Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	G	C	tCw	wGa	tC	Ga	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	"CONTEXT(+/-20)"	g_counts	c_counts	tcw_counts	wga_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	x	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
UBR4	23352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	19480348	19480349	+	Missense_Mutation	DNP	GC	GC	TA													cagcggcacccctgtagtttGctggacacagcacaccaagc					novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		TA	19480349	GC	TA	19480348	3	4	1	1	0	0	0	0	1	0	0	0	17010	1328	46	5	9255	5	UBR4	1	19480348	Missense_Mutation	DNP	GC	TCGA-KL-8323-01A-21D-2310-10		19480348	229770273	1	1	1	2									
UBR4	23352	bcgsc.ca	37	chr1	19480349	19480349	+	Missense_Mutation	SNP	C	C	A													agcggcacccctgtagtttgCtggacacagcacaccaagcc					novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	19480349	C	A	19480349	3	1	1	1	0	0	0	0	1	0	0	0	17010	796	28	5	9256	5	UBR4	1	19480349	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	1	19480349	229770272	2	2	1	2									
AIM1L	55057	ucsc.edu	37	chr1	26664510	26664510	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagactcttaccctgggcTcccctggcttctccacactt	6	19	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	26664510	T	C	26664510	3	2	1	1	0	0	0	0	1	0	0	0	431	1551	54	2	1537	2	AIM1L	1	26664510	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	7184161	26664510	222586111	3	3											
ATF6	22926	ucsc.edu	37	chr1	161790871	161790871	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctttagaaccagaggctTaaagtccctagtccaaagcg	8	11	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	161790871	T	C	161790871	2	2	1	1	0	0	0	0	0	0	0	1	1088	1741	61	4		4	ATF6	1	161790871	Silent	SNP	T	TCGA-KL-8323-01A-21D-2310-10	135126361	161790871	87459750	4	4											
RC3H1	149041	broad.mit.edu	37	chr1	173912597	173912597	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatactcagttcccgtgTtctcttcccgatttcccttt	4	16	2	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	173912597	T	C	173912597	3	2	1	1	0	0	0	0	1	0	0	0	13258	1725	60	2	295	2	RC3H1	1	173912597	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	12121726	173912597	75338024	5	5											
RASAL2	9462	hgsc.bcm.edu	37	chr1	178421771	178421771	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccaaggtcattcagaacCtggccaactttgccaagtag	9	11	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	178421771	C	T	178421771	2	4	1	1	0	0	0	0	0	0	0	1	13156	680	24	4		4	RASAL2	1	178421771	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10	4509174	178421771	70828850	6	6											
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	228548164	228548164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggggcatgcactgggtccccGaggccctctcggcctcttta	13	15	2	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	228548164	G	A	228548164	3	1	1	1	0	0	0	0	1	0	0	0	10891	1058	37	1	19889	1	OBSCN	1	228548164	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	50126393	228548164	20702457	7	7											
OR2T8	343172	broad.mit.edu	37	chr1	248084369	248084369	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattctcctaggactctttaAccacaccagagcccaccaag	5	16	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	248084369	A	G	248084369	3	3	1	1	0	0	0	0	1	0	0	0	11109	43	2	2	52	2	OR2T8	1	248084369	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	19536205	248084369	1166252	8	8											
STRN	6801	ucsc.edu	37	chr2	37094995	37094995	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagataggttctacatcaagAgaagtgctcctaaatcagag	9	7	3	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	37094995	A	G	37094995	2	3	1	1	0	0	0	0	0	0	0	1	15429	291	11	2		2	STRN	2	37094995	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		37094995	206104378	9	9											
THADA	63892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	43507026	43507026	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttccagagagcaagtgtaTcctgcaactctaagaagacc	8	11	1	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	43507026	T	C	43507026	3	2	1	1	0	0	0	0	1	0	0	0	15944	1435	50	4	699	4	THADA	2	43507026	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	6412031	43507026	199692347	10	10											
SMYD1	150572	broad.mit.edu	37	chr2	88387571	88387571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagcagttcagcatgcagTacatctcgcacatcttcgga	9	13	3	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	88387571	T	C	88387571	3	2	1	1	0	0	0	0	1	0	0	0	14919	1638	57	2	515	2	SMYD1	2	88387571	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	44880545	88387571	154811802	11	11											
RGPD4	285190	ucsc.edu	37	chr2	108487266	108487266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaccaggaaatcaagaaaagGaaagtgaaaagcctcttgaa	9	6	2	3	rs3868856		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	108487266	G	A	108487266	3	1	1	1	0	0	0	0	1	0	0	0	13380	1175	41	3	2884	3	RGPD4	2	108487266	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	20099695	108487266	134712107	12	12											
CCDC74A	90557	broad.mit.edu;mdanderson.org	37	chr2	132290278	132290278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gatcctgccccttcccctgcGaaagcccaccacacttaggc	7	19	0	0	rs138310081	byfrequency	TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	132290278	G	A	132290278	3	1	1	1	0	0	0	0	1	0	0	0	2874	1058	37	1	818	1	CCDC74A	2	132290278	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	23803012	132290278	110909095	13	13											
CCDC74A	90557	broad.mit.edu;mdanderson.org	37	chr2	132290352	132290352	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaacctcctgcagacccaaGaggtgaggccctgggtggtg	14	13	0	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	132290352	G	C	132290352	3	2	1	1	0	0	0	0	1	0	0	0	2874	943	33	5	892	5	CCDC74A	2	132290352	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	74	132290352	110909021	14	14											
NEB	4703	broad.mit.edu	37	chr2	152350685	152350685	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacaataccgagctaatgTtttcttgattgcgtttgact	8	7	1	3	rs200544122		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	152350685	T	C	152350685	3	2	1	1	0	0	0	0	1	0	0	0	10381	1725	60	2	1044	2	NEB	2	152350685	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	20060333	152350685	90848688	15	15											
DLX2	1746	hgsc.bcm.edu	37	chr2	172966928	172966928	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaggaggtgtaggcggcGgtgtagcccaggtcatagct	18	8	1	0	rs143444914		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	172966928	G	T	172966928	2	4	1	1	0	0	0	0	0	0	0	1	4608	1103	39	5		5	DLX2	2	172966928	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	20616243	172966928	70232445	16	16											
HDAC4	9759	ucsc.edu	37	chr2	240033259	240033259	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtggggggctcctgcacAgacacggggaaggtggcaga	19	8	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	240033259	A	G	240033259	2	3	1	1	0	0	0	0	0	0	0	1	7067	175	7	2		2	HDAC4	2	240033259	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10	67066331	240033259	3166114	17	17											
GAL3ST2	64090	broad.mit.edu;ucsc.edu	37	chr2	242741375	242741375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacccctggctcttcctggCgcgctacgtggaaggcgtgg	14	14	1	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	242741375	C	T	242741375	3	4	1	1	0	0	0	0	1	0	0	0	6252	768	27	1	309	1	GAL3ST2	2	242741375	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	2708116	242741375	457998	18	18											
VILL	50853	broad.mit.edu	37	chr3	38040855	38040855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgattcatgtaaagctggaCgtgggcaagctgcacaccca	11	11	1	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	38040855	C	T	38040855	2	4	1	1	0	0	0	0	0	0	0	1	17271	535	19	1		1	VILL	3	38040855	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10		38040855	159981575	19	19											
GPR27	2850	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	71804279	71804279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctgccagagcccccGgaccacccaggcgacccatc	9	22	0	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	71804279	G	A	71804279	3	1	1	1	0	0	0	0	1	0	0	0	6742	1116	39	1	1081	1	GPR27	3	71804279	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	33763424	71804279	126218151	20	20											
VEPH1	79674	broad.mit.edu	37	chr3	157082297	157082297	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatttcagtgctgatttTtctcctaaaggaatataaat	5	6	3	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	157082297	T	C	157082297	3	2	1	1	0	0	0	0	1	0	0	0	17260	1850	64	4	1397	4	VEPH1	3	157082297	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	85278018	157082297	40940133	21	21											
ZBBX	79740	ucsc.edu	37	chr3	166960302	166960302	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttaacttacctcaattccTcaactccacagggacccctc	4	17	2	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	166960302	T	C	166960302	3	2	1	1	0	0	0	0	1	0	0	0	17622	1551	54	2	143	2	ZBBX	3	166960302	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	9878005	166960302	31062128	22	22											
AADAT	51166	broad.mit.edu	37	chr4	171009684	171009684	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagccaccagccaaggagatCatcgattttggtcctctgct	9	12	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	171009684	C	T	171009684	3	4	1	1	0	0	0	0	1	0	0	0	14	826	29	4	1226	4	AADAT	4	171009684	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10		171009684	20144592	23	23											
POU5F2	134187	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	93076393	93076393	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggagccccagtcccaggtGaaagcacactggtgctcctg	13	13	0	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	93076393	G	C	93076393	3	2	1	1	0	0	0	0	1	0	0	0	12363	1290	45	5	113	5	POU5F2	5	93076393	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		93076393	87838867	24	24											
MEGF10	84466	ucsc.edu	37	chr5	126755867	126755867	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcacgtgtgcacctggaTggcgcggggagaaatgcgaa	16	10	0	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	126755867	T	C	126755867	3	2	1	1	0	0	0	0	1	0	0	0	9537	1464	51	4	1600	4	MEGF10	5	126755867	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	33679474	126755867	54159393	25	25											
FAM153B	202134	broad.mit.edu	37	chr5	175530235	175530235	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtatcctcctagttctgAtcagggatgtacttcaggag	10	8	3	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	175530235	A	C	175530235	3	2	1	1	0	0	0	0	1	0	0	0	5504	333	12	5	720	5	FAM153B	5	175530235	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	48774368	175530235	5385025	26	26											
RMND1	55005	ucsc.edu	37	chr6	151744763	151744763	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctgtgaagttttgactgTcccctgtgaaaagcaaaaag	9	10	0	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	151744763	T	C	151744763	2	2	1	1	0	0	0	0	0	0	0	1	13491	1654	58	2		2	RMND1	6	151744763	Silent	SNP	T	TCGA-KL-8323-01A-21D-2310-10		151744763	19370304	27	27											
PTPRN2	5799	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	157931202	157931202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaggagggtatgaatccGtgctcctaggggcacacaca	12	11	1	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	157931202	G	A	157931202	3	1	1	1	0	0	0	0	1	0	0	0	12900	1144	40	1	2199	1	PTPRN2	7	157931202	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		157931202	1207461	28	28											
ADAM32	203102	ucsc.edu	37	chr8	38965348	38965348	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggcctcctggcgtcaagAcccggtgagccagcccagac	13	16	1	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	38965348	A	G	38965348	2	3	1	1	0	0	0	0	0	0	0	1	249	272	10	2		2	ADAM32	8	38965348	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		38965348	107398674	29	29											
NOXA1	10811	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	140327707	140327707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctgtgaggaccccgcgGgtgctggggtaagaggctct	17	12	1	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	140327707	G	A	140327707	3	1	1	1	0	0	0	0	1	0	0	0	10639	1232	43	3	939	3	NOXA1	9	140327707	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		140327707	885724	30	30											
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	16967262	16967262	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaactctttgcctcatatttGattttaaatccttgcccttc	3	11	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	16967262	G	A	16967262	2	1	1	1	0	0	0	0	0	0	0	1	4082	1280	45	4		4	CUBN	10	16967262	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10		16967262	118567485	31	31											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	89711966	89711966	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaccagtggcactgttgtTtcacaagatgatgtttgaaa	10	6	1	4	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	89711966	T	C	89711966	3	2	1	1	0	0	0	0	1	0	0	0	12827	1841	64	4	606	4	PTEN	10	89711966	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	72744704	89711966	45822781	32	32											
PHRF1	57661	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	605169	605169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggacgctgggcctgcgcagGcctgttcacagcagctgcat	14	14	1	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	605169	G	T	605169	3	4	1	1	0	0	0	0	1	0	0	0	11941	1194	42	5	1241	5	PHRF1	11	605169	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10		605169	134401347	33	33											
MUC5B	727897	broad.mit.edu	37	chr11	1270385	1270385	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caccccgggccacaccacggCcacctccaggaccacggcca	9	22	0	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	1270385	C	G	1270385	3	3	1	1	0	0	0	0	1	0	0	0	10057	739	26	5	12406	5	MUC5B	11	1270385	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	665216	1270385	133736131	34	34											
MED17	9440	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	93517753	93517753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtccatgaggtgggcctggAtggcaccgagacgtacctgc	16	11	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	93517753	A	G	93517753	3	3	1	1	0	0	0	0	1	0	0	0	9512	333	12	4	76	4	MED17	11	93517753	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	92247368	93517753	41488763	35	35											
LIMA1	51474	broad.mit.edu	37	chr12	50575718	50575718	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgcaataggagcaacggaAgcagctgatgtgaaacacct	12	8	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	50575718	A	G	50575718	3	3	1	1	0	0	0	0	1	0	0	0	8859	72	3	2	1044	2	LIMA1	12	50575718	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		50575718	83276177	36	36											
ALKBH2	121642	broad.mit.edu;ucsc.edu	37	chr12	109526037	109526037	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttagtaagcaaaattttacGaaaagtcagattcacccgtg	7	7	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	109526037	G	A	109526037	3	1	1	1	0	0	0	0	1	0	0	0	527	1058	37	1	29	1	ALKBH2	12	109526037	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	58950319	109526037	24325858	37	37											
HERC2	8924	broad.mit.edu	37	chr15	28447318	28447318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtcagaatactcgtcggAcaccgtgtctgcatctgaga	10	12	3	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	28447318	A	G	28447318	3	3	1	1	0	0	0	0	1	0	0	0	7116	275	10	2	7134	2	HERC2	15	28447318	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		28447318	74084074	38	38											
MESDC1	59274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	81295653	81295653	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcaggctttaagggagagGtcttcgcccaggactttacc	11	11	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	81295653	G	A	81295653	2	1	1	1	0	0	0	0	0	0	0	1	9557	1252	44	3		3	MESDC1	15	81295653	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	52848335	81295653	21235739	39	39											
NTRK3	4916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	88727494	88727494	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagagctccatgtccacggcGttgagcgtgtgaagactgcg	14	10	0	4	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	88727494	G	A	88727494	2	1	1	1	0	0	0	0	0	0	0	1	10787	1136	40	1		1	NTRK3	15	88727494	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	7431841	88727494	13803898	40	40											
KATNB1	10300	ucsc.edu	37	chr16	57788846	57788846	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccttttgcctccagacgcAgccacagcaaaggaggcagc	10	14	0	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	57788846	A	G	57788846	2	3	1	1	0	0	0	0	0	0	0	1	8048	175	7	2		2	KATNB1	16	57788846	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		57788846	32565907	41	41											
PRMT7	54496	ucsc.edu	37	chr16	68373380	68373380	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgacgtggagagctgcccTggcgcaccctctgtctgtga	14	12	2	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	68373380	T	C	68373380	2	2	1	1	0	0	0	0	0	0	0	1	12630	1567	55	2		2	PRMT7	16	68373380	Silent	SNP	T	TCGA-KL-8323-01A-21D-2310-10	10584534	68373380	21981373	42	42											
TNFSF13	8741	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	7462433	7462433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcccagtcagagagccggCactctcagttgccctctggt	13	14	3	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	7462433	C	T	7462433	3	4	1	1	0	0	0	0	1	0	0	0	16409	710	25	4	79	4	TNFSF13	17	7462433	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10		7462433	73732777	43	43											
MAPK7	5598	broad.mit.edu;mdanderson.org	37	chr17	19284374	19284374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtaccccatcaccagcCgtgattcaggctgtgggggc	14	13	2	1	rs145605078		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	19284374	C	T	19284374	2	4	1	1	0	0	0	0	0	0	0	1	9359	639	23	1		1	MAPK7	17	19284374	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10	11821941	19284374	61910836	44	44											
SPAG5	10615	broad.mit.edu	37	chr17	26910630	26910630	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgttttctccagatcttGctcctggttatctgctatgg	9	11	3	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	26910630	G	T	26910630	3	4	1	1	0	0	0	0	1	0	0	0	15081	1328	46	5	1037	5	SPAG5	17	26910630	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	7626256	26910630	54284580	45	45											
SOCS7	30837	broad.mit.edu	37	chr17	36520640	36520640	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgaatccctcaggtgaaActgtgtcgcttgtggatgtg	12	9	1	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	36520640	A	G	36520640	3	3	1	1	0	0	0	0	1	0	0	0	15017	43	2	2	869	2	SOCS7	17	36520640	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	9610010	36520640	44674570	46	46											
KRT20	54474	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr17	39041356	39041356	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgggtgtcgtcccgaggcGctgcatgcccactgtactga	14	13	0	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	39041356	G	A	39041356	3	1	1	1	0	0	0	0	1	0	0	0	8519	1087	38	1	1224	1	KRT20	17	39041356	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	2520716	39041356	42153854	47	47											
ITGA3	3675	bcgsc.ca	37	chr17	48165656	48165656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcagaaggcggagatgaAgagccagccgtcagagacag	17	8	1	5	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	48165656	A	G	48165656	3	3	1	1	0	0	0	0	1	0	0	0	7938	72	3	2	3211	2	ITGA3	17	48165656	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10	9124300	48165656	33029554	48	48											
SMURF2	64750	bcgsc.ca	37	chr17	62579654	62579654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccagaggcggttctccttTcttcccagcttaaataaaaa	6	11	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	62579654	T	C	62579654	3	2	1	1	0	0	0	0	1	0	0	0	14918	1783	62	4	1804	4	SMURF2	17	62579654	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	14413998	62579654	18615556	49	49											
GAA	2548	broad.mit.edu	37	chr17	78082576	78082576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggcttccgggacttcccGgccatggtgcaggagctgca	15	12	0	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	78082576	G	A	78082576	2	1	1	1	0	0	0	0	0	0	0	1	6199	1103	39	1		1	GAA	17	78082576	Silent	SNP	G	TCGA-KL-8323-01A-21D-2310-10	15502922	78082576	3112634	50	50											
LMAN1	3998	broad.mit.edu	37	chr18	57022610	57022610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagatcagctgatccaaAcacagggccctccaagcctt	7	16	1	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	57022610	A	G	57022610	3	3	1	1	0	0	0	0	1	0	0	0	8900	43	2	2	1164	2	LMAN1	18	57022610	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		57022610	21054638	51	51											
HMHA1	23526	broad.mit.edu;mdanderson.org	37	chr19	1084344	1084344	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcggcggacgggtgcagAggtgagtgtgtggctgcccg	22	9	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	1084344	A	G	1084344	2	3	1	1	0	0	0	0	0	0	0	1	7298	318	11	2		2	HMHA1	19	1084344	Silent	SNP	A	TCGA-KL-8323-01A-21D-2310-10		1084344	58044639	52	52											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	13476272	13476272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcatgatcgacttcaggaCgacttgtaaacctgggggga	12	9	2	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	13476272	C	T	13476272	3	4	1	1	0	0	0	0	1	0	0	0	2563	536	19	1	7163	1	CACNA1A	19	13476272	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	12391928	13476272	45652711	53	53											
ZNF257	113835	broad.mit.edu	37	chr19	22256335	22256335	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaaagagccctgtaatatGaagagacatgagatggtagc	13	5	0	4	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	22256335	G	A	22256335	3	1	1	1	0	0	0	0	1	0	0	0	17905	1290	45	4	205	4	ZNF257	19	22256335	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	8780063	22256335	36872648	54	54											
FFAR1	2864	broad.mit.edu	37	chr19	35842701	35842701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgctgtgccccgtcttcGcggtggcccacttcttccca	9	19	2	0	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		A	35842701	G	A	35842701	3	1	1	1	0	0	0	0	1	0	0	0	5876	1087	38	1	249	1	FFAR1	19	35842701	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	13586366	35842701	23286282	55	55											
WDR62	284403	broad.mit.edu;hgsc.bcm.edu	37	chr19	36558850	36558851	+	Frame_Shift_Ins	INS	-	-	AC													cagtaccttctgtgtgtcctINSactcgggcctcctctgccag					novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		AC	36558851	-	AC	36558850	7	5	1	1	0	1	1	0	0	0	0	0	17419	1522	53	0	846	0	WDR62	19	36558850	Frame_Shift_Ins	INS	-	TCGA-KL-8323-01A-21D-2310-10	716149	36558850	22570133	56	56											
HM13	81502	bcgsc.ca	37	chr20	30149459	30149459	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagaagaatacccacaccTacttctacaccagctttgca	5	13	1	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	30149459	T	C	30149459	3	2	1	1	0	0	0	0	1	0	0	0	7275	1522	53	2	973	2	HM13	20	30149459	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10		30149459	32876061	57	57											
PATZ1	23598	broad.mit.edu	37	chr22	31741114	31741114	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaggatctgtacgttggActgtttgatgacttcctggc	11	9	1	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	31741114	A	G	31741114	3	3	1	1	0	0	0	0	1	0	0	0	11555	275	10	2	1891	2	PATZ1	22	31741114	Missense_Mutation	SNP	A	TCGA-KL-8323-01A-21D-2310-10		31741114	19563452	58	58											
SFI1	9814	broad.mit.edu;ucsc.edu	37	chr22	32000342	32000342	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagctgatgcgagcagaCctgcaccaccagcacagcgt	11	14	0	3	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	32000342	C	T	32000342	2	4	1	1	0	0	0	0	0	0	0	1	14253	506	18	3		3	SFI1	22	32000342	Silent	SNP	C	TCGA-KL-8323-01A-21D-2310-10	259228	32000342	19304224	59	59											
CXorf59	286464	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	36117961	36117961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttgaagcctggagtaaaCgggcatggacagatgtattt	12	5	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	36117961	C	T	36117961	3	4	1	1	0	0	0	0	1	0	0	0	4146	527	19	1	839	1	CXorf59	23	36117961	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10		36117961	119152599	60	60											
USP9X	8239	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	41002593	41002593	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catagtgttgcgagatagtcTtcatcagccacagtatgtag	10	8	3	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		G	41002593	T	G	41002593	3	3	1	1	0	0	0	0	1	0	0	0	17196	1609	56	5	1245	5	USP9X	23	41002593	Missense_Mutation	SNP	T	TCGA-KL-8323-01A-21D-2310-10	4884632	41002593	114267967	61	61											
PHF8	23133	hgsc.bcm.edu	37	chrX	54049206	54049206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttactaatggagggcccatGcaagacttcacagttggggc	12	10	1	1	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	54049206	G	T	54049206	3	4	1	1	0	0	0	0	1	0	0	0	11920	1319	46	5	3155	5	PHF8	23	54049206	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	13046613	54049206	101221354	62	62											
ZC4H2	55906	broad.mit.edu;bcgsc.ca	37	chrX	64137684	64137684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcatcctgcttccgtttCggctttttggggttccggga	11	10	1	0	rs149235340	byfrequency	TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		T	64137684	C	T	64137684	3	4	1	1	0	0	0	0	1	0	0	0	17683	884	31	1	43	1	ZC4H2	23	64137684	Missense_Mutation	SNP	C	TCGA-KL-8323-01A-21D-2310-10	10088478	64137684	91132876	63	63											
ATP11C	286410	broad.mit.edu	37	chrX	138823233	138823233	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtgatttatccacgtccaGaatcgggtatccaaggcaag	10	9	0	2	novel		TCGA-KL-8323-01A-21D-2310-10	TCGA-KL-8323-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fae88d21-171c-4df4-b258-3c5948a1034b	f5c7fb67-5906-4db0-ad0d-129df8e065cb		C	138823233	G	C	138823233	3	2	1	1	0	0	0	0	1	0	0	0	1125	933	33	5	417	5	ATP11C	23	138823233	Missense_Mutation	SNP	G	TCGA-KL-8323-01A-21D-2310-10	74685549	138823233	16447327	64	64											
IL28RA	163702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	24484160	24484160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtggttcaatgtagggCtggaagctgacgccatcttc	14	8	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	24484160	C	A	24484160	3	1	2	1	0	0	0	0	1	0	0	0	7745	796	28	5	543	5	IL28RA	1	24484160	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		24484160	224766461	1	65											
TMEM61	199964	hgsc.bcm.edu;mdanderson.org	37	chr1	55457726	55457726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcggagacgacaccgagtGccacacgctcctgctcaggc	12	16	1	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	55457726	G	T	55457726	3	4	2	1	0	0	0	0	1	0	0	0	16292	1319	46	5	593	5	TMEM61	1	55457726	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	30973566	55457726	193792895	2	66											
AGL	178	broad.mit.edu	37	chr1	100353594	100353594	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaccgatgtgaatcagaAgaaaaggaagatggtggagg	14	4	1	4	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	100353594	A	G	100353594	2	3	2	1	0	0	0	0	0	0	0	1	384	69	3	2		2	AGL	1	100353594	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	44895868	100353594	148897027	3	67											
KIAA1324	57535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	109731772	109731772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccacaaacatggaaaCgaccgttctcagtgggatca	10	12	2	0	rs143784237		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	109731772	C	T	109731772	3	4	2	1	0	0	0	0	1	0	0	0	8284	536	19	1	1342	1	KIAA1324	1	109731772	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	9378178	109731772	139518849	4	68											
MOV10	4343	ucsc.edu	37	chr1	113241049	113241049	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcctccaagaagggcaaAgctcgcctgagccctcgaag	10	16	0	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	113241049	A	G	113241049	2	3	2	1	0	0	0	0	0	0	0	1	9796	69	3	2		2	MOV10	1	113241049	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	3509277	113241049	136009572	5	69											
SPAG17	200162	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	118535252	118535252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatctgagtaccaaacGgaggtcctggagtttttttc	9	9	1	1	rs147490539		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	118535252	G	A	118535252	3	1	2	1	0	0	0	0	1	0	0	0	15079	1116	39	1	1525	1	SPAG17	1	118535252	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	5294203	118535252	130715369	6	70											
CR2	1380	bcgsc.ca	37	chr1	207644142	207644142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagatagacacatggtccGctttgaccctggaacatcta	10	10	1	3	rs183067414		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	207644142	G	A	207644142	3	1	2	1	0	0	0	0	1	0	0	0	3871	1087	38	1	1309	1	CR2	1	207644142	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	89108890	207644142	41606479	7	71											
OR2T3	343173	broad.mit.edu	37	chr1	248637594	248637594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgatgcagtcaagaatgAaccaagaaaagtagtaaagg	11	5	1	4	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	248637594	A	G	248637594	3	3	2	1	0	0	0	0	1	0	0	0	11102	246	9	4	945	4	OR2T3	1	248637594	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	40993452	248637594	613027	8	72											
LPIN1	23175	broad.mit.edu	37	chr2	11922578	11922578	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgaggagctcaaacccccCtctgccagtgtagtccagac	9	15	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	11922578	C	T	11922578	2	4	2	1	0	0	0	0	0	0	0	1	8990	668	24	4		4	LPIN1	2	11922578	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		11922578	231276795	9	73											
CCDC88A	55704	broad.mit.edu	37	chr2	55544911	55544911	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attttctaaggaagactgctGgattaggagttgggcattct	12	5	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	55544911	G	T	55544911	3	4	2	1	0	0	0	0	1	0	0	0	2890	1357	47	5	2276	5	CCDC88A	2	55544911	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	43622333	55544911	187654462	10	74											
FSIP2	401024	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	186689203	186689203	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacccaagtgctaaaatattAgaaggttggactcctttttc	8	8	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	186689203	A	G	186689203	2	3	2	1	0	0	0	0	0	0	0	1	6127	417	15	2		2	FSIP2	2	186689203	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	131144292	186689203	56510170	11	75											
HECW2	57520	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	197106878	197106878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagttcctcagtttggcttCgaaatcccgcttgtaagggg	11	9	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	197106878	C	T	197106878	3	4	2	1	0	0	0	0	1	0	0	0	7101	893	31	1	1178	1	HECW2	2	197106878	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	10417675	197106878	46092495	12	76											
SLC6A6	6533	broad.mit.edu;bcgsc.ca	37	chr3	14513818	14513818	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttctcttgcttggactggAtagccaggtgcgtataaggg	14	8	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	14513818	A	G	14513818	3	3	2	1	0	0	0	0	1	0	0	0	14786	333	12	4	1236	4	SLC6A6	3	14513818	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10		14513818	183508612	13	77											
SCN10A	6336	broad.mit.edu;mdanderson.org	37	chr3	38739266	38739266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagagaatccaactccccGgattctcctaggacattctt	6	13	3	1	rs111535651	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	38739266	G	A	38739266	2	1	2	1	0	0	0	0	0	0	0	1	14009	1103	39	1		1	SCN10A	3	38739266	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	24225448	38739266	159283164	14	78											
LYZL4	131375	broad.mit.edu	37	chr3	42438812	42438812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcggagtactggcagtacCgggaccaggtgggcctgtgg	17	9	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	42438812	C	T	42438812	3	4	2	1	0	0	0	0	1	0	0	0	9206	652	23	1	58	1	LYZL4	3	42438812	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	3699546	42438812	155583618	15	79											
CELSR3	1951	hgsc.bcm.edu;mdanderson.org	37	chr3	48682486	48682486	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acccagcagcacagcagggaCgccccagcccagggcatggt	13	16	0	0	rs147124288	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	48682486	C	A	48682486	3	1	2	1	0	0	0	0	1	0	0	0	3252	536	19	5	2028	5	CELSR3	3	48682486	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6243674	48682486	149339944	16	80											
CCDC80	151887	broad.mit.edu	37	chr3	112357042	112357042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgctctttttctcagactTcttcatttgcttttcactct	3	12	6	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	112357042	T	C	112357042	3	2	2	1	0	0	0	0	1	0	0	0	2881	1792	62	4	1169	4	CCDC80	3	112357042	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	63674556	112357042	85665388	17	81											
GRAMD1C	54762	ucsc.edu	37	chr3	113594422	113594422	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctatagcaacatcttcagAtgggaaactacagtaagaca	7	8	3	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	113594422	A	G	113594422	2	3	2	1	0	0	0	0	0	0	0	1	6807	330	12	4		4	GRAMD1C	3	113594422	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	1237380	113594422	84428008	18	82											
ATR	545	bcgsc.ca	37	chr3	142180902	142180902	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcgaatatgaagttctcTtctacgagactctgcatctt	7	9	4	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	142180902	T	C	142180902	3	2	2	1	0	0	0	0	1	0	0	0	1208	1617	56	2	886	2	ATR	3	142180902	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	28586480	142180902	55841528	19	83											
B3GALNT1	8706	broad.mit.edu	37	chr3	160804293	160804293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgaagggtgggaggtcaCcagaatgaccagaaatggat	14	6	2	4	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	160804293	C	T	160804293	3	4	2	1	0	0	0	0	1	0	0	0	1249	507	18	3	749	3	B3GALNT1	3	160804293	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	18623391	160804293	37218137	20	84											
MUC20	200958	mdanderson.org	37	chr3	195453332	195453332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacaaccaacagcagccgaGggacgaacagcaccttagcc	9	15	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	195453332	G	A	195453332	3	1	2	1	0	0	0	0	1	0	0	0	10054	1000	35	4	1355	4	MUC20	3	195453332	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	34649039	195453332	2569098	21	85											
GABRA4	2557	broad.mit.edu;mdanderson.org	37	chr4	46976325	46976325	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	actaagctggaagactccttCggaacttcaactgatttctc	7	11	2	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	46976325	C	T	46976325	2	4	2	1	0	0	0	0	0	0	0	1	6215	871	31	1		1	GABRA4	4	46976325	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		46976325	144177951	22	86											
PPAT	5471	broad.mit.edu;mdanderson.org	37	chr4	57265347	57265347	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgttttaatattacttacctCttttgcaccagattctttga	4	8	2	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	57265347	C	G	57265347	3	3	2	1	0	0	0	0	1	0	0	0	12382	922	32	5	331	5	PPAT	4	57265347	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	10289022	57265347	133888929	23	87											
PRDM8	56978	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	81124587	81124587	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgcgatggagcccttGgtgaagcggcggcgagagga	19	7	0	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	81124587	G	C	81124587	3	2	2	1	0	0	0	0	1	0	0	0	12551	1339	47	5	1981	5	PRDM8	4	81124587	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	23859240	81124587	110029689	24	88											
BBS12	166379	broad.mit.edu	37	chr4	123663959	123663959	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgcaacaaggcaactgTacaaaaccatttatgtttga	8	7	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	123663959	T	C	123663959	2	2	2	1	0	0	0	0	0	0	0	1	1341	1644	57	2		2	BBS12	4	123663959	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	42539372	123663959	67490317	25	89											
SORBS2	8470	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	186560084	186560084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtgggggcgccactccGgggcggaggggaggggctac	23	9	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	186560084	G	A	186560084	3	1	2	1	0	0	0	0	1	0	0	0	15026	1115	39	1	2868	1	SORBS2	4	186560084	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	62896125	186560084	4594192	26	90											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	187527260	187527260	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtttcccctggagaagacGggcgcgttgtcattgacatc	12	10	1	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	187527260	G	T	187527260	2	4	2	1	0	0	0	0	0	0	0	1	5738	1103	39	5		5	FAT1	4	187527260	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	967176	187527260	3627016	27	91											
PCSK1	5122	broad.mit.edu	37	chr5	95746664	95746664	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgtttcccgaagcccagacGaagatggaccccttcccctg	9	17	0	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	95746664	G	A	95746664	2	1	2	1	0	0	0	0	0	0	0	1	11679	1049	37	1		1	PCSK1	5	95746664	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10		95746664	85168596	28	92											
FBXL17	64839	broad.mit.edu	37	chr5	107700539	107700539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caataatagaggtgtcagaaAgctgtttacacctgtaggct	10	7	1	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	107700539	A	G	107700539	3	3	2	1	0	0	0	0	1	0	0	0	5762	72	3	2	859	2	FBXL17	5	107700539	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	11953875	107700539	73214721	29	93											
PCDHB9	56127	broad.mit.edu;mdanderson.org	37	chr5	140569001	140569001	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttcgctcttcctcctcTcggtgctcctgttcgtggcg	10	15	3	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	140569001	T	C	140569001	3	2	2	1	0	0	0	0	1	0	0	0	11628	1538	54	2	2111	2	PCDHB9	5	140569001	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	32868462	140569001	40346259	30	94											
FRK	2444	broad.mit.edu	37	chr6	116325094	116325094	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgattagaaaggaacCggtcttgttttctgaatata	8	6	3	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	116325094	C	T	116325094	3	4	2	1	0	0	0	0	1	0	0	0	6100	652	23	1	1133	1	FRK	6	116325094	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		116325094	54789973	31	95											
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	152652931	152652931	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tatcattttctgcttttgatCtttcagatcttcaatagcat	4	8	6	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	152652931	C	G	152652931	3	3	2	1	0	0	0	0	1	0	0	0	15546	913	32	5	13853	5	SYNE1	6	152652931	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	36327837	152652931	18462136	32	96											
WIPF3	644150	mdanderson.org	37	chr7	29923572	29923572	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctctcccaggctaggcaaTacctccgaggcgcatggcgc	12	16	1	0	rs28439342	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	29923572	T	C	29923572	2	2	2	1	0	0	0	0	0	0	0	1	17475	1403	49	4		4	WIPF3	7	29923572	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10		29923572	129215091	33	97											
PCLO	27445	broad.mit.edu	37	chr7	82585926	82585926	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactctgagttttctcttggTctttaggctgttcaggagaa	10	7	4	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	82585926	T	C	82585926	3	2	2	1	0	0	0	0	1	0	0	0	11662	1667	58	2	11186	2	PCLO	7	82585926	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	52662354	82585926	76552737	34	98											
MET	4233	broad.mit.edu	37	chr7	116411695	116411695	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgtggctgaaaaagagAaagcaaattaaaggtgcatt	10	5	0	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	116411695	A	G	116411695	2	3	2	1	0	0	0	0	0	0	0	1	9562	243	9	4		4	MET	7	116411695	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	33825769	116411695	42726968	35	99											
SORBS3	10174	bcgsc.ca	37	chr8	22426778	22426778	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctggaggtggagctgtccTtccgcaaggtgggccaggcc	16	12	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	22426778	T	C	22426778	3	2	2	1	0	0	0	0	1	0	0	0	15027	1609	56	2	1485	2	SORBS3	8	22426778	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		22426778	123937244	36	100											
KCNS2	3788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	99440360	99440360	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttgctgctctgccactcGcgcgaggccattctggagct	12	15	2	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	99440360	G	A	99440360	2	1	2	1	0	0	0	0	0	0	0	1	8150	1074	38	1		1	KCNS2	8	99440360	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	77013582	99440360	46923662	37	101											
OXR1	55074	broad.mit.edu	37	chr8	107715150	107715150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagggcacagtcagtggtgTgctgctagttacaccaaata	11	8	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	107715150	T	C	107715150	3	2	2	1	0	0	0	0	1	0	0	0	11413	1696	59	2	921	2	OXR1	8	107715150	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	8274790	107715150	38648872	38	102											
