      4
D41V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               6                13
  CLUS_2               1                15
  CLUS_3               0                 7
  CLUS_4               0                 6
  CLUS_5               0                10
  CLUS_6               2                 2
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      6      2
  8P LOSS WILD-TYPE     19     18     20
D41V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               6                18
  CLUS_3               2                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        4      3      1      0      0      1      0
  8P LOSS WILD-TYPE     14      8     11      6      5      4      9
D41V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                14
  CLUS_2               3                 8
  CLUS_3               1                11
  CLUS_4               0                 6
  CLUS_5               0                 5
  CLUS_6               1                 4
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V7, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    0  5
  8P LOSS WILD-TYPE 19 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      0    5
  8P LOSS WILD-TYPE   19   24
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P LOSS MUTATED        1      0      2      2      0      0      0      0
  8P LOSS WILD-TYPE      9      6      3      6      4      6      5      4
D41V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               2                 3
  CLUS_4               2                 6
  CLUS_5               0                 4
  CLUS_6               0                 6
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      0      8
  8Q LOSS WILD-TYPE      5     47      6
D42V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               0                47
  CLUS_3               8                 6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        5      3      0
  8Q LOSS WILD-TYPE     13     32     13
D42V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                13
  CLUS_2               3                32
  CLUS_3               0                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        5      1      2      0
  8Q LOSS WILD-TYPE     14     21     13     10
D42V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                14
  CLUS_2               1                21
  CLUS_3               2                13
  CLUS_4               0                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        5      1      0      0      0      2      0
  8Q LOSS WILD-TYPE     14     15      7      6     10      2      4
D42V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5                14
  CLUS_2               1                15
  CLUS_3               0                 7
  CLUS_4               0                 6
  CLUS_5               0                10
  CLUS_6               2                 2
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      5      2
  8Q LOSS WILD-TYPE     19     19     20
D42V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                19
  CLUS_2               5                19
  CLUS_3               2                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        3      3      1      0      0      1      0
  8Q LOSS WILD-TYPE     15      8     11      6      5      4      9
D42V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                15
  CLUS_2               3                 8
  CLUS_3               1                11
  CLUS_4               0                 6
  CLUS_5               0                 5
  CLUS_6               1                 4
  CLUS_7               0                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V7, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    0  5
  8Q LOSS WILD-TYPE 19 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0    5
  8Q LOSS WILD-TYPE   19   24
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               5                24
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q LOSS MUTATED        1      0      2      2      0      0      0      0
  8Q LOSS WILD-TYPE      9      6      3      6      4      6      5      4
D42V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               0                 6
  CLUS_3               2                 3
  CLUS_4               2                 6
  CLUS_5               0                 4
  CLUS_6               0                 6
  CLUS_7               0                 5
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        0      8      2
  9P LOSS WILD-TYPE      5     39     12
D43V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        2      6      2
  9P LOSS WILD-TYPE     16     29     11
D43V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               6                29
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        0      6      2      2
  9P LOSS WILD-TYPE     19     16     13      8
D43V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED        0      3      4      1      1      1      0
  9P LOSS WILD-TYPE     19     13      3      5      9      3      4
D43V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                13
  CLUS_3               4                 3
  CLUS_4               1                 5
  CLUS_5               1                 9
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        3      3      4
  9P LOSS WILD-TYPE     17     21     18
D43V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               3                21
  CLUS_3               4                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED        1      2      3      0      1      1      2
  9P LOSS WILD-TYPE     17      9      9      6      4      4      7
D43V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                 9
  CLUS_3               3                 9
  CLUS_4               0                 6
  CLUS_5               1                 4
  CLUS_6               1                 4
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V7, binary
                   cls
clus                 0  1
  9P LOSS MUTATED    4  4
  9P LOSS WILD-TYPE 15 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      4    4
  9P LOSS WILD-TYPE   15   25
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                15
  CLUS_2               4                25
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P LOSS MUTATED        1      1      1      1      1      1      2      0
  9P LOSS WILD-TYPE      9      5      4      7      3      5      3      4
D43V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               1                 4
  CLUS_4               1                 7
  CLUS_5               1                 3
  CLUS_6               1                 5
  CLUS_7               2                 3
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        0      8      2