ST3GAL1	6482	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	134474162	134474162	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaccgagaggatgccggTagatgggtatcgcccgtgcc	16	10	0	3	rs146292003		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	134474162	T	G	134474162	3	3	2	1	0	0	0	0	1	0	0	0	15314	1638	57	5	225	5	ST3GAL1	8	134474162	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	26759012	134474162	11889860	39	103											
CYP11B1	1584	mdanderson.org	37	chr8	143957129	143957129	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcagccagcacccaccGcaaggtctccttgagggccg	12	17	2	1	rs61752786	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	143957129	G	T	143957129	2	4	2	1	0	0	0	0	0	0	0	1	4176	1101	38	5		5	CYP11B1	8	143957129	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	9482967	143957129	2406893	40	104			1	1		2	2	23	N	G_A	7.39069e-05
CYP11B1	1584	mdanderson.org	37	chr8	143957151	143957151	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtctccttgagggccgcAcgcagcaagggcagctcggt	15	12	1	1	rs6437	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	143957151	A	C	143957151	2	2	2	1	0	0	0	0	0	0	0	1	4176	146	6	5		5	CYP11B1	8	143957151	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	22	143957151	2406871	41	105			1	1		2	2	23	N	G_A	7.39069e-05
ANKRD20A3	441425	mdanderson.org	37	chr9	67938655	67938655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatacttaaaaaggagaaaTcaggtaagacttctgattgt	9	4	2	4	rs199656293	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	67938655	T	C	67938655	3	2	2	1	0	0	0	0	1	0	0	0	649	1435	50	4	5876	4	ANKRD20A3	9	67938655	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		67938655	73274776	42	106											
SETX	23064	broad.mit.edu;mdanderson.org	37	chr9	135203956	135203956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaataataataacctgtccaCgggaggtatctccaacatta	6	9	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	135203956	C	T	135203956	3	4	2	1	0	0	0	0	1	0	0	0	14238	536	19	1	5072	1	SETX	9	135203956	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	67265301	135203956	6009475	43	107											
KIF5B	3799	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr10	32321694	32321694	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agttgactttgctggttaatTtcttcatcctagaattgtga	8	6	2	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	32321694	T	A	32321694	3	1	2	1	0	0	0	0	1	0	0	0	8367	1838	64	5	1629	5	KIF5B	10	32321694	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		32321694	103213053	44	108											
RRP12	23223	broad.mit.edu	37	chr10	99130534	99130534	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcttcctcacgatgtgtAggaggcacttcaaacggggc	13	10	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	99130534	A	G	99130534	3	3	2	1	0	0	0	0	1	0	0	0	13781	420	15	2	1423	2	RRP12	10	99130534	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	66808840	99130534	36404213	45	109											
MKI67	4288	broad.mit.edu	37	chr10	129899864	129899864	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggtcttcatgggcttcttTtcatttctgtttatttctat	7	7	6	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	129899864	T	C	129899864	2	2	2	1	0	0	0	0	0	0	0	1	9675	1838	64	4		4	MKI67	10	129899864	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	30769330	129899864	5634883	46	110											
MUC5B	727897	mdanderson.org	37	chr11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacctgcagccaccagcaGcacagtgactccctcctctg	7	19	1	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	1268402	G	A	1268402	3	1	2	1	0	0	0	0	1	0	0	0	10057	971	34	4	10423	4	MUC5B	11	1268402	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10		1268402	133738114	47	111											
OR52D1	390066	broad.mit.edu;mdanderson.org	37	chr11	5510050	5510050	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atccctttctgtgccatgtaTcttgtagcactggttggaaa	9	9	2	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	5510050	T	C	5510050	2	2	2	1	0	0	0	0	0	0	0	1	11193	1442	50	4		4	OR52D1	11	5510050	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	4241648	5510050	129496466	48	112											
OR56A3	390083	broad.mit.edu	37	chr11	5969446	5969446	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatgtcattcctgcagcCcttaaccccatcatttacgg	5	16	2	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	5969446	C	A	5969446	2	1	2	1	0	0	0	0	0	0	0	1	11213	610	22	5		5	OR56A3	11	5969446	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	459396	5969446	129037070	49	113											
DNHD1	144132	broad.mit.edu	37	chr11	6566233	6566234	+	Frame_Shift_Ins	INS	-	-	C													ctctatggggtgtgtgctcaINScttcccccgcctcttcttcc					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	6566234	-	C	6566233	7	5	2	1	0	1	1	0	0	0	0	0	4705	159	6	0	4147	0	DNHD1	11	6566233	Frame_Shift_Ins	INS	-	TCGA-KL-8324-01A-11D-2310-10	596787	6566233	128440283	50	114											
KCNJ11	3767	broad.mit.edu	37	chr11	17408682	17408682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taacgtccgtcctcctcagcTacaatgggcacaaagcgctg	9	14	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	17408682	T	C	17408682	2	2	2	1	0	0	0	0	0	0	0	1	8106	1509	53	2		2	KCNJ11	11	17408682	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	10842449	17408682	117597834	51	115											
TMEM86A	144110	broad.mit.edu	37	chr11	18723333	18723334	+	Frame_Shift_Ins	INS	-	-	G													gctatggcagggctgcggctINSggccggggcagactggcgct					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	18723334	-	G	18723333	7	5	2	1	0	1	1	0	0	0	0	0	16312	1580	55	0	510	0	TMEM86A	11	18723333	Frame_Shift_Ins	INS	-	TCGA-KL-8324-01A-11D-2310-10	1314651	18723333	116283183	52	116											
MPPED2	744	broad.mit.edu	37	chr11	30601906	30601906	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaactttgccttgagaaggAatcccatgtgccatccttcc	8	12	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	30601906	A	G	30601906	2	3	2	1	0	0	0	0	0	0	0	1	9820	242	9	4		4	MPPED2	11	30601906	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	11878573	30601906	104404610	53	117											
OR4A5	81318	mdanderson.org	37	chr11	51412043	51412043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatggccacatagcgatcaCaggccatcaccaccagaagg	10	13	2	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	51412043	C	T	51412043	3	4	2	1	0	0	0	0	1	0	0	0	11122	478	17	4	598	4	OR4A5	11	51412043	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	20810137	51412043	83594473	54	118											
OR5M8	219484	mdanderson.org	37	chr11	56258310	56258310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttaatcagtggtgggtcCgcacagtagaagtgattaat	12	6	1	2	rs150358569	bycluster;byfrequency;by1000genomes	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	56258310	C	T	56258310	2	4	2	1	0	0	0	0	0	0	0	1	11255	639	23	1		1	OR5M8	11	56258310	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	4846267	56258310	78748206	55	119											
EHBP1L1	254102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	65350193	65350193	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgacccaggagatatctgggGatttagggccactgaagata	13	7	1	4	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	65350193	G	T	65350193	3	4	2	1	0	0	0	0	1	0	0	0	5013	1174	41	5	2084	5	EHBP1L1	11	65350193	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	9091883	65350193	69656323	56	120											
CLPB	81570	hgsc.bcm.edu;bcgsc.ca	37	chr11	72028203	72028203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caatgatgtgctcctttagtCgctgctccagggggaagcgg	14	10	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	72028203	C	T	72028203	3	4	2	1	0	0	0	0	1	0	0	0	3580	884	31	1	1138	1	CLPB	11	72028203	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6678010	72028203	62978313	57	121											
ATM	472	broad.mit.edu	37	chr11	108216609	108216609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaagcgattggcttataCgcgcagtgtagctacttctt	11	8	1	1	rs141534716		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	108216609	C	T	108216609	3	4	2	1	0	0	0	0	1	0	0	0	1113	536	19	1	8784	1	ATM	11	108216609	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	36188406	108216609	26789907	58	122											
OR8D4	338662	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	123777314	123777314	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcaacttcatacccccaTgtactatttcctgagtagtt	5	12	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	123777314	T	A	123777314	3	1	2	1	0	0	0	0	1	0	0	0	11312	1464	51	5	178	5	OR8D4	11	123777314	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	15560705	123777314	11229202	59	123											
VWA5A	4013	broad.mit.edu	37	chr11	124005629	124005629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgttacaattgcaggtGtttctcatttggtattggag	11	6	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	124005629	G	A	124005629	3	1	2	1	0	0	0	0	1	0	0	0	17348	1377	48	4	1289	4	VWA5A	11	124005629	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	228315	124005629	11000887	60	124											
OR8B4	283162	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr11	124294671	124294671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagtgaacacatagatccCtaagaatagaaggaaaagag	9	7	0	5	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	124294671	C	T	124294671	3	4	2	1	0	0	0	0	1	0	0	0	11308	681	24	4	834	4	OR8B4	11	124294671	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	289042	124294671	10711845	61	125											
FOXJ2	55810	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr12	8196571	8196571	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cccaagactcaccagaacagGaggcaagcaagagcccacgg	11	14	1	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	8196571	G	C	8196571	3	2	2	1	0	0	0	0	1	0	0	0	6063	1175	41	5	516	5	FOXJ2	12	8196571	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10		8196571	125655324	62	126											
TAS2R43	259289	mdanderson.org	37	chr12	11244435	11244435	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagcaaaggccccaacaacaTcaccagaatgacactcttaa	5	13	2	2	rs111525185	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	11244435	T	C	11244435	3	2	2	1	0	0	0	0	1	0	0	0	15682	1435	50	4	539	4	TAS2R43	12	11244435	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	3047864	11244435	122607460	63	127											
ATF7IP	55729	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	14589046	14589046	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttttccttctcagatgaatTttctagacgaaaacgttcta	6	8	3	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	14589046	T	G	14589046	3	3	2	1	0	0	0	0	1	0	0	0	1091	1841	64	5	1662	5	ATF7IP	12	14589046	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	3344611	14589046	119262849	64	128											
DDX11	1663	mdanderson.org	37	chr12	31247692	31247692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtgtttgttctcagggaCggagctgaagaccatcaacg	12	9	2	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	31247692	C	T	31247692	3	4	2	1	0	0	0	0	1	0	0	0	4375	536	19	1	1468	1	DDX11	12	31247692	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	16658646	31247692	102604203	65	129											
OR10A7	121364	broad.mit.edu	37	chr12	55615316	55615316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatggcccttcctttctgtGgaccaaatgccgtggaccac	10	13	1	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	55615316	G	A	55615316	3	1	2	1	0	0	0	0	1	0	0	0	10974	1349	47	4	510	4	OR10A7	12	55615316	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	24367624	55615316	78236579	66	130											
IKBIP	121457	mdanderson.org	37	chr12	99019897	99019897	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatctccattatttcagaCactgctttcagcatatcatc	4	12	4	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	99019897	C	A	99019897	2	1	2	1	0	0	0	0	0	0	0	1	7670	465	17	5		5	IKBIP	12	99019897	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	43404581	99019897	34831998	67	131											
CCDC64	92558	broad.mit.edu	37	chr12	120510407	120510407	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgactcagccgtctccacGgactcctccatggacgagtc	10	16	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	120510407	G	A	120510407	2	1	2	1	0	0	0	0	0	0	0	1	2862	1103	39	1		1	CCDC64	12	120510407	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10	21490510	120510407	13341488	68	132											
POLR1D	51082	broad.mit.edu;mdanderson.org	37	chr13	28197257	28197257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagactcgaggtacccttcCagctgttgagccatttcaga	9	12	2	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	28197257	C	T	28197257	3	4	2	1	0	0	0	0	1	0	0	0	12292	594	21	4	278	4	POLR1D	13	28197257	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		28197257	86972621	69	133											
NEK5	341676	broad.mit.edu	37	chr13	52686431	52686431	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactaaataacacaccccgTtgtctattgatccttttcat	3	12	3	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	52686431	T	C	52686431	2	2	2	1	0	0	0	0	0	0	0	1	10406	1722	60	2		2	NEK5	13	52686431	Silent	SNP	T	TCGA-KL-8324-01A-11D-2310-10	24489174	52686431	62483447	70	134											
GNPNAT1	64841	broad.mit.edu	37	chr14	53250171	53250172	+	Frame_Shift_Del	DEL	TC	TC	-													ttcagggctgacaactccagTctctgttagctgacccaata					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		-	53250172	TC	-	53250171	7	5	2	1	0	1	0	1	0	0	0	0	6600	1667	58	0	383	0	GNPNAT1	14	53250171	Frame_Shift_Del	DEL	TC	TCGA-KL-8324-01A-11D-2310-10		53250171	54099369	71	135											
AHSA1	10598	broad.mit.edu	37	chr14	77926107	77926111	+	Frame_Shift_Del	DEL	CTTAT	CTTAT	-													ttaacaatcgcaaagggaaaCttatcttcttttatgaatgg					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	CTTAT	CTTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		-	77926111	CTTAT	-	77926107	7	5	2	1	0	1	0	1	0	0	0	0	418	565	20	0	235	0	AHSA1	14	77926107	Frame_Shift_Del	DEL	CTTAT	TCGA-KL-8324-01A-11D-2310-10	24675936	77926107	29423433	72	136	2	2									
AHSA1	10598	bcgsc.ca	37	chr14	77926108	77926112	+	Frame_Shift_Del	DEL	CTTAT	CTTAT	-													taacaatcgcaaagggaaacTtatcttcttttatgaatgga					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	CTTAT	CTTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		-	77926112	CTTAT	-	77926108	7	5	2	1	0	1	0	1	0	0	0	0	418	1609	56	0	236	0	AHSA1	14	77926108	Frame_Shift_Del	DEL	CTTAT	TCGA-KL-8324-01A-11D-2310-10	1	77926108	29423432	73	137	2	2									
OTUD7A	161725	broad.mit.edu	37	chr15	31779681	31779681	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgggcgttatcgttgtcGtctttcccccactcccagtc	9	16	1	0	rs200079505		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	31779681	G	A	31779681	2	1	2	1	0	0	0	0	0	0	0	1	11397	1136	40	1		1	OTUD7A	15	31779681	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10		31779681	70751711	74	138											
FAM98B	283742	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	38773557	38773557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctttgtcacccaagacaaCgattacaatggcacatctac	6	12	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	38773557	C	T	38773557	3	4	2	1	0	0	0	0	1	0	0	0	5706	536	19	1	820	1	FAM98B	15	38773557	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6993876	38773557	63757835	75	139											
CASC5	57082	broad.mit.edu	37	chr15	40943724	40943724	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttgctcaaatagactttAtgcaaaaacaaagaaataga	5	8	1	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	40943724	A	G	40943724	3	3	2	1	0	0	0	0	1	0	0	0	2688	449	16	4	6424	4	CASC5	15	40943724	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	2170167	40943724	61587668	76	140											
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	86808005	86808005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgatggcatttcctgatGtctggggacactgtccccct	11	11	1	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	86808005	G	A	86808005	3	1	2	1	0	0	0	0	1	0	0	0	375	1377	48	4	1499	4	AGBL1	15	86808005	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	45864281	86808005	15723387	77	141											
DCTPP1	79077	broad.mit.edu	37	chr16	30435593	30435593	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagtcacagggaatgtcCgcaggccccacagcctggtc	14	13	1	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	30435593	C	T	30435593	2	4	2	1	0	0	0	0	0	0	0	1	4344	639	23	1		1	DCTPP1	16	30435593	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		30435593	59919160	78	142											
ITGAM	3684	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	31283282	31283282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taacgcagctgcttgggcggAcacacacggccacgggcatc	13	14	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	31283282	A	G	31283282	3	3	2	1	0	0	0	0	1	0	0	0	7948	275	10	2	699	2	ITGAM	16	31283282	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	847689	31283282	59071471	79	143											
ANKRD11	29123	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	89349348	89349348	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccttgtgcttttcaaagActttctcttttttgtctctc	4	11	4	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	89349348	A	T	89349348	3	4	2	1	0	0	0	0	1	0	0	0	639	275	10	5	4409	5	ANKRD11	16	89349348	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	58066066	89349348	1005405	80	144											
ZZEF1	23140	ucsc.edu;bcgsc.ca	37	chr17	3981271	3981271	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaggctgccttggacggaCcagaacagggagaagagcac	15	10	0	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	3981271	C	T	3981271	4	4	2	1	0	0	0	0	0	1	0	0	18356	508	18	3	6138	3	ZZEF1	17	3981271	Nonsense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10		3981271	77213939	81	145											
POLR2A	5430	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7400726	7400726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagatcaacaatcagctgCggcgcaatgagcagaacggc	12	10	2	4	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	7400726	C	T	7400726	3	4	2	1	0	0	0	0	1	0	0	0	12294	759	27	1	893	1	POLR2A	17	7400726	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	3419455	7400726	73794484	82	146											
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1	rs121912666	alternate_allele	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	7578190	T	C	7578190	3	2	2	1	0	0	0	0	1	0	0	0	16486	1406	49	4	635	4	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	177464	7578190	73617020	83	147											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7578280	7578280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcggataagatgctgaggaGgggccagacctaagagcaat	14	8	0	4	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	7578280	G	A	7578280	3	1	2	1	0	0	0	0	1	0	0	0	16486	1000	35	4	725	4	TP53	17	7578280	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	90	7578280	73616930	84	148											
KRTAP1-1	81851	mdanderson.org	37	chr17	39197485	39197485	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgagaagctaggaaatccAcagaagctggtctggcagca	13	8	1	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	39197485	A	G	39197485	2	3	2	1	0	0	0	0	0	0	0	1	8563	157	6	2		2	KRTAP1-1	17	39197485	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	31619205	39197485	41997725	85	149											
CDC27	996	hgsc.bcm.edu	37	chr17	45232055	45232055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taccttttttgaaggggctcCggtggatggcacatcaatta	11	8	1	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	45232055	C	T	45232055	3	4	2	1	0	0	0	0	1	0	0	0	3095	661	23	1	1600	1	CDC27	17	45232055	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	6034570	45232055	35963155	86	150											
PTRH2	51651	broad.mit.edu;mdanderson.org	37	chr17	57775085	57775085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagcagcatgagagcaCtgggcagccactttcccttt	10	12	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	57775085	C	T	57775085	2	4	2	1	0	0	0	0	0	0	0	1	12909	564	20	4		4	PTRH2	17	57775085	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	12543030	57775085	23420125	87	151											
DNAI2	64446	broad.mit.edu	37	chr17	72306262	72306262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggaggtctcgcctgggcTctctaccctccagaggaatg	13	13	2	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	72306262	T	C	72306262	3	2	2	1	0	0	0	0	1	0	0	0	4647	1551	54	2	1492	2	DNAI2	17	72306262	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	14531177	72306262	8888948	88	152											
PIAS2	9063	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	44409771	44409771	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcattggacaccaagaaccaTcttcttggaatttgatctca	6	10	4	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	44409771	T	A	44409771	3	1	2	1	0	0	0	0	1	0	0	0	11956	1435	50	5	698	5	PIAS2	18	44409771	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		44409771	33667477	89	153											
MUC16	94025	mdanderson.org	37	chr19	8999462	8999462	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atgctgtgggtcagctggctCagctcccagtatagctgctc	12	12	2	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	8999462	C	T	8999462	2	4	2	1	0	0	0	0	0	0	0	1	10051	813	29	4		4	MUC16	19	8999462	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10		8999462	50129521	90	154											
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	36340211	36340211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccaagctctgtcctgccCgcacgtgcccctcatccagg	9	19	2	0	rs149649169		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	36340211	C	T	36340211	3	4	2	1	0	0	0	0	1	0	0	0	10661	652	23	1	3050	1	NPHS1	19	36340211	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	27340749	36340211	22788772	91	155											
NUCB1	4924	bcgsc.ca	37	chr19	49416771	49416771	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtgtgggaggagctggAtggactggaccccaacaggt	19	7	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	49416771	A	G	49416771	3	3	2	1	0	0	0	0	1	0	0	0	10797	333	12	4	729	4	NUCB1	19	49416771	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	13076560	49416771	9712212	92	156											
RCN3	57333	broad.mit.edu	37	chr19	50031830	50031830	+	Frame_Shift_Del	DEL	T	T	-													ccctcatggccaggggagggTgcaccaggcggcccccctga					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		-	50031830	T	-	50031830	7	5	2	1	0	1	0	1	0	0	0	0	13273	1696	59	0	103	0	RCN3	19	50031830	Frame_Shift_Del	DEL	T	TCGA-KL-8324-01A-11D-2310-10	615059	50031830	9097153	93	157											
PRKCG	5582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	54394940	54394940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttagttggcgaggcccGtaacctaattcctatggacc	10	12	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	54394940	G	A	54394940	3	1	2	1	0	0	0	0	1	0	0	0	12601	1145	40	1	564	1	PRKCG	19	54394940	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	4363110	54394940	4734043	94	158											
LILRA4	23547	broad.mit.edu	37	chr19	54848817	54848817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagcccagcctggggctgcCggccagggcgctgggggagg	21	12	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	54848817	C	T	54848817	3	4	2	1	0	0	0	0	1	0	0	0	8850	652	23	1	709	1	LILRA4	19	54848817	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	453877	54848817	4280166	95	159											
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56466067	56466067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagggagctcctgggatcGgaaaaacaatcctggccaaa	11	10	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	56466067	G	A	56466067	3	1	2	1	0	0	0	0	1	0	0	0	10562	1117	39	1	653	1	NLRP8	19	56466067	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	1617250	56466067	2662916	96	160											
RASSF2	9770	bcgsc.ca	37	chr20	4773205	4773205	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggagcttggcatctggTcaccctccggcggggcatcc	14	14	2	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	4773205	T	C	4773205	3	2	2	1	0	0	0	0	1	0	0	0	13178	1667	58	2	652	2	RASSF2	20	4773205	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10		4773205	58252315	97	161											
KIAA1755	85449	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	36859706	36859706	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacaccagaagcaggggcCgcccggccctgtcccggcca	13	17	0	2	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	36859706	C	T	36859706	3	4	2	1	0	0	0	0	1	0	0	0	8318	652	23	1	1873	1	KIAA1755	20	36859706	Missense_Mutation	SNP	C	TCGA-KL-8324-01A-11D-2310-10	32086501	36859706	26165814	98	162											
NTSR1	4923	ucsc.edu	37	chr20	61340870	61340870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagagcacggtgcattaccAcctgggcagcctggcgctgt	14	13	0	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	61340870	A	G	61340870	3	3	2	1	0	0	0	0	1	0	0	0	10789	159	6	2	313	2	NTSR1	20	61340870	Missense_Mutation	SNP	A	TCGA-KL-8324-01A-11D-2310-10	24481164	61340870	1684650	99	163											
GGT1	2678	mdanderson.org	37	chr22	25023406	25023406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtctcggcaggtggtccGcaacatgacctccgagttct	14	12	2	1	rs201401901	byfrequency	TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	25023406	G	A	25023406	3	1	2	1	0	0	0	0	1	0	0	0	6417	1087	38	1	1058	1	GGT1	22	25023406	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10		25023406	26281160	100	164											
TMEM184B	25829	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	38621520	38621520	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctcccgggtggcgaagTagaagaggaagagggcgtag	19	7	0	3	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		C	38621520	T	C	38621520	3	2	2	1	0	0	0	0	1	0	0	0	16209	1638	57	2	537	2	TMEM184B	22	38621520	Missense_Mutation	SNP	T	TCGA-KL-8324-01A-11D-2310-10	13598114	38621520	12683046	101	165											
VCX3A	51481	mdanderson.org	37	chrX	6451843	6451843	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtggttcctccacctgGctctcctgactcagtggttc	9	15	3	1	rs199720302		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	6451843	G	A	6451843	2	1	2	1	0	0	0	0	0	0	0	1	17250	1194	42	3		3	VCX3A	23	6451843	Silent	SNP	G	TCGA-KL-8324-01A-11D-2310-10		6451843	148818717	102	166											
ARHGAP36	158763	broad.mit.edu;mdanderson.org	37	chrX	130219620	130219620	+	Silent	SNP	C	C	A													ctggtctacctgatgccaccCtgccacagtgataccctgga					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		A	130219620	C	A	130219620	2	1	2	1	0	0	0	0	0	0	0	1	885	668	24	5		5	ARHGAP36	23	130219620	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	123767777	130219620	25050940	103	167	3	2									
ARHGAP36	158763	broad.mit.edu	37	chrX	130219622	130219622	+	Missense_Mutation	SNP	G	G	T													ggtctacctgatgccaccctGccacagtgataccctggagc					novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	130219622	G	T	130219622	3	4	2	1	0	0	0	0	1	0	0	0	885	1319	46	5	1042	5	ARHGAP36	23	130219622	Missense_Mutation	SNP	G	TCGA-KL-8324-01A-11D-2310-10	2	130219622	25050938	104	168	3	2									
MCF2	4168	broad.mit.edu;mdanderson.org	37	chrX	138698453	138698453	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctctaccttaagctcaggAgataatattacatcaaattc	5	10	3	1	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		G	138698453	A	G	138698453	2	3	2	1	0	0	0	0	0	0	0	1	9455	291	11	2		2	MCF2	23	138698453	Silent	SNP	A	TCGA-KL-8324-01A-11D-2310-10	8478831	138698453	16572107	105	169											
SLC6A8	6535	broad.mit.edu	37	chrX	152956889	152956889	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggccacatgtggccacacCtggaacactcccgactgcgt	11	15	0	0	novel		TCGA-KL-8324-01A-11D-2310-10	TCGA-KL-8324-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47e52141-87f5-4718-8497-950711774cd8	5831a933-9b5f-4f33-94d8-ba2a844f27ef		T	152956889	C	T	152956889	2	4	2	1	0	0	0	0	0	0	0	1	14788	668	24	4		4	SLC6A8	23	152956889	Silent	SNP	C	TCGA-KL-8324-01A-11D-2310-10	14258436	152956889	2313671	106	170											
PRAMEF11	440560	mdanderson.org	37	chr1	12885127	12885127	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagggcaggcaggatggcGttgacttgggagtctatgat	16	7	2	2	rs78200253		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	12885127	G	A	12885127	2	1	3	1	0	0	0	0	0	0	0	1	12512	1136	40	1		1	PRAMEF11	1	12885127	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10		12885127	236365494	1	171											
CROCC	9696	mdanderson.org	37	chr1	17277573	17277573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcctctctgcgggagcagCgggcagctcacgaggaggac	17	12	2	0	rs3969856		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	17277573	C	T	17277573	3	4	3	1	0	0	0	0	1	0	0	0	3922	759	27	1	3040	1	CROCC	1	17277573	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	4392446	17277573	231973048	2	172											
CD52	1043	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	26644516	26644516	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcctaccaaaatgaagcGcttcctcttcctcctactca	4	15	2	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	26644516	G	A	26644516	3	1	3	1	0	0	0	0	1	0	0	0	3051	1087	38	1	10	1	CD52	1	26644516	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	9366943	26644516	222606105	3	173											
SPTA1	6708	bcgsc.ca	37	chr1	158646033	158646033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcctggatctgaggtgcaTctgaaggatgggaaagtgtc	14	7	3	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	158646033	T	C	158646033	3	2	3	1	0	0	0	0	1	0	0	0	15216	1435	50	4	6429	4	SPTA1	1	158646033	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	132001517	158646033	90604588	4	174											
C1orf129	80133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	170993854	170993854	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacatcacgtttgctcaAagatgaaaattacagttttg	7	7	3	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	170993854	A	T	170993854	3	4	3	1	0	0	0	0	1	0	0	0	2015	14	1	5	2322	5	C1orf129	1	170993854	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	12347821	170993854	78256767	5	175											
SOX13	9580	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204092909	204092909	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttcccagacatgcacaActccagcatcagcaagatcc	6	16	1	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	204092909	A	G	204092909	3	3	3	1	0	0	0	0	1	0	0	0	15042	43	2	2	1394	2	SOX13	1	204092909	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	33099055	204092909	45157712	6	176											
BIRC6	57448	hgsc.bcm.edu	37	chr2	32718631	32718631	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctacagctacacaagctAtgcaagaatttcttactcga	6	11	1	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	32718631	A	G	32718631	3	3	3	1	0	0	0	0	1	0	0	0	1443	449	16	4	8543	4	BIRC6	2	32718631	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10		32718631	210480742	7	177											
NRP2	8828	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	206605324	206605324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacaaggtttgttagaatcCgccctcagacctggcactca	9	12	2	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	206605324	C	T	206605324	3	4	3	1	0	0	0	0	1	0	0	0	10740	652	23	1	1258	1	NRP2	2	206605324	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	173886693	206605324	36594049	8	178											
ITGA9	3680	broad.mit.edu	37	chr3	37523097	37523097	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgctgatcccttgctatgaAggtgagcatggattgatttt	11	7	0	4	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	37523097	A	G	37523097	2	3	3	1	0	0	0	0	0	0	0	1	7944	86	3	2		2	ITGA9	3	37523097	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10		37523097	160499333	9	179											
ROBO2	6092	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	77526693	77526693	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	actggaaaaaagacaaagttCgaattgatgacaaggaagaa	10	4	0	4	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	77526693	C	T	77526693	4	4	3	1	0	0	0	0	0	1	0	0	13609	876	31	1	529	1	ROBO2	3	77526693	Nonsense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	40003596	77526693	120495737	10	180											
MCM2	4171	broad.mit.edu	37	chr3	127317314	127317314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatcgtggtactgctatggCggtgagcgcgctggcgcgtg	19	9	0	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	127317314	C	T	127317314	3	4	3	1	0	0	0	0	1	0	0	0	9463	782	27	1	7	1	MCM2	3	127317314	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	49790621	127317314	70705116	11	181											
MECOM	2122	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	168834235	168834235	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaggtaagaccagcaggAtgcctattggcgccaaaata	12	8	0	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	168834235	A	C	168834235	3	2	3	1	0	0	0	0	1	0	0	0	9499	330	12	5	2334	5	MECOM	3	168834235	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	41516921	168834235	29188195	12	182											
MCF2L2	23101	broad.mit.edu	37	chr3	183028733	183028733	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgctcaaaatgctgtagTtgtaggcactggttaagctt	11	7	1	0	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	183028733	T	C	183028733	2	2	3	1	0	0	0	0	0	0	0	1	9457	1722	60	2		2	MCF2L2	3	183028733	Silent	SNP	T	TCGA-KL-8325-01A-11D-2310-10	14194498	183028733	14993697	13	183											
ETV5	2119	broad.mit.edu	37	chr3	185783822	185783822	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaactcctggctgaggAgggaaggggtggcagggttc	19	8	0	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	185783822	A	G	185783822	2	3	3	1	0	0	0	0	0	0	0	1	5321	291	11	2		2	ETV5	3	185783822	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10	2755089	185783822	12238608	14	184											
MUC4	4585	mdanderson.org	37	chr3	195506914	195506914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgtggatactgaggaaGggatggtgacaggaagaggg	18	5	0	3	rs186560307	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	195506914	G	A	195506914	3	1	3	1	0	0	0	0	1	0	0	0	10056	1000	35	4		4	MUC4	3	195506914	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	9723092	195506914	2515516	15	185											
MUC4	4585	mdanderson.org	37	chr3	195507683	195507683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaagCgtcggtgacaagaagagggg	17	6	0	4	rs71187742		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	195507683	C	T	195507683	3	4	3	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195507683	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	769	195507683	2514747	16	186											
MUC4	4585	mdanderson.org	37	chr3	195515134	195515134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgtcggtgacaGgaagagaggtggcgtgacct	18	6	0	4	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	195515134	G	T	195515134	3	4	3	1	0	0	0	0	1	0	0	0	10056	1000	35	5		5	MUC4	3	195515134	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	7451	195515134	2507296	17	187											
ANKRD17	26057	hgsc.bcm.edu	37	chr4	73956951	73956951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aggaacagtcattctaacttCcgggggaggaacctgagact	12	9	2	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	73956951	C	T	73956951	3	4	3	1	0	0	0	0	1	0	0	0	646	864	30	3	1441	3	ANKRD17	4	73956951	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		73956951	117197325	18	188											
IRX2	153572	ucsc.edu	37	chr5	2748604	2748604	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagagttgtaccgcaggagAccctggccctgcagcgccgc	14	15	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	2748604	A	G	2748604	2	3	3	1	0	0	0	0	0	0	0	1	7905	262	10	2		2	IRX2	5	2748604	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10		2748604	178166656	19	189											
NIPBL	25836	bcgsc.ca	37	chr5	37016193	37016193	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accactgtttgaaaattttgTtcaagaccttctttcaacag	5	9	3	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	37016193	T	C	37016193	3	2	3	1	0	0	0	0	1	0	0	0	10507	1725	60	2	4783	2	NIPBL	5	37016193	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	34267589	37016193	143899067	20	190											
SKIV2L2	23517	broad.mit.edu	37	chr5	54654428	54654428	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgaatacattcagatgTctggtcgtgctggaaggaga	14	6	2	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	54654428	T	C	54654428	3	2	3	1	0	0	0	0	1	0	0	0	14458	1667	58	2	1619	2	SKIV2L2	5	54654428	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	17638235	54654428	126260832	21	191											
PCDHA8	56140	broad.mit.edu;mdanderson.org	37	chr5	140221819	140221819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atacgggagaaatagtgattCggggtaatttggattttgaa	13	2	0	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	140221819	C	T	140221819	3	4	3	1	0	0	0	0	1	0	0	0	11609	875	31	1	915	1	PCDHA8	5	140221819	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	85567391	140221819	40693441	22	192											
FAM184A	79632	broad.mit.edu	37	chr6	119399412	119399413	+	Frame_Shift_Ins	INS	-	-	C													cggcgagggcgcgaatttggINSccgccgagccgccgtaatag					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	119399413	-	C	119399412	7	5	3	1	0	1	1	0	0	0	0	0	5555	1203	42	0	3441	0	FAM184A	6	119399412	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10		119399412	51715655	23	193											
FAM20C	56975	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	208958	208958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccagaattacgggcaagCgctgttcaaacccatgaagt	9	11	1	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	208958	C	T	208958	3	4	3	1	0	0	0	0	1	0	0	0	5584	768	27	1	855	1	FAM20C	7	208958	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		208958	158929705	24	194											
FKBP9	11328	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	33028128	33028128	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcttttctagctactctcgGaaccgcacgtttgacacgta	7	12	3	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	33028128	G	A	33028128	2	1	3	1	0	0	0	0	0	0	0	1	5964	1161	41	3		3	FKBP9	7	33028128	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	32819170	33028128	126110535	25	195											
UPK3B	80761	hgsc.bcm.edu	37	chr7	76144557	76144557	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggctgggggagatggggCgctgggagtgagtgcatggt	24	4	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	76144557	C	G	76144557	3	3	3	1	0	0	0	0	1	0	0	0	17117	768	27	5	1050	5	UPK3B	7	76144557	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	43116429	76144557	82994106	26	196											
NKX3-1	4824	broad.mit.edu	37	chr8	23538897	23538897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctccgaggagagctgctttCgcttagtcttatagcgtctg	12	10	2	1	rs150251660		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	23538897	C	T	23538897	3	4	3	1	0	0	0	0	1	0	0	0	10534	884	31	1	166	1	NKX3-1	8	23538897	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		23538897	122825125	27	197											
SCARA5	286133	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	27779572	27779572	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctccagccgctgcactgcGcccgccagcgccagcaacga	10	21	0	0	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	27779572	G	A	27779572	2	1	3	1	0	0	0	0	0	0	0	1	13976	1074	38	1		1	SCARA5	8	27779572	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	4240675	27779572	118584450	28	198											
ADAM2	2515	bcgsc.ca	37	chr8	39694680	39694680	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attcaattccttcctttattAttgaccgtattttctccgga	4	10	2	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	39694680	A	T	39694680	3	4	3	1	0	0	0	0	1	0	0	0	241	449	16	5	2176	5	ADAM2	8	39694680	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	11915108	39694680	106669342	29	199											
DPY19L4	286148	ucsc.edu	37	chr8	95793373	95793373	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attctatgacccagatacagTggaacttatgacctggataa	8	8	1	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	95793373	T	C	95793373	3	2	3	1	0	0	0	0	1	0	0	0	4780	1696	59	2	1756	2	DPY19L4	8	95793373	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	56098693	95793373	50570649	30	200											
PRSS3	5646	mdanderson.org	37	chr9	33796801	33796801	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctcactgctacaagacGtaagtgtggggcccctgact	12	12	1	2	rs143707562		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	33796801	G	A	33796801	5	1	3	1	0	0	0	0	0	0	1	0	12711	1159	40	1	422	1	PRSS3	9	33796801	Splice_Site	SNP	G	TCGA-KL-8325-01A-11D-2310-10		33796801	107416630	31	201											
UBQLN1	29979	broad.mit.edu	37	chr9	86322497	86322498	+	Frame_Shift_Ins	INS	-	-	C													gactttcatgattttgggctINSccgcggaggcagcggccgcg					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	86322498	-	C	86322497	7	5	3	1	0	1	1	0	0	0	0	0	17002	1551	54	0	1715	0	UBQLN1	9	86322497	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10	52525696	86322497	54890934	32	202	4	5									
UBQLN1	29979	broad.mit.edu	37	chr9	86322500	86322500	+	Frame_Shift_Del	DEL	G	G	-													ctttcatgattttgggctccGcggaggcagcggccgcgggg					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		-	86322500	G	-	86322500	7	5	3	1	0	1	0	1	0	0	0	0	17002	1087	38	0	1718	0	UBQLN1	9	86322500	Frame_Shift_Del	DEL	G	TCGA-KL-8325-01A-11D-2310-10	3	86322500	54890931	33	203	4	5									
UBQLN1	29979	bcgsc.ca	37	chr9	86322501	86322501	+	Frame_Shift_Del	DEL	G	G	-													tttcatgattttgggctccgCggaggcagcggccgcggggg					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		-	86322501	G	-	86322501	7	5	3	1	0	1	0	1	0	0	0	0	17002	768	27	0	1719	0	UBQLN1	9	86322501	Frame_Shift_Del	DEL	G	TCGA-KL-8325-01A-11D-2310-10	1	86322501	54890930	34	204	4	5									
UBQLN1	29979	broad.mit.edu	37	chr9	86322502	86322505	+	Frame_Shift_Del	DEL	GGAG	GGAG	-													ttcatgattttgggctccgcGgaggcagcggccgcgggggc					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	GGAG	GGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		-	86322505	GGAG	-	86322502	7	5	3	1	0	1	0	1	0	0	0	0	17002	1103	39	0	1720	0	UBQLN1	9	86322502	Frame_Shift_Del	DEL	GGAG	TCGA-KL-8325-01A-11D-2310-10	1	86322502	54890929	35	205	4	5									
UBQLN1	29979	bcgsc.ca	37	chr9	86322503	86322506	+	Frame_Shift_Del	DEL	GGAG	GGAG	-													tcatgattttgggctccgcgGaggcagcggccgcgggggcg					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	GGAG	GGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		-	86322506	GGAG	-	86322503	7	5	3	1	0	1	0	1	0	0	0	0	17002	1174	41	0	1721	0	UBQLN1	9	86322503	Frame_Shift_Del	DEL	GGAG	TCGA-KL-8325-01A-11D-2310-10	1	86322503	54890928	36	206	4	5									
INVS	27130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	103004868	103004868	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcaggccatgcacagattgtCcatctccttttagaaagaaa	7	10	2	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	103004868	C	T	103004868	2	4	3	1	0	0	0	0	0	0	0	1	7848	842	30	3		3	INVS	9	103004868	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10	16682365	103004868	38208563	37	207											
ITGA8	8516	broad.mit.edu;bcgsc.ca	37	chr10	15719635	15719635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccacaataaggtctccaTtctacaaaacagaaacagca	4	13	2	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	15719635	T	C	15719635	3	2	3	1	0	0	0	0	1	0	0	0	7943	1507	52	4	2659	4	ITGA8	10	15719635	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10		15719635	119815112	38	208											
ACTA2	59	ucsc.edu	37	chr10	90701565	90701565	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgcgtccagaggcatagAgagacagcaccgcctggata	13	10	0	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	90701565	A	G	90701565	3	3	3	1	0	0	0	0	1	0	0	0	192	304	11	2	722	2	ACTA2	10	90701565	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	74981930	90701565	44833182	39	209											
MUC6	4588	mdanderson.org	37	chr11	1017710	1017710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatggtgtgtggaggaagtGtgtgaatgtagggatgtaga	19	1	0	2	rs113964902		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	1017710	G	T	1017710	3	4	3	1	0	0	0	0	1	0	0	0	10058	1368	48	5	2240	5	MUC6	11	1017710	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10		1017710	133988806	40	210											
MMP26	56547	ucsc.edu	37	chr11	5010912	5010912	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttcctgaccaagaaggAgtcgccactccttacccagg	8	13	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	5010912	A	G	5010912	3	3	3	1	0	0	0	0	1	0	0	0	9741	304	11	2	140	2	MMP26	11	5010912	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	3993202	5010912	129995604	41	211											
MRGPRX3	117195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	18159150	18159150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catctggtaccactgccgccGccccagatacctgtcatcag	8	17	3	1	rs139790666		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	18159150	G	A	18159150	3	1	3	1	0	0	0	0	1	0	0	0	9846	1087	38	1	403	1	MRGPRX3	11	18159150	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	13148238	18159150	116847366	42	212											
OR5M1	390168	broad.mit.edu	37	chr11	56380362	56380363	+	Frame_Shift_Del	DEL	TT	TT	-													tgaagagagagcttgagagaTtaaagcctgcaactacaaac					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		-	56380363	TT	-	56380362	7	5	3	1	0	1	0	1	0	0	0	0	11251	1493	52	0	334	0	OR5M1	11	56380362	Frame_Shift_Del	DEL	TT	TCGA-KL-8325-01A-11D-2310-10	38221212	56380362	78626154	43	213											
NCAPD3	23310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	134073605	134073605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtaacagtcaactccagaCagtgtgcaaagctggacagt	11	9	1	1	rs146266771	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	134073605	C	T	134073605	3	4	3	1	0	0	0	0	1	0	0	0	10285	478	17	4	3184	4	NCAPD3	11	134073605	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	77693243	134073605	932911	44	214											
CACNA1C	775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	2783696	2783696	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caaggggctgaggatcctttCcgccctgcagggaacctaga	13	12	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	2783696	C	T	2783696	2	4	3	1	0	0	0	0	0	0	0	1	2565	854	30	3		3	CACNA1C	12	2783696	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10		2783696	131068199	45	215											
APOBEC1	339	broad.mit.edu;mdanderson.org	37	chr12	7802197	7802197	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagctaaaaggatgtgtggCggaatcgtttggtaatggca	15	4	0	0	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	7802197	C	T	7802197	2	4	3	1	0	0	0	0	0	0	0	1	789	755	27	1		1	APOBEC1	12	7802197	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10	5018501	7802197	126049698	46	216											
PRH2	5555	broad.mit.edu	37	chr12	11083460	11083461	+	Frame_Shift_Ins	INS	-	-	C													caccccaacagggaggccatINSccccctcctcctcaaggaag					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	11083461	-	C	11083460	7	5	3	1	0	1	1	0	0	0	0	0	12572	1432	50	0	310	0	PRH2	12	11083460	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10	3281263	11083460	122768435	47	217											
TAS2R30	259293	mdanderson.org	37	chr12	11286797	11286797	+	Missense_Mutation	SNP	A	A	G													caaaatttccaataacaaatAtaaccactattagaatggaa					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	11286797	A	G	11286797	3	3	3	1	0	0	0	0	1	0	0	0	15674	449	16	4	916	4	TAS2R30	12	11286797	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	203337	11286797	122565098	48	218	5	2	1	2		3	2	24	N	T_A	5.052084e-05
TAS2R30	259293	mdanderson.org	37	chr12	11286807	11286807	+	Missense_Mutation	SNP	T	T	C													aataacaaatataaccactaTtagaatggaaaaaatgatgg					rs113282241		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	11286807	T	C	11286807	3	2	3	1	0	0	0	0	1	0	0	0	15674	1493	52	4	926	4	TAS2R30	12	11286807	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10	10	11286807	122565088	49	219	5	2	1	2		3	2	24	N	T_A	5.052084e-05
TAS2R30	259293	mdanderson.org	37	chr12	11286820	11286820	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accactattagaatggaaaaAatgatgggcagaaaagttat	9	4	0	3	rs111958076		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	11286820	A	T	11286820	2	4	3	1	0	0	0	0	0	0	0	1	15674	10	1	5		5	TAS2R30	12	11286820	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10	13	11286820	122565075	50	220			1	2		3	2	24	N	T_A	5.052084e-05
PCDH20	64881	broad.mit.edu;mdanderson.org	37	chr13	61989199	61989199	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgctcctgggacgatgTagacgccccatatccaggcg	13	13	0	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	61989199	T	G	61989199	2	3	3	1	0	0	0	0	0	0	0	1	11594	1625	57	5		5	PCDH20	13	61989199	Silent	SNP	T	TCGA-KL-8325-01A-11D-2310-10		61989199	53180679	51	221											
PLEKHH1	57475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	68052685	68052685	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcaagtgcacatcacttaCccctactcttcagtgacaac	5	15	3	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	68052685	C	A	68052685	4	1	3	1	0	0	0	0	0	1	0	0	12156	518	18	5	3910	5	PLEKHH1	14	68052685	Nonsense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		68052685	39296855	52	222											
STON2	85439	broad.mit.edu	37	chr14	81737175	81737175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcacttcccggtcagagcCgagttcaaggtggcaaaaga	13	10	2	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	81737175	C	T	81737175	3	4	3	1	0	0	0	0	1	0	0	0	15418	652	23	1	267	1	STON2	14	81737175	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	13684490	81737175	25612365	53	223											
MAP1A	4130	hgsc.bcm.edu;bcgsc.ca	37	chr15	43819747	43819747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctatctcacccaagagcCtccagtctgacactccaacc	4	19	2	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	43819747	C	T	43819747	3	4	3	1	0	0	0	0	1	0	0	0	9304	681	24	4	6078	4	MAP1A	15	43819747	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		43819747	58711645	54	224											
GALK2	2585	broad.mit.edu	37	chr15	49493438	49493438	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgagcaccaggaagagtcAacataataggtatttcaaaa	8	7	2	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	49493438	A	G	49493438	3	3	3	1	0	0	0	0	1	0	0	0	6258	130	5	4	163	4	GALK2	15	49493438	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	5673691	49493438	53037954	55	225											
ALDH1A3	220	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	101427815	101427815	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaggctgcacaggttgcCttccagaggggctcgccatg	16	11	0	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	101427815	C	A	101427815	2	1	3	1	0	0	0	0	0	0	0	1	492	668	24	5		5	ALDH1A3	15	101427815	Silent	SNP	C	TCGA-KL-8325-01A-11D-2310-10	51934377	101427815	1103577	56	226											
CLN3	1201	broad.mit.edu	37	chr16	28503050	28503051	+	Frame_Shift_Ins	INS	-	-	C													tcaccctcggaatccgaaaaINSgcgccgccgcgagcctgcac					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	28503051	-	C	28503050	7	5	3	1	0	1	1	0	0	0	0	0	3572	72	3	0	1345	0	CLN3	16	28503050	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10		28503050	61851703	57	227											
HAS3	3038	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	69148916	69148916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctggctggggcacctctgGccgaaaaaccattgtggtga	13	10	2	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	69148916	G	A	69148916	3	1	3	1	0	0	0	0	1	0	0	0	7021	1203	42	3	1419	3	HAS3	16	69148916	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	40645866	69148916	21205837	58	228											
LHX1	3975	broad.mit.edu	37	chr17	35297586	35297587	+	Splice_Site	INS	-	-	C													ccacccccacccccccgcagINSgtgtttcggtaccaaatgcg					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		C	35297587	-	C	35297586	8	5	3	1	0	1	1	0	0	0	1	0	8833	1014	35	0	176	0	LHX1	17	35297586	Splice_Site	INS	-	TCGA-KL-8325-01A-11D-2310-10		35297586	45897624	59	229											
ACBD4	79777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	43215198	43215198	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagctggagcctgagctgGtgagcccagtccccattccc	12	15	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	43215198	G	A	43215198	5	1	3	1	0	0	0	0	0	0	1	0	124	1275	44	3	634	3	ACBD4	17	43215198	Splice_Site	SNP	G	TCGA-KL-8325-01A-11D-2310-10	7917612	43215198	37980012	60	230											
TTLL6	284076	broad.mit.edu	37	chr17	46882179	46882179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgctgctgggcattctgaAgtccgttttgtgcccctggg	13	11	1	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	46882179	A	G	46882179	3	3	3	1	0	0	0	0	1	0	0	0	16837	72	3	2	2534	2	TTLL6	17	46882179	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	3666981	46882179	34313031	61	231											
SERPINB12	89777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	61223519	61223519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcccttggtatggtaCgcttgggtgctagaagtgac	14	9	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	61223519	C	T	61223519	3	4	3	1	0	0	0	0	1	0	0	0	14196	536	19	1	129	1	SERPINB12	18	61223519	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10		61223519	16853729	62	232											
CNDP1	84735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	72238436	72238436	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggtgaaatgcagagacCaggattttcactcaggaacc	11	9	2	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	72238436	C	A	72238436	3	1	3	1	0	0	0	0	1	0	0	0	3622	595	21	5	798	5	CNDP1	18	72238436	Missense_Mutation	SNP	C	TCGA-KL-8325-01A-11D-2310-10	11014917	72238436	5838812	63	233											
MUC16	94025	broad.mit.edu	37	chr19	9054266	9054267	+	Frame_Shift_Ins	INS	-	-	G													caggcgaagtggatgtctgaINSgggcctttgactggtcttat					novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	9054267	-	G	9054266	7	5	3	1	0	1	1	0	0	0	0	0	10051	291	11	0	12491	0	MUC16	19	9054266	Frame_Shift_Ins	INS	-	TCGA-KL-8325-01A-11D-2310-10		9054266	50074717	64	234											
ZNF560	147741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	9578613	9578613	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taatgtgtgtttcaacatttAcagcatggcttgtggagtga	11	5	1	1	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	9578613	A	T	9578613	3	4	3	1	0	0	0	0	1	0	0	0	18096	391	14	5	1366	5	ZNF560	19	9578613	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	524347	9578613	49550370	65	235											
ZNF561	93134	broad.mit.edu	37	chr19	9724753	9724753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accctgctgaagtgatgaccGtttggttctaggttgtattt	11	7	1	3	rs144117005		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	9724753	G	A	9724753	3	1	3	1	0	0	0	0	1	0	0	0	18097	1144	40	1	1200	1	ZNF561	19	9724753	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	146140	9724753	49404230	66	236											
OCEL1	79629	mdanderson.org	37	chr19	17337557	17337557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgacgccccccgcaggacccGcccatcagcccggaaacccc	9	23	1	0	rs10425488	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	17337557	G	T	17337557	3	4	3	1	0	0	0	0	1	0	0	0	10895	1087	38	5	131	5	OCEL1	19	17337557	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	7612804	17337557	41791426	67	237											
PSG1	5669	mdanderson.org	37	chr19	43383680	43383680	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctctcctcacctgtgagcagGagccccttccatttgatgcg	9	15	2	2	rs1141653	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		T	43383680	G	T	43383680	2	4	3	1	0	0	0	0	0	0	0	1	12742	1161	41	5		5	PSG1	19	43383680	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	26046123	43383680	15745303	68	238											
SYMPK	8189	bcgsc.ca	37	chr19	46319186	46319186	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtcatccatgctgatgaAgatgcccggggtctcgcact	12	12	2	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	46319186	A	G	46319186	3	3	3	1	0	0	0	0	1	0	0	0	15540	72	3	2	222	2	SYMPK	19	46319186	Missense_Mutation	SNP	A	TCGA-KL-8325-01A-11D-2310-10	2935506	46319186	12809797	69	239											
GLTSCR2	29997	mdanderson.org	37	chr19	48258772	48258772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaagccccgaaggctgggGcggctcaagtgagaaccagg	16	11	1	1	rs11083895	byfrequency	TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	48258772	G	A	48258772	2	1	3	1	0	0	0	0	0	0	0	1	6531	1190	42	3		3	GLTSCR2	19	48258772	Silent	SNP	G	TCGA-KL-8325-01A-11D-2310-10	1939586	48258772	10870211	70	240											
TOP1	7150	broad.mit.edu	37	chr20	39708803	39708803	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatataaagccattaaagagAcctcgagatgaggatgagtg	12	5	0	4	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		G	39708803	A	G	39708803	2	3	3	1	0	0	0	0	0	0	0	1	16468	272	10	2		2	TOP1	20	39708803	Silent	SNP	A	TCGA-KL-8325-01A-11D-2310-10		39708803	23316717	71	241											
MYT1	4661	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	62839675	62839675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaggacatgatgacccggGgaaacctgggcctcctggag	15	11	0	2	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	62839675	G	A	62839675	3	1	3	1	0	0	0	0	1	0	0	0	10184	1233	43	3	1144	3	MYT1	20	62839675	Missense_Mutation	SNP	G	TCGA-KL-8325-01A-11D-2310-10	23130872	62839675	185845	72	242											
PKDREJ	10343	broad.mit.edu	37	chr22	46657795	46657795	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caatttaggaacaaagaaaaTctatcagagacaatgaagtt	7	5	2	3	novel		TCGA-KL-8325-01A-11D-2310-10	TCGA-KL-8325-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fc0e0e8-1b0f-400c-b4cf-126193283695	4ff5a4a6-94f8-4f4c-ae7c-9b1ddb971fb7		A	46657795	T	A	46657795	3	1	3	1	0	0	0	0	1	0	0	0	12050	1432	50	5	5340	5	PKDREJ	22	46657795	Missense_Mutation	SNP	T	TCGA-KL-8325-01A-11D-2310-10		46657795	4646771	73	243											
SPEN	23013	broad.mit.edu	37	chr1	16260459	16260459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgaggccccgcccccgcCagttgactctaaaaagcctt	8	16	1	2	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	16260459	C	T	16260459	3	4	4	1	0	0	0	0	1	0	0	0	15138	594	21	4	7766	4	SPEN	1	16260459	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		16260459	232990162	1	244											
SPATA21	374955	broad.mit.edu	37	chr1	16731518	16731518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccagcgtcacagagaagCccattaggagcaggatattc	13	10	1	1	rs140528029	alternate_allele	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	16731518	C	T	16731518	3	4	4	1	0	0	0	0	1	0	0	0	15107	739	26	3	678	3	SPATA21	1	16731518	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	471059	16731518	232519103	2	245											
AKR7L	246181	mdanderson.org	37	chr1	19600376	19600377	+	RNA	DNP	TT	TT	GC													tctgcagtcgctgctgcccaTtcggagccccaggccgccaa					novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		GC	19600377	TT	GC	19600376	1	3	4	0	1	0	0	0	0	0	0	0	477	1493	52	5		5	AKR7L	1	19600376	RNA	DNP	TT	TCGA-KL-8326-01A-11D-2310-10	2868858	19600376	229650245	3	246											
SYCP1	6847	broad.mit.edu	37	chr1	115418696	115418696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actttatatttcagaaaatgAtaacagcttttgaggaactt	6	5	1	3	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	115418696	A	G	115418696	3	3	4	1	0	0	0	0	1	0	0	0	15532	333	12	4	698	4	SYCP1	1	115418696	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	95818320	115418696	133831925	4	247											
LCE3C	353144	broad.mit.edu	37	chr1	152573449	152573449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggcagtggtcagcaagGcgggggctcctgccgtggcc	19	12	1	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	152573449	G	A	152573449	3	1	4	1	0	0	0	0	1	0	0	0	8733	1203	42	3	244	3	LCE3C	1	152573449	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	37154753	152573449	96677172	5	248											
SMYD1	150572	broad.mit.edu	37	chr2	88383883	88383883	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaagaggcaggagaagctCcatcgctgtgggcagtgcaa	14	9	1	2	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	88383883	C	T	88383883	2	4	4	1	0	0	0	0	0	0	0	1	14919	842	30	3		3	SMYD1	2	88383883	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		88383883	154815490	6	249											
REV1	51455	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	100038086	100038086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtctaccagcgcttcatcaCaactgacagcttcaatgtta	6	12	4	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	100038086	C	T	100038086	3	4	4	1	0	0	0	0	1	0	0	0	13331	478	17	4	2101	4	REV1	2	100038086	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	11654203	100038086	143161287	7	250											
CREG2	200407	hgsc.bcm.edu	37	chr2	102000023	102000024	+	Missense_Mutation	DNP	GC	GC	TA													ctccccttctgattctggcaGcatcagcgaggccatggggt					novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		TA	102000024	GC	TA	102000023	3	4	4	1	0	0	0	0	1	0	0	0	3894	962	34	5	301	5	CREG2	2	102000023	Missense_Mutation	DNP	GC	TCGA-KL-8326-01A-11D-2310-10	1961937	102000023	141199350	8	251											
LYPD1	116372	ucsc.edu	37	chr2	133427465	133427465	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattctcacctggaagcaagAacaatccgcaaaaagttgcc	7	11	1	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	133427465	A	G	133427465	3	3	4	1	0	0	0	0	1	0	0	0	9182	246	9	4	396	4	LYPD1	2	133427465	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	31427442	133427465	109771908	9	252											
ECEL1	9427	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	233347864	233347864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcaggaagtccgggtagCcgaccatcaccatcatgtac	10	13	3	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	233347864	C	T	233347864	3	4	4	1	0	0	0	0	1	0	0	0	4928	739	26	3	835	3	ECEL1	2	233347864	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	99920399	233347864	9851509	10	253											
ILKAP	80895	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	239090747	239090747	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatcctcatccgctcttcAtactgagttggattatgctc	7	11	3	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	239090747	A	C	239090747	4	2	4	1	0	0	0	0	0	1	0	0	7775	224	8	5	399	5	ILKAP	2	239090747	Nonsense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	5742883	239090747	4108626	11	254											
OXTR	5021	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	8809619	8809619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaacactgccaccaccagGtcggcgatgcttaggtgctt	11	12	0	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	8809619	G	T	8809619	3	4	4	1	0	0	0	0	1	0	0	0	11417	1252	44	5	922	5	OXTR	3	8809619	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		8809619	189212811	12	255											
CELSR3	1951	broad.mit.edu	37	chr3	48694660	48694661	+	Frame_Shift_Ins	INS	-	-	G													cgaggaagcggcccagcagcINSggtgacaggaagcgctcctg					novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	48694661	-	G	48694660	7	5	4	1	0	1	1	0	0	0	0	0	3252	755	27	0	6204	0	CELSR3	3	48694660	Frame_Shift_Ins	INS	-	TCGA-KL-8326-01A-11D-2310-10	39885041	48694660	149327770	13	256											
SIDT1	54847	broad.mit.edu	37	chr3	113342326	113342326	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actttgcttcctacatgctgGgcatcttcatctgtaacctt	6	12	3	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	113342326	G	T	113342326	3	4	4	1	0	0	0	0	1	0	0	0	14400	1232	43	5	2229	5	SIDT1	3	113342326	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	64647666	113342326	84680104	14	257											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	126369744	126369744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggggagccattatggccGccggaccactaaacggagct	14	11	0	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	126369744	G	A	126369744	3	1	4	1	0	0	0	0	1	0	0	0	5741	1087	38	1	7607	1	FAT4	4	126369744	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		126369744	64784532	15	258											
SPZ1	84654	mdanderson.org	37	chr5	79616400	79616400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgacaaaatcaatgaaatGttatcaacaaacctgcctgt	5	9	2	2	rs200562315	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	79616400	G	A	79616400	3	1	4	1	0	0	0	0	1	0	0	0	15227	1377	48	4	368	4	SPZ1	5	79616400	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		79616400	101298860	16	259											
MEGF10	84466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	126776527	126776527	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgggcagtgtacttgccGcactggattcatgggacggc	14	10	2	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	126776527	G	A	126776527	3	1	4	1	0	0	0	0	1	0	0	0	9537	1087	38	1	2396	1	MEGF10	5	126776527	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	47160127	126776527	54138733	17	260											
TRIM15	89870	broad.mit.edu	37	chr6	30139748	30139748	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcccggcggttctgggCttcccgggcttctcctccgg	14	17	2	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	30139748	C	T	30139748	2	4	4	1	0	0	0	0	0	0	0	1	16595	784	28	4		4	TRIM15	6	30139748	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		30139748	140975319	18	261											
HLA-DRB5	3127	mdanderson.org	37	chr6	32497900	32497900	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacccacaatgtgcacttAcgtcgggtgtccccagccaa	9	15	0	0	rs78612727	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	32497900	A	G	32497900	5	3	4	1	0	0	0	0	0	0	1	0	7267	405	14	2	722	2	HLA-DRB5	6	32497900	Splice_Site	SNP	A	TCGA-KL-8326-01A-11D-2310-10	2358152	32497900	138617167	19	262											
HLA-DPB1	3115	broad.mit.edu	37	chr6	33048688	33048689	+	Frame_Shift_Ins	INS	-	-	A													acacaactacgagctgggcgINSggcccatgaccctgcagcgc					rs141530233		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	33048689	-	A	33048688	7	5	4	1	0	1	1	0	0	0	0	0	7261	1116	39	0	346	0	HLA-DPB1	6	33048688	Frame_Shift_Ins	INS	-	TCGA-KL-8326-01A-11D-2310-10	550788	33048688	138066379	20	263											
STXBP5	134957	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	147646106	147646106	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttattttagagttaaaaactCaccacttaaacagtctccag	4	9	2	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	147646106	C	A	147646106	4	1	4	1	0	0	0	0	0	1	0	0	15456	838	29	5	1880	5	STXBP5	6	147646106	Nonsense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	114597418	147646106	23468961	21	264											
WBSCR17	64409	ucsc.edu	37	chr7	70800582	70800582	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggttatggtgggcggggTaaagggggccttccggctac	19	7	0	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	70800582	T	G	70800582	2	3	4	1	0	0	0	0	0	0	0	1	17370	1625	57	5		5	WBSCR17	7	70800582	Silent	SNP	T	TCGA-KL-8326-01A-11D-2310-10		70800582	88338081	22	265											
STEAP1	26872	mdanderson.org	37	chr7	89791240	89791240	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggtaggtccaacaaaatAaagaagatgcctggattgag	11	6	1	3	rs199817828		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	89791240	A	G	89791240	3	3	4	1	0	0	0	0	1	0	0	0	15377	363	13	4	620	4	STEAP1	7	89791240	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	18990658	89791240	69347423	23	266											
DOCK4	9732	bcgsc.ca	37	chr7	111512561	111512561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaatttcttttaatttagAgagacagccagtgatcttgt	7	6	3	3	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	111512561	A	G	111512561	3	3	4	1	0	0	0	0	1	0	0	0	4726	304	11	2	4236	2	DOCK4	7	111512561	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	21721321	111512561	47626102	24	267											
ST7	7982	broad.mit.edu	37	chr7	116759716	116759716	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggggttgacaacaactcTtccaacaattctaattccag	8	10	2	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	116759716	T	C	116759716	2	2	4	1	0	0	0	0	0	0	0	1	15329	1596	56	2		2	ST7	7	116759716	Silent	SNP	T	TCGA-KL-8326-01A-11D-2310-10	5247155	116759716	42378947	25	268											
FLNC	2318	broad.mit.edu	37	chr7	128483327	128483327	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaaggtggacccatcccaCgatgccagcaaagtcaaggc	10	13	2	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	128483327	C	T	128483327	2	4	4	1	0	0	0	0	0	0	0	1	5984	535	19	1		1	FLNC	7	128483327	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10	11723611	128483327	30655336	26	269											
KLRG2	346689	ucsc.edu;bcgsc.ca	37	chr7	139168253	139168253	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccggccggacttgggctgcTttcgggaccttcaggttgtc	14	13	1	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	139168253	T	C	139168253	3	2	4	1	0	0	0	0	1	0	0	0	8483	1609	56	2	1113	2	KLRG2	7	139168253	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	10684926	139168253	19970410	27	270											
MLL3	58508	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr7	151855973	151855973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtgggtaaacgtgtcaGtgctagagtacatagcttgt	12	6	2	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	151855973	G	A	151855973	3	1	4	1	0	0	0	0	1	0	0	0	9699	1029	36	4	3154	4	MLL3	7	151855973	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	12687720	151855973	7282690	28	271											
HSF1	3297	bcgsc.ca	37	chr8	145535243	145535243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attccatgcccaagtatagcCggcagttctccctggagcac	9	14	1	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	145535243	C	T	145535243	3	4	4	1	0	0	0	0	1	0	0	0	7453	643	23	1	705	1	HSF1	8	145535243	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		145535243	828779	29	272											
MAPKAP1	79109	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr9	128246857	128246857	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaaaaccccgtctgcccTtgaacctggggaggaaaagg	11	12	2	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	128246857	T	G	128246857	2	3	4	1	0	0	0	0	0	0	0	1	9365	1608	56	5		5	MAPKAP1	9	128246857	Silent	SNP	T	TCGA-KL-8326-01A-11D-2310-10		128246857	12966574	30	273											
TSC1	7248	broad.mit.edu	37	chr9	135797337	135797349	+	Frame_Shift_Del	DEL	CGAGATAGACTTC	CGAGATAGACTTC	-													cacactggcatggagatggaCgagatagacttccgccacgt					novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	CGAGATAGACTTC	CGAGATAGACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		-	135797349	CGAGATAGACTTC	-	135797337	7	5	4	1	0	1	0	1	0	0	0	0	16710	536	19	0	3030	0	TSC1	9	135797337	Frame_Shift_Del	DEL	CGAGATAGACTTC	TCGA-KL-8326-01A-11D-2310-10	7550480	135797337	5416094	31	274	6	2									
TSC1	7248	bcgsc.ca	37	chr9	135797338	135797350	+	Frame_Shift_Del	DEL	CGAGATAGACTTC	CGAGATAGACTTC	-													acactggcatggagatggacGagatagacttccgccacgtg					novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	CGAGATAGACTTC	CGAGATAGACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		-	135797350	CGAGATAGACTTC	-	135797338	7	5	4	1	0	1	0	1	0	0	0	0	16710	1045	37	0	3031	0	TSC1	9	135797338	Frame_Shift_Del	DEL	CGAGATAGACTTC	TCGA-KL-8326-01A-11D-2310-10	1	135797338	5416093	32	275	6	2									
CUBN	8029	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	16941101	16941101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtaatggccgtccaggaaCatctgctgttttcgggaaaa	12	8	1	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	16941101	C	T	16941101	3	4	4	1	0	0	0	0	1	0	0	0	4082	478	17	4	2435	4	CUBN	10	16941101	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		16941101	118593646	33	276											
SIRT1	23411	broad.mit.edu	37	chr10	69644881	69644883	+	In_Frame_Del	DEL	GGC	GGC	-													gagggcgaggaggaggaagaGgcggcggcggcggcgattgg					rs36062014	byfrequency;alternate_allele	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		-	69644883	GGC	-	69644881	7	5	4	1	0	1	0	1	0	0	0	0	14435	991	35	0	404	0	SIRT1	10	69644881	In_Frame_Del	DEL	GGC	TCGA-KL-8326-01A-11D-2310-10	52703780	69644881	65889866	34	277											
AIFM2	84883	ucsc.edu	37	chr10	71877654	71877654	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccttgtcagccagggccActtgggagtgaatgagagtg	15	9	1	2	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	71877654	A	C	71877654	3	2	4	1	0	0	0	0	1	0	0	0	427	159	6	5	607	5	AIFM2	10	71877654	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	2232773	71877654	63657093	35	278											
CYP26C1	340665	ucsc.edu	37	chr10	94825774	94825774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccagtgccagcacctcgcTcgtcctgctgctactgcagc	11	17	0	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	94825774	T	C	94825774	3	2	4	1	0	0	0	0	1	0	0	0	4188	1551	54	2	941	2	CYP26C1	10	94825774	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	22948120	94825774	40708973	36	279											
BLNK	29760	broad.mit.edu;hgsc.bcm.edu	37	chr10	98006782	98006782	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccttcattgtttttaataTcatggaccatcttttgaagc	5	9	3	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	98006782	T	C	98006782	3	2	4	1	0	0	0	0	1	0	0	0	1452	1435	50	4	1363	4	BLNK	10	98006782	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	3181008	98006782	37527965	37	280											
MTL5	9633	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	68514791	68514791	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcaaagttgcttcttccGgattattacttgtagtagta	8	7	2	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	68514791	G	A	68514791	3	1	4	1	0	0	0	0	1	0	0	0	10014	1116	39	1	1047	1	MTL5	11	68514791	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10		68514791	66491725	38	281											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	103153739	103153739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taattgcttttattaaaggaCtctcaacaaaaaatacgtga	5	6	1	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	103153739	C	A	103153739	3	1	4	1	0	0	0	0	1	0	0	0	4883	564	20	5	11130	5	DYNC2H1	11	103153739	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	34638948	103153739	31852777	39	282											
ZBTB16	7704	hgsc.bcm.edu;mdanderson.org	37	chr11	113934295	113934295	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgcatatacagccacGctgcaagccaaggcggagga	13	10	0	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	113934295	G	T	113934295	2	4	4	1	0	0	0	0	0	0	0	1	17631	1074	38	5		5	ZBTB16	11	113934295	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10	10780556	113934295	21072221	40	283											
OR6T1	219874	broad.mit.edu	37	chr11	123814285	123814285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgagatggtgtgatccccCgtgaggatgacgacaagcat	13	8	0	4	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	123814285	C	T	123814285	2	4	4	1	0	0	0	0	0	0	0	1	11289	639	23	1		1	OR6T1	11	123814285	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10	9879990	123814285	11192231	41	284											
OR10G8	219869	mdanderson.org	37	chr11	123900382	123900382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcatgggccttccccatgCcccagcgctggacgcccccc	9	22	1	0	rs73028928	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	123900382	C	T	123900382	3	4	4	1	0	0	0	0	1	0	0	0	10982	739	26	3	55	3	OR10G8	11	123900382	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	86097	123900382	11106134	42	285											
LETMD1	25875	broad.mit.edu;bcgsc.ca	37	chr12	51449713	51449713	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tcatgctttccggaagcagtCccacccagaaattattagtt	7	11	1	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	51449713	C	G	51449713	3	3	4	1	0	0	0	0	1	0	0	0	8798	855	30	5	587	5	LETMD1	12	51449713	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		51449713	82402182	43	286											
NR4A1	3164	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr12	52448851	52448851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgagggctcggggatactgGatacacccgtgacctcaacc	12	12	1	2	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	52448851	G	A	52448851	3	1	4	1	0	0	0	0	1	0	0	0	10711	1174	41	3	741	3	NR4A1	12	52448851	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	999138	52448851	81403044	44	287											
NBEA	26960	broad.mit.edu	37	chr13	36167554	36167554	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgttgcaaggtcttggagAactagtcagagagatacttc	11	8	2	3	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	36167554	A	G	36167554	2	3	4	1	0	0	0	0	0	0	0	1	10265	243	9	4		4	NBEA	13	36167554	Silent	SNP	A	TCGA-KL-8326-01A-11D-2310-10		36167554	79002324	45	288											
RALGAPA1	253959	broad.mit.edu	37	chr14	36190999	36190999	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggccaggctgatcacgacTccatcctctagaaaatgact	8	12	2	3	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	36190999	T	C	36190999	3	2	4	1	0	0	0	0	1	0	0	0	13105	1551	54	2	4202	2	RALGAPA1	14	36190999	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10		36190999	71158541	46	289											
YLPM1	56252	broad.mit.edu	37	chr14	75301975	75301975	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttctttttaggtcagatGggcagacctggaagagaaga	13	5	2	4	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	75301975	G	A	75301975	4	1	4	1	0	0	0	0	0	1	0	0	17592	1357	47	4	6380	4	YLPM1	14	75301975	Nonsense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	39110976	75301975	32047565	47	290											
JAG2	3714	ucsc.edu	37	chr14	105614515	105614515	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcggaaggtgtcgccgctgTcgtagcaggtgccaccgttg	16	11	0	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	105614515	T	C	105614515	3	2	4	1	0	0	0	0	1	0	0	0	7996	1667	58	2	1570	2	JAG2	14	105614515	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	30312540	105614515	1735025	48	291											
CEP152	22995	broad.mit.edu	37	chr15	49052452	49052452	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctgatgagcattttgcacAgctatttctacctgtaggac	9	10	1	2	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	49052452	A	T	49052452	2	4	4	1	0	0	0	0	0	0	0	1	3277	175	7	5		5	CEP152	15	49052452	Silent	SNP	A	TCGA-KL-8326-01A-11D-2310-10		49052452	53478940	49	292											
RFX7	64864	ucsc.edu	37	chr15	56388045	56388045	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaagttaagttctgagaAgcaactgatagagtgatagt	12	3	1	5	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	56388045	A	T	56388045	2	4	4	1	0	0	0	0	0	0	0	1	13360	59	3	5		5	RFX7	15	56388045	Silent	SNP	A	TCGA-KL-8326-01A-11D-2310-10	7335593	56388045	46143347	50	293											
NOX5	79400	broad.mit.edu	37	chr15	69320701	69320701	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcttccaggtgtatgacatCgatggtaagggctcttcctg	11	10	2	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	69320701	C	T	69320701	2	4	4	1	0	0	0	0	0	0	0	1	10638	874	31	1		1	NOX5	15	69320701	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10	12932656	69320701	33210691	51	294											
MYH13	8735	broad.mit.edu	37	chr17	10263502	10263502	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgaggatagactggttgtctCgatctagaaatgcagaggga	14	5	2	4	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	10263502	C	G	10263502	3	3	4	1	0	0	0	0	1	0	0	0	10110	884	31	5	5451	5	MYH13	17	10263502	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		10263502	70931708	52	295											
ATP6V0A1	535	mdanderson.org	37	chr17	40666439	40666439	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccatcctcctgatcatggAgggcctctcggcctttctcc	10	16	3	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	40666439	A	G	40666439	3	3	4	1	0	0	0	0	1	0	0	0	1172	304	11	2	2480	2	ATP6V0A1	17	40666439	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	30402937	40666439	40528771	53	296											
CARD14	79092	broad.mit.edu	37	chr17	78178060	78178060	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accacagaagctggtccgcaTcgtcagtatggacaaagcca	10	12	1	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	78178060	T	A	78178060	3	1	4	1	0	0	0	0	1	0	0	0	2671	1435	50	5	2545	5	CARD14	17	78178060	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	37511621	78178060	3017150	54	297											
ZNF676	163223	mdanderson.org	37	chr19	22363589	22363589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttgccacattcttcacaCttgtagggtttctctccagt	7	12	3	0	rs80146743	byfrequency	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	22363589	C	T	22363589	2	4	4	1	0	0	0	0	0	0	0	1	18188	564	20	4		4	ZNF676	19	22363589	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		22363589	36765394	55	298											
FCGBP	8857	broad.mit.edu	37	chr19	40396331	40396332	+	Frame_Shift_Ins	INS	-	-	C													ccctcgggtgccgacaggctINScgggcagctcccaggacagg					novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		C	40396332	-	C	40396331	7	5	4	1	0	1	1	0	0	0	0	0	5827	1551	54	0	9239	0	FCGBP	19	40396331	Frame_Shift_Ins	INS	-	TCGA-KL-8326-01A-11D-2310-10	18032742	40396331	18732652	56	299											
JAG1	182	hgsc.bcm.edu;mdanderson.org	37	chr20	10626014	10626014	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacttacgtgagtggcaGgtctttcctttccacccatt	7	13	1	1	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	10626014	G	T	10626014	2	4	4	1	0	0	0	0	0	0	0	1	7995	987	35	5		5	JAG1	20	10626014	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10		10626014	52399506	57	300											
KIAA1755	85449	broad.mit.edu;bcgsc.ca	37	chr20	36869241	36869241	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttcagaggctgcagctGcaggagaagctggggacagg	17	7	1	2	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	36869241	G	T	36869241	3	4	4	1	0	0	0	0	1	0	0	0	8318	1319	46	5	2358	5	KIAA1755	20	36869241	Missense_Mutation	SNP	G	TCGA-KL-8326-01A-11D-2310-10	26243227	36869241	26156279	58	301											
SLC35C2	51006	broad.mit.edu	37	chr20	44984494	44984494	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagatgaagaggacagctgAggatttggtcattgtgtacc	13	6	1	4	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		G	44984494	A	G	44984494	3	3	4	1	0	0	0	0	1	0	0	0	14678	304	11	2	766	2	SLC35C2	20	44984494	Missense_Mutation	SNP	A	TCGA-KL-8326-01A-11D-2310-10	8115253	44984494	18041026	59	302											
ELFN2	114794	ucsc.edu	37	chr22	37769129	37769129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtcacagcttctgctgggCggagacccccttccagtaat	12	13	2	1	rs61737924	alternate_allele	TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	37769129	C	T	37769129	3	4	4	1	0	0	0	0	1	0	0	0	5097	768	27	1	20	1	ELFN2	22	37769129	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10		37769129	13535437	60	303											
TYMP	1890	broad.mit.edu	37	chr22	50965605	50965605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accgctcaccagcgtctttgCcagctcccgggcctgctcct	9	19	2	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	50965605	C	T	50965605	3	4	4	1	0	0	0	0	1	0	0	0	16917	739	26	3	714	3	TYMP	22	50965605	Missense_Mutation	SNP	C	TCGA-KL-8326-01A-11D-2310-10	13196476	50965605	338961	61	304											
DUSP21	63904	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	44703528	44703528	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcaatcgcatcaccgcCattgtcaatgcctcggtgga	9	14	2	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	44703528	C	T	44703528	2	4	4	1	0	0	0	0	0	0	0	1	4857	581	21	4		4	DUSP21	23	44703528	Silent	SNP	C	TCGA-KL-8326-01A-11D-2310-10		44703528	110567032	62	305											
PJA1	64219	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	68382228	68382228	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctccacctggaagtactgTgtggcatatcgtcatcatca	8	13	3	0	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	68382228	T	A	68382228	3	1	4	1	0	0	0	0	1	0	0	0	12041	1696	59	5	1081	5	PJA1	23	68382228	Missense_Mutation	SNP	T	TCGA-KL-8326-01A-11D-2310-10	23678700	68382228	86888332	63	306											