  9Q LOSS WILD-TYPE      5     39     12
D44V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               8                39
  CLUS_3               2                12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        2      6      2
  9Q LOSS WILD-TYPE     16     29     11
D44V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                16
  CLUS_2               6                29
  CLUS_3               2                11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        0      6      2      2
  9Q LOSS WILD-TYPE     19     16     13      8
D44V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                16
  CLUS_3               2                13
  CLUS_4               2                 8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED        0      3      4      1      1      1      0
  9Q LOSS WILD-TYPE     19     13      3      5      9      3      4
D44V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                13
  CLUS_3               4                 3
  CLUS_4               1                 5
  CLUS_5               1                 9
  CLUS_6               1                 3
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        3      3      4
  9Q LOSS WILD-TYPE     17     21     18
D44V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                17
  CLUS_2               3                21
  CLUS_3               4                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED        1      2      3      0      1      1      2
  9Q LOSS WILD-TYPE     17      9      9      6      4      4      7
D44V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               1                17
  CLUS_2               2                 9
  CLUS_3               3                 9
  CLUS_4               0                 6
  CLUS_5               1                 4
  CLUS_6               1                 4
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V7, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    4  4
  9Q LOSS WILD-TYPE 15 25
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      4    4
  9Q LOSS WILD-TYPE   15   25
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                15
  CLUS_2               4                25
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q LOSS MUTATED        1      1      1      1      1      1      2      0
  9Q LOSS WILD-TYPE      9      5      4      7      3      5      3      4
D44V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               1                 9
  CLUS_2               1                 5
  CLUS_3               1                 4
  CLUS_4               1                 7
  CLUS_5               1                 3
  CLUS_6               1                 5
  CLUS_7               2                 3
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        5     32     11
  10P LOSS WILD-TYPE      0     15      3
D45V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               32                 15
  CLUS_3               11                  3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       17     27      4
  10P LOSS WILD-TYPE      1      8      9
D45V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               27                  8
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       19     13     13      3
  10P LOSS WILD-TYPE      0      9      2      7
D45V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               13                  9
  CLUS_3               13                  2
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       19      8      6      2     10      3      0
  10P LOSS WILD-TYPE      0      8      1      4      0      1      4
D45V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2                8                  8
  CLUS_3                6                  1
  CLUS_4                2                  4
  CLUS_5               10                  0
  CLUS_6                3                  1
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       12     18     18
  10P LOSS WILD-TYPE      8      6      4
D45V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               12                  8
  CLUS_2               18                  6
  CLUS_3               18                  4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       18      6     11      2      4      4      3
  10P LOSS WILD-TYPE      0      5      1      4      1      1      6
D45V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               18                  0
  CLUS_2                6                  5
  CLUS_3               11                  1
  CLUS_4                2                  4
  CLUS_5                4                  1
  CLUS_6                4                  1
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V7, binary
                    cls
clus                  0  1
  10P LOSS MUTATED   12 20
  10P LOSS WILD-TYPE  7  9
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     12   20
  10P LOSS WILD-TYPE    7    9
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               12                  7
  CLUS_2               20                  9
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P LOSS MUTATED        8      2      4      7      4      5      2      0
  10P LOSS WILD-TYPE      2      4      1      1      0      1      3      4
D45V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                8                  2
  CLUS_2                2                  4
  CLUS_3                4                  1
  CLUS_4                7                  1
  CLUS_5                4                  0
  CLUS_6                5                  1
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        5     32     12
  10Q LOSS WILD-TYPE      0     15      2
D46V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               32                 15
  CLUS_3               12                  2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       17     28      4
  10Q LOSS WILD-TYPE      1      7      9
D46V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               28                  7
  CLUS_3                4                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       19     13     14      3
  10Q LOSS WILD-TYPE      0      9      1      7
D46V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               13                  9
  CLUS_3               14                  1
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       19      8      6      2     10      4      0
  10Q LOSS WILD-TYPE      0      8      1      4      0      0      4
D46V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2                8                  8
  CLUS_3                6                  1
  CLUS_4                2                  4
  CLUS_5               10                  0
  CLUS_6                4                  0