PCDH11X	27328	broad.mit.edu	37	chrX	91090725	91090725	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaccggagatgtgccactGattcgaattgaagaggatac	12	7	0	5	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		T	91090725	G	T	91090725	2	4	4	1	0	0	0	0	0	0	0	1	11587	1277	45	5		5	PCDH11X	23	91090725	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10	22708497	91090725	64179835	64	307											
CXorf66	347487	hgsc.bcm.edu;mdanderson.org	37	chrX	139038874	139038874	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgatgttttagatgacttGgctgctatgccttttttctt	8	6	1	3	novel		TCGA-KL-8326-01A-11D-2310-10	TCGA-KL-8326-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4729fe4b-c1ac-489b-a67e-91e5c5e3ff8c	5d6a5ba0-8213-4f89-85e0-021e4b4cc894		A	139038874	G	A	139038874	2	1	4	1	0	0	0	0	0	0	0	1	4149	1335	47	4		4	CXorf66	23	139038874	Silent	SNP	G	TCGA-KL-8326-01A-11D-2310-10	47948149	139038874	16231686	65	308											
HOOK1	51361	broad.mit.edu	37	chr1	60314061	60314061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctacaagatctgaatgAccttcgcaagcaggtgaaaa	10	8	1	4	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	60314061	A	G	60314061	3	3	5	1	0	0	0	0	1	0	0	0	7340	275	10	2	1046	2	HOOK1	1	60314061	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10		60314061	188936560	1	309											
FAM189B	10712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	155221684	155221684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtgggcctgagactgaccGctcaggggccagctgctggg	17	12	1	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	155221684	G	A	155221684	3	1	5	1	0	0	0	0	1	0	0	0	5562	1086	38	1	1400	1	FAM189B	1	155221684	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	94907623	155221684	94028937	2	310											
ASTN1	460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	176915167	176915167	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttcatgggaagctccctgCtttccccacagtcacttccc	8	16	2	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	176915167	C	T	176915167	3	4	5	1	0	0	0	0	1	0	0	0	1068	797	28	4	1788	4	ASTN1	1	176915167	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	21693483	176915167	72335454	3	311											
LMOD1	25802	broad.mit.edu	37	chr1	201868999	201868999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgttggccttgagcatgAtggcaatggcaaaggccacg	13	9	1	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	201868999	A	G	201868999	3	3	5	1	0	0	0	0	1	0	0	0	8920	333	12	4	668	4	LMOD1	1	201868999	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	24953832	201868999	47381622	4	312											
EXOC8	149371	broad.mit.edu;mdanderson.org	37	chr1	231471905	231471905	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgatatcacccagttgctgGcaatgctccttagccacttt	7	14	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	231471905	G	A	231471905	2	1	5	1	0	0	0	0	0	0	0	1	5350	1195	42	3		3	EXOC8	1	231471905	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10	29602906	231471905	17778716	5	313											
SLC3A1	6519	ucsc.edu	37	chr2	44528268	44528268	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagcccggcagatacaggTtgaccacggcatatgctctc	12	13	1	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	44528268	T	G	44528268	5	3	5	1	0	0	0	0	0	0	1	0	14724	1739	60	5	1160	5	SLC3A1	2	44528268	Splice_Site	SNP	T	TCGA-KL-8327-01A-11D-2310-10		44528268	198671105	6	314											
POTEF	728378	mdanderson.org	37	chr2	130833115	130833115	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtactattttcatgcaagaTgtctttttctttcttacaac	4	9	4	1	rs2599800		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	130833115	T	A	130833115	3	1	5	1	0	0	0	0	1	0	0	0	12345	1464	51	5	1301	5	POTEF	2	130833115	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	86304847	130833115	112366258	7	315											
DNAH1	25981	bcgsc.ca	37	chr3	52387428	52387428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccttggacatccgggccCgcatcgaggagttcaaacca	12	13	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	52387428	C	T	52387428	3	4	5	1	0	0	0	0	1	0	0	0	4634	652	23	1	3333	1	DNAH1	3	52387428	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		52387428	145635002	8	316											
CORIN	10699	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr4	47667069	47667069	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaggagggatatgctcGcctgtattcacatcacattt	9	10	2	0	rs61760489		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	47667069	G	A	47667069	2	1	5	1	0	0	0	0	0	0	0	1	3781	1074	38	1		1	CORIN	4	47667069	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		47667069	143487207	9	317											
DSPP	1834	bcgsc.ca	37	chr4	88536234	88536239	+	In_Frame_Del	DEL	AGTGAT	AGTGAT	-													cagtgatagcagcaacagcaGtgatagcagtgatagcagtg					rs200486992	alternate_allele	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	AGTGAT	AGTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		-	88536239	AGTGAT	-	88536234	7	5	5	1	0	1	0	1	0	0	0	0	4819	1029	36	0	2434	0	DSPP	4	88536234	In_Frame_Del	DEL	AGTGAT	TCGA-KL-8327-01A-11D-2310-10	40869165	88536234	102618042	10	318											
PCDHB10	56126	bcgsc.ca	37	chr5	140573754	140573754	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcccccgcgctgagcagAgaggcgctggtgcgcgtgct	17	14	0	2	rs77697313		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	140573754	A	C	140573754	3	2	5	1	0	0	0	0	1	0	0	0	11614	301	11	5	1631	5	PCDHB10	5	140573754	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10		140573754	40341506	11	319											
CSF1R	1436	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	149460495	149460495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggggccatcccattccaCgctgccattgcccacacatc	9	17	0	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	149460495	C	T	149460495	3	4	5	1	0	0	0	0	1	0	0	0	3963	536	19	1	2856	1	CSF1R	5	149460495	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	8886741	149460495	31454765	12	320											
BEND6	221336	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	56846621	56846621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagaaaatgcagaagatcGtgcagacagatgaaattacc	10	6	0	6	rs199964177		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	56846621	G	A	56846621	3	1	5	1	0	0	0	0	1	0	0	0	1406	1145	40	1	15	1	BEND6	6	56846621	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		56846621	114268446	13	321											
NT5DC1	221294	broad.mit.edu	37	chr6	116560197	116560197	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagttttgggactggaaaAtacagaagactccttggttt	10	6	1	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	116560197	A	G	116560197	3	3	5	1	0	0	0	0	1	0	0	0	10769	101	4	4	1205	4	NT5DC1	6	116560197	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	59713576	116560197	54554870	14	322											
TNRC18	84629	mdanderson.org	37	chr7	5352659	5352659	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaggatgaggaggaggagga	26	0	0	1	rs138591330	by1000genomes	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	5352659	G	T	5352659	2	4	5	1	0	0	0	0	0	0	0	1	16443	987	35	5		5	TNRC18	7	5352659	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		5352659	153786004	15	323											
FAM86B1	85002	mdanderson.org	37	chr8	12043930	12043930	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctacgtcccagtccagctGggccactgtcaccctggggc	12	16	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	12043930	G	A	12043930	4	1	5	1	0	0	0	0	0	1	0	0	5693	1357	47	4	331	4	FAM86B1	8	12043930	Nonsense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		12043930	134320092	16	324											
SNX31	169166	broad.mit.edu	37	chr8	101661717	101661717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcggaccgctgctgggacAccgggatacagaaatgcatc	13	12	0	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	101661717	A	G	101661717	3	3	5	1	0	0	0	0	1	0	0	0	14999	159	6	2	1352	2	SNX31	8	101661717	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	89617787	101661717	44702305	17	325											
PPRC1	23082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	103899427	103899427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagactagttctgccttgCagctgcttatgcctacactg	9	11	1	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	103899427	C	A	103899427	3	1	5	1	0	0	0	0	1	0	0	0	12495	711	25	5	1180	5	PPRC1	10	103899427	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		103899427	31635320	18	326											
BTBD16	118663	ucsc.edu	37	chr10	124090744	124090744	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttcccagagtcatggctcGaccaggttacagtcaaccat	8	13	3	1	rs201203665	alternate_allele	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	124090744	G	C	124090744	3	2	5	1	0	0	0	0	1	0	0	0	1549	1058	37	5	1099	5	BTBD16	10	124090744	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	20191317	124090744	11444003	19	327											
MRPL49	740	broad.mit.edu;bcgsc.ca	37	chr11	64889873	64889873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggagaaccggtgtccagCggggctgcgggctacggctg	19	10	0	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	64889873	C	T	64889873	3	4	5	1	0	0	0	0	1	0	0	0	9891	759	27	1	57	1	MRPL49	11	64889873	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		64889873	70116643	20	328											
CACNA1C	775	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	2788865	2788865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgcctccctcgccccgccGgctaccccagcacggtcagc	10	22	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	2788865	G	A	2788865	3	1	5	1	0	0	0	0	1	0	0	0	2565	1116	39	1	5896	1	CACNA1C	12	2788865	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		2788865	131063030	21	329											
GRIN2B	2904	broad.mit.edu;bcgsc.ca	37	chr12	13906390	13906390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattccatctctcactctggCggggaggccatagtcccatt	9	13	3	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	13906390	C	T	13906390	3	4	5	1	0	0	0	0	1	0	0	0	6838	768	27	1	3627	1	GRIN2B	12	13906390	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	11117525	13906390	119945505	22	330											
CSAD	51380	ucsc.edu	37	chr12	53565216	53565216	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacagcatacatgttggagAtggagccacctgtcacaggg	12	9	1	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	53565216	A	G	53565216	3	3	5	1	0	0	0	0	1	0	0	0	3954	333	12	4	1060	4	CSAD	12	53565216	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	39658826	53565216	80286679	23	331											
SMARCC2	6601	broad.mit.edu	37	chr12	56578007	56578007	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaacatgggaggcattgtTcttatcctcagtgactgttc	9	10	2	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	56578007	T	C	56578007	3	2	5	1	0	0	0	0	1	0	0	0	14874	1783	62	4	3319	4	SMARCC2	12	56578007	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	3012791	56578007	77273888	24	332											
NOC4L	79050	ucsc.edu	37	chr12	132632437	132632437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgcaggtgccccccgccTtttggaacaatgccttcacg	9	17	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	132632437	T	C	132632437	3	2	5	1	0	0	0	0	1	0	0	0	10594	1609	56	2	638	2	NOC4L	12	132632437	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	76054430	132632437	1219458	25	333											
SLC25A29	123096	ucsc.edu;mdanderson.org	37	chr14	100758955	100758955	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacgtaccgcccgccaacaGcagcttgggcaccagcaggc	12	16	0	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	100758955	G	A	100758955	2	1	5	1	0	0	0	0	0	0	0	1	14590	962	34	4		4	SLC25A29	14	100758955	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		100758955	6590585	26	334											
CSPG4	1464	mdanderson.org	37	chr15	75981944	75981944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacatttttcgtgcctgggCtcccgggatgtccagctcga	12	12	0	0	rs72732868	byfrequency	TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	75981944	C	T	75981944	3	4	5	1	0	0	0	0	1	0	0	0	3991	797	28	4	5538	4	CSPG4	15	75981944	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		75981944	26549448	27	335											
HYDIN	54768	broad.mit.edu	37	chr16	70884529	70884529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agttcacatctccttcctgcTttggtgtgaagaaaatatca	7	9	3	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	70884529	T	C	70884529	3	2	5	1	0	0	0	0	1	0	0	0	7528	1609	56	2	2944	2	HYDIN	16	70884529	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10		70884529	19470224	28	336											
RCVRN	5957	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr17	9808240	9808240	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgtgcagggcgatgacGtactccttgaagtccagggt	14	9	1	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	9808240	G	A	9808240	2	1	5	1	0	0	0	0	0	0	0	1	13278	1140	40	1		1	RCVRN	17	9808240	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		9808240	71386970	29	337											
ELAC2	60528	bcgsc.ca	37	chr17	12908367	12908367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatctggacattctaccaCcacaaaagcagcaccaggat	6	13	3	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	12908367	C	T	12908367	3	4	5	1	0	0	0	0	1	0	0	0	5086	507	18	3	1614	3	ELAC2	17	12908367	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	3100127	12908367	68286843	30	338											
SLC5A10	125206	hgsc.bcm.edu	37	chr17	18923480	18923480	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttacagattgagaaccttAcctggtggaccctggctcag	10	11	2	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	18923480	A	G	18923480	3	3	5	1	0	0	0	0	1	0	0	0	14760	391	14	2	1741	2	SLC5A10	17	18923480	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	6015113	18923480	62271730	31	339											
CDK12	51755	broad.mit.edu	37	chr17	37657501	37657501	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attttttttcgtctttatgtAggtgccttttaccttgtatt	6	6	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	37657501	A	G	37657501	5	3	5	1	0	0	0	0	0	0	1	0	3157	434	15	2	2440	2	CDK12	17	37657501	Splice_Site	SNP	A	TCGA-KL-8327-01A-11D-2310-10	18734021	37657501	43537709	32	340											
CDH2	1000	broad.mit.edu;mdanderson.org	37	chr18	25543442	25543442	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacaggcttgatggcatcaGgctccacagtgtcaggctgc	12	13	2	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	25543442	G	A	25543442	3	1	5	1	0	0	0	0	1	0	0	0	3134	1000	35	4	335	4	CDH2	18	25543442	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		25543442	52533806	33	341											
TCF4	6925	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	52937134	52937134	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtttgtaccactacgatGgaaagtggacatcggaggaa	13	6	0	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	52937134	G	A	52937134	3	1	5	1	0	0	0	0	1	0	0	0	15799	1348	47	4	1201	4	TCF4	18	52937134	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	27393692	52937134	25140114	34	342											
ALPK2	115701	hgsc.bcm.edu	37	chr18	56202992	56202992	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgttcagcctcctgcTtcatactgccttcttggctt	7	12	3	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	56202992	T	C	56202992	3	2	5	1	0	0	0	0	1	0	0	0	545	1609	56	2	2121	2	ALPK2	18	56202992	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	3265858	56202992	21874256	35	343											
ZNF439	90594	hgsc.bcm.edu	37	chr19	11979212	11979212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accgtatcaatgtaaggaatGtgggaaagctttcagatctg	11	6	3	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	11979212	G	A	11979212	3	1	5	1	0	0	0	0	1	0	0	0	18016	1377	48	4	1338	4	ZNF439	19	11979212	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10		11979212	47149771	36	344											
CACNA1A	773	bcgsc.ca	37	chr19	13366015	13366015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtactggaagctctgcttgTtctgcggcatgtgtcgggtc	15	9	2	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	13366015	T	C	13366015	3	2	5	1	0	0	0	0	1	0	0	0	2563	1725	60	2	3049	2	CACNA1A	19	13366015	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	1386803	13366015	45762968	37	345											
ZNF14	7561	bcgsc.ca	37	chr19	19822268	19822268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtttctctccagtgtgagAcctttcatgaattcgaacag	9	9	2	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	19822268	A	G	19822268	3	3	5	1	0	0	0	0	1	0	0	0	17833	275	10	2	110	2	ZNF14	19	19822268	Missense_Mutation	SNP	A	TCGA-KL-8327-01A-11D-2310-10	6456253	19822268	39306715	38	346											
LSM14A	26065	broad.mit.edu	37	chr19	34710315	34710315	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccaggtgctccttcagcTccaaggagagggcgtggggg	17	11	1	1	rs201741862		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	34710315	T	G	34710315	2	3	5	1	0	0	0	0	0	0	0	1	9126	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-KL-8327-01A-11D-2310-10	14888047	34710315	24418668	39	347											
SIPA1L3	23094	broad.mit.edu	37	chr19	38655328	38655329	+	Frame_Shift_Ins	INS	-	-	C													ccctggccaaggctccacggINScccgccaagccacacaagcc					novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	38655329	-	C	38655328	7	5	5	1	0	1	1	0	0	0	0	0	14429	1190	42	0	4040	0	SIPA1L3	19	38655328	Frame_Shift_Ins	INS	-	TCGA-KL-8327-01A-11D-2310-10	3945013	38655328	20473655	40	348											
DBP	1628	hgsc.bcm.edu	37	chr19	49134133	49134155	+	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	-													gcctggtatcgggacagcacGgcgcggtagtgggacagctc					novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		-	49134155	GGCGCGGTAGTGGGACAGCTCCT	-	49134133	7	5	5	1	0	1	0	1	0	0	0	0	4288	1103	39	0	42	0	DBP	19	49134133	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	TCGA-KL-8327-01A-11D-2310-10	10478805	49134133	9994850	41	349	7	2									
DBP	1628	bcgsc.ca	37	chr19	49134134	49134156	+	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	-													cctggtatcgggacagcacgGcgcggtagtgggacagctcc					novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	GGCGCGGTAGTGGGACAGCTCCT	GGCGCGGTAGTGGGACAGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		-	49134156	GGCGCGGTAGTGGGACAGCTCCT	-	49134134	7	5	5	1	0	1	0	1	0	0	0	0	4288	1203	42	0	43	0	DBP	19	49134134	Frame_Shift_Del	DEL	GGCGCGGTAGTGGGACAGCTCCT	TCGA-KL-8327-01A-11D-2310-10	1	49134134	9994849	42	350	7	2									
SHANK1	50944	hgsc.bcm.edu;mdanderson.org	37	chr19	51169881	51169881	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggctggtgggggtaacaGggtctcggagtcccccgctg	19	10	1	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	51169881	G	A	51169881	3	1	5	1	0	0	0	0	1	0	0	0	14362	1000	35	4	1157	4	SHANK1	19	51169881	Missense_Mutation	SNP	G	TCGA-KL-8327-01A-11D-2310-10	2035747	51169881	7959102	43	351											
HSPA12B	116835	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	3730674	3730674	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gagcagctgctgtgccgcatCttcggcgaggacttcatcgc	13	13	2	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		G	3730674	C	G	3730674	3	3	5	1	0	0	0	0	1	0	0	0	7465	903	32	5	1139	5	HSPA12B	20	3730674	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		3730674	59294846	44	352											
MAP1LC3A	84557	broad.mit.edu	37	chr20	33147658	33147658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagaaagacgaggacggcTtcctctatatggtctacgcc	12	10	2	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	33147658	T	C	33147658	3	2	5	1	0	0	0	0	1	0	0	0	9307	1609	56	2	392	2	MAP1LC3A	20	33147658	Missense_Mutation	SNP	T	TCGA-KL-8327-01A-11D-2310-10	29416984	33147658	29877862	45	353											
ASCC2	84164	mdanderson.org	37	chr22	30197985	30197985	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacctgtctctcccacctGtctaggttgcggtccagctg	9	17	2	0	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	30197985	G	A	30197985	2	1	5	1	0	0	0	0	0	0	0	1	1036	1368	48	4		4	ASCC2	22	30197985	Silent	SNP	G	TCGA-KL-8327-01A-11D-2310-10		30197985	21106581	46	354											
NHS	4810	broad.mit.edu	37	chrX	17745123	17745123	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttatagatctctatctaattCaagcaccgctacgggtacca	6	11	3	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		A	17745123	C	A	17745123	4	1	5	1	0	0	0	0	0	1	0	0	10490	838	29	5	2961	5	NHS	23	17745123	Nonsense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10		17745123	137525437	47	355											
APOO	79135	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	23874422	23874422	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaagatgctcctcaccttTtgaaagttctccttccacaa	4	12	2	2	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		C	23874422	T	C	23874422	2	2	5	1	0	0	0	0	0	0	0	1	815	1838	64	4		4	APOO	23	23874422	Silent	SNP	T	TCGA-KL-8327-01A-11D-2310-10	6129299	23874422	131396138	48	356											
RBMX	27316	mdanderson.org	37	chrX	135957699	135957699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgagagggcagcggttccCttcgaggtggacctccataa	13	11	0	1	novel		TCGA-KL-8327-01A-11D-2310-10	TCGA-KL-8327-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d72a7338-c144-4c62-a70e-2177a3b4b77e	15d4fbce-ae77-4500-ab53-a29ab6c75019		T	135957699	C	T	135957699	3	4	5	1	0	0	0	0	1	0	0	0	13243	681	24	4	659	4	RBMX	23	135957699	Missense_Mutation	SNP	C	TCGA-KL-8327-01A-11D-2310-10	112083277	135957699	19312861	49	357											
ZBTB17	7709	broad.mit.edu	37	chr1	16268583	16268583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgcagcacctgcccggCaggccacgtgccacctggcc	12	19	0	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	16268583	C	T	16268583	3	4	6	1	0	0	0	0	1	0	0	0	17632	710	25	4	122	4	ZBTB17	1	16268583	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10		16268583	232982038	1	358											
PEF1	553115	broad.mit.edu	37	chr1	32101118	32101118	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtcctgcagctcctggGcagccctgcaggaagagcaa	13	13	0	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	32101118	G	A	32101118	2	1	6	1	0	0	0	0	0	0	0	1	11797	1195	42	3		3	PEF1	1	32101118	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	15832535	32101118	217149503	2	359											
TAL1	6886	hgsc.bcm.edu	37	chr1	47685487	47685487	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccgtgtagctgtccgGgctggctgccccatccaggg	13	16	0	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	47685487	G	T	47685487	3	4	6	1	0	0	0	0	1	0	0	0	15642	1232	43	5	98	5	TAL1	1	47685487	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	15584369	47685487	201565134	3	360											
NFIA	4774	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	61869880	61869880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatccgctatcaccctcagGagacgctgaaagaatttgtc	8	13	2	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	61869880	G	A	61869880	3	1	6	1	0	0	0	0	1	0	0	0	10449	1175	41	3	1356	3	NFIA	1	61869880	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	14184393	61869880	187380741	4	361											
NBPF10	100132406	mdanderson.org	37	chr1	145304613	145304613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caactctcattggctcatccTctcatgttgaatgggaggat	9	10	3	1	rs113902225		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	145304613	T	C	145304613	3	2	6	1	0	0	0	0	1	0	0	0	10271	1551	54	2	1584	2	NBPF10	1	145304613	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	83434733	145304613	103946008	5	362											
IQGAP3	128239	ucsc.edu;bcgsc.ca	37	chr1	156531643	156531643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctaacctgtgccttctgcTctctgtctgagttcagctgc	10	13	4	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	156531643	T	C	156531643	3	2	6	1	0	0	0	0	1	0	0	0	7877	1551	54	2	3983	2	IQGAP3	1	156531643	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	11227030	156531643	92718978	6	363											
RASAL2	9462	bcgsc.ca	37	chr1	178426034	178426034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atttgaagaccccactgacaGgtatgaaagagagaatttga	10	6	0	7	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	178426034	G	T	178426034	3	4	6	1	0	0	0	0	1	0	0	0	13156	1014	35	5	2478	5	RASAL2	1	178426034	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	21894391	178426034	70824587	7	364											
RBBP5	5929	bcgsc.ca	37	chr1	205070729	205070729	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtaagatctcactcaccTccccttccgggcaaactcaa	6	15	3	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	205070729	T	C	205070729	3	2	6	1	0	0	0	0	1	0	0	0	13194	1565	54	2	1021	2	RBBP5	1	205070729	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	26644695	205070729	44179892	8	365											
C2orf43	60526	bcgsc.ca	37	chr2	20886772	20886772	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctcacagagtcgaatgTctccttctggaaaatccttc	6	11	3	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	20886772	T	C	20886772	3	2	6	1	0	0	0	0	1	0	0	0	2187	1667	58	2	112	2	C2orf43	2	20886772	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10		20886772	222312601	9	366											
MSH6	2956	mdanderson.org	37	chr2	48010558	48010558	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcccaggcccttggcgcgCtccgcgtcaccgcccaaggc	14	19	1	0	rs1042820	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	48010558	C	A	48010558	2	1	6	1	0	0	0	0	0	0	0	1	9952	784	28	5		5	MSH6	2	48010558	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	27123786	48010558	195188815	10	367											
EXOC6B	23233	ucsc.edu;bcgsc.ca	37	chr2	72725650	72725650	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgatttctaacagcatgtCaaaaagctgatttacaggga	8	7	3	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	72725650	C	T	72725650	3	4	6	1	0	0	0	0	1	0	0	0	5348	826	29	4	1205	4	EXOC6B	2	72725650	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	24715092	72725650	170473723	11	368											
IL1RL1	9173	ucsc.edu	37	chr2	102964403	102964403	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttttctttcttttgaatAgttgatcatcatagcatcta	4	7	6	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	102964403	A	G	102964403	5	3	6	1	0	0	0	0	0	0	1	0	7724	434	15	2	1016	2	IL1RL1	2	102964403	Splice_Site	SNP	A	TCGA-KL-8328-01A-11D-2310-10	30238753	102964403	140234970	12	369											
MBD5	55777	broad.mit.edu;mdanderson.org	37	chr2	149226187	149226187	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcctgcccagcccagcGtcatcaggttcccagatata	11	14	2	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	149226187	G	A	149226187	2	1	6	1	0	0	0	0	0	0	0	1	9424	1132	40	1		1	MBD5	2	149226187	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	46261784	149226187	93973186	13	370											
XIRP2	129446	broad.mit.edu	37	chr2	168100984	168100984	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaaacaaggcccattgacCagtttgatgaaagcattcat	8	8	1	4	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	168100984	C	T	168100984	4	4	6	1	0	0	0	0	0	1	0	0	17536	595	21	4	3112	4	XIRP2	2	168100984	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	18874797	168100984	75098389	14	371											
LRP2	4036	hgsc.bcm.edu;ucsc.edu	37	chr2	170129474	170129474	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgtatccagttggaagccGaatgtgcacttgcaacggaa	11	9	1	0	rs145709922	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	170129474	G	A	170129474	2	1	6	1	0	0	0	0	0	0	0	1	9028	1049	37	1		1	LRP2	2	170129474	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	2028490	170129474	73069899	15	372											
ABCA12	26154	ucsc.edu	37	chr2	215797365	215797365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgctggaagtgttaagacTccatctggtcatcttgtgag	11	7	3	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	215797365	T	C	215797365	3	2	6	1	0	0	0	0	1	0	0	0	30	1551	54	2	10	2	ABCA12	2	215797365	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	45667891	215797365	27402008	16	373											
KAT2B	8850	mdanderson.org	37	chr3	20169035	20169035	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtaacctcaaatgagcaAgtcaaggtaagggtaaaccc	10	9	2	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	20169035	A	G	20169035	2	3	6	1	0	0	0	0	0	0	0	1	8043	69	3	2		2	KAT2B	3	20169035	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10		20169035	177853395	17	374											
CCDC66	285331	broad.mit.edu;mdanderson.org	37	chr3	56649272	56649272	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcgcaaaagggacatgaCacttctagactgattaaaaa	9	7	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	56649272	C	T	56649272	2	4	6	1	0	0	0	0	0	0	0	1	2865	477	17	4		4	CCDC66	3	56649272	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	36480237	56649272	141373158	18	375											
ROBO2	6092	broad.mit.edu;mdanderson.org	37	chr3	77571941	77571941	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaggtatgacatcaaagaCgattacacactaagaattaa	6	8	1	3	rs201344460		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	77571941	C	T	77571941	2	4	6	1	0	0	0	0	0	0	0	1	13609	535	19	1		1	ROBO2	3	77571941	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	20922669	77571941	120450489	19	376											
CRYBG3	131544	broad.mit.edu	37	chr3	97596465	97596468	+	Frame_Shift_Del	DEL	AGAG	AGAG	-													tgaattttgatgaagatgacAgagaggcagctgatgaggaa					novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	AGAG	AGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		-	97596468	AGAG	-	97596465	7	5	6	1	0	1	0	1	0	0	0	0	3942	180	7	0	585	0	CRYBG3	3	97596465	Frame_Shift_Del	DEL	AGAG	TCGA-KL-8328-01A-11D-2310-10	20024524	97596465	100425965	20	377											
TM4SF4	7104	broad.mit.edu	37	chr3	149192812	149192812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaagagatctggtttttcGgaggaatattaggaagcggt	13	6	1	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	149192812	G	A	149192812	3	1	6	1	0	0	0	0	1	0	0	0	16074	1117	39	1	150	1	TM4SF4	3	149192812	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	51596347	149192812	48829618	21	378											
MUC4	4585	mdanderson.org	37	chr3	195512674	195512674	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtggatgctgaggaaAggctggtgacaggaagagag	17	6	0	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	195512674	A	G	195512674	3	3	6	1	0	0	0	0	1	0	0	0	10056	72	3	2		2	MUC4	3	195512674	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	46319862	195512674	2509756	22	379											
TACC3	10460	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	1729580	1729580	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctggcccaggtgccctggctGacctggactgctcaagctct	12	15	2	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	1729580	G	T	1729580	3	4	6	1	0	0	0	0	1	0	0	0	15604	1290	45	5	461	5	TACC3	4	1729580	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10		1729580	189424696	23	380											
PKD2	5311	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	88986631	88986631	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agttaaactttgacgaacttCgacaagatctcaaagggtga	9	7	1	3	rs121918040		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	88986631	C	T	88986631	4	4	6	1	0	0	0	0	0	1	0	0	12046	876	31	1	2266	1	PKD2	4	88986631	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	87257051	88986631	102167645	24	381											
GRID2	2895	hgsc.bcm.edu;mdanderson.org	37	chr4	94411803	94411803	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctacaggcggggaagtcccGtacacgactctggctacccg	12	14	2	0	rs188016557	by1000genomes	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	94411803	G	A	94411803	2	1	6	1	0	0	0	0	0	0	0	1	6830	1132	40	1		1	GRID2	4	94411803	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	5425172	94411803	96742473	25	382											
FRG1	2483	mdanderson.org	37	chr4	190878552	190878552	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgttatttgtttcacttaGgggaaaatggctttgttggc	11	4	1	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	190878552	G	A	190878552	5	1	6	1	0	0	0	0	0	0	1	0	6098	1014	35	4	454	4	FRG1	4	190878552	Splice_Site	SNP	G	TCGA-KL-8328-01A-11D-2310-10	96466749	190878552	275724	26	383											
PROP1	5626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	177421251	177421251	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtggcggcgccgggagtgCgggcggcccctctgtcctcc	18	16	1	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	177421251	C	T	177421251	2	4	6	1	0	0	0	0	0	0	0	1	12646	755	27	1		1	PROP1	5	177421251	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10		177421251	3494009	27	384											
ZNF354C	30832	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	178506374	178506374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctttagccagtgttcaaCcctcactgtacatcagagaa	7	12	3	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	178506374	C	A	178506374	3	1	6	1	0	0	0	0	1	0	0	0	17971	507	18	5	955	5	ZNF354C	5	178506374	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	1085123	178506374	2408886	28	385											
HLA-C	3107	mdanderson.org	37	chr6	31238929	31238929	+	Silent	SNP	C	C	G													gtgccctccaggtaggctctCagctgctccgccgcacgggc					rs71552047	alternate_allele	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	31238929	C	G	31238929	2	3	6	1	0	0	0	0	0	0	0	1	7255	813	29	5		5	HLA-C	6	31238929	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10		31238929	139876138	29	386	8	2									
HLA-C	3107	mdanderson.org	37	chr6	31238931	31238931	+	Missense_Mutation	SNP	G	G	C													gccctccaggtaggctctcaGctgctccgccgcacgggccg					rs697743	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	31238931	G	C	31238931	3	2	6	1	0	0	0	0	1	0	0	0	7255	962	34	5	586	5	HLA-C	6	31238931	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	2	31238931	139876136	30	387	8	2									
DNAH8	1769	ucsc.edu	37	chr6	38690885	38690885	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcagtgatttcggaagtGctgtccttgccgtcttcccg	11	12	2	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	38690885	G	A	38690885	2	1	6	1	0	0	0	0	0	0	0	1	4644	1334	46	4		4	DNAH8	6	38690885	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	7451954	38690885	132424182	31	388											
BCLAF1	9774	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr6	136599231	136599231	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggactatgctgaatggaaTgtgaatgctgagaaggagta	14	4	0	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	136599231	T	A	136599231	3	1	6	1	0	0	0	0	1	0	0	0	1387	1464	51	5	2014	5	BCLAF1	6	136599231	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	97908346	136599231	34515836	32	389											
AKAP12	9590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	151673069	151673069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccccgtagccgactttgaCgcaccaggcacaacccagaa	8	17	0	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	151673069	C	T	151673069	2	4	6	1	0	0	0	0	0	0	0	1	448	535	19	1		1	AKAP12	6	151673069	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	15073838	151673069	19441998	33	390											
FNDC1	84624	hgsc.bcm.edu;bcgsc.ca	37	chr6	159660825	159660825	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgcacgaccaccaggcGtccaacaaccacagtccgaa	8	19	0	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	159660825	G	A	159660825	3	1	6	1	0	0	0	0	1	0	0	0	6017	1145	40	1	4511	1	FNDC1	6	159660825	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	7987756	159660825	11454242	34	391											
MLXIPL	51085	hgsc.bcm.edu;ucsc.edu	37	chr7	73020310	73020310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagagtgtctgagatgtcGgacaaaaagcaattgaggtc	13	5	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	73020310	G	A	73020310	2	1	6	1	0	0	0	0	0	0	0	1	9714	1103	39	1		1	MLXIPL	7	73020310	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10		73020310	86118353	35	392											
NPTX2	4885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	98254299	98254299	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cactccgcacaaactacctaTacggcaagatcaagaagacg	7	13	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	98254299	T	G	98254299	3	3	6	1	0	0	0	0	1	0	0	0	10682	1406	49	5	719	5	NPTX2	7	98254299	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	25233989	98254299	60884364	36	393											
CNTNAP2	26047	hgsc.bcm.edu;ucsc.edu	37	chr7	146829390	146829390	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtgcctgtctttttcaaCgctacaagttacctggaggt	10	10	2	0	rs78543192	bycluster;byfrequency;by1000genomes	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	146829390	C	T	146829390	2	4	6	1	0	0	0	0	0	0	0	1	3676	535	19	1		1	CNTNAP2	7	146829390	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	48575091	146829390	12309273	37	394											
CHPF2	54480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	150932432	150932432	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggatgacacatatgtgCaggccccccgcctggcagcc	12	15	0	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	150932432	C	T	150932432	4	4	6	1	0	0	0	0	0	1	0	0	3398	711	25	4	568	4	CHPF2	7	150932432	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	4103042	150932432	8206231	38	395											
MTBP	27085	ucsc.edu;bcgsc.ca	37	chr8	121467780	121467780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacatttgagagaatggtAttcagcaaagatcactatag	8	5	2	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	121467780	A	G	121467780	3	3	6	1	0	0	0	0	1	0	0	0	9990	449	16	4	612	4	MTBP	8	121467780	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		121467780	24896242	39	396											
SMARCA2	6595	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	2056812	2056812	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctggagaagcagcagaagatTgagcaggagaggaaacgccg	16	7	0	5	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	2056812	T	A	2056812	2	1	6	1	0	0	0	0	0	0	0	1	14867	1800	63	5		5	SMARCA2	9	2056812	Silent	SNP	T	TCGA-KL-8328-01A-11D-2310-10		2056812	139156619	40	397											
OR13C2	392376	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	107367649	107367649	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gggaaatggtctttctttctGaaaggaagctcactagcgtg	12	7	4	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	107367649	G	C	107367649	4	2	6	1	0	0	0	0	0	1	0	0	11013	1294	45	5	699	5	OR13C2	9	107367649	Nonsense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	105310837	107367649	33845782	41	398											
MUSK	4593	broad.mit.edu;mdanderson.org	37	chr9	113563201	113563201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcctgcagacagacccaGtttcaccagtattcaccgaa	8	14	2	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	113563201	G	A	113563201	3	1	6	1	0	0	0	0	1	0	0	0	10067	1029	36	4	2633	4	MUSK	9	113563201	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	6195552	113563201	27650230	42	399											
PI4K2A	55361	broad.mit.edu	37	chr10	99400542	99400542	+	Frame_Shift_Del	DEL	C	C	-													tgtcccccgagcgggcccaaCccccggactacaccttcccg					novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		-	99400542	C	-	99400542	7	5	6	1	0	1	0	1	0	0	0	0	11951	507	18	0	45	0	PI4K2A	10	99400542	Frame_Shift_Del	DEL	C	TCGA-KL-8328-01A-11D-2310-10		99400542	36134205	43	400											
C10orf120	399814	hgsc.bcm.edu;bcgsc.ca	37	chr10	124457697	124457697	+	Missense_Mutation	SNP	T	T	G													atgaggagcgtgtaaaccttTcaatgtagggtaaaggctga					novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	124457697	T	G	124457697	3	3	6	1	0	0	0	0	1	0	0	0	1600	1783	62	5	451	5	C10orf120	10	124457697	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	25057155	124457697	11077050	44	401	9	2									
C10orf120	399814	broad.mit.edu;bcgsc.ca	37	chr10	124457698	124457698	+	Nonsense_Mutation	SNP	C	C	A													tgaggagcgtgtaaacctttCaatgtagggtaaaggctgat					novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	124457698	C	A	124457698	4	1	6	1	0	0	0	0	0	1	0	0	1600	835	29	5	452	5	C10orf120	10	124457698	Nonsense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	1	124457698	11077049	45	402	9	2									
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	chr11	46515749	46515749	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcctggatctgtcaccaTtgtccctgaaaaaaataaaa	8	9	2	1	rs147544015		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	46515749	T	C	46515749	3	2	6	1	0	0	0	0	1	0	0	0	565	1493	52	4	1587	4	AMBRA1	11	46515749	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10		46515749	88490767	46	403											
RPS6KA4	8986	mdanderson.org	37	chr11	64127744	64127744	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcagcgcgccaagacgcaAgagcacacgcgcaccgagcg	14	15	0	2	rs521950	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	64127744	A	G	64127744	2	3	6	1	0	0	0	0	0	0	0	1	13748	69	3	2		2	RPS6KA4	11	64127744	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10	17611995	64127744	70878772	47	404											
RAB1B	81876	ucsc.edu	37	chr11	66043329	66043329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agattgaccgctatgccagcGagaacgtcaataagctcctg	10	11	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	66043329	G	A	66043329	3	1	6	1	0	0	0	0	1	0	0	0	12998	1059	37	1	352	1	RAB1B	11	66043329	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	1915585	66043329	68963187	48	405											
DSCAML1	57453	broad.mit.edu	37	chr11	117392079	117392079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaccgtgctgccaatgcCggtcttcagcttctttggtg	12	11	3	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	117392079	C	T	117392079	3	4	6	1	0	0	0	0	1	0	0	0	4806	652	23	1	5294	1	DSCAML1	11	117392079	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	51348750	117392079	17614437	49	406											
CHD4	1108	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	6701640	6701640	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acacatcggctttgagccgcCgcaacatgtgcggccccagc	11	16	0	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	6701640	C	A	6701640	3	1	6	1	0	0	0	0	1	0	0	0	3356	652	23	5	2959	5	CHD4	12	6701640	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10		6701640	127150255	50	407											
DUSP16	80824	broad.mit.edu	37	chr12	12630273	12630273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcagtggagataaaagggAcctctgggcggtgccactgc	15	9	1	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	12630273	A	G	12630273	3	3	6	1	0	0	0	0	1	0	0	0	4853	275	10	2	509	2	DUSP16	12	12630273	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	5928633	12630273	121221622	51	408											
ANO6	196527	mdanderson.org	37	chr12	45725162	45725162	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctagtatatgaggatgaaAgcagaaaagagaccaataaa	9	4	1	4	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	45725162	A	G	45725162	3	3	6	1	0	0	0	0	1	0	0	0	701	72	3	2	265	2	ANO6	12	45725162	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	33094889	45725162	88126733	52	409											
GALNT6	11226	broad.mit.edu	37	chr12	51752937	51752937	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttgggccatctttgctgcCtgcagatttctcctatagaa	8	11	3	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	51752937	C	G	51752937	3	3	6	1	0	0	0	0	1	0	0	0	6271	680	24	5	541	5	GALNT6	12	51752937	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	6027775	51752937	82098958	53	410											
E2F7	144455	broad.mit.edu	37	chr12	77419489	77419490	+	Frame_Shift_Del	DEL	TT	TT	-													cagaagggagtgtggacgacTttggattaaccacagctgtg					novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		-	77419490	TT	-	77419489	7	5	6	1	0	1	0	1	0	0	0	0	4909	1609	56	0	329	0	E2F7	12	77419489	Frame_Shift_Del	DEL	TT	TCGA-KL-8328-01A-11D-2310-10	25666552	77419489	56432406	54	411											
IKBIP	121457	mdanderson.org	37	chr12	99020139	99020139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taacttttcaattgcctttgTatcagagcctagctgctcct	6	11	2	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	99020139	T	C	99020139	3	2	6	1	0	0	0	0	1	0	0	0	7670	1638	57	2	1194	2	IKBIP	12	99020139	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	21600650	99020139	34831756	55	412											
FREM2	341640	broad.mit.edu	37	chr13	39446906	39446906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctagtgcagtcctatgtgAcccttcgagtccctctgtat	8	13	1	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	39446906	A	G	39446906	3	3	6	1	0	0	0	0	1	0	0	0	6097	275	10	2	8077	2	FREM2	13	39446906	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		39446906	75722972	56	413											
POTEG	404785	mdanderson.org	37	chr14	19553653	19553653	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggggagcagcaagagcaaCgtgggcacttctggagacca	16	9	1	2	rs201360940		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	19553653	C	T	19553653	2	4	6	1	0	0	0	0	0	0	0	1	12346	535	19	1		1	POTEG	14	19553653	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10		19553653	87795887	57	414											
PNP	4860	broad.mit.edu;bcgsc.ca	37	chr14	20944680	20944680	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagaagtcttagcagctGgcaaacaagctgcacagaaa	10	8	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	20944680	G	A	20944680	3	1	6	1	0	0	0	0	1	0	0	0	12243	1348	47	4	812	4	PNP	14	20944680	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	1391027	20944680	86404860	58	415											
ISM2	145501	mdanderson.org	37	chr14	77942316	77942316	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctgcggccctggtgctcGtcctgtaggctcacagggct	14	13	1	0	rs3742732	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	77942316	G	A	77942316	2	1	6	1	0	0	0	0	0	0	0	1	7922	1136	40	1		1	ISM2	14	77942316	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	56997636	77942316	29407224	59	416											
SPATA7	55812	bcgsc.ca	37	chr14	88892586	88892586	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgttcttagccctcaggcgAaccgcaaattgaggatgaca	10	10	2	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	88892586	A	G	88892586	3	3	6	1	0	0	0	0	1	0	0	0	15114	246	9	4	405	4	SPATA7	14	88892586	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	10950270	88892586	18456954	60	417											
C14orf142	84520	broad.mit.edu;mdanderson.org	37	chr14	93670052	93670052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttaagacggtgtttttggcCgttttgcagatggtccatcg	13	7	0	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	93670052	C	T	93670052	3	4	6	1	0	0	0	0	1	0	0	0	1759	652	23	1	22	1	C14orf142	14	93670052	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	4777466	93670052	13679488	61	418											
AHNAK2	113146	mdanderson.org	37	chr14	105418155	105418155	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gcggaagggggctgaatgctGaggtcagtggtcttgaggtc	19	6	2	3	rs141600524	by1000genomes	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	105418155	G	C	105418155	2	2	6	1	0	0	0	0	0	0	0	1	415	1277	45	5		5	AHNAK2	14	105418155	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	11748103	105418155	1931385	62	419											
MYO1E	4643	mdanderson.org	37	chr15	59466112	59466112	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgttcaataagaggtctgAggctacaattcccaagaggg	11	8	2	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	59466112	A	G	59466112	3	3	6	1	0	0	0	0	1	0	0	0	10150	304	11	2	1191	2	MYO1E	15	59466112	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		59466112	43065280	63	420											
USP3	9960	broad.mit.edu;mdanderson.org	37	chr15	63866525	63866525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctctctccttttaagaccTttcattagatattccaagtc	3	12	3	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	63866525	T	C	63866525	3	2	6	1	0	0	0	0	1	0	0	0	17166	1609	56	2	1061	2	USP3	15	63866525	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	4400413	63866525	38664867	64	421											
ANP32A	8125	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	69079816	69079816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttagatgcgtgaggttcGgacacttttctgccaatact	9	8	1	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		A	69079816	G	A	69079816	3	1	6	1	0	0	0	0	1	0	0	0	705	1116	39	1	506	1	ANP32A	15	69079816	Missense_Mutation	SNP	G	TCGA-KL-8328-01A-11D-2310-10	5213291	69079816	33451576	65	422											
KIAA1199	57214	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr15	81216982	81216982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggcatgatcatagacaaCggagtcaaaaccaccgaggc	11	11	2	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	81216982	C	T	81216982	2	4	6	1	0	0	0	0	0	0	0	1	8274	535	19	1		1	KIAA1199	15	81216982	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	12137166	81216982	21314410	66	423											
MEF2A	4205	hgsc.bcm.edu	37	chr15	100250958	100250958	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taggacaagcagccctcagcTctcttgtgtgagtaactaga	10	10	2	2	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	100250958	T	C	100250958	3	2	6	1	0	0	0	0	1	0	0	0	9532	1551	54	2	1305	2	MEF2A	15	100250958	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	19033976	100250958	2280434	67	424											
LRRK1	79705	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	101606197	101606197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcatccccaccccgccaggCtgccaggtccccctcaagcc	7	23	2	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	101606197	C	T	101606197	3	4	6	1	0	0	0	0	1	0	0	0	9104	797	28	4	5677	4	LRRK1	15	101606197	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	1355239	101606197	925195	68	425											
NPRL3	8131	bcgsc.ca	37	chr16	169144	169144	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgccccagagcatgctgtAgcagtgttgggtgcccaaca	12	13	0	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	169144	A	G	169144	3	3	6	1	0	0	0	0	1	0	0	0	10677	420	15	2	1453	2	NPRL3	16	169144	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		169144	90185609	69	426											
CACNA1H	8912	mdanderson.org	37	chr16	1250389	1250389	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggccgccgcgagctgcgcAtgccctgcaccctgggctgg	15	18	0	0	rs36117280	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	1250389	A	G	1250389	3	3	6	1	0	0	0	0	1	0	0	0	2570	217	8	4	959	4	CACNA1H	16	1250389	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	1081245	1250389	89104364	70	427											
C16orf3	750	hgsc.bcm.edu	37	chr16	90095603	90095604	+	In_Frame_Ins	INS	-	-	GGCTGCGGGGCA													acggggcaggctatggggcaINSgcctacggggcaggctacgg					novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		GGCTGCGGGGCA	90095604	-	GGCTGCGGGGCA	90095603	7	5	6	1	0	1	1	0	0	0	0	0	1825	188	7	0	209	0	C16orf3	16	90095603	In_Frame_Ins	INS	-	TCGA-KL-8328-01A-11D-2310-10	88845214	90095603	259150	71	428											
OR1A2	26189	bcgsc.ca	37	chr17	3101590	3101590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgatgggcatgtatttcCgccctctgaccagttacagc	9	13	1	1	rs2469791	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	3101590	C	T	3101590	3	4	6	1	0	0	0	0	1	0	0	0	11029	652	23	1	780	1	OR1A2	17	3101590	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10		3101590	78093620	72	429											
SDK2	54549	ucsc.edu	37	chr17	71468293	71468293	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgctgcagcagggcccccaTtcggttccgcacgatgcaac	11	17	0	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	71468293	T	C	71468293	3	2	6	1	0	0	0	0	1	0	0	0	14066	1493	52	4	6401	4	SDK2	17	71468293	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	68366703	71468293	9726917	73	430											
CNDP1	84735	broad.mit.edu;mdanderson.org	37	chr18	72234590	72234590	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtggactacattgtaatTtcagataacctgtggatcag	11	6	2	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	72234590	T	C	72234590	2	2	6	1	0	0	0	0	0	0	0	1	3622	1829	64	4		4	CNDP1	18	72234590	Silent	SNP	T	TCGA-KL-8328-01A-11D-2310-10		72234590	5842658	74	431											
RFX2	5990	broad.mit.edu;mdanderson.org	37	chr19	6004252	6004252	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaagtcactcatggcaTttgtcaaccagccttccaag	10	11	3	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	6004252	T	C	6004252	3	2	6	1	0	0	0	0	1	0	0	0	13355	1493	52	4	735	4	RFX2	19	6004252	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10		6004252	53124731	75	432											
ZNF763	284390	mdanderson.org	37	chr19	12087921	12087921	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggctttgctggatatttcGcagaggaaactctacaggga	13	7	1	1	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	12087921	G	C	12087921	2	2	6	1	0	0	0	0	0	0	0	1	18241	1074	38	5		5	ZNF763	19	12087921	Silent	SNP	G	TCGA-KL-8328-01A-11D-2310-10	6083669	12087921	47041062	76	433											
LSM14A	26065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	34712450	34712450	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaagaaagaagattaaAtgctgaaacatttggaatcc	10	5	0	5	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	34712450	A	G	34712450	3	3	6	1	0	0	0	0	1	0	0	0	9126	101	4	4	1209	4	LSM14A	19	34712450	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10	22624529	34712450	24416533	77	434											
IRGC	56269	mdanderson.org	37	chr19	44223180	44223180	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctggccgctgagatccTgtgccagggcaagaagttct	13	13	1	2	rs142490244		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	44223180	T	C	44223180	3	2	6	1	0	0	0	0	1	0	0	0	7899	1580	55	2	472	2	IRGC	19	44223180	Missense_Mutation	SNP	T	TCGA-KL-8328-01A-11D-2310-10	9510730	44223180	14905803	78	435											
ZNF235	9310	mdanderson.org	37	chr19	44791618	44791618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attctttcccacattcctcaCatttaaatggtttctctcca	2	13	3	0	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	44791618	C	T	44791618	3	4	6	1	0	0	0	0	1	0	0	0	17893	478	17	4	250	4	ZNF235	19	44791618	Missense_Mutation	SNP	C	TCGA-KL-8328-01A-11D-2310-10	568438	44791618	14337365	79	436											
KLC3	147700	mdanderson.org	37	chr19	45849909	45849909	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgtgtggctgcgggaggaActggaggagacgcagcggcg	20	8	0	1	rs9749618	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	45849909	A	G	45849909	2	3	6	1	0	0	0	0	0	0	0	1	8396	40	2	2		2	KLC3	19	45849909	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10	1058291	45849909	13279074	80	437											
PPP5C	5536	mdanderson.org	37	chr19	46878881	46878881	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtcaaggtgaagccccaTgacaaggatgccaaaatgaa	12	8	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		C	46878881	T	C	46878881	2	2	6	1	0	0	0	0	0	0	0	1	12491	1461	51	4		4	PPP5C	19	46878881	Silent	SNP	T	TCGA-KL-8328-01A-11D-2310-10	1028972	46878881	12250102	81	438											
LILRA2	11027	mdanderson.org	37	chr19	55086955	55086955	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggggccagtacagatgctaCagtgcacacaacctctcctc	10	14	1	1	rs145792151	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		T	55086955	C	T	55086955	2	4	6	1	0	0	0	0	0	0	0	1	8848	489	17	4		4	LILRA2	19	55086955	Silent	SNP	C	TCGA-KL-8328-01A-11D-2310-10	8208074	55086955	4042028	82	439											
RFPL3	10738	mdanderson.org	37	chr22	32756407	32756407	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttacctgtggccgccactActgggaggtggacgtgggaa	15	10	0	0	rs61747109	byfrequency	TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	32756407	A	G	32756407	3	3	6	1	0	0	0	0	1	0	0	0	13347	391	14	2	548	2	RFPL3	22	32756407	Missense_Mutation	SNP	A	TCGA-KL-8328-01A-11D-2310-10		32756407	18548159	83	440											
TMEM27	57393	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	15657840	15657840	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaattccagagtttggtcAtttagaaagaaggcattgtt	9	4	1	3	novel		TCGA-KL-8328-01A-11D-2310-10	TCGA-KL-8328-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ccd028d-e7e0-4f77-a512-f658a31819a4	f468e484-9121-46a5-90cf-abe4cf4e7335		G	15657840	A	G	15657840	2	3	6	1	0	0	0	0	0	0	0	1	16256	214	8	4		4	TMEM27	23	15657840	Silent	SNP	A	TCGA-KL-8328-01A-11D-2310-10		15657840	139612720	84	441											
KIF1B	23095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	10364647	10364647	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtttgtgacacctccgcGgatgaggagacagttctcag	12	11	1	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	10364647	G	T	10364647	3	4	7	1	0	0	0	0	1	0	0	0	8345	1116	39	5	3482	5	KIF1B	1	10364647	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		10364647	238885974	1	442											
NBPF3	84224	mdanderson.org	37	chr1	21806667	21806667	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccagccctacagaagtgaCttttactcattgcaggaaca	8	11	1	2	rs12043777	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	21806667	C	G	21806667	2	3	7	1	0	0	0	0	0	0	0	1	10276	564	20	5		5	NBPF3	1	21806667	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	11442020	21806667	227443954	2	443											
KIAA1614	57710	ucsc.edu	37	chr1	180905800	180905800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccgcccctggagaacagcAgagatggtaaggggctgccg	16	11	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	180905800	A	G	180905800	3	3	7	1	0	0	0	0	1	0	0	0	8309	180	7	2	2773	2	KIAA1614	1	180905800	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	159099133	180905800	68344821	3	444											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	11955246	11955246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttctctactgttctgcccGtgccatcgggatggcggaca	11	12	2	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	11955246	G	A	11955246	3	1	7	1	0	0	0	0	1	0	0	0	8990	1145	40	1	2236	1	LPIN1	2	11955246	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		11955246	231244127	4	445											
RBMS3	27303	broad.mit.edu	37	chr3	29925685	29925685	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacctatgaccccacagcTgccatacagaatgggtaagt	9	11	0	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	29925685	T	G	29925685	2	3	7	1	0	0	0	0	0	0	0	1	13242	1567	55	5		5	RBMS3	3	29925685	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10		29925685	168096745	5	446											
OR5H15	403274	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	97888186	97888186	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tattcagcattgtgactattCttatatcttacacatttgtt	4	7	3	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	97888186	C	G	97888186	3	3	7	1	0	0	0	0	1	0	0	0	11240	913	32	5	645	5	OR5H15	3	97888186	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	67962501	97888186	100134244	6	447											
A4GNT	51146	mdanderson.org	37	chr3	137850003	137850003	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggacttgaaagaaggcaaAcagaagaggcagctggactt	14	6	0	4	rs2724691	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	137850003	A	G	137850003	2	3	7	1	0	0	0	0	0	0	0	1	7	41	2	2		2	A4GNT	3	137850003	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	39961817	137850003	60172427	7	448											
PRR23A	729627	hgsc.bcm.edu;mdanderson.org	37	chr3	138724463	138724463	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaggcggaattccgggtcGaagaaggggcctggagagtg	19	6	0	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	138724463	G	A	138724463	2	1	7	1	0	0	0	0	0	0	0	1	12683	1049	37	1		1	PRR23A	3	138724463	Silent	SNP	G	TCGA-KL-8329-01A-11D-2310-10	874460	138724463	59297967	8	449											
MUC4	4585	mdanderson.org	37	chr3	195506530	195506530	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gacctgtggatgctgaggaaCggctggtgacaggaagagag	18	6	0	3	rs201186756		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	195506530	C	G	195506530	3	3	7	1	0	0	0	0	1	0	0	0	10056	536	19	5		5	MUC4	3	195506530	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	56782067	195506530	2515900	9	450											
MUC4	4585	mdanderson.org	37	chr3	195510900	195510900	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggatgctgagggagtGtcggtgacaggtagaggggt	20	5	0	3	rs201192572	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	195510900	G	T	195510900	3	4	7	1	0	0	0	0	1	0	0	0	10056	1368	48	5		5	MUC4	3	195510900	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	4370	195510900	2511530	10	451											
PAK2	5062	mdanderson.org	37	chr3	196529978	196529978	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggctgtgctggatgtcCtaaagttctacgactccaac	9	12	2	0	rs79726945		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	196529978	C	T	196529978	2	4	7	1	0	0	0	0	0	0	0	1	11480	680	24	4		4	PAK2	3	196529978	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	1019078	196529978	1492452	11	452											
NOP14	8602	broad.mit.edu	37	chr4	2952919	2952919	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgacatatgttttggTttcttaacattttcatcctc	5	9	3	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	2952919	T	C	2952919	2	2	7	1	0	0	0	0	0	0	0	1	10615	1722	60	2		2	NOP14	4	2952919	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10		2952919	188201357	12	453											
UGT2B28	54490	broad.mit.edu	37	chr4	70146674	70146674	+	Frame_Shift_Del	DEL	T	T	-													gacatcatttttgcagatgcTttttttccttgtggtgagct					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	70146674	T	-	70146674	7	5	7	1	0	1	0	1	0	0	0	0	17066	1596	56	0	458	0	UGT2B28	4	70146674	Frame_Shift_Del	DEL	T	TCGA-KL-8329-01A-11D-2310-10	67193755	70146674	121007602	13	454											
CNOT6L	246175	mdanderson.org	37	chr4	78650048	78650048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatctgcacatagcaccagCgggatggaattaggatctgc	12	9	2	1	rs199946358		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	78650048	C	T	78650048	2	4	7	1	0	0	0	0	0	0	0	1	3652	755	27	1		1	CNOT6L	4	78650048	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	8503374	78650048	112504228	14	455											
HERC5	51191	mdanderson.org	37	chr4	89380519	89380519	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcattaaattaggaaaaaAcatgaagatacattccgtgg	8	5	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	89380519	A	G	89380519	3	3	7	1	0	0	0	0	1	0	0	0	7119	43	2	2	293	2	HERC5	4	89380519	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	10730471	89380519	101773757	15	456											
DCHS2	54798	broad.mit.edu;ucsc.edu	37	chr4	155219313	155219313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagttgtctggtttgtaggCgactcgggggaaagaaacac	14	7	1	1	rs142512414		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	155219313	C	T	155219313	2	4	7	1	0	0	0	0	0	0	0	1	4320	755	27	1		1	DCHS2	4	155219313	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	65838794	155219313	35934963	16	457											
SDHA	6389	mdanderson.org	37	chr5	236628	236628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcctcggtacatggtgCcaaccgcctcggggcaaact	12	14	0	0	rs201139275	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	236628	C	T	236628	3	4	7	1	0	0	0	0	1	0	0	0	14060	739	26	3	1384	3	SDHA	5	236628	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10		236628	180678632	17	458											
SCAMP1	9522	broad.mit.edu;mdanderson.org	37	chr5	77745782	77745782	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagttcatttagattctttGtattcttcttcgtctatatt	4	7	5	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	77745782	G	T	77745782	3	4	7	1	0	0	0	0	1	0	0	0	13966	1377	48	5	684	5	SCAMP1	5	77745782	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	77509154	77745782	103169478	18	459											
TTC37	9652	broad.mit.edu	37	chr5	94830430	94830430	+	Frame_Shift_Del	DEL	T	T	-													gaatggtctttagtgcagtaTttttttcatcttctgctgaa					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	94830430	T	-	94830430	7	5	7	1	0	1	0	1	0	0	0	0	16811	1493	52	0	968	0	TTC37	5	94830430	Frame_Shift_Del	DEL	T	TCGA-KL-8329-01A-11D-2310-10	17084648	94830430	86084830	19	460											
FAM13B	51306	broad.mit.edu	37	chr5	137278834	137278834	+	Frame_Shift_Del	DEL	A	A	-													aggattaccttgatttcttcAaaaaaatgtgcagtttctcc					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	137278834	A	-	137278834	7	5	7	1	0	1	0	1	0	0	0	0	5496	127	5	0	417	0	FAM13B	5	137278834	Frame_Shift_Del	DEL	A	TCGA-KL-8329-01A-11D-2310-10	42448404	137278834	43636426	20	461											
PCDHA8	56140	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	140221090	140221090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggcggagctggtgccgCgcctgttccgggtggcgtcc	18	13	0	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	140221090	C	T	140221090	3	4	7	1	0	0	0	0	1	0	0	0	11609	768	27	1	186	1	PCDHA8	5	140221090	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	2942256	140221090	40694170	21	462											
LARP1	23367	bcgsc.ca	37	chr5	154173805	154173820	+	Frame_Shift_Del	DEL	ACTACATCAAGCGCCA	ACTACATCAAGCGCCA	-													gatcaggaactgctcaaagaCtacatcaagcgccagatgtg					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	ACTACATCAAGCGCCA	ACTACATCAAGCGCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	154173820	ACTACATCAAGCGCCA	-	154173805	7	5	7	1	0	1	0	1	0	0	0	0	8690	564	20	0	1010	0	LARP1	5	154173805	Frame_Shift_Del	DEL	ACTACATCAAGCGCCA	TCGA-KL-8329-01A-11D-2310-10	13952715	154173805	26741455	22	463											
HLA-B	3106	mdanderson.org	37	chr6	31324911	31324911	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccgagagcagcaggaggaCggttcggggcgccatgacca	17	12	0	2	rs1050462	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	31324911	C	G	31324911	3	3	7	1	0	0	0	0	1	0	0	0	7254	536	19	5	1091	5	HLA-B	6	31324911	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10		31324911	139790156	23	464			1	3		2	2	21	N	C_A	6.266616e-05
HLA-B	3106	bcgsc.ca	37	chr6	31324931	31324931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggttcggggcgccatgaccAgcatctcggcgtctgaggag	16	12	2	2	rs151341075	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	31324931	A	C	31324931	3	2	7	1	0	0	0	0	1	0	0	0	7254	188	7	5	1111	5	HLA-B	6	31324931	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	20	31324931	139790136	24	465			1	3		2	2	21	N	C_A	6.266616e-05
HLA-DRB5	3127	mdanderson.org	37	chr6	32497931	32497931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccagccaaagccagtgggGagctcagcaccatcagtgtc	11	15	2	0	rs147565130	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	32497931	G	A	32497931	3	1	7	1	0	0	0	0	1	0	0	0	7267	1174	41	3	753	3	HLA-DRB5	6	32497931	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	1173000	32497931	138617136	25	466											
CDKN1A	1026	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	36652171	36652171	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aggcaggcggcctggcacctCacctgctctgctgcagggga	15	14	2	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	36652171	C	A	36652171	4	1	7	1	0	0	0	0	0	1	0	0	3187	838	29	5	295	5	CDKN1A	6	36652171	Nonsense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	4154240	36652171	134462896	26	467											
AKAP12	9590	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	151671482	151671482	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accgagagcacagcctctgaAatgcaagaagaaatgaaagg	11	8	1	5	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	151671482	A	G	151671482	2	3	7	1	0	0	0	0	0	0	0	1	448	11	1	4		4	AKAP12	6	151671482	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	115019311	151671482	19443585	27	468											
FAM120B	84498	broad.mit.edu;hgsc.bcm.edu	37	chr6	170627576	170627576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatccaggcgagaagttccCgtgtatacagattctgaacc	10	10	1	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	170627576	C	T	170627576	2	4	7	1	0	0	0	0	0	0	0	1	5460	639	23	1		1	FAM120B	6	170627576	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	18956094	170627576	487491	28	469											
HIBADH	11112	broad.mit.edu	37	chr7	27672041	27672041	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attctgtcagctttttcagcAacatctgctggggaagatac	9	9	4	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	27672041	A	G	27672041	2	3	7	1	0	0	0	0	0	0	0	1	7157	117	5	4		4	HIBADH	7	27672041	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10		27672041	131466622	29	470											
KRIT1	889	hgsc.bcm.edu;ucsc.edu	37	chr7	91851360	91851360	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtttatgatatggtttgagTtgaaggcctgaaaaacatca	11	4	1	4	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	91851360	T	C	91851360	2	2	7	1	0	0	0	0	0	0	0	1	8506	1722	60	2		2	KRIT1	7	91851360	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10	64179319	91851360	67287303	30	471											
MUC17	140453	mdanderson.org	37	chr7	100684573	100684573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcctgtcagcaccacaacGgtggccagttctgaaacgag	11	12	2	1	rs144023476	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	100684573	G	A	100684573	2	1	7	1	0	0	0	0	0	0	0	1	10052	1103	39	1		1	MUC17	7	100684573	Silent	SNP	G	TCGA-KL-8329-01A-11D-2310-10	8833213	100684573	58454090	31	472											
PRSS1	5644	mdanderson.org	37	chr7	142458542	142458542	+	Silent	SNP	A	A	G													atcaacgaacagtgggtggtAtcagcaggccactgctacaa					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	142458542	A	G	142458542	2	3	7	1	0	0	0	0	0	0	0	1	12703	436	16	4		4	PRSS1	7	142458542	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	41773969	142458542	16680121	32	473	10	2									
PRSS1	5644	mdanderson.org	37	chr7	142458551	142458551	+	Silent	SNP	C	C	T													cagtgggtggtatcagcaggCcactgctacaagtcgtaagt					rs199713773		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	142458551	C	T	142458551	2	4	7	1	0	0	0	0	0	0	0	1	12703	726	26	3		3	PRSS1	7	142458551	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	9	142458551	16680112	33	474	10	2									
PABPC1	26986	mdanderson.org	37	chr8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacctttgcactagtgattGtaccaaatggagaaaactct	7	8	1	2	rs202060459		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	101724606	G	A	101724606	3	1	7	1	0	0	0	0	1	0	0	0	11442	1377	48	4	986	4	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		101724606	44639416	34	475											
SPATC1	375686	broad.mit.edu	37	chr8	145095684	145095685	+	Frame_Shift_Ins	INS	-	-	C													tgtccccacctcccccaccaINScctcccccacggtcaccgtc					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	145095685	-	C	145095684	7	5	7	1	0	1	1	0	0	0	0	0	15117	159	6	0	992	0	SPATC1	8	145095684	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	43371078	145095684	1268338	35	476											
PLAA	9373	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	26905845	26905845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagttctattgcatgggaCatcagtgattccctctggga	10	9	4	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	26905845	C	T	26905845	3	4	7	1	0	0	0	0	1	0	0	0	12091	478	17	4	339	4	PLAA	9	26905845	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10		26905845	114307586	36	477											
KIF24	347240	mdanderson.org	37	chr9	34310782	34310782	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgagagattctttgaataAtgggaatatcacaatccccc	7	9	2	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	34310782	A	G	34310782	3	3	7	1	0	0	0	0	1	0	0	0	8353	101	4	4	3591	4	KIF24	9	34310782	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	7404937	34310782	106902649	37	478											
CNTNAP3	79937	broad.mit.edu	37	chr9	39178299	39178299	+	Frame_Shift_Del	DEL	T	T	-													tctcttattggttttaaaggTtttttatcaagtctatacag					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	39178299	T	-	39178299	7	5	7	1	0	1	0	1	0	0	0	0	3677	1722	60	0	3349	0	CNTNAP3	9	39178299	Frame_Shift_Del	DEL	T	TCGA-KL-8329-01A-11D-2310-10	4867517	39178299	102035132	38	479											
OR13C5	138799	mdanderson.org	37	chr9	107361111	107361111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacaagcaggatgaactcaTtgcctgagatgtcagcacag	10	10	3	2	rs6479259	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	107361111	T	C	107361111	3	2	7	1	0	0	0	0	1	0	0	0	11016	1493	52	4	374	4	OR13C5	9	107361111	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	68182812	107361111	33852320	39	480											
ZNF462	58499	broad.mit.edu	37	chr9	109690574	109690575	+	Frame_Shift_Ins	INS	-	-	C													aagcctgcagctagcttcagINSccaaccccgccatatcctcc					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	109690575	-	C	109690574	7	5	7	1	0	1	1	0	0	0	0	0	18031	971	34	0	4387	0	ZNF462	9	109690574	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	2329463	109690574	31522857	40	481											
COL27A1	85301	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	117052528	117052528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggggctgccagggcccCggggcgtggtggggagacag	22	10	0	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	117052528	C	T	117052528	3	4	7	1	0	0	0	0	1	0	0	0	3714	643	23	1	4471	1	COL27A1	9	117052528	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	7361954	117052528	24160903	41	482											
TNC	3371	broad.mit.edu	37	chr9	117838693	117838694	+	Frame_Shift_Ins	INS	-	-	T													agtgtggttttggttgtggcINSttgttggctctttggaacat					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	117838694	-	T	117838693	7	5	7	1	0	1	1	0	0	0	0	0	16374	797	28	0	3853	0	TNC	9	117838693	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	786165	117838693	23374738	42	483											
OR1Q1	158131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	125377830	125377830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctattcagtgaccaagggtCgcattataacagtcgtgtac	10	9	1	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	125377830	C	T	125377830	3	4	7	1	0	0	0	0	1	0	0	0	11050	884	31	1	816	1	OR1Q1	9	125377830	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	7539137	125377830	15835601	43	484											
NR5A1	2516	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	127262905	127262905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccattggcccgaatctGtgccttcttctgctgtttca	9	12	4	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	127262905	G	T	127262905	3	4	7	1	0	0	0	0	1	0	0	0	10714	1386	48	5	1067	5	NR5A1	9	127262905	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	1885075	127262905	13950526	44	485											
OBP2B	29989	mdanderson.org	37	chr9	136083528	136083528	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggggctcacaggcgctgTatttgccaggctcctccgtc	14	13	1	0	rs3192921	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	136083528	T	A	136083528	3	1	7	1	0	0	0	0	1	0	0	0	10890	1638	57	5	259	5	OBP2B	9	136083528	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	8820623	136083528	5129903	45	486											
CSGALNACT2	55454	mdanderson.org	37	chr10	43659338	43659339	+	Missense_Mutation	DNP	CT	CT	TG													tctaattttcacaattacacCttggtctcattgaatgaaga					rs114078794	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		TG	43659339	CT	TG	43659338	3	4	7	1	0	0	0	0	1	0	0	0	3970	668	24	4	1019	4	CSGALNACT2	10	43659338	Missense_Mutation	DNP	CT	TCGA-KL-8329-01A-11D-2310-10		43659338	91875409	46	487											
CSGALNACT2	55454	mdanderson.org	37	chr10	43659372	43659372	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaagaatttaatcgtggaCgaggactaaatgtgggtgcc	13	5	0	2	rs76607193	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	43659372	C	T	43659372	4	4	7	1	0	0	0	0	0	1	0	0	3970	528	19	1	1053	1	CSGALNACT2	10	43659372	Nonsense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	34	43659372	91875375	47	488											
ZNF365	22891	hgsc.bcm.edu;ucsc.edu	37	chr10	64415147	64415147	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaacacatctaaagaagccActgatgaaacaggctccccc	6	14	2	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	64415147	A	T	64415147	2	4	7	1	0	0	0	0	0	0	0	1	17974	146	6	5		5	ZNF365	10	64415147	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	20755775	64415147	71119600	48	489											
PTEN	5728	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	89717769	89717769	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacaaacagaacaagatgcTaaaaaaggtttgtactttac	6	8	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	89717769	T	A	89717769	3	1	7	1	0	0	0	0	1	0	0	0	12827	1522	53	5	820	5	PTEN	10	89717769	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	25302622	89717769	45816978	49	490											
PDCD4	27250	ucsc.edu	37	chr10	112657808	112657808	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagaaagcgttttgtaagcGaaggagatggaggtcgtctt	15	5	1	2	rs148548339	alternate_allele	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	112657808	G	C	112657808	3	2	7	1	0	0	0	0	1	0	0	0	11700	1059	37	5	1428	5	PDCD4	10	112657808	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	22940039	112657808	22876939	50	491											
MUC6	4588	mdanderson.org	37	chr11	1017966	1017966	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtggaacgtgagtgggaAgtgtggtctgagggtgtgat	20	2	1	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	1017966	A	G	1017966	3	3	7	1	0	0	0	0	1	0	0	0	10058	72	3	2	2496	2	MUC6	11	1017966	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10		1017966	133988550	51	492											
MUC5B	727897	broad.mit.edu	37	chr11	1264086	1264087	+	Frame_Shift_Ins	INS	-	-	C													cctccctgggcaccacctggINSacccgcctatcacagaccac					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	1264087	-	C	1264086	7	5	7	1	0	1	1	0	0	0	0	0	10057	1183	41	0	6107	0	MUC5B	11	1264086	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	246120	1264086	133742430	52	493											
PIK3C2A	5286	broad.mit.edu	37	chr11	17121508	17121508	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaagttctggtaaccctgaAggaatcatctgtagaagaaa	10	6	3	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	17121508	A	G	17121508	2	3	7	1	0	0	0	0	0	0	0	1	11989	59	3	2		2	PIK3C2A	11	17121508	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10	15857422	17121508	117885008	53	494											
OR5M8	219484	broad.mit.edu	37	chr11	56258238	56258239	+	Frame_Shift_Ins	INS	-	-	C													gagaaaaagaaaggttccagINSccagccacaataaacattga					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	56258239	-	C	56258238	7	5	7	1	0	1	1	0	0	0	0	0	11255	958	34	0	330	0	OR5M8	11	56258238	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	39136730	56258238	78748278	54	495											
P2RX3	5024	broad.mit.edu;mdanderson.org	37	chr11	57137381	57137381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagactacgctgaaaatcGcggctttgaccaacccagtg	10	11	0	3	rs201360035	alternate_allele	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	57137381	G	A	57137381	3	1	7	1	0	0	0	0	1	0	0	0	11420	1087	38	1	1151	1	P2RX3	11	57137381	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	879143	57137381	77869135	55	496											
POLA2	23649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	65048558	65048558	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagaccgggaacattcctcGggtgctcaaattccagtgga	13	10	1	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	65048558	G	A	65048558	2	1	7	1	0	0	0	0	0	0	0	1	12268	1103	39	1		1	POLA2	11	65048558	Silent	SNP	G	TCGA-KL-8329-01A-11D-2310-10	7911177	65048558	69957958	56	497											
DHCR7	1717	broad.mit.edu	37	chr11	71152273	71152273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccgctgctaagaacatacCagtctctggcgctggtgggg	13	12	1	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	71152273	C	T	71152273	3	4	7	1	0	0	0	0	1	0	0	0	4514	608	21	4	817	4	DHCR7	11	71152273	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	6103715	71152273	63854243	57	498											
FIGNL2	401720	hgsc.bcm.edu;mdanderson.org	37	chr12	52215205	52215205	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagacgggggagcccaggacCttgagggggacgccgccacc	17	13	0	2	rs116545797	byfrequency;by1000genomes	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	52215205	C	T	52215205	2	4	7	1	0	0	0	0	0	0	0	1	5942	680	24	4		4	FIGNL2	12	52215205	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10		52215205	81636690	58	499											
B4GALNT1	2583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	58022926	58022926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtccctcggtggagaacCggactgggaagaaaggacat	14	9	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	58022926	C	T	58022926	3	4	7	1	0	0	0	0	1	0	0	0	1270	652	23	1	905	1	B4GALNT1	12	58022926	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	5807721	58022926	75828969	59	500											
KIAA1033	23325	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	105504982	105504982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caactgagaagaattgaggaCgctctggatgactcaattgg	12	7	2	4	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	105504982	C	T	105504982	2	4	7	1	0	0	0	0	0	0	0	1	8267	535	19	1		1	KIAA1033	12	105504982	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	47482056	105504982	28346913	60	501											
TCTN2	79867	broad.mit.edu	37	chr12	124180975	124180976	+	Frame_Shift_Ins	INS	-	-	A													gtctaggttaccaacttggcINSaagcctgtccgagctctaaa					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	124180976	-	A	124180975	7	5	7	1	0	1	1	0	0	0	0	0	15827	697	25	0	1372	0	TCTN2	12	124180975	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	18675993	124180975	9670920	61	502											
POTEG	404785	mdanderson.org	37	chr14	19553760	19553760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagggggagcggcaagaGcaaagtgggcccttggggag	20	8	0	1	rs61430720		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	19553760	G	A	19553760	3	1	7	1	0	0	0	0	1	0	0	0	12346	971	34	4	346	4	POTEG	14	19553760	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		19553760	87795780	62	503											
AHNAK2	113146	mdanderson.org	37	chr14	105416872	105416872	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacaggtccccctccagcTgcgcaccatccagctttgct	10	17	0	0	rs148787429	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	105416872	T	C	105416872	3	2	7	1	0	0	0	0	1	0	0	0	415	1580	55	2	12475	2	AHNAK2	14	105416872	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	85863112	105416872	1932668	63	504											
MTA1	9112	ucsc.edu	37	chr14	105931063	105931063	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagccccaagtttgccatgaAgaccaggcaggctttctatc	10	12	1	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	105931063	A	G	105931063	3	3	7	1	0	0	0	0	1	0	0	0	9986	72	3	2	1455	2	MTA1	14	105931063	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	514191	105931063	1418477	64	505											
MTMR10	54893	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	31234179	31234179	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggatctggctttggttttaAtatcaatgaatttctccttg	8	6	3	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	31234179	A	T	31234179	3	4	7	1	0	0	0	0	1	0	0	0	10017	98	4	5	509	5	MTMR10	15	31234179	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10		31234179	71297213	65	506											
OTUD7A	161725	mdanderson.org;bcgsc.ca	37	chr15	31779425	31779425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaggggatccggatccacGtcacgttcatgtagctgtgc	14	11	2	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	31779425	G	A	31779425	3	1	7	1	0	0	0	0	1	0	0	0	11397	1145	40	1	1466	1	OTUD7A	15	31779425	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	545246	31779425	70751967	66	507											
IQGAP1	8826	broad.mit.edu;hgsc.bcm.edu	37	chr15	91030265	91030277	+	Frame_Shift_Del	DEL	GTTCGACGTGCCT	GTTCGACGTGCCT	-													tctctcaccctgaccaacaaGttcgacgtgcctggagatga					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	GTTCGACGTGCCT	GTTCGACGTGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	91030277	GTTCGACGTGCCT	-	91030265	7	5	7	1	0	1	0	1	0	0	0	0	7875	1020	36	0	4230	0	IQGAP1	15	91030265	Frame_Shift_Del	DEL	GTTCGACGTGCCT	TCGA-KL-8329-01A-11D-2310-10	59250840	91030265	11501127	67	508	11	2									