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       12     19     18
  10Q LOSS WILD-TYPE      8      5      4
D46V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               12                  8
  CLUS_2               19                  5
  CLUS_3               18                  4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       18      7     11      2      4      4      3
  10Q LOSS WILD-TYPE      0      4      1      4      1      1      6
D46V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               18                  0
  CLUS_2                7                  4
  CLUS_3               11                  1
  CLUS_4                2                  4
  CLUS_5                4                  1
  CLUS_6                4                  1
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V7, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED   12 21
  10Q LOSS WILD-TYPE  7  8
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     12   21
  10Q LOSS WILD-TYPE    7    8
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               12                  7
  CLUS_2               21                  8
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10Q LOSS MUTATED        8      2      5      7      4      5      2      0
  10Q LOSS WILD-TYPE      2      4      0      1      0      1      3      4
D46V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                8                  2
  CLUS_2                2                  4
  CLUS_3                5                  0
  CLUS_4                7                  1
  CLUS_5                4                  0
  CLUS_6                5                  1
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      5      1
  11P LOSS WILD-TYPE      4     42     13
D47V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                5                 42
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        3      3      1
  11P LOSS WILD-TYPE     15     32     12
D47V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                3                 32
  CLUS_3                1                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        4      0      2      1
  11P LOSS WILD-TYPE     15     22     13      9
D47V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED        4      0      1      0      1      1      0
  11P LOSS WILD-TYPE     15     16      6      6      9      3      4
D47V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                0                 16
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                1                  9
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      5      1
  11P LOSS WILD-TYPE     19     19     21
D47V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                5                 19
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED        3      2      1      0      0      0      1
  11P LOSS WILD-TYPE     15      9     11      6      5      5      8
D47V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                2                  9
  CLUS_3                1                 11
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                0                  5
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V7, binary
                    cls
clus                  0  1
  11P LOSS MUTATED    1  5
  11P LOSS WILD-TYPE 18 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1    5
  11P LOSS WILD-TYPE   18   24
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                5                 24
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P LOSS MUTATED        1      0      2      1      1      1      0      0
  11P LOSS WILD-TYPE      9      6      3      7      3      5      5      4
D47V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                2                  3
  CLUS_4                1                  7
  CLUS_5                1                  3
  CLUS_6                1                  5
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      5      1
  11Q LOSS WILD-TYPE      4     42     13
D48V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                5                 42
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      3      1
  11Q LOSS WILD-TYPE     15     32     12
D48V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                3                 32
  CLUS_3                1                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        4      0      2      1
  11Q LOSS WILD-TYPE     15     22     13      9
D48V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED        4      0      1      0      1      1      0
  11Q LOSS WILD-TYPE     15     16      6      6      9      3      4
D48V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                0                 16
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                1                  9
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1      5      1
  11Q LOSS WILD-TYPE     19     19     21
D48V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                5                 19
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED        3      2      1      0      0      0      1
  11Q LOSS WILD-TYPE     15      9     11      6      5      5      8
D48V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                2                  9
  CLUS_3                1                 11
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                0                  5
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V7, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED    1  5
  11Q LOSS WILD-TYPE 18 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      1    5
  11Q LOSS WILD-TYPE   18   24
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                5                 24
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q LOSS MUTATED        1      0      2      1      1      1      0      0
  11Q LOSS WILD-TYPE      9      6      3      7      3      5      5      4
D48V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                2                  3
  CLUS_4                1                  7
  CLUS_5                1                  3
  CLUS_6                1                  5
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        5     29      9
  13Q LOSS WILD-TYPE      0     18      5
D49V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               29                 18
  CLUS_3                9                  5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       11     29      3
  13Q LOSS WILD-TYPE      7      6     10
D49V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               11                  7
  CLUS_2               29                  6
  CLUS_3                3                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       15     13     13      2