IQGAP1	8826	bcgsc.ca	37	chr15	91030266	91030278	+	Frame_Shift_Del	DEL	GTTCGACGTGCCT	GTTCGACGTGCCT	-													ctctcaccctgaccaacaagTtcgacgtgcctggagatgag					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	GTTCGACGTGCCT	GTTCGACGTGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		-	91030278	GTTCGACGTGCCT	-	91030266	7	5	7	1	0	1	0	1	0	0	0	0	7875	1725	60	0	4231	0	IQGAP1	15	91030266	Frame_Shift_Del	DEL	GTTCGACGTGCCT	TCGA-KL-8329-01A-11D-2310-10	1	91030266	11501126	68	509	11	2									
TPSD1	23430	mdanderson.org	37	chr16	1306355	1306355	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggcgagcccggcctacgTggcccctggtgagtcccagc	14	17	0	1	rs1800984	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	1306355	T	C	1306355	3	2	7	1	0	0	0	0	1	0	0	0	16530	1696	59	2	76	2	TPSD1	16	1306355	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		1306355	89048398	69	510											
ADCY9	115	broad.mit.edu	37	chr16	4016581	4016581	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caaagtccccgatgagctcgTtgaggacccggtagcactcc	11	14	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	4016581	T	A	4016581	3	1	7	1	0	0	0	0	1	0	0	0	301	1725	60	5	808	5	ADCY9	16	4016581	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	2710226	4016581	86338172	70	511											
CSNK2A2	1459	broad.mit.edu	37	chr16	58199559	58199559	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctagggcctcagggctgAcaaggtgtctgttctcacta	12	10	4	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	58199559	A	G	58199559	3	3	7	1	0	0	0	0	1	0	0	0	3989	275	10	2	179	2	CSNK2A2	16	58199559	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	54182978	58199559	32155194	71	512											
MNT	4335	ucsc.edu	37	chr17	2290424	2290424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcgggtacaagggcagcTgggagcccaggtgggccaca	18	11	0	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	2290424	T	C	2290424	3	2	7	1	0	0	0	0	1	0	0	0	9756	1580	55	2	232	2	MNT	17	2290424	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		2290424	78904786	72	513											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7577594	7577594	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagttgtagtggatggtggtAcagtcagagccaacctagga	14	6	1	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	7577594	A	T	7577594	4	4	7	1	0	0	0	0	0	1	0	0	16486	389	14	5	603	5	TP53	17	7577594	Nonsense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	5287170	7577594	73617616	73	514			2	4		3	3	1719	N	T_C_A	1.44291e-05
TP53	7157	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtgtttctgtcatccaaaTactccacacgcaaatttcct	4	12	2	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	7578235	T	C	7578235	3	2	7	1	0	0	0	0	1	0	0	0	16486	1406	49	4	680	4	TP53	17	7578235	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	641	7578235	73616975	74	515			2	4		3	3	1719	N	T_C_A	1.44291e-05
TP53	7157	hgsc.bcm.edu;mdanderson.org	37	chr17	7579312	7579312	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccctcagggcaactgacCgtgcaagtcacagacttggc	11	14	2	2	rs55863639	alternate_allele	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	7579312	C	T	7579312	2	4	7	1	0	0	0	0	0	0	0	1	16486	666	23	1		1	TP53	17	7579312	Silent	SNP	C	TCGA-KL-8329-01A-11D-2310-10	1077	7579312	73615898	75	516			2	4		3	3	1719	N	T_C_A	1.44291e-05
RAB11FIP4	84440	ucsc.edu	37	chr17	29844874	29844874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggacgggggacttggggGcctgtttctgccagaagaca	17	8	1	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	29844874	G	T	29844874	3	4	7	1	0	0	0	0	1	0	0	0	12988	1203	42	5	556	5	RAB11FIP4	17	29844874	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	22265562	29844874	51350336	76	517											
TLK2	11011	mdanderson.org	37	chr17	60637441	60637441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctagagaaatacaaggaacGattaaatagatgtgtgacaa	10	4	0	3	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	60637441	G	A	60637441	3	1	7	1	0	0	0	0	1	0	0	0	16048	1058	37	1	819	1	TLK2	17	60637441	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	30792567	60637441	20557769	77	518											
CASKIN2	57513	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	73502411	73502411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagcagccgcaccacctcgGtcttgccatacagtgcggcc	11	16	1	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	73502411	G	A	73502411	3	1	7	1	0	0	0	0	1	0	0	0	2692	1261	44	3	2959	3	CASKIN2	17	73502411	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	12864970	73502411	7692799	78	519											
SERPINB5	5268	mdanderson.org	37	chr18	61170782	61170782	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtggccctatcaaatgttAtccacaaagtgtgcttagaa	9	8	1	1	rs1455555	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	61170782	A	G	61170782	3	3	7	1	0	0	0	0	1	0	0	0	14201	449	16	4	977	4	SERPINB5	18	61170782	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10		61170782	16906466	79	520											
PLIN5	440503	ucsc.edu;bcgsc.ca	37	chr19	4534034	4534034	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcagccctcacctgctggTcctgctcccacacactggat	10	17	1	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	4534034	T	C	4534034	3	2	7	1	0	0	0	0	1	0	0	0	12173	1667	58	2	1366	2	PLIN5	19	4534034	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		4534034	54594949	80	521											
EMR2	30817	mdanderson.org	37	chr19	14877799	14877799	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcctctacctgtgcagaGcttcgggtcctcaggtttga	14	11	2	2	rs74182236		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	14877799	G	C	14877799	3	2	7	1	0	0	0	0	1	0	0	0	5144	971	34	5	2057	5	EMR2	19	14877799	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	10343765	14877799	44251184	81	522											
ZNF676	163223	mdanderson.org	37	chr19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gggttgagacgctactaaatCctttgccacattcttcacat	7	11	2	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	22363737	C	G	22363737	3	3	7	1	0	0	0	0	1	0	0	0	18188	855	30	5	988	5	ZNF676	19	22363737	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	7485938	22363737	36765246	82	523											
ANKRD27	84079	broad.mit.edu;mdanderson.org	37	chr19	33113410	33113410	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgttctgcagcaatgtcTctatgacgccttggtagccc	9	14	2	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	33113410	T	C	33113410	3	2	7	1	0	0	0	0	1	0	0	0	655	1551	54	2	1455	2	ANKRD27	19	33113410	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	10749673	33113410	26015573	83	524											
CEACAM5	1048	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	42222091	42222091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccctcatacacctattacCgtccaggggtgaacctcagc	7	17	2	1	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	42222091	C	T	42222091	3	4	7	1	0	0	0	0	1	0	0	0	3224	652	23	1	1304	1	CEACAM5	19	42222091	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	9108681	42222091	16906892	84	525											
ZNF225	7768	broad.mit.edu;hgsc.bcm.edu	37	chr19	44635141	44635142	+	Frame_Shift_Ins	INS	-	-	CAAA													gtaaacagctttcagttctcINScaaacaagatgatatgccct					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		CAAA	44635142	-	CAAA	44635141	7	5	7	1	0	1	1	0	0	0	0	0	17884	855	30	0	388	0	ZNF225	19	44635141	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	2413050	44635141	14493842	85	526	12	2									
ZNF225	7768	bcgsc.ca	37	chr19	44635142	44635143	+	Frame_Shift_Ins	INS	-	-	CAAA													taaacagctttcagttctccINSaaacaagatgatatgccctg					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		CAAA	44635143	-	CAAA	44635142	7	5	7	1	0	1	1	0	0	0	0	0	17884	581	21	0	389	0	ZNF225	19	44635142	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	1	44635142	14493841	86	527	12	2									
ZNF285	26974	mdanderson.org	37	chr19	44890685	44890685	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgagtcagaaggtccttTccacgctcacaatgtgtgta	10	9	2	3	rs73039936	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	44890685	T	G	44890685	2	3	7	1	0	0	0	0	0	0	0	1	17927	1770	62	5		5	ZNF285	19	44890685	Silent	SNP	T	TCGA-KL-8329-01A-11D-2310-10	255543	44890685	14238298	87	528											
LILRB5	10990	mdanderson.org	37	chr19	54758897	54758897	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcgggtatgtcagggatcAgtcctggagagaagaaggat	18	5	2	2	rs201754865		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	54758897	A	T	54758897	3	4	7	1	0	0	0	0	1	0	0	0	8857	188	7	5	851	5	LILRB5	19	54758897	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	9868212	54758897	4370086	88	529			3	5		3	3	394	N	G_C_A	7.556592e-07
LILRB5	10990	mdanderson.org	37	chr19	54759241	54759241	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtactggcccccgtgggagCggctcacagggcccagggtg	17	13	1	0	rs146167320	byfrequency	TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	54759241	C	G	54759241	3	3	7	1	0	0	0	0	1	0	0	0	8857	768	27	5	951	5	LILRB5	19	54759241	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	344	54759241	4369742	89	530			3	5		3	3	394	N	G_C_A	7.556592e-07
LILRB5	10990	mdanderson.org	37	chr19	54759290	54759290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagagcccagcctgggGctgctggccagagccctgga	17	13	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	54759290	G	A	54759290	3	1	7	1	0	0	0	0	1	0	0	0	8857	1203	42	3	1000	3	LILRB5	19	54759290	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	49	54759290	4369693	90	531			3	5		3	3	394	N	G_C_A	7.556592e-07
LILRA4	23547	mdanderson.org	37	chr19	54845018	54845018	+	Missense_Mutation	SNP	T	T	C													ggatgagattctccactgtgTaatcctggaggtgtggggct					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	54845018	T	C	54845018	3	2	7	1	0	0	0	0	1	0	0	0	8850	1638	57	2	178	2	LILRA4	19	54845018	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	85728	54845018	4283965	91	532	13	2									
LILRA4	23547	mdanderson.org	37	chr19	54845027	54845027	+	Missense_Mutation	SNP	A	A	T													tctccactgtgtaatcctggAggtgtggggctagggatggt					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	54845027	A	T	54845027	3	4	7	1	0	0	0	0	1	0	0	0	8850	304	11	5	187	5	LILRA4	19	54845027	Missense_Mutation	SNP	A	TCGA-KL-8329-01A-11D-2310-10	9	54845027	4283956	92	533	13	2									
CSRP2BP	57325	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr20	18162415	18162415	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtttttgtatcgcttggTaggatcagaagatatggctg	12	5	1	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		C	18162415	T	C	18162415	3	2	7	1	0	0	0	0	1	0	0	0	3999	1638	57	2	1759	2	CSRP2BP	20	18162415	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10		18162415	44863105	93	534											
EEF1A2	1917	broad.mit.edu;mdanderson.org	37	chr20	62127325	62127325	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagatgtcgatggtgatgcCgcgctcacgctccgccttca	13	13	2	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	62127325	C	T	62127325	3	4	7	1	0	0	0	0	1	0	0	0	4961	652	23	1	1207	1	EEF1A2	20	62127325	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	43964910	62127325	898195	94	535											
KRTAP26-1	388818	broad.mit.edu	37	chr21	31692295	31692296	+	Frame_Shift_Ins	INS	-	-	G													ggaggtgagaggaatatggcINSgggaggttctgagagatcct					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	31692296	-	G	31692295	7	5	7	1	0	1	1	0	0	0	0	0	8605	768	27	0	577	0	KRTAP26-1	21	31692295	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10		31692295	16437600	95	536											
TIAM1	7074	broad.mit.edu;hgsc.bcm.edu	37	chr21	32624265	32624265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcgccgagccggcctcctCcaggctctcgctgttggtgg	15	15	1	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	32624265	C	T	32624265	3	4	7	1	0	0	0	0	1	0	0	0	15994	864	30	3	3667	3	TIAM1	21	32624265	Missense_Mutation	SNP	C	TCGA-KL-8329-01A-11D-2310-10	931970	32624265	15505630	96	537											
GCFC1	94104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr21	34134451	34134451	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgtgacttttctttcacaGaaaaaactatccggcgtttc	6	9	2	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		T	34134451	G	T	34134451	3	4	7	1	0	0	0	0	1	0	0	0	6343	942	33	5	2104	5	GCFC1	21	34134451	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10	1510186	34134451	13995444	97	538											
SIK1	150094	broad.mit.edu	37	chr21	44837550	44837551	+	Frame_Shift_Ins	INS	-	-	G													cccctgctggcccggctggcINSgggggcctggcacacctggc					novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	44837551	-	G	44837550	7	5	7	1	0	1	1	0	0	0	0	0	14415	768	27	0	510	0	SIK1	21	44837550	Frame_Shift_Ins	INS	-	TCGA-KL-8329-01A-11D-2310-10	10703099	44837550	3292345	98	539											
MCM3AP	8888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr21	47705096	47705096	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtccaaaaagagaaggTtgaccaaatcgaaatggcgg	11	6	0	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	47705096	T	A	47705096	3	1	7	1	0	0	0	0	1	0	0	0	9465	1722	60	5	5949	5	MCM3AP	21	47705096	Missense_Mutation	SNP	T	TCGA-KL-8329-01A-11D-2310-10	2867546	47705096	424799	99	540											
TRIOBP	11078	mdanderson.org	37	chr22	38120095	38120095	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcccagcgggacaatcccaGagcctccagaacctcctctc	8	18	1	2	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		A	38120095	G	A	38120095	3	1	7	1	0	0	0	0	1	0	0	0	16658	942	33	4	1550	4	TRIOBP	22	38120095	Missense_Mutation	SNP	G	TCGA-KL-8329-01A-11D-2310-10		38120095	13184471	100	541											
KDM5C	8242	broad.mit.edu	37	chrX	53222786	53222786	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaacacagggccagtcaActgtggcaacagcgaggaca	11	12	1	0	novel		TCGA-KL-8329-01A-11D-2310-10	TCGA-KL-8329-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9453974-c7a0-4ace-8a46-2047f3328711	fe78c18d-8b68-4d67-bdae-07e288693c0f		G	53222786	A	G	53222786	2	3	7	1	0	0	0	0	0	0	0	1	8196	40	2	2		2	KDM5C	23	53222786	Silent	SNP	A	TCGA-KL-8329-01A-11D-2310-10		53222786	102047774	101	542											
SKI	6497	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	2235813	2235813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgggctccccgggtgcgcGtgccctgccctcggccgtcc	14	20	0	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	2235813	G	T	2235813	3	4	8	1	0	0	0	0	1	0	0	0	14455	1145	40	5	1574	5	SKI	1	2235813	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		2235813	247014808	1	543											
PLK3	1263	broad.mit.edu	37	chr1	45270133	45270133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgccgtgtggctgtgctcTtcaacgatggcacacatatg	12	12	2	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	45270133	T	C	45270133	3	2	8	1	0	0	0	0	1	0	0	0	12177	1609	56	2	1511	2	PLK3	1	45270133	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	43034320	45270133	203980488	2	544											
C1orf52	148423	broad.mit.edu	37	chr1	85718363	85718363	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctactttgcgctttttagaAgtatgctcatctttttcatc	5	9	4	1	rs111657378		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	85718363	A	G	85718363	2	3	8	1	0	0	0	0	0	0	0	1	2064	59	3	2		2	C1orf52	1	85718363	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	40448230	85718363	163532258	3	545											
NOTCH2	4853	broad.mit.edu	37	chr1	120462211	120462211	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctgcctcctcggagagaAgccaacatcaatggggtgca	13	11	1	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	120462211	A	G	120462211	2	3	8	1	0	0	0	0	0	0	0	1	10627	59	3	2		2	NOTCH2	1	120462211	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	34743848	120462211	128788410	4	546											
FLG	2312	bcgsc.ca	37	chr1	152283467	152283467	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gccatctcttgactgctcccGagaagatccatgatggtttc	9	12	1	4	rs200557207		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	152283467	G	C	152283467	3	2	8	1	0	0	0	0	1	0	0	0	5971	1057	37	5	8294	5	FLG	1	152283467	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	31821256	152283467	96967154	5	547											
AQP10	89872	mdanderson.org	37	chr1	154294464	154294464	+	Missense_Mutation	SNP	A	A	G													cagtggagaaaccaaaggcaActtcttcaccatgtttctgg					rs77290607		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	154294464	A	G	154294464	3	3	8	1	0	0	0	0	1	0	0	0	824	43	2	2	167	2	AQP10	1	154294464	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	2010997	154294464	94956157	6	548	14	2									
AQP10	89872	mdanderson.org	37	chr1	154294471	154294471	+	Silent	SNP	C	C	T													gaaaccaaaggcaacttcttCaccatgtttctggctggctc					rs78213238	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	154294471	C	T	154294471	2	4	8	1	0	0	0	0	0	0	0	1	824	825	29	4		4	AQP10	1	154294471	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	7	154294471	94956150	7	549	14	2									
FMN2	56776	mdanderson.org	37	chr1	240371328	240371328	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccccctctacccggagcGggcataccccctccgccccc	7	25	1	0	rs71646895	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	240371328	G	A	240371328	2	1	8	1	0	0	0	0	0	0	0	1	5999	1103	39	1		1	FMN2	1	240371328	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	86076857	240371328	8879293	8	550											
PPM1G	5496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	27607890	27607890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacagttctgcccgtagcGtgtcagcagctcttcaatag	11	11	4	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	27607890	G	A	27607890	3	1	8	1	0	0	0	0	1	0	0	0	12425	1145	40	1	1189	1	PPM1G	2	27607890	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		27607890	215591483	9	551											
TIA1	7072	bcgsc.ca	37	chr2	70463215	70463215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaatacccttacatccAtaatcattttgcagttttta	3	8	1	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	70463215	A	G	70463215	3	3	8	1	0	0	0	0	1	0	0	0	15991	217	8	4	1089	4	TIA1	2	70463215	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	42855325	70463215	172736158	10	552											
ATP6V1B1	525	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	71192114	71192114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acgagaaccgctcggtgttcGagtcgctggacctgggctgg	16	11	0	1	rs140980255		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	71192114	G	A	71192114	3	1	8	1	0	0	0	0	1	0	0	0	1182	1059	37	1	1459	1	ATP6V1B1	2	71192114	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	728899	71192114	172007259	11	553											
DUSP11	8446	ucsc.edu;bcgsc.ca	37	chr2	73996401	73996401	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcaacttacctgcaaatgAggtagccagtcctgtttaaa	9	9	0	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	73996401	A	G	73996401	3	3	8	1	0	0	0	0	1	0	0	0	4848	304	11	2	527	2	DUSP11	2	73996401	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	2804287	73996401	169202972	12	554											
SCG2	7857	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	224462648	224462648	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatatggattgggaaaataCgacgttttctgatttgctgc	10	5	1	1	rs143843249	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	224462648	C	T	224462648	2	4	8	1	0	0	0	0	0	0	0	1	13987	523	19	1		1	SCG2	2	224462648	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	150466247	224462648	18736725	13	555											
ZNF445	353274	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	44488434	44488434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctctggtgactggaaaggGtatgtctcccaatgaactct	10	10	3	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	44488434	G	C	44488434	3	2	8	1	0	0	0	0	1	0	0	0	18023	1261	44	5	370	5	ZNF445	3	44488434	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		44488434	153533996	14	556											
TMEM108	66000	mdanderson.org	37	chr3	133098856	133098856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcacaccatctccaccatcGctgcgacagtaaccgccccc	6	21	1	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	133098856	G	A	133098856	3	1	8	1	0	0	0	0	1	0	0	0	16128	1087	38	1	307	1	TMEM108	3	133098856	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	88610422	133098856	64923574	15	557											
MUC4	4585	mdanderson.org	37	chr3	195505833	195505833	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgacaggaagaggggtGgcgtgacctgtggatgctga	19	6	0	4	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	195505833	G	A	195505833	2	1	8	1	0	0	0	0	0	0	0	1	10056	1335	47	4		4	MUC4	3	195505833	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	62406977	195505833	2516597	16	558			1	6		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	chr3	195509209	195509209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatGctgaggaagtgtcggtgaca	19	6	0	3	rs79077485		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	195509209	G	A	195509209	3	1	8	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195509209	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	3376	195509209	2513221	17	559			1	6		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	chr3	195511474	195511474	+	Missense_Mutation	SNP	A	A	G													cacctgtggatgctgaggaaAggctggtgacaggaagaggg					rs77680876	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	195511474	A	G	195511474	3	3	8	1	0	0	0	0	1	0	0	0	10056	72	3	2		2	MUC4	3	195511474	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	2265	195511474	2510956	18	560	15	2	1	6		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	chr3	195511479	195511479	+	Silent	SNP	G	G	A													gtggatgctgaggaaaggctGgtgacaggaagaggggtggc					rs200148982		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	195511479	G	A	195511479	2	1	8	1	0	0	0	0	0	0	0	1	10056	1335	47	4		4	MUC4	3	195511479	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	5	195511479	2510951	19	561	15	2	1	6		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	chr3	195511889	195511889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagaggggtggcgtgacCtgtggatgctgaggaagtgt	20	4	0	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	195511889	C	T	195511889	3	4	8	1	0	0	0	0	1	0	0	0	10056	681	24	4		4	MUC4	3	195511889	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	410	195511889	2510541	20	562			1	6		6	5	9590	N	G_C_A	1.391805e-08
MUC4	4585	mdanderson.org	37	chr3	195515422	195515422	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagggctggtgacaGgaagaggggtggcgtgacct	20	6	0	4	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	195515422	G	T	195515422	3	4	8	1	0	0	0	0	1	0	0	0	10056	1000	35	5		5	MUC4	3	195515422	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	3533	195515422	2507008	21	563			1	6		6	5	9590	N	G_C_A	1.391805e-08
RBM47	54502	broad.mit.edu;hgsc.bcm.edu	37	chr4	40438607	40438608	+	Frame_Shift_Ins	INS	-	-	T													tcccccgaggtaggaaccccINStaggccctggggctctgttg					novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	40438608	-	T	40438607	7	5	8	1	0	1	1	0	0	0	0	0	13233	681	24	0	612	0	RBM47	4	40438607	Frame_Shift_Ins	INS	-	TCGA-KL-8330-01A-11D-2310-10		40438607	150715669	22	564	16	2									
RBM47	54502	bcgsc.ca	37	chr4	40438608	40438609	+	Frame_Shift_Ins	INS	-	-	T													cccccgaggtaggaacccctINSaggccctggggctctgttgc					novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	40438609	-	T	40438608	7	5	8	1	0	1	1	0	0	0	0	0	13233	1521	53	0	613	0	RBM47	4	40438608	Frame_Shift_Ins	INS	-	TCGA-KL-8330-01A-11D-2310-10	1	40438608	150715668	23	565	16	2									
UGT2B7	7364	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	69978239	69978239	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaccagtgaagcccctggatCgagcagtcttctggattgaa	11	10	2	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	69978239	C	T	69978239	4	4	8	1	0	0	0	0	0	1	0	0	17068	876	31	1	1397	1	UGT2B7	4	69978239	Nonsense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	29539631	69978239	121176037	24	566											
RUFY3	22902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	71588442	71588442	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctggatgacatctcacttaCacctgacccagagcctaccc	7	16	1	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	71588442	C	A	71588442	3	1	8	1	0	0	0	0	1	0	0	0	13835	478	17	5	516	5	RUFY3	4	71588442	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	1610203	71588442	119565834	25	567											
AGPAT9	84803	broad.mit.edu	37	chr4	84518658	84518658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaggaaccatacatccagTtgcaattaaggtaaaacaga	9	7	0	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	84518658	T	C	84518658	3	2	8	1	0	0	0	0	1	0	0	0	392	1725	60	2	1020	2	AGPAT9	4	84518658	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	12930216	84518658	106635618	26	568											
LARP7	51574	broad.mit.edu	37	chr4	113568911	113568911	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatagctctctcttgaaaAcaaaaaggaaacataagaaa	6	6	2	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	113568911	A	G	113568911	3	3	8	1	0	0	0	0	1	0	0	0	8695	43	2	2	1089	2	LARP7	4	113568911	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	29050253	113568911	77585365	27	569											
ANK2	287	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	114275928	114275928	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaatcagacaatcaaaCgaggccagagactcccggta	10	11	2	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	114275928	C	T	114275928	4	4	8	1	0	0	0	0	0	1	0	0	621	528	19	1	6369	1	ANK2	4	114275928	Nonsense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	707017	114275928	76878348	28	570											
SPEF2	79925	ucsc.edu	37	chr5	35774017	35774017	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcaccacctatggcagaAgcaactcctgtcatagtaac	6	12	2	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	35774017	A	G	35774017	2	3	8	1	0	0	0	0	0	0	0	1	15135	69	3	2		2	SPEF2	5	35774017	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10		35774017	145141243	29	571											
CAMK4	814	bcgsc.ca	37	chr5	110820081	110820081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgaagactgtggaggagGcagcagctcccagagaaggg	17	8	0	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	110820081	G	A	110820081	3	1	8	1	0	0	0	0	1	0	0	0	2630	1203	42	3	1381	3	CAMK4	5	110820081	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	75046064	110820081	70095179	30	572											
SRFBP1	153443	ucsc.edu	37	chr5	121309892	121309892	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgctttattcttcaaaggTtgtgaagatgagaaaagaag	10	3	2	4	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	121309892	T	C	121309892	3	2	8	1	0	0	0	0	1	0	0	0	15244	1739	60	2	44	2	SRFBP1	5	121309892	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	10489811	121309892	59605368	31	573											
PCDHGC3	5098	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	140857474	140857474	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacgggtggtaggctgggaCgcggatgcagggcacaatgc	18	9	1	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	140857474	C	T	140857474	2	4	8	1	0	0	0	0	0	0	0	1	11648	535	19	1		1	PCDHGC3	5	140857474	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	19547582	140857474	40057786	32	574											
FAM8A1	51439	mdanderson.org	37	chr6	17608519	17608519	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcagcataatcgaacagcTtatgacattgtagcaggaac	8	8	1	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	17608519	T	C	17608519	2	2	8	1	0	0	0	0	0	0	0	1	5698	1596	56	2		2	FAM8A1	6	17608519	Silent	SNP	T	TCGA-KL-8330-01A-11D-2310-10		17608519	153506548	33	575											
HLA-C	3107	mdanderson.org	37	chr6	31238970	31238970	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcctccaacttgcgctgggTgatctgagccgcggtgtccg	14	14	1	2	rs142570222	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	31238970	T	A	31238970	3	1	8	1	0	0	0	0	1	0	0	0	7255	1696	59	5	625	5	HLA-C	6	31238970	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	13630451	31238970	139876097	34	576											
DST	667	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	56417258	56417258	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctaacatcatcttgcaggtTttattggcattgtcattgct	8	8	3	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	56417258	T	A	56417258	3	1	8	1	0	0	0	0	1	0	0	0	4820	1838	64	5	7224	5	DST	6	56417258	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	25178288	56417258	114697809	35	577											
SYNJ2	8871	mdanderson.org	37	chr6	158507981	158507981	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgtcggtccccaaccgGcctcggccacctcaaccccc	7	22	2	0	rs2296506	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	158507981	G	A	158507981	2	1	8	1	0	0	0	0	0	0	0	1	15554	1190	42	3		3	SYNJ2	6	158507981	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	102090723	158507981	12607086	36	578											
DOCK4	9732	broad.mit.edu;ucsc.edu	37	chr7	111368593	111368593	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctcggcacgggcaccggcaCtggcaccggcaggggggccg	19	15	0	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	111368593	C	G	111368593	3	3	8	1	0	0	0	0	1	0	0	0	4726	565	20	5	266	5	DOCK4	7	111368593	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10		111368593	47770070	37	579											
BHLHE22	27319	mdanderson.org	37	chr8	65493429	65493429	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcctgagcgcctccaccTccaagcgcttggaagcggct	12	15	0	2	rs7016250	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	65493429	T	G	65493429	3	3	8	1	0	0	0	0	1	0	0	0	1426	1551	54	5	84	5	BHLHE22	8	65493429	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10		65493429	80870593	38	580											
CHMP4C	92421	broad.mit.edu	37	chr8	82644910	82644911	+	Frame_Shift_Ins	INS	-	-	G													gggcggctcttctaagagccINSgagccgctcccagtccccag					novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	82644911	-	G	82644910	7	5	8	1	0	1	1	0	0	0	0	0	3387	644	23	0	51	0	CHMP4C	8	82644910	Frame_Shift_Ins	INS	-	TCGA-KL-8330-01A-11D-2310-10	17151481	82644910	63719112	39	581											
CSMD3	114788	mdanderson.org	37	chr8	113237129	113237129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttattttcatgaactgaAcatcctgtatactgtgtttt	6	6	1	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	113237129	A	G	113237129	2	3	8	1	0	0	0	0	0	0	0	1	3977	41	2	2		2	CSMD3	8	113237129	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	30592219	113237129	33126893	40	582											
ZNF696	79943	mdanderson.org	37	chr8	144378277	144378277	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcggacgcggcaaagcaccgGagcatccactcgggggagaa	15	12	0	1	rs61729412	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	144378277	G	C	144378277	2	2	8	1	0	0	0	0	0	0	0	1	18204	1161	41	5		5	ZNF696	8	144378277	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	31141148	144378277	1985745	41	583											
ZCCHC6	79670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	88937294	88937294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaaacttgggtgttaatgGtggcagaggttctagctgga	14	4	1	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	88937294	G	A	88937294	3	1	8	1	0	0	0	0	1	0	0	0	17697	1261	44	3	1569	3	ZCCHC6	9	88937294	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		88937294	52276137	42	584											
OR13C2	392376	mdanderson.org	37	chr9	107367674	107367674	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagctcactagcgtggaggGaatagaggtggtggtgtagc	18	5	1	1	rs7025570	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	107367674	G	A	107367674	3	1	8	1	0	0	0	0	1	0	0	0	11013	1174	41	3	724	3	OR13C2	9	107367674	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	18430380	107367674	33845757	43	585											
CDHR5	53841	broad.mit.edu	37	chr11	618824	618824	+	Frame_Shift_Del	DEL	A	A	-													actggggggcatcggctgagAggttcctggctctggggtct					novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		-	618824	A	-	618824	7	5	8	1	0	1	0	1	0	0	0	0	3151	304	11	0	814	0	CDHR5	11	618824	Frame_Shift_Del	DEL	A	TCGA-KL-8330-01A-11D-2310-10		618824	134387692	44	586	17	2									
CDHR5	53841	broad.mit.edu	37	chr11	618827	618827	+	Frame_Shift_Del	DEL	T	T	-													ggggggcatcggctgagaggTtcctggctctggggtctgtg					novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		-	618827	T	-	618827	7	5	8	1	0	1	0	1	0	0	0	0	3151	1725	60	0	817	0	CDHR5	11	618827	Frame_Shift_Del	DEL	T	TCGA-KL-8330-01A-11D-2310-10	3	618827	134387689	45	587	17	2									
MUC6	4588	bcgsc.ca	37	chr11	1017280	1017280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caaggaggtggagaaagatgGaacgtgagtgggaagtgtgg	20	2	0	3	rs199539548		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	1017280	G	T	1017280	3	4	8	1	0	0	0	0	1	0	0	0	10058	1174	41	5	1810	5	MUC6	11	1017280	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	398453	1017280	133989236	46	588											
MUC6	4588	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	1024889	1024889	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggctgttgatgacgctgcaCttgcgctcggcccaggagcg	15	12	0	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	1024889	C	G	1024889	3	3	8	1	0	0	0	0	1	0	0	0	10058	564	20	5	4179	5	MUC6	11	1024889	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	7609	1024889	133981627	47	589											
MUC5B	727897	mdanderson.org	37	chr11	1270382	1270382	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccaccccgggccacaccaCggccacctccaggaccacgg	10	21	0	0	rs71469879		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	1270382	C	G	1270382	3	3	8	1	0	0	0	0	1	0	0	0	10057	536	19	5	12403	5	MUC5B	11	1270382	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	245493	1270382	133736134	48	590											
FUT4	2526	ucsc.edu;mdanderson.org	37	chr11	94278062	94278062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actggcccccgccctggggcAtccaggcgcacactgccgag	13	18	0	0	rs2230273	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	94278062	A	G	94278062	3	3	8	1	0	0	0	0	1	0	0	0	6158	217	8	4	765	4	FUT4	11	94278062	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	93007680	94278062	40728454	49	591											
MMP3	4314	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr11	102709283	102709283	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catttctcttgcatctcaccTccagtatttgtcctctacaa	3	14	3	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	102709283	T	G	102709283	2	3	8	1	0	0	0	0	0	0	0	1	9744	1565	54	5		5	MMP3	11	102709283	Silent	SNP	T	TCGA-KL-8330-01A-11D-2310-10	8431221	102709283	32297233	50	592											
GLB1L2	89944	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	134214285	134214285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcatttctgttgcagctatGttccgtggaacctgcatgag	10	9	2	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	134214285	G	T	134214285	3	4	8	1	0	0	0	0	1	0	0	0	6485	1377	48	5	299	5	GLB1L2	11	134214285	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	31505002	134214285	792231	51	593											
CD163	9332	mdanderson.org;bcgsc.ca	37	chr12	7649507	7649507	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caggttcatgtccctggcaaGaaacgctgtcaagccagatg	11	11	2	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	7649507	G	T	7649507	3	4	8	1	0	0	0	0	1	0	0	0	2996	942	33	5	2517	5	CD163	12	7649507	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		7649507	126202388	52	594											
KCNJ8	3764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	21918737	21918737	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggaagaattgttccttcGgatagaattgttcctcctca	10	8	1	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	21918737	G	T	21918737	2	4	8	1	0	0	0	0	0	0	0	1	8117	1124	39	5		5	KCNJ8	12	21918737	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	14269230	21918737	111933158	53	595											
KRT85	3891	mdanderson.org	37	chr12	52760938	52760938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtccgcacacgcccccGgagcggtagccgaagctgcg	15	16	0	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	52760938	G	A	52760938	2	1	8	1	0	0	0	0	0	0	0	1	8560	1103	39	1		1	KRT85	12	52760938	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	30842201	52760938	81090957	54	596											
RPH3A	22895	hgsc.bcm.edu;mdanderson.org	37	chr12	113303275	113303275	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggctggagatggggtgaAccgctgcatactgtgtggag	18	7	0	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	113303275	A	G	113303275	3	3	8	1	0	0	0	0	1	0	0	0	13646	43	2	2	301	2	RPH3A	12	113303275	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	60542337	113303275	20548620	55	597											
KIAA1704	55425	broad.mit.edu;bcgsc.ca	37	chr13	45582989	45582989	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctacacagaaaagtgacaAgggcagagatgatccaggac	11	8	1	4	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	45582989	A	G	45582989	3	3	8	1	0	0	0	0	1	0	0	0	8313	72	3	2	397	2	KIAA1704	13	45582989	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10		45582989	69586889	56	598											
LTB4R2	56413	mdanderson.org	37	chr14	24780364	24780364	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaccgccacctgtggagggAccgcgtatgccagctgtgcc	13	15	0	0	rs1950504	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	24780364	A	G	24780364	3	3	8	1	0	0	0	0	1	0	0	0	9144	275	10	2	496	2	LTB4R2	14	24780364	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10		24780364	82569176	57	599											
AHNAK2	113146	mdanderson.org	37	chr14	105413649	105413649	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccctctgggagtttcacAtccacctggccagcctggac	11	15	2	0	rs201545349		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	105413649	A	G	105413649	2	3	8	1	0	0	0	0	0	0	0	1	415	214	8	4		4	AHNAK2	14	105413649	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	80633285	105413649	1935891	58	600			2	7		4	4	2013	N	T_C_A	2.159996e-08
AHNAK2	113146	mdanderson.org	37	chr14	105413682	105413682	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctggacctccagttgggcAgaggggggctgaatgctgat	17	9	0	3	rs200358766	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	105413682	A	G	105413682	2	3	8	1	0	0	0	0	0	0	0	1	415	175	7	2		2	AHNAK2	14	105413682	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	33	105413682	1935858	59	601			2	7		4	4	2013	N	T_C_A	2.159996e-08
AHNAK2	113146	mdanderson.org	37	chr14	105413702	105413702	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggggggctgaatgctgaTgtcagtggtcttaaggtccc	16	7	2	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	105413702	T	G	105413702	3	3	8	1	0	0	0	0	1	0	0	0	415	1464	51	5	9305	5	AHNAK2	14	105413702	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	20	105413702	1935838	60	602			2	7		4	4	2013	N	T_C_A	2.159996e-08
AHNAK2	113146	mdanderson.org	37	chr14	105415661	105415661	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtctggaccttcaggtcggCagaagggggctgaatgctga	16	8	2	3	rs200010377		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	105415661	C	T	105415661	3	4	8	1	0	0	0	0	1	0	0	0	415	710	25	4	11264	4	AHNAK2	14	105415661	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	1959	105415661	1933879	61	603			2	7		4	4	2013	N	T_C_A	2.159996e-08
PPIP5K1	9677	broad.mit.edu	37	chr15	43827440	43827440	+	Frame_Shift_Del	DEL	A	A	-													cgtatggctggctggtttccAtaggtggcacctgtggggac					novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		-	43827440	A	-	43827440	7	5	8	1	0	1	0	1	0	0	0	0	12417	217	8	0	571	0	PPIP5K1	15	43827440	Frame_Shift_Del	DEL	A	TCGA-KL-8330-01A-11D-2310-10		43827440	58703952	62	604											
MYO5C	55930	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	52562050	52562050	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtataattaaattcttcGgcactccctgaaatcaaaaa	4	9	2	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	52562050	G	A	52562050	2	1	8	1	0	0	0	0	0	0	0	1	10158	1103	39	1		1	MYO5C	15	52562050	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	8734610	52562050	49969342	63	605											
WHAMM	123720	mdanderson.org	37	chr15	83478545	83478545	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggagggcctcttcgccgagCccgagaggcaccggctgcgc	17	15	1	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	83478545	C	G	83478545	3	3	8	1	0	0	0	0	1	0	0	0	17467	739	26	5	69	5	WHAMM	15	83478545	Missense_Mutation	SNP	C	TCGA-KL-8330-01A-11D-2310-10	30916495	83478545	19052847	64	606											
SULT1A1	6817	mdanderson.org	37	chr16	28620121	28620121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcaaagtacttgatgagcGggacccccttcacgtactcc	9	14	1	2	rs200542791	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	28620121	G	A	28620121	3	1	8	1	0	0	0	0	1	0	0	0	15472	1116	39	1	859	1	SULT1A1	16	28620121	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		28620121	61734632	65	607											
NECAB2	54550	broad.mit.edu;mdanderson.org	37	chr16	84024120	84024120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatgagggtgggagcaacGtggaccagtttgtgacccgc	15	8	0	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	84024120	G	A	84024120	3	1	8	1	0	0	0	0	1	0	0	0	10384	1145	40	1	503	1	NECAB2	16	84024120	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	55403999	84024120	6330633	66	608											
CACNB1	782	ucsc.edu	37	chr17	37331681	37331681	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggggtcagtctccatgTccacacatgagtctcccagc	10	14	3	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		C	37331681	T	C	37331681	3	2	8	1	0	0	0	0	1	0	0	0	2577	1667	58	2	238	2	CACNB1	17	37331681	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10		37331681	43863529	67	609											
RNF213	57674	ucsc.edu	37	chr17	78326830	78326830	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcatgtcaccatcagccAgctgttcgcgcccggagact	11	15	2	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	78326830	A	G	78326830	3	3	8	1	0	0	0	0	1	0	0	0	13572	188	7	2	10839	2	RNF213	17	78326830	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	40995149	78326830	2868380	68	610											
MIB1	57534	broad.mit.edu	37	chr18	19379923	19379923	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggaagatttgcttaaaagAccagatgtggatgtgagcat	13	4	0	4	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	19379923	A	G	19379923	2	3	8	1	0	0	0	0	0	0	0	1	9643	272	10	2		2	MIB1	18	19379923	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10		19379923	58697325	69	611											
ABCA7	10347	ucsc.edu	37	chr19	1047002	1047002	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttcctgctcagcgccgcActgctggttctggtgctcaa	10	16	3	0	rs3752234	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	1047002	A	G	1047002	2	3	8	1	0	0	0	0	0	0	0	1	37	146	6	2		2	ABCA7	19	1047002	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10		1047002	58081981	70	612											
MUC16	94025	mdanderson.org	37	chr19	9054242	9054242	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttaaacctacctttaggActggcaggcgaagtggatgt	12	7	0	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	9054242	A	G	9054242	2	3	8	1	0	0	0	0	0	0	0	1	10051	272	10	2		2	MUC16	19	9054242	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	8007240	9054242	50074741	71	613											
PSG2	5670	mdanderson.org	37	chr19	43585274	43585274	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgtaccagatgtagccAgtaagattctggggcaaatt	10	8	1	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	43585274	A	G	43585274	2	3	8	1	0	0	0	0	0	0	0	1	12744	175	7	2		2	PSG2	19	43585274	Silent	SNP	A	TCGA-KL-8330-01A-11D-2310-10	34531032	43585274	15543709	72	614											
ELSPBP1	64100	mdanderson.org;bcgsc.ca	37	chr19	48525507	48525507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	attattttaactgcactaacGaaggatcaaaggagaacctt	7	7	1	1	rs2303690	byfrequency	TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	48525507	G	A	48525507	3	1	8	1	0	0	0	0	1	0	0	0	5122	1059	37	1	613	1	ELSPBP1	19	48525507	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	4940233	48525507	10603476	73	615											
ZNF415	55786	broad.mit.edu	37	chr19	53619570	53619570	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaaattatcctcacccagGgagaccaggttcctgtagtt	9	10	1	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	53619570	G	T	53619570	2	4	8	1	0	0	0	0	0	0	0	1	17997	1219	43	5		5	ZNF415	19	53619570	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10	5094063	53619570	5509413	74	616											
EPS8L1	54869	hgsc.bcm.edu;bcgsc.ca	37	chr19	55598783	55598783	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtacagccaggtcaccGtgcagcgctcgctgctggag	15	12	1	0	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	55598783	G	T	55598783	3	4	8	1	0	0	0	0	1	0	0	0	5234	1145	40	5	2187	5	EPS8L1	19	55598783	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	1979213	55598783	3530200	75	617											
B4GALT5	9334	ucsc.edu	37	chr20	48330133	48330133	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgccgggcgccacatagAcgaagtacagcagcgaggac	13	12	0	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	48330133	A	G	48330133	3	3	8	1	0	0	0	0	1	0	0	0	1278	275	10	2	1107	2	B4GALT5	20	48330133	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10		48330133	14695387	76	618											
SLCO4A1	28231	broad.mit.edu	37	chr20	61292501	61292501	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcgagcaacccggacttTgggaaaaccatcagagacct	12	11	1	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	61292501	T	G	61292501	3	3	8	1	0	0	0	0	1	0	0	0	14827	1809	63	5	1109	5	SLCO4A1	20	61292501	Missense_Mutation	SNP	T	TCGA-KL-8330-01A-11D-2310-10	12962368	61292501	1733019	77	619											
GSC2	2928	hgsc.bcm.edu;mdanderson.org	37	chr22	19137290	19137290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgcagctgctcttcgctGaagatggtgcggtggcgcct	15	12	1	2	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	19137290	G	A	19137290	2	1	8	1	0	0	0	0	0	0	0	1	6873	1281	45	4		4	GSC2	22	19137290	Silent	SNP	G	TCGA-KL-8330-01A-11D-2310-10		19137290	32167276	78	620											
DMD	1756	broad.mit.edu;bcgsc.ca	37	chrX	32408279	32408279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaactgatctcatgacttGtcaaatcagattggattttc	6	8	3	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		T	32408279	G	T	32408279	3	4	8	1	0	0	0	0	1	0	0	0	4617	1377	48	5	7148	5	DMD	23	32408279	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10		32408279	122862281	79	621											
THOC2	57187	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	122759902	122759902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtagaaattttgtgatgGtctcatttttggtagattct	10	4	2	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		A	122759902	G	A	122759902	3	1	8	1	0	0	0	0	1	0	0	0	15969	1261	44	3	1919	3	THOC2	23	122759902	Missense_Mutation	SNP	G	TCGA-KL-8330-01A-11D-2310-10	90351623	122759902	32510658	80	622											
RBMX	27316	hgsc.bcm.edu	37	chrX	135956574	135956574	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttccaccataagatggCgggggccctcgtgtaggtgg	15	11	0	1	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	135956574	C	G	135956574	2	3	8	1	0	0	0	0	0	0	0	1	13243	755	27	5		5	RBMX	23	135956574	Silent	SNP	C	TCGA-KL-8330-01A-11D-2310-10	13196672	135956574	19313986	81	623											
MTM1	4534	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	149764981	149764981	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgtctcgagatggagtcaAtcgagatctcactgaggctg	13	9	3	3	novel		TCGA-KL-8330-01A-11D-2310-10	TCGA-KL-8330-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	09537dce-c797-4b60-962a-d4c3cd6ab00a	1d82038a-3a67-4b82-8e8d-5ba2c855b563		G	149764981	A	G	149764981	3	3	8	1	0	0	0	0	1	0	0	0	10015	101	4	4	89	4	MTM1	23	149764981	Missense_Mutation	SNP	A	TCGA-KL-8330-01A-11D-2310-10	13808407	149764981	5505579	82	624											
C1orf177	163747	hgsc.bcm.edu	37	chr1	55273584	55273584	+	Frame_Shift_Del	DEL	C	C	-													gcaaaagctgggccccggctCctacaacctcaaagacttct					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		-	55273584	C	-	55273584	7	5	9	1	0	1	0	1	0	0	0	0	2036	855	30	0	394	0	C1orf177	1	55273584	Frame_Shift_Del	DEL	C	TCGA-KL-8331-01A-11D-2310-10		55273584	193977037	1	625											
PDE4DIP	9659	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	144931626	144931626	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaaagcagaacctggagaTtgagcttggacgccgtgtgg	16	8	0	3	rs79158320	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	144931626	T	C	144931626	3	2	9	1	0	0	0	0	1	0	0	0	11722	1493	52	4	7616	4	PDE4DIP	1	144931626	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	89658042	144931626	104318995	2	626											
DTL	51514	ucsc.edu	37	chr1	212254059	212254059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccacggtgggttgggccTctcagaagaaaaaagagtca	12	8	2	3	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	212254059	T	C	212254059	3	2	9	1	0	0	0	0	1	0	0	0	4824	1551	54	2	1278	2	DTL	1	212254059	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	67322433	212254059	36996562	3	627											
POTEF	728378	hgsc.bcm.edu;mdanderson.org	37	chr2	130832597	130832597	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatctgggtcatcttctcGcggttggccttagggttcag	13	9	5	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	130832597	G	A	130832597	2	1	9	1	0	0	0	0	0	0	0	1	12345	1074	38	1		1	POTEF	2	130832597	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		130832597	112366776	4	628											
SCN2A	6326	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	166211041	166211041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgtagaaaaatatgtcGtggatgaaagtgattacatg	12	3	0	3	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	166211041	G	A	166211041	3	1	9	1	0	0	0	0	1	0	0	0	14013	1145	40	1	3417	1	SCN2A	2	166211041	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	35378444	166211041	76988332	5	629											
MUC4	4585	mdanderson.org	37	chr3	195506398	195506398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagggctggtgacaGgaagaggggtggcgtgacct	20	6	0	4	rs74573747		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	195506398	G	T	195506398	3	4	9	1	0	0	0	0	1	0	0	0	10056	1000	35	5		5	MUC4	3	195506398	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		195506398	2516032	6	630											
ZFYVE28	57732	ucsc.edu;mdanderson.org	37	chr4	2307125	2307125	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gagagtggcccctcagggggGagaggggcagagagggcagg	23	7	1	3	rs143836367	byfrequency;alternate_allele	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	2307125	G	A	2307125	2	1	9	1	0	0	0	0	0	0	0	1	17775	1161	41	3		3	ZFYVE28	4	2307125	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		2307125	188847151	7	631											
FGG	2266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	155529663	155529663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccactcttaatgcatatGggatggcagactgtgtgctt	11	8	1	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	155529663	G	A	155529663	3	1	9	1	0	0	0	0	1	0	0	0	5919	1348	47	4	586	4	FGG	4	155529663	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	153222538	155529663	35624613	8	632											
LMBRD2	92255	broad.mit.edu	37	chr5	36123063	36123063	+	Frame_Shift_Del	DEL	A	A	-													ttcctgatactctgtagggcActaaaaaaaaaaaaaagtag					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		-	36123063	A	-	36123063	7	5	9	1	0	1	0	1	0	0	0	0	8907	173	6	0	1308	0	LMBRD2	5	36123063	Frame_Shift_Del	DEL	A	TCGA-KL-8331-01A-11D-2310-10		36123063	144792197	9	633											
SLC30A5	64924	broad.mit.edu	37	chr5	68390134	68390134	+	Frame_Shift_Del	DEL	G	G	-													ccggccccggcggcggcggcGgccttgggccggtggacgta					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		-	68390134	G	-	68390134	7	5	9	1	0	1	0	1	0	0	0	0	14656	1116	39	0	54	0	SLC30A5	5	68390134	Frame_Shift_Del	DEL	G	TCGA-KL-8331-01A-11D-2310-10	32267071	68390134	112525126	10	634											
HAPLN1	1404	bcgsc.ca	37	chr5	82937410	82937410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctcagtaggactgcagcGccttcttggcctagagatgg	13	11	2	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	82937410	G	A	82937410	3	1	9	1	0	0	0	0	1	0	0	0	7012	1087	38	1	98	1	HAPLN1	5	82937410	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	14547276	82937410	97977850	11	635											
DHX16	8449	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	30623374	30623374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctcctctgaacagctgtaCctgggacaggaaggggaaag	13	9	2	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	30623374	C	T	30623374	2	4	9	1	0	0	0	0	0	0	0	1	4539	521	18	3		3	DHX16	6	30623374	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		30623374	140491693	12	636											
MUC21	394263	mdanderson.org	37	chr6	30954600	30954600	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaactctgagtccagAacgacctccaatggggctgg	11	14	1	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	30954600	A	C	30954600	3	2	9	1	0	0	0	0	1	0	0	0	10055	243	9	5	654	5	MUC21	6	30954600	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10	331226	30954600	140160467	13	637											
C4A	720	broad.mit.edu	37	chr6	31963559	31963559	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggcttggttgtcacgggAcagcagcacctggtgagctt	15	10	1	1	rs2258218	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	31963559	A	G	31963559	2	3	9	1	0	0	0	0	0	0	0	1	2268	275	10	2		2	C4A	6	31963559	Silent	SNP	A	TCGA-KL-8331-01A-11D-2310-10	1008959	31963559	139151508	14	638											
TNXB	7148	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	32052298	32052298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgatgacggccgagcGctggggtccttccacgggca	18	11	0	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	32052298	G	A	32052298	3	1	9	1	0	0	0	0	1	0	0	0	16450	1087	38	1	11524	1	TNXB	6	32052298	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	88739	32052298	139062769	15	639											
CDKN1A	1026	broad.mit.edu;hgsc.bcm.edu	37	chr6	36652011	36652012	+	Frame_Shift_Ins	INS	-	-	C													ggcgggctgcatccaggaggINScccgtgagcgatggaacttc					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	36652012	-	C	36652011	7	5	9	1	0	1	1	0	0	0	0	0	3187	1203	42	0	135	0	CDKN1A	6	36652011	Frame_Shift_Ins	INS	-	TCGA-KL-8331-01A-11D-2310-10	4599713	36652011	134463056	16	640	18	2									
CDKN1A	1026	bcgsc.ca	37	chr6	36652012	36652013	+	Frame_Shift_Ins	INS	-	-	C													gcgggctgcatccaggaggcINSccgtgagcgatggaacttcg					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	36652013	-	C	36652012	7	5	9	1	0	1	1	0	0	0	0	0	3187	739	26	0	136	0	CDKN1A	6	36652012	Frame_Shift_Ins	INS	-	TCGA-KL-8331-01A-11D-2310-10	1	36652012	134463055	17	641	18	2									
BCLAF1	9774	hgsc.bcm.edu	37	chr6	136596668	136596668	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atactaaacatactaagcatAcctttaacatgatgaaccaa	3	9	0	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	136596668	A	C	136596668	5	2	9	1	0	0	0	0	0	0	1	0	1387	405	14	5	940	5	BCLAF1	6	136596668	Splice_Site	SNP	A	TCGA-KL-8331-01A-11D-2310-10	99944656	136596668	34518399	18	642											
SLC29A4	222962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	5342510	5342510	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctacagcctcacccgcgaCgctcacggcagctgcctgca	9	19	2	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	5342510	C	T	5342510	2	4	9	1	0	0	0	0	0	0	0	1	14635	535	19	1		1	SLC29A4	7	5342510	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		5342510	153796153	19	643											
GRM3	2913	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr7	86479790	86479790	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atcctgtttcaaccccagaaGaatgttgtcacacacagact	6	12	2	3	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	86479790	G	T	86479790	3	4	9	1	0	0	0	0	1	0	0	0	6856	933	33	5	2510	5	GRM3	7	86479790	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	81137280	86479790	72658873	20	644											
PON3	5446	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	95024006	95024006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttctactggctccacttctCgagaggcattcaccctttct	7	14	4	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	95024006	C	T	95024006	3	4	9	1	0	0	0	0	1	0	0	0	12330	884	31	1	1001	1	PON3	7	95024006	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	8544216	95024006	64114657	21	645											
PTPRZ1	5803	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	121699937	121699937	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaggccaggagtctttgctGacattgtaagtaacaaggca	12	7	1	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	121699937	G	T	121699937	3	4	9	1	0	0	0	0	1	0	0	0	12906	1290	45	5	6916	5	PTPRZ1	7	121699937	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	26675931	121699937	37438726	22	646											
STRA8	346673	broad.mit.edu	37	chr7	134925328	134925328	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacagagcaacaccccagCtgccagcacagctgcaggag	11	14	0	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	134925328	C	A	134925328	3	1	9	1	0	0	0	0	1	0	0	0	15423	796	28	5	124	5	STRA8	7	134925328	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	13225391	134925328	24213335	23	647											
ABCF2	10061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	150921103	150921103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacaatgcaagggtgtcttGtcactagggggcatctctcg	12	10	3	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	150921103	G	T	150921103	3	4	9	1	0	0	0	0	1	0	0	0	66	1368	48	5	1495	5	ABCF2	7	150921103	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	15995775	150921103	8217560	24	648											
RP1L1	94137	hgsc.bcm.edu;ucsc.edu	37	chr8	10467237	10467237	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcacttgggtccgtctcgctGagatgactagggggctctgt	15	10	2	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	10467237	G	T	10467237	2	4	9	1	0	0	0	0	0	0	0	1	13628	1277	45	5		5	RP1L1	8	10467237	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		10467237	135896785	25	649											
KIF13B	23303	ucsc.edu	37	chr8	29035051	29035051	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgttgctcgttcactgccAgctaaatccaccaggctgag	9	13	1	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	29035051	A	G	29035051	2	3	9	1	0	0	0	0	0	0	0	1	8336	175	7	2		2	KIF13B	8	29035051	Silent	SNP	A	TCGA-KL-8331-01A-11D-2310-10	18567814	29035051	117328971	26	650											
TMC1	117531	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	75309495	75309495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtggaagataagctacctcGaagagagagcttgagaccaa	13	7	0	4	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	75309495	G	A	75309495	3	1	9	1	0	0	0	0	1	0	0	0	16088	1058	37	1	111	1	TMC1	9	75309495	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		75309495	65903936	27	651											
CRB2	286204	ucsc.edu;bcgsc.ca	37	chr9	126137497	126137497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcccccctccctctccaggTgtcaggtccccactctcccc	6	23	3	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	126137497	T	C	126137497	3	2	9	1	0	0	0	0	1	0	0	0	3878	1710	59	2	3554	2	CRB2	9	126137497	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	50828002	126137497	15075934	28	652											
MLLT10	8028	bcgsc.ca	37	chr10	21884308	21884308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tattccagaggtacaatttgCcaatgtttccacaatggaac	7	9	0	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	21884308	C	T	21884308	3	4	9	1	0	0	0	0	1	0	0	0	9703	739	26	3	358	3	MLLT10	10	21884308	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10		21884308	113650439	29	653											
CHST3	9469	mdanderson.org	37	chr10	73767859	73767859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgcggagctggggctgcGgcagcccgcctggctgcggg	20	14	0	0	rs3740129	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	73767859	G	A	73767859	3	1	9	1	0	0	0	0	1	0	0	0	3434	1116	39	1	1076	1	CHST3	10	73767859	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	51883551	73767859	61766888	30	654											
MARCH5	54708	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	94071001	94071001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaccaggcctgtctacaaCgctgggtggatgaaaagcaa	11	10	2	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	94071001	C	T	94071001	3	4	9	1	0	0	0	0	1	0	0	0	9381	536	19	1	151	1	MARCH5	10	94071001	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	20303142	94071001	41463746	31	655											
DMBT1	1755	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr10	124399735	124399735	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctaataacaccatccaggtCgaggaagtccagtatggcaa	10	10	0	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	124399735	C	T	124399735	2	4	9	1	0	0	0	0	0	0	0	1	4614	871	31	1		1	DMBT1	10	124399735	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	30328734	124399735	11135012	32	656											
KCNQ1	3784	ucsc.edu	37	chr11	2797283	2797283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcaaggagctgcagaggAggtgggcacggccaaacggc	17	10	1	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	2797283	A	G	2797283	3	3	9	1	0	0	0	0	1	0	0	0	8143	318	11	2	1743	2	KCNQ1	11	2797283	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10		2797283	132209233	33	657											
CDC42BPG	55561	ucsc.edu	37	chr11	64601933	64601933	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgggcctcctgcacctgTgtcagccgctcctgcaggcc	12	17	1	0	rs7933683	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	64601933	T	C	64601933	2	2	9	1	0	0	0	0	0	0	0	1	3103	1683	59	2		2	CDC42BPG	11	64601933	Silent	SNP	T	TCGA-KL-8331-01A-11D-2310-10	61804650	64601933	70404583	34	658											
SLC6A13	6540	ucsc.edu	37	chr12	332318	332318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtaaacccaagccacacagAgggactcgaagatggccacg	11	13	0	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	332318	A	G	332318	3	3	9	1	0	0	0	0	1	0	0	0	14774	304	11	2	430	2	SLC6A13	12	332318	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10		332318	133519577	35	659											
AICDA	57379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	8759502	8759502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagtgaaaaggatgtagCactgtcacgcctcttcacta	9	11	3	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	8759502	C	T	8759502	3	4	9	1	0	0	0	0	1	0	0	0	422	710	25	4	497	4	AICDA	12	8759502	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	8427184	8759502	125092393	36	660											
TAS2R31	259290	bcgsc.ca	37	chr12	11183042	11183042	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctcctttcacccagtacCtcacttgccgcaaaactgaa	4	16	3	1	rs3759246	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	11183042	C	G	11183042	3	3	9	1	0	0	0	0	1	0	0	0	15675	681	24	5	40	5	TAS2R31	12	11183042	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	2423540	11183042	122668853	37	661											
TAS2R43	259289	mdanderson.org	37	chr12	11244369	11244369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttcaaattcttttgtccGcacaatctcattcatgttta	3	11	4	0	rs200586631	alternate_allele	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	11244369	G	A	11244369	3	1	9	1	0	0	0	0	1	0	0	0	15682	1086	38	1	473	1	TAS2R43	12	11244369	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	61327	11244369	122607526	38	662											
TAS2R30	259293	broad.mit.edu	37	chr12	11286136	11286137	+	Frame_Shift_Ins	INS	-	-	A													gaaagtaaatggcacataacINSagaagaaaggaggtcacagt					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	11286137	-	A	11286136	7	5	9	1	0	1	1	0	0	0	0	0	15674	465	17	0	255	0	TAS2R30	12	11286136	Frame_Shift_Ins	INS	-	TCGA-KL-8331-01A-11D-2310-10	41767	11286136	122565759	39	663											
SOAT2	8435	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	53517645	53517645	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtacgcacggcggcactgCcccttaccccaggtaagaga	12	14	0	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	53517645	C	T	53517645	2	4	9	1	0	0	0	0	0	0	0	1	15009	747	26	3		3	SOAT2	12	53517645	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	42231509	53517645	80334250	40	664											
ATP8A2	51761	bcgsc.ca	37	chr13	26133897	26133897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagagagccgtcttcagatgActtctggtaagtagattcta	10	7	4	4	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	26133897	A	G	26133897	3	3	9	1	0	0	0	0	1	0	0	0	1197	275	10	2	1449	2	ATP8A2	13	26133897	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10		26133897	89035981	41	665											
PAN3	255967	hgsc.bcm.edu;ucsc.edu	37	chr13	28840991	28840991	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagcaaagatgatctgccAtattgccttcggaggataca	9	9	1	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	28840991	A	G	28840991	2	3	9	1	0	0	0	0	0	0	0	1	11494	204	8	4		4	PAN3	13	28840991	Silent	SNP	A	TCGA-KL-8331-01A-11D-2310-10	2707094	28840991	86328887	42	666											
EAPP	55837	bcgsc.ca	37	chr14	34998579	34998579	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacccccttctctgtgcaTcaacccaggcctgatctctg	6	17	3	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	34998579	T	C	34998579	3	2	9	1	0	0	0	0	1	0	0	0	4914	1435	50	4	414	4	EAPP	14	34998579	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10		34998579	72350961	43	667											
PSMC6	5706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	53175080	53175080	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgaaaagtctgaaaatgatCtgaaggccctacagagtgtt	10	6	2	5	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	53175080	C	G	53175080	3	3	9	1	0	0	0	0	1	0	0	0	12780	912	32	5	187	5	PSMC6	14	53175080	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	18176501	53175080	54174460	44	668											
EIF2AK4	440275	ucsc.edu	37	chr15	40268998	40268998	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgggctccagcgatgacgaGgacgacgacgaggacgagca	16	12	0	1	rs200699205	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	40268998	G	C	40268998	3	2	9	1	0	0	0	0	1	0	0	0	5036	991	35	5	2248	5	EIF2AK4	15	40268998	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		40268998	62262394	45	669											
MEF2A	4205	mdanderson.org	37	chr15	100252741	100252741	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcagcagcagcagcAgccgccgccaccaccgcagc	12	19	0	0	rs199811207		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	100252741	A	C	100252741	3	2	9	1	0	0	0	0	1	0	0	0	9532	188	7	5	1463	5	MEF2A	15	100252741	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10	59983743	100252741	2278651	46	670											
TNRC6A	27327	broad.mit.edu	37	chr16	24817998	24817998	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accatctcagcagcagccacTccatcagccagccatgaagt	7	16	2	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	24817998	T	C	24817998	3	2	9	1	0	0	0	0	1	0	0	0	16444	1551	54	2	4499	2	TNRC6A	16	24817998	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10		24817998	65536755	47	671											
SETD1A	9739	hgsc.bcm.edu;ucsc.edu	37	chr16	30991933	30991933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggacaagtacctggaCgtgtgcccagtctcggcccg	14	12	1	1	rs56788559	bycluster;byfrequency;by1000genomes	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	30991933	C	T	30991933	2	4	9	1	0	0	0	0	0	0	0	1	14227	535	19	1		1	SETD1A	16	30991933	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	6173935	30991933	59362820	48	672											
NOB1	28987	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	69786144	69786144	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccatcctcttgatttacCttctgtggttcttgttttag	6	10	3	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	69786144	C	T	69786144	2	4	9	1	0	0	0	0	0	0	0	1	10590	695	24	4		4	NOB1	16	69786144	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10	38794211	69786144	20568609	49	673											
CPNE7	27132	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	89650494	89650494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagctctccttccgggccaGgaagctggacgacaaggtga	15	11	1	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	89650494	G	A	89650494	3	1	9	1	0	0	0	0	1	0	0	0	3846	1000	35	4	738	4	CPNE7	16	89650494	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	19864350	89650494	704259	50	674											
TRIM16	10626	ucsc.edu	37	chr17	15539560	15539560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaactgcatttcagccacCgctttgacctctgacaccga	6	16	2	2	rs9911397	bycluster;byfrequency;by1000genomes	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	15539560	C	T	15539560	2	4	9	1	0	0	0	0	0	0	0	1	16596	639	23	1		1	TRIM16	17	15539560	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		15539560	65655650	51	675											
AKAP10	11216	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	19823386	19823386	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggttcaggctcagattcTcggatgaattgccccaagtc	10	11	4	2	rs1049591		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	19823386	T	C	19823386	2	2	9	1	0	0	0	0	0	0	0	1	446	1538	54	2		2	AKAP10	17	19823386	Silent	SNP	T	TCGA-KL-8331-01A-11D-2310-10	4283826	19823386	61371824	52	676											
TRIM37	4591	ucsc.edu;bcgsc.ca	37	chr17	57153067	57153067	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcttgggttagagatgTcttctgacctgatgaaaaat	10	5	3	4	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	57153067	T	C	57153067	3	2	9	1	0	0	0	0	1	0	0	0	16616	1667	58	2	2345	2	TRIM37	17	57153067	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	37329681	57153067	24042143	53	677											
PTPRM	5797	ucsc.edu	37	chr18	8376084	8376084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagatcagacagtttcactTcactggctggccggatcatg	11	10	4	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	8376084	T	C	8376084	3	2	9	1	0	0	0	0	1	0	0	0	12898	1783	62	4	3310	4	PTPRM	18	8376084	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10		8376084	69701164	54	678											
MAPK4	5596	ucsc.edu	37	chr18	48248403	48248403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctcagggtgatgccttccTttgtcagcagcacctgggag	13	11	2	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	48248403	T	C	48248403	3	2	9	1	0	0	0	0	1	0	0	0	9357	1609	56	2	797	2	MAPK4	18	48248403	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	39872319	48248403	29828845	55	679											
ZNF676	163223	mdanderson.org	37	chr19	22363631	22363631	+	Silent	SNP	G	G	A													tgaattctcttatgttccatGagctttgaggacgagttgga					rs75683199	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	22363631	G	A	22363631	2	1	9	1	0	0	0	0	0	0	0	1	18188	1277	45	4		4	ZNF676	19	22363631	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10		22363631	36765352	56	680	19	2									
ZNF676	163223	mdanderson.org	37	chr19	22363634	22363634	+	Missense_Mutation	SNP	C	C	A													attctcttatgttccatgagCtttgaggacgagttggaagc					rs76456473	byfrequency	TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	22363634	C	A	22363634	3	1	9	1	0	0	0	0	1	0	0	0	18188	796	28	5	885	5	ZNF676	19	22363634	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	3	22363634	36765349	57	681	19	2									
IRGQ	126298	ucsc.edu	37	chr19	44099393	44099393	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcgggggcctcgagcgtcTccacatccttgtcgcacagc	11	17	1	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		C	44099393	T	C	44099393	3	2	9	1	0	0	0	0	1	0	0	0	7900	1551	54	2	1781	2	IRGQ	19	44099393	Missense_Mutation	SNP	T	TCGA-KL-8331-01A-11D-2310-10	21735759	44099393	15029590	58	682											
CD33	945	broad.mit.edu	37	chr19	51738423	51738423	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgcagggaaacaagagAccagagcaggagtggttcat	14	7	2	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		G	51738423	A	G	51738423	3	3	9	1	0	0	0	0	1	0	0	0	3034	275	10	2	775	2	CD33	19	51738423	Missense_Mutation	SNP	A	TCGA-KL-8331-01A-11D-2310-10	7639030	51738423	7390560	59	683											
IGLON5	402665	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	51828628	51828628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcattgtgaacatctcgtcGcctgtgacggtgaatgaggg	14	9	1	4	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	51828628	G	A	51828628	2	1	9	1	0	0	0	0	0	0	0	1	7656	1074	38	1		1	IGLON5	19	51828628	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10	90205	51828628	7300355	60	684											
CSNK2A1	1457	mdanderson.org	37	chr20	464702	464702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtccaaggggtgaagggGttggcactgaagaaatccct	16	7	0	3	rs61747403		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	464702	G	A	464702	3	1	9	1	0	0	0	0	1	0	0	0	3988	1261	44	3	100	3	CSNK2A1	20	464702	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10		464702	62560818	61	685											
NCOA3	8202	broad.mit.edu;bcgsc.ca	37	chr20	46266522	46266522	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtgtttcaaggaactaattCtctgggtaagaatgaactag	11	5	2	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	46266522	C	A	46266522	3	1	9	1	0	0	0	0	1	0	0	0	10309	913	32	5	2579	5	NCOA3	20	46266522	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	45801820	46266522	16758998	62	686											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	57768140	57768140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacatatccgcaggggcaaCgccagagccttggggaaatc	14	11	0	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	57768140	C	T	57768140	3	4	9	1	0	0	0	0	1	0	0	0	18288	536	19	1	2068	1	ZNF831	20	57768140	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	11501618	57768140	5257380	63	687											
GRIK1	2897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr21	30963507	30963507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacttgtctttgttgctgtcCgtcatgttaagcccactgtt	9	10	2	0	rs144528849		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	30963507	C	T	30963507	2	4	9	1	0	0	0	0	0	0	0	1	6831	639	23	1		1	GRIK1	21	30963507	Silent	SNP	C	TCGA-KL-8331-01A-11D-2310-10		30963507	17166388	64	688											
ARSF	416	broad.mit.edu	37	chrX	2986145	2986145	+	Frame_Shift_Del	DEL	A	A	-													gtattccaagctgcacaatgAggcccaggtaggtaaagcca					novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		-	2986145	A	-	2986145	7	5	9	1	0	1	0	1	0	0	0	0	995	295	11	0	6	0	ARSF	23	2986145	Frame_Shift_Del	DEL	A	TCGA-KL-8331-01A-11D-2310-10		2986145	152284415	65	689											
USP9X	8239	broad.mit.edu	37	chrX	41029423	41029423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattgagctctttgtgggcGgtgagctgatagatcctgca	13	7	1	4	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	41029423	G	A	41029423	3	1	9	1	0	0	0	0	1	0	0	0	17196	1116	39	1	2882	1	USP9X	23	41029423	Missense_Mutation	SNP	G	TCGA-KL-8331-01A-11D-2310-10	38043278	41029423	114241137	66	690											
PCDH19	57526	broad.mit.edu;mdanderson.org	37	chrX	99661925	99661925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgaccggggtgttgtcGttgacgtcgaggatgatgac	17	6	0	5	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	99661925	G	A	99661925	2	1	9	1	0	0	0	0	0	0	0	1	11593	1136	40	1		1	PCDH19	23	99661925	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10	58632502	99661925	55608635	67	691											
HS6ST2	90161	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	132091342	132091342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttgttggatttctcatcCatgttcccgacgctggggga	12	10	1	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	132091342	C	A	132091342	3	1	9	1	0	0	0	0	1	0	0	0	7429	594	21	5	1512	5	HS6ST2	23	132091342	Missense_Mutation	SNP	C	TCGA-KL-8331-01A-11D-2310-10	32429417	132091342	23179218	68	692											
PASD1	139135	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	150817086	150817086	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcttttttcctatttataGtagctctcaaggtcaaagag	6	8	3	1	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	150817086	G	A	150817086	5	1	9	1	0	0	0	0	0	0	1	0	11550	1043	36	4	659	4	PASD1	23	150817086	Splice_Site	SNP	G	TCGA-KL-8331-01A-11D-2310-10	18725744	150817086	4453474	69	693											
MAGEA10	4109	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	151303811	151303811	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagggaagcaacgaccgaGggggaggagcaggctatctg	19	7	1	0	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		A	151303811	G	A	151303811	2	1	9	1	0	0	0	0	0	0	0	1	9237	987	35	4		4	MAGEA10	23	151303811	Silent	SNP	G	TCGA-KL-8331-01A-11D-2310-10	486725	151303811	3966749	70	694											
ZNF185	7739	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	152091354	152091354	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgggagccaggagctcagGtgggtgccgagagctgactc	18	10	1	2	novel		TCGA-KL-8331-01A-11D-2310-10	TCGA-KL-8331-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7087a2b6-7fc4-45b0-8c48-248864f03deb	2ca67854-9fef-4b3e-a4e0-0432df5a5800		T	152091354	G	T	152091354	5	4	9	1	0	0	0	0	0	0	1	0	17857	1275	44	5	888	5	ZNF185	23	152091354	Splice_Site	SNP	G	TCGA-KL-8331-01A-11D-2310-10	787543	152091354	3179206	71	695											
AGRN	375790	broad.mit.edu	37	chr1	983491	983493	+	In_Frame_Del	DEL	TGA	TGA	-													gcgcctgccgtcctctgctgTgacccctcgggccccgcacc					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	983493	TGA	-	983491	7	5	10	1	0	1	0	1	0	0	0	0	397	1696	59	0	3941	0	AGRN	1	983491	In_Frame_Del	DEL	TGA	TCGA-KL-8332-01A-11D-2310-10		983491	248267130	1	696											
TMEM201	199953	ucsc.edu	37	chr1	9661448	9661448	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgggcagagccaccagAcgggcgtcgtggcactgggc	16	13	0	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	9661448	A	G	9661448	3	3	10	1	0	0	0	0	1	0	0	0	16230	275	10	2	910	2	TMEM201	1	9661448	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	8677957	9661448	239589173	2	697											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	22176895	22176895	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatggtgaccaggacagAggcctctagaggcacggagc	14	11	2	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	22176895	A	T	22176895	3	4	10	1	0	0	0	0	1	0	0	0	7491	304	11	5	6088	5	HSPG2	1	22176895	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	12515447	22176895	227073726	3	698											
SLC9A1	6548	bcgsc.ca	37	chr1	27436145	27436146	+	Frame_Shift_Ins	INS	-	-	A													gtgaaggctgcgatgaccccINSgtagaccacgcccacaagca					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	27436146	-	A	27436145	7	5	10	1	0	1	1	0	0	0	0	0	14807	652	23	0	1550	0	SLC9A1	1	27436145	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10	5259250	27436145	221814476	4	699											
SPOCD1	90853	ucsc.edu;bcgsc.ca	37	chr1	32280705	32280705	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagacccctggccggaccTcagcagcacctgcagcccgg	11	19	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	32280705	T	C	32280705	3	2	10	1	0	0	0	0	1	0	0	0	15178	1551	54	2	3480	2	SPOCD1	1	32280705	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	4844560	32280705	216969916	5	700											
GJB3	2707	broad.mit.edu	37	chr1	35250386	35250386	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactggaagacactccaggCcctactgagcggtgtgaaca	13	11	0	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	35250386	C	A	35250386	3	1	10	1	0	0	0	0	1	0	0	0	6465	739	26	5	25	5	GJB3	1	35250386	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	2969681	35250386	214000235	6	701											
DOCK7	85440	hgsc.bcm.edu;bcgsc.ca	37	chr1	63005305	63005305	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaatgcaaggcttgtatTgagtctctcaaccatttctg	8	8	3	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	63005305	T	A	63005305	3	1	10	1	0	0	0	0	1	0	0	0	4729	1812	63	5	3307	5	DOCK7	1	63005305	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	27754919	63005305	186245316	7	702											
FAM73A	374986	ucsc.edu	37	chr1	78269049	78269049	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaactatgctaatggaggActtttcagtaaatattcagg	9	5	2	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	78269049	A	G	78269049	2	3	10	1	0	0	0	0	0	0	0	1	5666	262	10	2		2	FAM73A	1	78269049	Silent	SNP	A	TCGA-KL-8332-01A-11D-2310-10	15263744	78269049	170981572	8	703											
PTGFRN	5738	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	117491967	117491967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaccctacctggctcccGcgtgttggcgcggcttgacc	12	17	0	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	117491967	G	A	117491967	3	1	10	1	0	0	0	0	1	0	0	0	12840	1087	38	1	1000	1	PTGFRN	1	117491967	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	39222918	117491967	131758654	9	704											
BCAN	63827	broad.mit.edu	37	chr1	156622489	156622489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggtccctcgaggagagagcGaggagacaggaagctccgag	18	9	0	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	156622489	G	A	156622489	3	1	10	1	0	0	0	0	1	0	0	0	1349	1059	37	1	1773	1	BCAN	1	156622489	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	39130522	156622489	92628132	10	705											
FAM82A1	151393	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	38224599	38224599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagaaaaaaatggctgctaCtctgtttggaaaaataccat	8	6	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	38224599	C	T	38224599	3	4	10	1	0	0	0	0	1	0	0	0	5679	565	20	4	2006	4	FAM82A1	2	38224599	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		38224599	204974774	11	706											
AAK1	22848	ucsc.edu	37	chr2	69732801	69732801	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccaagcttctcgggatgTttgcctggagagacaaaaca	10	11	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	69732801	T	C	69732801	2	2	10	1	0	0	0	0	0	0	0	1	16	1722	60	2		2	AAK1	2	69732801	Silent	SNP	T	TCGA-KL-8332-01A-11D-2310-10	31508202	69732801	173466572	12	707											
RPIA	22934	ucsc.edu	37	chr2	88991370	88991370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgcacagtctgggaccCgtggcggtgctggcaacaca	16	12	1	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	88991370	C	T	88991370	3	4	10	1	0	0	0	0	1	0	0	0	13648	652	23	1	156	1	RPIA	2	88991370	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	19258569	88991370	154208003	13	708											
FAM168B	130074	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	131813240	131813240	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgctggtgggggaacaggaCactttgtaaggtgtgccagg	17	8	0	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	131813240	C	T	131813240	2	4	10	1	0	0	0	0	0	0	0	1	5529	465	17	4		4	FAM168B	2	131813240	Silent	SNP	C	TCGA-KL-8332-01A-11D-2310-10	42821870	131813240	111386133	14	709											
PLA2R1	22925	broad.mit.edu	37	chr2	160807853	160807853	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gggagttaggatacctacatCtgtggtgaacagtccaatcc	11	9	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	160807853	C	T	160807853	3	4	10	1	0	0	0	0	1	0	0	0	12090	913	32	4	889	4	PLA2R1	2	160807853	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	28994613	160807853	82391520	15	710											
PECR	55825	broad.mit.edu;bcgsc.ca	37	chr2	216946400	216946400	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggccccgccggtgacgAtggccacttggccctgcagc	14	17	0	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	216946400	A	C	216946400	3	2	10	1	0	0	0	0	1	0	0	0	11796	333	12	5	878	5	PECR	2	216946400	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	56138547	216946400	26252973	16	711											
CAV3	859	broad.mit.edu	37	chr3	8775578	8775578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgatgatggcagaagagCacacagatctcgaggcccag	13	11	1	4	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	8775578	C	T	8775578	3	4	10	1	0	0	0	0	1	0	0	0	2720	710	25	4	18	4	CAV3	3	8775578	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		8775578	189246852	17	712											