  13Q LOSS WILD-TYPE      4      9      2      8
D49V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               15                  4
  CLUS_2               13                  9
  CLUS_3               13                  2
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       15     10      5      0     10      3      0
  13Q LOSS WILD-TYPE      4      6      2      6      0      1      4
D49V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               15                  4
  CLUS_2               10                  6
  CLUS_3                5                  2
  CLUS_4                0                  6
  CLUS_5               10                  0
  CLUS_6                3                  1
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       12     16     15
  13Q LOSS WILD-TYPE      8      8      7
D49V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               12                  8
  CLUS_2               16                  8
  CLUS_3               15                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       14      7      8      3      3      5      3
  13Q LOSS WILD-TYPE      4      4      4      3      2      0      6
D49V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                  4
  CLUS_2                7                  4
  CLUS_3                8                  4
  CLUS_4                3                  3
  CLUS_5                3                  2
  CLUS_6                5                  0
  CLUS_7                3                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V7, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED   11 20
  13Q LOSS WILD-TYPE  8  9
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     11   20
  13Q LOSS WILD-TYPE    8    9
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               11                  8
  CLUS_2               20                  9
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  13Q LOSS MUTATED        7      3      2      8      4      5      2      0
  13Q LOSS WILD-TYPE      3      3      3      0      0      1      3      4
D49V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                7                  3
  CLUS_2                3                  3
  CLUS_3                2                  3
  CLUS_4                8                  0
  CLUS_5                4                  0
  CLUS_6                5                  1
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      4      0
  16P LOSS WILD-TYPE      5     43     14
D50V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                4                 43
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      3      1
  16P LOSS WILD-TYPE     18     32     12
D50V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                 32
  CLUS_3                1                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        0      0      3      1
  16P LOSS WILD-TYPE     19     22     12      9
D50V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 22
  CLUS_3                3                 12
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        0      0      1      0      3      0      0
  16P LOSS WILD-TYPE     19     16      6      6      7      4      4
D50V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 16
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                3                  7
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      1      1
  16P LOSS WILD-TYPE     18     23     21
D50V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 23
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        1      0      0      0      0      2      1
  16P LOSS WILD-TYPE     17     11     12      6      5      3      8
D50V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                 11
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                2                  3
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V7, binary
                    cls
clus                  0  1
  16P LOSS MUTATED    3  1
  16P LOSS WILD-TYPE 16 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      3    1
  16P LOSS WILD-TYPE   16   28
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                1                 28
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P LOSS MUTATED        1      0      0      1      0      1      1      0
  16P LOSS WILD-TYPE      9      6      5      7      4      5      4      4
D50V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                0                  5
  CLUS_4                1                  7
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      5      0
  16Q LOSS WILD-TYPE      5     42     14
D51V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                5                 42
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      4      1
  16Q LOSS WILD-TYPE     18     31     12
D51V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                4                 31
  CLUS_3                1                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        0      0      4      1
  16Q LOSS WILD-TYPE     19     22     11      9
D51V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 22
  CLUS_3                4                 11
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        0      0      1      0      4      0      0
  16Q LOSS WILD-TYPE     19     16      6      6      6      4      4
D51V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 16
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                4                  6
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      1      1
  16Q LOSS WILD-TYPE     17     23     21
D51V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                1                 23
  CLUS_3                1                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        1      0      0      0      0      2      2
  16Q LOSS WILD-TYPE     17     11     12      6      5      3      7
D51V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                0                 11
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                2                  3
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V7, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED    4  1
  16Q LOSS WILD-TYPE 15 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      4    1
  16Q LOSS WILD-TYPE   15   28
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                1                 28
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q LOSS MUTATED        1      0      0      1      0      2      1      0
  16Q LOSS WILD-TYPE      9      6      5      7      4      4      4      4
D51V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                0                  5
  CLUS_4                1                  7
  CLUS_5                0                  4
  CLUS_6                2                  4
  CLUS_7                1                  4
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        5     33     12
  17P LOSS WILD-TYPE      0     14      2
D52V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               33                 14
  CLUS_3               12                  2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       17     31      2
  17P LOSS WILD-TYPE      1      4     11
D52V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               31                  4
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       19     16     14      1
  17P LOSS WILD-TYPE      0      6      1      9
D52V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               16                  6
  CLUS_3               14                  1
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED       19     11      6      0     10      4      0
  17P LOSS WILD-TYPE      0      5      1      6      0      0      4
D52V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               11                  5
  CLUS_3                6                  1
  CLUS_4                0                  6
  CLUS_5               10                  0
  CLUS_6                4                  0
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       11     20     19
  17P LOSS WILD-TYPE      9      4      3
D52V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               11                  9
  CLUS_2               20                  4
  CLUS_3               19                  3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED       18      8     11      3      3      5      2
  17P LOSS WILD-TYPE      0      3      1      3      2      0      7
D52V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                  0
  CLUS_2                8                  3
  CLUS_3               11                  1
  CLUS_4                3                  3
  CLUS_5                3                  2
  CLUS_6                5                  0
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V7, binary
                    cls
clus                  0  1
  17P LOSS MUTATED   10 24
  17P LOSS WILD-TYPE  9  5
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     10   24
  17P LOSS WILD-TYPE    9    5
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                  9
  CLUS_2               24                  5
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17P LOSS MUTATED        8      3      5      8      4      4      2      0
  17P LOSS WILD-TYPE      2      3      0      0      0      2      3      4
D52V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                8                  2
  CLUS_2                3                  3
  CLUS_3                5                  0
  CLUS_4                8                  0
  CLUS_5                4                  0
  CLUS_6                4                  2
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5     33     12
  17Q LOSS WILD-TYPE      0     14      2
D53V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                  0
  CLUS_2               33                 14
  CLUS_3               12                  2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       17     31      2
  17Q LOSS WILD-TYPE      1      4     11
D53V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               17                  1
  CLUS_2               31                  4
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       19     16     14      1
  17Q LOSS WILD-TYPE      0      6      1      9
D53V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               16                  6
  CLUS_3               14                  1
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED       19     11      6      0     10      4      0
  17Q LOSS WILD-TYPE      0      5      1      6      0      0      4
D53V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                  0
  CLUS_2               11                  5
  CLUS_3                6                  1
  CLUS_4                0                  6
  CLUS_5               10                  0
  CLUS_6                4                  0
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       11     20     19
  17Q LOSS WILD-TYPE      9      4      3
D53V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                  9
  CLUS_2               20                  4
  CLUS_3               19                  3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED       18      8     11      3      3      5      2
  17Q LOSS WILD-TYPE      0      3      1      3      2      0      7
D53V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               18                  0
  CLUS_2                8                  3
  CLUS_3               11                  1
  CLUS_4                3                  3
  CLUS_5                3                  2
  CLUS_6                5                  0
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V7, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED   10 24
  17Q LOSS WILD-TYPE  9  5
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     10   24
  17Q LOSS WILD-TYPE    9    5
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                  9
  CLUS_2               24                  5
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17Q LOSS MUTATED        8      3      5      8      4      4      2      0
  17Q LOSS WILD-TYPE      2      3      0      0      0      2      3      4
D53V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                  2
  CLUS_2                3                  3
  CLUS_3                5                  0
  CLUS_4                8                  0
  CLUS_5                4                  0
  CLUS_6                4                  2
  CLUS_7                2                  3
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        1      6      1
  18P LOSS WILD-TYPE      4     41     13
D54V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                6                 41
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        0      7      1
  18P LOSS WILD-TYPE     18     28     12
D54V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                7                 28
  CLUS_3                1                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        1      2      4      1
  18P LOSS WILD-TYPE     18     20     11      9
D54V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                2                 20
  CLUS_3                4                 11
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED        1      2      1      0      4      0      0
  18P LOSS WILD-TYPE     18     14      6      6      6      4      4
D54V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                2                 14
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                4                  6
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        2      4      2
  18P LOSS WILD-TYPE     18     20     20
D54V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                4                 20
  CLUS_3                2                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED        3      1      2      0      1      0      1
  18P LOSS WILD-TYPE     15     10     10      6      4      5      8
D54V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                1                 10
  CLUS_3                2                 10
  CLUS_4                0                  6
  CLUS_5                1                  4
  CLUS_6                0                  5
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V7, binary
                    cls
clus                  0  1
  18P LOSS MUTATED    3  3
  18P LOSS WILD-TYPE 16 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      3    3
  18P LOSS WILD-TYPE   16   26
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                3                 26
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P LOSS MUTATED        2      0      0      2      1      1      0      0
  18P LOSS WILD-TYPE      8      6      5      6      3      5      5      4
D54V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                0                  5
  CLUS_4                2                  6
  CLUS_5                1                  3
  CLUS_6                1                  5
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        1      8      1
  18Q LOSS WILD-TYPE      4     39     13
D55V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                8                 39
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        0      8      2
  18Q LOSS WILD-TYPE     18     27     11
D55V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                8                 27
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        2      2      4      2
  18Q LOSS WILD-TYPE     17     20     11      8
D55V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 20
  CLUS_3                4                 11
  CLUS_4                2                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED        2      2      2      0      4      0      0
  18Q LOSS WILD-TYPE     17     14      5      6      6      4      4
D55V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                2                 14
  CLUS_3                2                  5
  CLUS_4                0                  6
  CLUS_5                4                  6
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3      5      2
  18Q LOSS WILD-TYPE     17     19     20
D55V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                5                 19
  CLUS_3                2                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED        4      1      2      0      1      0      2
  18Q LOSS WILD-TYPE     14     10     10      6      4      5      7
D55V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                 14
  CLUS_2                1                 10
  CLUS_3                2                 10
  CLUS_4                0                  6
  CLUS_5                1                  4
  CLUS_6                0                  5
  CLUS_7                2                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V7, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED    4  4
  18Q LOSS WILD-TYPE 15 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      4    4
  18Q LOSS WILD-TYPE   15   25
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                4                 25
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q LOSS MUTATED        3      0      0      2      1      2      0      0
  18Q LOSS WILD-TYPE      7      6      5      6      3      4      5      4
D55V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                0                  6
  CLUS_3                0                  5
  CLUS_4                2                  6
  CLUS_5                1                  3
  CLUS_6                2                  4
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        0      2      1
  19Q LOSS WILD-TYPE      5     45     13
D56V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                 45
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      1
  19Q LOSS WILD-TYPE     17     34     12
D56V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                 34
  CLUS_3                1                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        1      1      0      1
  19Q LOSS WILD-TYPE     18     21     15      9
D56V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 21
  CLUS_3                0                 15
  CLUS_4                1                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        1      1      1      0      0      0      0
  19Q LOSS WILD-TYPE     18     15      6      6     10      4      4
D56V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                1                 15
  CLUS_3                1                  6
  CLUS_4                0                  6
  CLUS_5                0                 10
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      2      0
  19Q LOSS WILD-TYPE     19     22     22
D56V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                2                 22
  CLUS_3                0                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        1      1      0      0      0      0      1
  19Q LOSS WILD-TYPE     17     10     12      6      5      5      8
D56V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                1                 10
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                0                  5
  CLUS_7                1                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V7, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    1  2
  19Q LOSS WILD-TYPE 18 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      1    2
  19Q LOSS WILD-TYPE   18   27
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                2                 27
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q LOSS MUTATED        1      0      1      0      0      1      0      0
  19Q LOSS WILD-TYPE      9      6      4      8      4      5      5      4
D56V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                  9
  CLUS_2                0                  6
  CLUS_3                1                  4
  CLUS_4                0                  8
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      3      0
  20P LOSS WILD-TYPE      4     44     14
D57V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                 44
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        1      3      0
  20P LOSS WILD-TYPE     17     32     13
D57V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                3                 32
  CLUS_3                0                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        2      0      2      0
  20P LOSS WILD-TYPE     17     22     13     10
D57V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        1      0      0      0      2      1      0
  20P LOSS WILD-TYPE     18     16      7      6      8      3      4
D57V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                0                 16
  CLUS_3                0                  7
  CLUS_4                0                  6
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        2      2      0
  20P LOSS WILD-TYPE     18     22     22
D57V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                2                 22
  CLUS_3                0                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        3      1      0      0      0      0      0
  20P LOSS WILD-TYPE     15     10     12      6      5      5      9
D57V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                1                 10
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                0                  5
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V7, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    3  1
  20P LOSS WILD-TYPE 16 28
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3    1
  20P LOSS WILD-TYPE   16   28
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                1                 28
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P LOSS MUTATED        2      0      0      0      1      1      0      0
  20P LOSS WILD-TYPE      8      6      5      8      3      5      5      4
D57V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                0                  5
  CLUS_4                0                  8
  CLUS_5                1                  3
  CLUS_6                1                  5
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      3      0
  20Q LOSS WILD-TYPE      5     44     14
D58V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                 44
  CLUS_3                0                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      3      0
  20Q LOSS WILD-TYPE     18     32     13
D58V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 18
  CLUS_2                3                 32
  CLUS_3                0                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      0      2      0
  20Q LOSS WILD-TYPE     18     22     13     10
D58V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                0                 22
  CLUS_3                2                 13
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        0      0      0      0      2      1      0
  20Q LOSS WILD-TYPE     19     16      7      6      8      3      4
D58V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                0                 16
  CLUS_3                0                  7
  CLUS_4                0                  6
  CLUS_5                2                  8
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      1      0
  20Q LOSS WILD-TYPE     18     23     22
D58V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                1                 23
  CLUS_3                0                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        2      1      0      0      0      0      0
  20Q LOSS WILD-TYPE     16     10     12      6      5      5      9
D58V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 16
  CLUS_2                1                 10
  CLUS_3                0                 12
  CLUS_4                0                  6
  CLUS_5                0                  5
  CLUS_6                0                  5
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V7, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    3  0
  20Q LOSS WILD-TYPE 16 29
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      3    0
  20Q LOSS WILD-TYPE   16   29
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                0                 29
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q LOSS MUTATED        2      0      0      0      0      1      0      0
  20Q LOSS WILD-TYPE      8      6      5      8      4      5      5      4
D58V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                  8
  CLUS_2                0                  6
  CLUS_3                0                  5
  CLUS_4                0                  8
  CLUS_5                0                  4
  CLUS_6                1                  5
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        2     26      7
  21Q LOSS WILD-TYPE      3     21      7
D59V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2               26                 21
  CLUS_3                7                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       12     21      2
  21Q LOSS WILD-TYPE      6     14     11
D59V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               12                  6
  CLUS_2               21                 14
  CLUS_3                2                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       13     12      7      3
  21Q LOSS WILD-TYPE      6     10      8      7
D59V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                  6
  CLUS_2               12                 10
  CLUS_3                7                  8
  CLUS_4                3                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED       13      9      4      2      6      1      0
  21Q LOSS WILD-TYPE      6      7      3      4      4      3      4
D59V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                  6
  CLUS_2                9                  7
  CLUS_3                4                  3
  CLUS_4                2                  4
  CLUS_5                6                  4
  CLUS_6                1                  3
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       10     13     12
  21Q LOSS WILD-TYPE     10     11     10
D59V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                 10
  CLUS_2               13                 11
  CLUS_3               12                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q LOSS MUTATED       13      4      9      2      1      2      4
  21Q LOSS WILD-TYPE      5      7      3      4      4      3      5
D59V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                  5
  CLUS_2                4                  7
  CLUS_3                9                  3
  CLUS_4                2                  4
  CLUS_5                1                  4
  CLUS_6                2                  3
  CLUS_7                4                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V7, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED   10 15
  21Q LOSS WILD-TYPE  9 14
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     10   15
  21Q LOSS WILD-TYPE    9   14
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                  9
  CLUS_2               15                 14
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q LOSS MUTATED        8      3      1      4      4      2      3      0
  21Q LOSS WILD-TYPE      2      3      4      4      0      4      2      4
D59V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                  2
  CLUS_2                3                  3
  CLUS_3                1                  4
  CLUS_4                4                  4
  CLUS_5                4                  0
  CLUS_6                2                  4
  CLUS_7                3                  2
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        0      7      1
  22Q LOSS WILD-TYPE      5     40     13
D60V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                7                 40
  CLUS_3                1                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      7      0
  22Q LOSS WILD-TYPE     17     28     13
D60V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 17
  CLUS_2                7                 28
  CLUS_3                0                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        1      5      2      0
  22Q LOSS WILD-TYPE     18     17     13     10
D60V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                5                 17
  CLUS_3                2                 13
  CLUS_4                0                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        1      5      0      0      2      0      0
  22Q LOSS WILD-TYPE     18     11      7      6      8      4      4
D60V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                5                 11
  CLUS_3                0                  7
  CLUS_4                0                  6
  CLUS_5                2                  8
  CLUS_6                0                  4
  CLUS_7                0                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        3      3      2
  22Q LOSS WILD-TYPE     17     21     20
D60V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                3                 21
  CLUS_3                2                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        3      0      1      1      1      2      0
  22Q LOSS WILD-TYPE     15     11     11      5      4      3      9
D60V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                 15
  CLUS_2                0                 11
  CLUS_3                1                 11
  CLUS_4                1                  5
  CLUS_5                1                  4
  CLUS_6                2                  3
  CLUS_7                0                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V7, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED    2  5
  22Q LOSS WILD-TYPE 17 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      2    5
  22Q LOSS WILD-TYPE   17   24
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                5                 24
[1] 2 2
[1] FALSE
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q LOSS MUTATED        3      1      0      3      0      0      0      0
  22Q LOSS WILD-TYPE      7      5      5      5      4      6      5      4
D60V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                  7
  CLUS_2                1                  5
  CLUS_3                0                  5
  CLUS_4                3                  5
  CLUS_5                0                  4
  CLUS_6                0                  6
  CLUS_7                0                  5
  CLUS_8                0                  4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4     26      9
  XQ LOSS WILD-TYPE      1     21      5
D61V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                 1
  CLUS_2              26                21
  CLUS_3               9                 5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       12     23      4
  XQ LOSS WILD-TYPE      6     12      9
D61V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                 6
  CLUS_2              23                12
  CLUS_3               4                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       15      9     12      3
  XQ LOSS WILD-TYPE      4     13      3      7
D61V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              15                 4
  CLUS_2               9                13
  CLUS_3              12                 3
  CLUS_4               3                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED       15      6      4      2      9      3      0
  XQ LOSS WILD-TYPE      4     10      3      4      1      1      4
D61V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              15                 4
  CLUS_2               6                10
  CLUS_3               4                 3
  CLUS_4               2                 4
  CLUS_5               9                 1
  CLUS_6               3                 1
  CLUS_7               0                 4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        9     15     15
  XQ LOSS WILD-TYPE     11      9      7
D61V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                11
  CLUS_2              15                 9
  CLUS_3              15                 7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED       17      4      7      2      3      4      2
  XQ LOSS WILD-TYPE      1      7      5      4      2      1      7
D61V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              17                 1
  CLUS_2               4                 7
  CLUS_3               7                 5
  CLUS_4               2                 4
  CLUS_5               3                 2
  CLUS_6               4                 1
  CLUS_7               2                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V7, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED   10 17
  XQ LOSS WILD-TYPE  9 12
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     10   17
  XQ LOSS WILD-TYPE    9   12
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              10                 9
  CLUS_2              17                12
[1] 2 2
[1] FALSE
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ LOSS MUTATED        8      1      2      6      3      3      4      0
  XQ LOSS WILD-TYPE      2      5      3      2      1      3      1      4
D61V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               8                 2
  CLUS_2               1                 5
  CLUS_3               2                 3
  CLUS_4               6                 2
  CLUS_5               3                 1
  CLUS_6               3                 3
  CLUS_7               4                 1
  CLUS_8               0                 4
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