GOLGA4	2803	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	37360554	37360554	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctatttggctcattttcagAaatcctcagaagaacaaatt	5	8	4	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	37360554	A	T	37360554	4	4	10	1	0	0	0	0	0	1	0	0	6611	260	9	5	1530	5	GOLGA4	3	37360554	Nonsense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	28584976	37360554	160661876	18	713											
UROC1	131669	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	126220079	126220079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accaaagagccaccacgttgCcatggtaaccaaggctgagc	10	13	0	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	126220079	C	T	126220079	3	4	10	1	0	0	0	0	1	0	0	0	17134	739	26	3	1127	3	UROC1	3	126220079	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	88859525	126220079	71802351	19	714											
LARP7	51574	hgsc.bcm.edu	37	chr4	113565882	113565883	+	Frame_Shift_Ins	INS	-	-	A													aagaagaaagcactgaaaagINSaaaaaagaagttgaaaaaaa					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	113565883	-	A	113565882	7	5	10	1	0	1	1	0	0	0	0	0	8695	933	33	0	59	0	LARP7	4	113565882	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10		113565882	77588394	20	715	20	2									
LARP7	51574	bcgsc.ca	37	chr4	113565883	113565884	+	Frame_Shift_Ins	INS	-	-	A													agaagaaagcactgaaaagaINSaaaaagaagttgaaaaaaag					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	113565884	-	A	113565883	7	5	10	1	0	1	1	0	0	0	0	0	8695	247	9	0	60	0	LARP7	4	113565883	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10	1	113565883	77588393	21	716	20	2									
FGA	2243	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	155506759	155506759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatgatcggcttcacttcCggcctcatctgccattttat	6	13	4	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	155506759	C	T	155506759	3	4	10	1	0	0	0	0	1	0	0	0	5879	661	23	1	830	1	FGA	4	155506759	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	41940876	155506759	35647517	22	717											
ADAM29	11086	mdanderson.org	37	chr4	175899001	175899001	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caacctcgggtgatgccttcTcagagtcaacctcctgtgat	9	13	2	3	rs111240604	byfrequency	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	175899001	T	C	175899001	2	2	10	1	0	0	0	0	0	0	0	1	247	1538	54	2		2	ADAM29	4	175899001	Silent	SNP	T	TCGA-KL-8332-01A-11D-2310-10	20392242	175899001	15255275	23	718											
SDHA	6389	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	256467	256467	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtcactctggaatatagaCccgtgatcgacaaaactttg	9	9	2	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	256467	C	G	256467	3	3	10	1	0	0	0	0	1	0	0	0	14060	507	18	5	1985	5	SDHA	5	256467	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		256467	180658793	24	719											
SLC6A19	340024	bcgsc.ca	37	chr5	1208864	1208864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactcctcccattgcaggagCcttcatgatcccgttcctca	7	16	2	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	1208864	C	T	1208864	3	4	10	1	0	0	0	0	1	0	0	0	14780	739	26	3	212	3	SLC6A19	5	1208864	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	952397	1208864	179706396	25	720											
VARS2	57176	broad.mit.edu	37	chr6	30889464	30889464	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggggcagagctgaccctggaGaggggtgagtgcctgagctg	20	8	0	5	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	30889464	G	C	30889464	3	2	10	1	0	0	0	0	1	0	0	0	17230	933	33	5	1891	5	VARS2	6	30889464	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10		30889464	140225603	26	721											
MUC21	394263	mdanderson.org	37	chr6	30954932	30954932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacaacctccagtggggCcagcacagccaccaactctg	9	17	1	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	30954932	C	T	30954932	3	4	10	1	0	0	0	0	1	0	0	0	10055	739	26	3	986	3	MUC21	6	30954932	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	65468	30954932	140160135	27	722											
HLA-DRB1	3123	mdanderson.org	37	chr6	32551996	32551996	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggctgttccagtactcaGcgtcaggccgccccagctcc	10	17	3	0	rs1059584	byfrequency	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	32551996	G	T	32551996	3	4	10	1	0	0	0	0	1	0	0	0	7266	971	34	5	560	5	HLA-DRB1	6	32551996	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	1597064	32551996	138563071	28	723											
KIAA0408	9729	bcgsc.ca	37	chr6	127771252	127771253	+	Frame_Shift_Ins	INS	-	-	T													ccaaaaaccctacttttgatINSttttttgttgctttttgttc					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	127771253	-	T	127771252	7	5	10	1	0	1	1	0	0	0	0	0	8235	1490	52	0	1719	0	KIAA0408	6	127771252	Frame_Shift_Ins	INS	-	TCGA-KL-8332-01A-11D-2310-10	95219256	127771252	43343815	29	724											
DLX6	1750	broad.mit.edu	37	chr7	96635389	96635391	+	In_Frame_Del	DEL	CAG	CAG	-													agcagcagcagcagcagcaaCagcagcagcagcagcagcag					rs5885995	alternate_allele	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	96635391	CAG	-	96635389	7	5	10	1	0	1	0	1	0	0	0	0	4612	479	17	0	102	0	DLX6	7	96635389	In_Frame_Del	DEL	CAG	TCGA-KL-8332-01A-11D-2310-10		96635389	62503274	30	725											
MLL3	58508	mdanderson.org	37	chr7	151932923	151932923	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaggtaatacaacagctccGattccacttttcagctttga	6	12	1	1	rs2740237	bycluster;by2hit2allele;byhapmap	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	151932923	G	A	151932923	2	1	10	1	0	0	0	0	0	0	0	1	9699	1048	37	1		1	MLL3	7	151932923	Silent	SNP	G	TCGA-KL-8332-01A-11D-2310-10	55297534	151932923	7205740	31	726											
PTPDC1	138639	ucsc.edu	37	chr9	96857597	96857597	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttccttttcttttttcctAgtttacttctacaatttcgg	3	9	2	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	96857597	A	G	96857597	5	3	10	1	0	0	0	0	0	0	1	0	12863	434	15	2	713	2	PTPDC1	9	96857597	Splice_Site	SNP	A	TCGA-KL-8332-01A-11D-2310-10		96857597	44355834	32	727											
FAS	355	bcgsc.ca	37	chr10	90774008	90774008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgacaatgtccaagacaCagcagaacagaaagttcaac	8	9	1	4	rs121913081		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	90774008	C	T	90774008	3	4	10	1	0	0	0	0	1	0	0	0	5730	478	17	4	843	4	FAS	10	90774008	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10		90774008	44760739	33	728											
CEND1	51286	ucsc.edu	37	chr11	788570	788570	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggctgacttccctctggActccatggtgggcggggcgt	16	12	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	788570	A	G	788570	3	3	10	1	0	0	0	0	1	0	0	0	3254	275	10	2	446	2	CEND1	11	788570	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10		788570	134217946	34	729											
MUC2	4583	mdanderson.org	37	chr11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtgaccccaaccccaacaCccaccggcacacagacccca	6	22	0	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	1092973	C	T	1092973	3	4	10	1	0	0	0	0	1	0	0	0	10053	507	18	3	4910	3	MUC2	11	1092973	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	304403	1092973	133913543	35	730											
MICALCL	84953	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	12316009	12316009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcctgaccctgccctccGcacccacagtttgcccaatc	5	22	0	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	12316009	G	A	12316009	3	1	10	1	0	0	0	0	1	0	0	0	9649	1087	38	1	1037	1	MICALCL	11	12316009	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	11223036	12316009	122690507	36	731											
SLC1A2	6506	ucsc.edu	37	chr11	35338967	35338967	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agattcttccccagcttgtcAcacaggcgcaggcccaggtg	11	14	2	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	35338967	A	G	35338967	2	3	10	1	0	0	0	0	0	0	0	1	14530	157	6	2		2	SLC1A2	11	35338967	Silent	SNP	A	TCGA-KL-8332-01A-11D-2310-10	23022958	35338967	99667549	37	732											
FOLH1	2346	mdanderson.org	37	chr11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcatcatagtatccaaTtggatgaacaggaatacttg	9	7	1	1	rs199782232		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	49204732	T	C	49204732	3	2	10	1	0	0	0	0	1	0	0	0	6028	1493	52	4	1415	4	FOLH1	11	49204732	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	13865765	49204732	85801784	38	733											
OR5M3	219482	broad.mit.edu	37	chr11	56237919	56237919	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaagagaacttgccattctcGacggctcgttagccccaaaa	9	12	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	56237919	G	A	56237919	4	1	10	1	0	0	0	0	0	1	0	0	11254	1066	37	1	870	1	OR5M3	11	56237919	Nonsense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	7033187	56237919	78768597	39	734											
FAT3	120114	broad.mit.edu	37	chr11	92531376	92531376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggccctggattatgagCgcacatcctcttatcaactc	8	12	2	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		T	92531376	C	T	92531376	3	4	10	1	0	0	0	0	1	0	0	0	5740	768	27	1	5231	1	FAT3	11	92531376	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	36293457	92531376	42475140	40	735											
LPAR5	57121	broad.mit.edu	37	chr12	6729661	6729663	+	In_Frame_Del	DEL	TGT	TGT	-													cccgtagaccgccagcgtgcTgttgtagggcacgaagcaca					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	6729663	TGT	-	6729661	7	5	10	1	0	1	0	1	0	0	0	0	8980	1580	55	0	368	0	LPAR5	12	6729661	In_Frame_Del	DEL	TGT	TCGA-KL-8332-01A-11D-2310-10		6729661	127122234	41	736											
HDAC7	51564	broad.mit.edu;hgsc.bcm.edu	37	chr12	48189416	48189416	+	Frame_Shift_Del	DEL	G	G	-													gaggggtccaggaggagaatGggctgcaggcgagagggcaa					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	48189416	G	-	48189416	7	5	10	1	0	1	0	1	0	0	0	0	7070	1335	47	0	2002	0	HDAC7	12	48189416	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10	41459755	48189416	85662479	42	737	21	2									
HDAC7	51564	bcgsc.ca	37	chr12	48189417	48189417	+	Frame_Shift_Del	DEL	G	G	-													aggggtccaggaggagaatgGgctgcaggcgagagggcaag					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	48189417	G	-	48189417	7	5	10	1	0	1	0	1	0	0	0	0	7070	1232	43	0	2003	0	HDAC7	12	48189417	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10	1	48189417	85662478	43	738	21	2									
TENC1	23371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	53449591	53449591	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagggcaagcttggggtcatCgtttctgcctacatgcacta	11	10	2	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	53449591	C	G	53449591	3	3	10	1	0	0	0	0	1	0	0	0	15862	874	31	5	870	5	TENC1	12	53449591	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	5260174	53449591	80402304	44	739											
TUBA3C	7278	broad.mit.edu	37	chr13	19751676	19751676	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctccatgagcagagatgcGaacccagagccagtgccacc	11	15	0	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	19751676	G	A	19751676	2	1	10	1	0	0	0	0	0	0	0	1	16852	1049	37	1		1	TUBA3C	13	19751676	Silent	SNP	G	TCGA-KL-8332-01A-11D-2310-10		19751676	95418202	45	740											
EBPL	84650	broad.mit.edu	37	chr13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactgaactggtttctttcTgatgcattttcttgagttct	7	8	5	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	50235138	T	G	50235138	3	3	10	1	0	0	0	0	1	0	0	0	4924	1580	55	5	37	5	EBPL	13	50235138	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	30483462	50235138	64934740	46	741											
OR11H12	440153	mdanderson.org	37	chr14	19378135	19378135	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cattgttctcatctctcagaTgcccttctgtggcccaaaca	6	14	4	1	rs71233802		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	19378135	T	A	19378135	3	1	10	1	0	0	0	0	1	0	0	0	11006	1464	51	5	544	5	OR11H12	14	19378135	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10		19378135	87971405	47	742											
DHRS4L2	317749	mdanderson.org	37	chr14	24464310	24464310	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaccctttctttggaagcCtaatggatgtcaccgaggag	10	10	3	0	rs61999853	byfrequency	TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	24464310	C	A	24464310	3	1	10	1	0	0	0	0	1	0	0	0	4531	680	24	5	386	5	DHRS4L2	14	24464310	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	5086175	24464310	82885230	48	743											
DCAF4	26094	ucsc.edu	37	chr14	73425508	73425508	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctttactgttactcctacAgctaattctgcagggcacag	7	12	1	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	73425508	A	G	73425508	3	3	10	1	0	0	0	0	1	0	0	0	4302	188	7	2	1536	2	DCAF4	14	73425508	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	48961198	73425508	33924032	49	744											
RBBP6	5930	broad.mit.edu;hgsc.bcm.edu	37	chr16	24582960	24582960	+	Frame_Shift_Del	DEL	G	G	-													agagagatttgcctaaaaaaGgaacaggagattccaaaaaa					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	24582960	G	-	24582960	7	5	10	1	0	1	0	1	0	0	0	0	13195	1001	35	0	4697	0	RBBP6	16	24582960	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10		24582960	65771793	50	745	22	2									
RBBP6	5930	bcgsc.ca	37	chr16	24582961	24582961	+	Frame_Shift_Del	DEL	G	G	-													gagagatttgcctaaaaaagGaacaggagattccaaaaaaa					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	24582961	G	-	24582961	7	5	10	1	0	1	0	1	0	0	0	0	13195	1174	41	0	4698	0	RBBP6	16	24582961	Frame_Shift_Del	DEL	G	TCGA-KL-8332-01A-11D-2310-10	1	24582961	65771792	51	746	22	2									
ADCY7	113	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	50348998	50348998	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgacatctggggaaacacTgtcaatgtggccagccgaat	11	9	2	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	50348998	T	A	50348998	2	1	10	1	0	0	0	0	0	0	0	1	299	1567	55	5		5	ADCY7	16	50348998	Silent	SNP	T	TCGA-KL-8332-01A-11D-2310-10	25766037	50348998	40005755	52	747											
TSR1	55720	broad.mit.edu	37	chr17	2228035	2228035	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttagtaaaaattttgaaAggatgaccactcagaacaac	6	7	2	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	2228035	A	G	2228035	2	3	10	1	0	0	0	0	0	0	0	1	16769	59	3	2		2	TSR1	17	2228035	Silent	SNP	A	TCGA-KL-8332-01A-11D-2310-10		2228035	78967175	53	748											
FAM20A	54757	ucsc.edu	37	chr17	66538262	66538262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacagacagcatactccgTcttgcacatgtatggacact	8	13	1	1	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	66538262	T	C	66538262	3	2	10	1	0	0	0	0	1	0	0	0	5582	1667	58	2	672	2	FAM20A	17	66538262	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	64310227	66538262	14656948	54	749											
TMEM104	54868	ucsc.edu	37	chr17	72787131	72787131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacccgtttgaaatcacagAccgggtggaaatgggacaaa	11	9	1	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		G	72787131	A	G	72787131	3	3	10	1	0	0	0	0	1	0	0	0	16122	275	10	2	401	2	TMEM104	17	72787131	Missense_Mutation	SNP	A	TCGA-KL-8332-01A-11D-2310-10	6248869	72787131	8408079	55	750											
TCEB3C	162699	bcgsc.ca	37	chr18	44555274	44555274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcttagcgttcactctgcGtccagggaaagcagcttcct	9	13	3	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	44555274	G	A	44555274	3	1	10	1	0	0	0	0	1	0	0	0	15787	1145	40	1	2347	1	TCEB3C	18	44555274	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10		44555274	33521974	56	751											
PLIN4	729359	mdanderson.org	37	chr19	4511494	4511494	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacagtgtccttggtaccGgtcagcacggtcttggccgt	13	12	2	1	rs201001883		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	4511494	G	A	4511494	2	1	10	1	0	0	0	0	0	0	0	1	12172	1103	39	1		1	PLIN4	19	4511494	Silent	SNP	G	TCGA-KL-8332-01A-11D-2310-10		4511494	54617489	57	752											
PLCB1	23236	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	8770880	8770880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaaacacaaggaaatacGtcagcagatcctggatgaaa	10	7	1	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	8770880	G	A	8770880	3	1	10	1	0	0	0	0	1	0	0	0	12107	1145	40	1	3517	1	PLCB1	20	8770880	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10		8770880	54254640	58	753											
COL20A1	57642	ucsc.edu	37	chr20	61950862	61950862	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaagtccctgacctacTtccaccgtgaccccagggct	10	15	0	3	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	61950862	T	C	61950862	3	2	10	1	0	0	0	0	1	0	0	0	3708	1609	56	2	2916	2	COL20A1	20	61950862	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10	53179982	61950862	1074658	59	754											
BRWD1	54014	bcgsc.ca	37	chr21	40649185	40649185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgcttacagtgtggcTttcaagttctgcgatttttt	11	6	2	0	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		C	40649185	T	C	40649185	3	2	10	1	0	0	0	0	1	0	0	0	1533	1609	56	2	6233	2	BRWD1	21	40649185	Missense_Mutation	SNP	T	TCGA-KL-8332-01A-11D-2310-10		40649185	7480710	60	755											
RPGR	6103	broad.mit.edu	37	chrX	38145423	38145423	+	Frame_Shift_Del	DEL	A	A	-													tcttccccctccccttctccAtcctccccttccccttctcc					novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		-	38145423	A	-	38145423	7	5	10	1	0	1	0	1	0	0	0	0	13643	214	8	0	1192	0	RPGR	23	38145423	Frame_Shift_Del	DEL	A	TCGA-KL-8332-01A-11D-2310-10		38145423	117125137	61	756											
MAGEC1	9947	broad.mit.edu	37	chrX	140994357	140994357	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tccactttactgagtcttttCcagagttcccctgagagaac	7	12	1	4	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	140994357	C	A	140994357	3	1	10	1	0	0	0	0	1	0	0	0	9257	854	30	5	1173	5	MAGEC1	23	140994357	Missense_Mutation	SNP	C	TCGA-KL-8332-01A-11D-2310-10	102848934	140994357	14276203	62	757											
PNMA5	114824	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	152159197	152159197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cattaactccagaaaattggGaggacaccctcgctgatcca	8	12	0	2	novel		TCGA-KL-8332-01A-11D-2310-10	TCGA-KL-8332-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6d6f49e-6e95-4e41-8388-71f6fe017d80	1f3af48c-ba6b-4db5-ba11-75b7f50fae1e		A	152159197	G	A	152159197	3	1	10	1	0	0	0	0	1	0	0	0	12236	1174	41	3	404	3	PNMA5	23	152159197	Missense_Mutation	SNP	G	TCGA-KL-8332-01A-11D-2310-10	11164840	152159197	3111363	63	758											
AK2	204	mdanderson.org	37	chr1	33478931	33478931	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtggggtggtttgagtgtGgtaggcttgcaggcggattt	20	3	0	1	rs80324279		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	33478931	G	C	33478931	3	2	11	1	0	0	0	0	1	0	0	0	440	1348	47	5	161	5	AK2	1	33478931	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		33478931	215771690	1	759			1	8		2	2	53	G		9.910112e-05
AK2	204	mdanderson.org	37	chr1	33478983	33478983	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcattatcatctgatcgacgGatcaagggttccccggtgat	10	10	4	2	rs79403800		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	33478983	G	A	33478983	2	1	11	1	0	0	0	0	0	0	0	1	440	1164	41	3		3	AK2	1	33478983	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	52	33478983	215771638	2	760			1	8		2	2	53	G		9.910112e-05
MAP7D1	55700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	36643614	36643614	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgcatcccccaaggggcGggttcggaggaaggaggagg	18	10	0	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	36643614	G	A	36643614	3	1	11	1	0	0	0	0	1	0	0	0	9344	1116	39	1	1554	1	MAP7D1	1	36643614	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	3164631	36643614	212607007	3	761											
MYBPHL	343263	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr1	109840181	109840181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccattccgcacactcacaCgcctggtgtccaaggcacag	8	18	1	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	109840181	C	T	109840181	3	4	11	1	0	0	0	0	1	0	0	0	10093	536	19	1	795	1	MYBPHL	1	109840181	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	73196567	109840181	139410440	4	762											
USP21	27005	broad.mit.edu	37	chr1	161132827	161132827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagttccctctccacccCgccgaggaggggctctgcta	11	17	2	0	rs148729808	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	161132827	C	T	161132827	3	4	11	1	0	0	0	0	1	0	0	0	17159	652	23	1	1030	1	USP21	1	161132827	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	51292646	161132827	88117794	5	763											
OR2M2	391194	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	248343636	248343636	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgttttcttttggctGttatggcttatgaccgctat	9	7	1	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	248343636	G	C	248343636	3	2	11	1	0	0	0	0	1	0	0	0	11089	1377	48	5	351	5	OR2M2	1	248343636	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	87210809	248343636	906985	6	764											
OR2M2	391194	broad.mit.edu;mdanderson.org	37	chr1	248343935	248343935	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgcaatcatcattgcTtcctatgctcgagttattct	6	11	3	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	248343935	T	C	248343935	2	2	11	1	0	0	0	0	0	0	0	1	11089	1596	56	2		2	OR2M2	1	248343935	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	299	248343935	906686	7	765											
TRIM43	129868	mdanderson.org	37	chr2	96260889	96260889	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggaagaacagccttcctctGgagggtaagtatgagaccgt	14	8	1	2	rs199714127		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	96260889	G	T	96260889	3	4	11	1	0	0	0	0	1	0	0	0	16623	1357	47	5	509	5	TRIM43	2	96260889	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		96260889	146938484	8	766											
ABCB11	8647	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr2	169842725	169842725	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagacaccacacgaatccAgtaaagaatcccatcactat	5	12	1	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	169842725	A	C	169842725	2	2	11	1	0	0	0	0	0	0	0	1	42	175	7	5		5	ABCB11	2	169842725	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10	73581836	169842725	73356648	9	767											
PARD3B	117583	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr2	206037069	206037069	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatccgagggatgatccaGttggtgattctgaggaggcc	14	8	1	3	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	206037069	G	A	206037069	2	1	11	1	0	0	0	0	0	0	0	1	11523	1020	36	4		4	PARD3B	2	206037069	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	36194344	206037069	37162304	10	768											
GBX2	2637	broad.mit.edu;bcgsc.ca	37	chr2	237074936	237074936	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccagcgcgtggcccgggTcttcctccttgtgagctgcc	12	17	1	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	237074936	T	C	237074936	3	2	11	1	0	0	0	0	1	0	0	0	6335	1667	58	2	382	2	GBX2	2	237074936	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	31037867	237074936	6124437	11	769											
RBM15B	29890	ucsc.edu;bcgsc.ca	37	chr3	51429336	51429336	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcaagcgcttcggcgagaTcagcctccgcctgtcgcaca	11	15	2	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	51429336	T	C	51429336	3	2	11	1	0	0	0	0	1	0	0	0	13209	1435	50	4	508	4	RBM15B	3	51429336	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		51429336	146593094	12	770											
MCF2L2	23101	hgsc.bcm.edu	37	chr3	183145747	183145747	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctggggaggcatctcttCttttaagcaagacagcattt	9	10	2	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	183145747	C	T	183145747	3	4	11	1	0	0	0	0	1	0	0	0	9457	922	32	4	3445	4	MCF2L2	3	183145747	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	131716411	183145747	14876683	13	771											
MUC4	4585	mdanderson.org	37	chr3	195507529	195507529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggtgtcacctgtggatActgaggaaaggctggtgaca	17	6	1	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	195507529	A	G	195507529	3	3	11	1	0	0	0	0	1	0	0	0	10056	391	14	2		2	MUC4	3	195507529	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10	12361782	195507529	2514901	14	772											
MUC4	4585	mdanderson.org	37	chr3	195510910	195510910	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgagggagtgtcggtgacaGgtagaggggtggtgtgacct	20	5	0	4	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	195510910	G	T	195510910	3	4	11	1	0	0	0	0	1	0	0	0	10056	1000	35	5		5	MUC4	3	195510910	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	3381	195510910	2511520	15	773											
LETM1	3954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	1821161	1821162	+	Missense_Mutation	DNP	GC	GC	AG													tgcagcttagagcaggcatcGctgaggatgtcgatttcctc					novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		AG	1821162	GC	AG	1821161	3	1	11	1	0	0	0	0	1	0	0	0	8796	1078	38	1	588	1	LETM1	4	1821161	Missense_Mutation	DNP	GC	TCGA-KL-8333-01A-11D-2310-10		1821161	189333115	16	774	23	2									
LETM1	3954	bcgsc.ca	37	chr4	1821162	1821162	+	Missense_Mutation	SNP	C	C	G													gcagcttagagcaggcatcgCtgaggatgtcgatttcctcc					novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	1821162	C	G	1821162	3	3	11	1	0	0	0	0	1	0	0	0	8796	797	28	5	589	5	LETM1	4	1821162	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	1	1821162	189333114	17	775	23	2									
OTOP1	133060	broad.mit.edu	37	chr4	4228459	4228459	+	Frame_Shift_Del	DEL	G	G	-													ggcgcgcacaccgccccgccGgggggccggggattccgggg					novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		-	4228459	G	-	4228459	7	5	11	1	0	1	0	1	0	0	0	0	11384	1115	39	0	1729	0	OTOP1	4	4228459	Frame_Shift_Del	DEL	G	TCGA-KL-8333-01A-11D-2310-10	2407297	4228459	186925817	18	776											
PDE8B	8622	broad.mit.edu	37	chr5	76714238	76714238	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccagctcacggtcaaggAcaccaaatgcaacattttca	6	13	3	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	76714238	A	G	76714238	3	3	11	1	0	0	0	0	1	0	0	0	11733	275	10	2	2166	2	PDE8B	5	76714238	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10		76714238	104201022	19	777											
NHP2	55651	broad.mit.edu	37	chr5	177580963	177580963	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctccgactcagcccaatcGttgacgcccagcttcgtaac	8	16	2	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	177580963	G	A	177580963	5	1	11	1	0	0	0	0	0	0	1	0	10488	1160	40	1		1	NHP2	5	177580963	Splice_Site	SNP	G	TCGA-KL-8333-01A-11D-2310-10	100866725	177580963	3334297	20	778											
TFAP2A	7020	ucsc.edu	37	chr6	10410153	10410153	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggacctcctcgatggcgTgaggtaaggagtggatcgag	17	9	0	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	10410153	T	C	10410153	3	2	11	1	0	0	0	0	1	0	0	0	15891	1696	59	2	876	2	TFAP2A	6	10410153	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		10410153	160704914	21	779											
GMPR	2766	ucsc.edu	37	chr6	16247121	16247121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaattcaaagcagacctacTcagggattcccatcatcgtg	8	11	3	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	16247121	T	C	16247121	3	2	11	1	0	0	0	0	1	0	0	0	6552	1551	54	2	142	2	GMPR	6	16247121	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	5836968	16247121	154867946	22	780											
LRRC1	55227	ucsc.edu	37	chr6	53660086	53660086	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catccccctgtggcggtgcaAccgtcatgtggagagcatcg	13	13	1	1	rs201594887		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	53660086	A	G	53660086	3	3	11	1	0	0	0	0	1	0	0	0	9038	43	2	2	34	2	LRRC1	6	53660086	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10	37412965	53660086	117454981	23	781											
KIAA1009	22832	broad.mit.edu	37	chr6	84884491	84884491	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattcaatttgaagagttcTttttcctgttgtttctttag	7	5	3	3	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	84884491	T	C	84884491	2	2	11	1	0	0	0	0	0	0	0	1	8264	1606	56	2		2	KIAA1009	6	84884491	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	31224405	84884491	86230576	24	782											
TAGAP	117289	ucsc.edu	37	chr6	159456931	159456931	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctacatcgtcgcacgagAcagtcccgcttattcctctg	9	14	1	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	159456931	A	G	159456931	2	3	11	1	0	0	0	0	0	0	0	1	15638	273	10	2		2	TAGAP	6	159456931	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10	74572440	159456931	11658136	25	783											
STK31	56164	broad.mit.edu	37	chr7	23825129	23825129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccttacaatgagcttggaAcgagatcttcttgatgctga	9	9	2	4	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	23825129	A	G	23825129	2	3	11	1	0	0	0	0	0	0	0	1	15396	40	2	2		2	STK31	7	23825129	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10		23825129	135313534	26	784											
LIMK1	3984	broad.mit.edu	37	chr7	73535525	73535526	+	Frame_Shift_Ins	INS	-	-	C													ctccgcatgcacctggccggINSccacctgccactgggcccac					novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	73535526	-	C	73535525	7	5	11	1	0	1	1	0	0	0	0	0	8864	1203	42	0	1900	0	LIMK1	7	73535525	Frame_Shift_Ins	INS	-	TCGA-KL-8333-01A-11D-2310-10	49710396	73535525	85603138	27	785											
MLL3	58508	bcgsc.ca	37	chr7	151962265	151962265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taagaggtctcccgggctgtCgcacactgcacagtttgcat	11	12	1	1	rs201834857		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	151962265	C	T	151962265	3	4	11	1	0	0	0	0	1	0	0	0	9699	884	31	1	13901	1	MLL3	7	151962265	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	78426740	151962265	7176398	28	786											
PHYHIP	9796	broad.mit.edu	37	chr8	22079280	22079280	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggagtcctgcgggggctgGcccgtgttgaactccgtgtt	18	10	0	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	22079280	G	T	22079280	2	4	11	1	0	0	0	0	0	0	0	1	11946	1190	42	5		5	PHYHIP	8	22079280	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10		22079280	124284742	29	787											
ABRA	137735	broad.mit.edu	37	chr8	107773293	107773293	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagcgtaatcacaacatggTcatctcggccttgccatagc	9	12	3	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	107773293	T	C	107773293	3	2	11	1	0	0	0	0	1	0	0	0	100	1667	58	2	31	2	ABRA	8	107773293	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	85694013	107773293	38590729	30	788											
FER1L6	654463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	125074107	125074107	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggaactgcctgagaaCgagcttctgcacccgccact	10	15	1	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	125074107	C	T	125074107	2	4	11	1	0	0	0	0	0	0	0	1	5864	535	19	1		1	FER1L6	8	125074107	Silent	SNP	C	TCGA-KL-8333-01A-11D-2310-10	17300814	125074107	21289915	31	789											
NUP214	8021	bcgsc.ca	37	chr9	134074387	134074387	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaacctctgggttcagcTtttgccaagcttcaggtaag	10	11	3	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	134074387	T	C	134074387	3	2	11	1	0	0	0	0	1	0	0	0	10841	1609	56	2	5620	2	NUP214	9	134074387	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		134074387	7139044	32	790											
SH3PXD2A	9644	mdanderson.org;bcgsc.ca	37	chr10	105362429	105362429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggaccttctggtaggcgCtgcatgtcatgtacgaggtg	14	10	2	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	105362429	C	T	105362429	3	4	11	1	0	0	0	0	1	0	0	0	14354	797	28	4	859	4	SH3PXD2A	10	105362429	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		105362429	30172318	33	791											
PRKCDBP	112464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	6341681	6341681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcgcctcgggcacaggcCcccgctccaacgcactctcc	10	22	1	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	6341681	C	T	6341681	3	4	11	1	0	0	0	0	1	0	0	0	12599	623	22	3	767	3	PRKCDBP	11	6341681	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		6341681	128664835	34	792											
CAPN5	726	broad.mit.edu	37	chr11	76804733	76804733	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcgccttctccgcagggcatCtgcgaggacccccgcctctt	10	18	3	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	76804733	C	T	76804733	2	4	11	1	0	0	0	0	0	0	0	1	2654	903	32	4		4	CAPN5	11	76804733	Silent	SNP	C	TCGA-KL-8333-01A-11D-2310-10	70463052	76804733	58201783	35	793											
MRE11A	4361	bcgsc.ca	37	chr11	94211961	94211961	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaccggactaatgtctaTcttctccacagacattgaac	5	12	3	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	94211961	T	C	94211961	3	2	11	1	0	0	0	0	1	0	0	0	9837	1435	50	4	1702	4	MRE11A	11	94211961	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	17407228	94211961	40794555	36	794											
ADAMTS15	170689	bcgsc.ca	37	chr11	130332482	130332501	+	Frame_Shift_Del	DEL	CTGGCTTTTGGCGTGGGCTC	CTGGCTTTTGGCGTGGGCTC	-													cctgagccagcagtgcgagcTggcttttggcgtgggctcca					novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	CTGGCTTTTGGCGTGGGCTC	CTGGCTTTTGGCGTGGGCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		-	130332501	CTGGCTTTTGGCGTGGGCTC	-	130332482	7	5	11	1	0	1	0	1	0	0	0	0	260	1580	55	0	1363	0	ADAMTS15	11	130332482	Frame_Shift_Del	DEL	CTGGCTTTTGGCGTGGGCTC	TCGA-KL-8333-01A-11D-2310-10	36120521	130332482	4674034	37	795											
PRB2	653247	mdanderson.org	37	chr12	11546616	11546616	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctttcctggaggaggtggAggaccttgaggctggttgcc	18	8	0	1	rs199923047		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	11546616	A	G	11546616	2	3	11	1	0	0	0	0	0	0	0	1	12532	291	11	2		2	PRB2	12	11546616	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10		11546616	122305279	38	796											
PPFIA2	8499	ucsc.edu	37	chr12	81719630	81719630	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggactcctgagctgcagcTtcagtctccataaagcctcc	9	14	2	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	81719630	T	C	81719630	2	2	11	1	0	0	0	0	0	0	0	1	12390	1606	56	2		2	PPFIA2	12	81719630	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	70173014	81719630	52132265	39	797											
RILPL1	353116	broad.mit.edu	37	chr12	123957223	123957223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttatctcgggagaagaaGctaaacctttggaagggaaa	11	6	2	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	123957223	G	T	123957223	3	4	11	1	0	0	0	0	1	0	0	0	13454	962	34	5	141	5	RILPL1	12	123957223	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10	42237593	123957223	9894672	40	798											
TPTE2	93492	mdanderson.org	37	chr13	20000609	20000609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatcatacagaggtggacCgtcatatacattaattaata	6	7	3	1	rs141691551		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	20000609	C	T	20000609	3	4	11	1	0	0	0	0	1	0	0	0	16536	652	23	1	229	1	TPTE2	13	20000609	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		20000609	95169269	41	799											
ZMYM5	9205	broad.mit.edu	37	chr13	20426257	20426257	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagactagttgccatggccaTattccctaataaagcaggag	10	9	0	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	20426257	T	C	20426257	3	2	11	1	0	0	0	0	1	0	0	0	17808	1406	49	4	2080	4	ZMYM5	13	20426257	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	425648	20426257	94743621	42	800											
KCNK10	54207	broad.mit.edu	37	chr14	88652217	88652217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgttcagctgctccggccCcttcaggcgcaggttgttgg	13	13	2	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	88652217	C	T	88652217	3	4	11	1	0	0	0	0	1	0	0	0	8120	623	22	3	341	3	KCNK10	14	88652217	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		88652217	18697323	43	801											
DYX1C1	161582	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	55731737	55731737	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgcaaagttcagctatgtCagtattcattgctcttcgtg	8	9	4	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	55731737	C	A	55731737	3	1	11	1	0	0	0	0	1	0	0	0	4899	826	29	5	555	5	DYX1C1	15	55731737	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10		55731737	46799655	44	802											
ACSM5	54988	bcgsc.ca	37	chr16	20430733	20430733	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacagcagtcggccaggctGgttgaacttcagggaactcc	13	11	1	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	20430733	G	A	20430733	4	1	11	1	0	0	0	0	0	1	0	0	187	1357	47	4	609	4	ACSM5	16	20430733	Nonsense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		20430733	69924020	45	803											
RRAD	6236	ucsc.edu	37	chr16	66958810	66958810	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagcagcagcaccttgtaAacgctctcgtctgagtcgct	9	15	2	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	66958810	A	G	66958810	2	3	11	1	0	0	0	0	0	0	0	1	13766	1	1	4		4	RRAD	16	66958810	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10	46528077	66958810	23395943	46	804											
CPNE7	27132	broad.mit.edu;bcgsc.ca	37	chr16	89649860	89649860	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggtaaataggtatgatgAcctctgcctcccctgggcga	11	12	1	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	89649860	A	G	89649860	3	3	11	1	0	0	0	0	1	0	0	0	3846	275	10	2	520	2	CPNE7	16	89649860	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10	22691050	89649860	704893	47	805											
FBXW10	10517	mdanderson.org	37	chr17	18682163	18682163	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgcacagtcctagagTccagtccaccataccccagc	6	17	1	1	rs199779085	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	18682163	T	C	18682163	3	2	11	1	0	0	0	0	1	0	0	0	5812	1667	58	2	2762	2	FBXW10	17	18682163	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		18682163	62513047	48	806											
RNF43	54894	hgsc.bcm.edu;ucsc.edu	37	chr17	56448329	56448329	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgaggactctccagcttgacGatgctgatgaatccaggctc	11	12	1	3	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	56448329	G	T	56448329	2	4	11	1	0	0	0	0	0	0	0	1	13590	1048	37	5		5	RNF43	17	56448329	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	37766166	56448329	24746881	49	807											
FASN	2194	ucsc.edu	37	chr17	80049269	80049269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggctgtgccggaggcCctgctccagcagcttctgca	13	15	1	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	80049269	C	T	80049269	3	4	11	1	0	0	0	0	1	0	0	0	5732	623	22	3	6354	3	FASN	17	80049269	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	23600940	80049269	1145941	50	808											
EPS15L1	58513	bcgsc.ca	37	chr19	16513266	16513266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgggcctcctggcggcTttcatgcagctgggaaagtt	14	11	1	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	16513266	T	C	16513266	3	2	11	1	0	0	0	0	1	0	0	0	5232	1609	56	2	969	2	EPS15L1	19	16513266	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10		16513266	42615717	51	809											
ZNF98	148198	mdanderson.org	37	chr19	22574547	22574547	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggactggttaaaagctTtgccacattcttcacatttg	9	8	2	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	22574547	T	A	22574547	3	1	11	1	0	0	0	0	1	0	0	0	18306	1841	64	5	232	5	ZNF98	19	22574547	Missense_Mutation	SNP	T	TCGA-KL-8333-01A-11D-2310-10	6061281	22574547	36554436	52	810											
ZNF416	55659	mdanderson.org	37	chr19	58084930	58084930	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtcaggtgcaaaatgtcGgtcaggaatgggacacacat	13	8	2	0	rs3746222	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	58084930	G	A	58084930	2	1	11	1	0	0	0	0	0	0	0	1	17998	1103	39	1		1	ZNF416	19	58084930	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	35510383	58084930	1044053	53	811											
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	attctccacattcataaggtCttttcccagtgtgaactctc	5	12	4	1	rs113623532		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		T	58385793	C	T	58385793	3	4	11	1	0	0	0	0	1	0	0	0	18279	913	32	4	1606	4	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-KL-8333-01A-11D-2310-10	300863	58385793	743190	54	812											
SIRPG	55423	mdanderson.org	37	chr20	1617069	1617069	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtctctgggagagaagccAtgggactcacaggtgaaact	13	8	2	2	rs2277761	byfrequency	TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	1617069	A	G	1617069	2	3	11	1	0	0	0	0	0	0	0	1	14434	214	8	4		4	SIRPG	20	1617069	Silent	SNP	A	TCGA-KL-8333-01A-11D-2310-10		1617069	61408451	55	813											
CCDC157	550631	broad.mit.edu	37	chr22	30766573	30766573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgacgcatgcgccagcGtccagggaagcctgcagaag	14	13	0	2	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	30766573	G	A	30766573	3	1	11	1	0	0	0	0	1	0	0	0	2815	1145	40	1	689	1	CCDC157	22	30766573	Missense_Mutation	SNP	G	TCGA-KL-8333-01A-11D-2310-10		30766573	20537993	56	814											
UBA1	7317	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	47062169	47062169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggggatctggcacccAtaaacgccttcattgggggc	13	12	2	0	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		G	47062169	A	G	47062169	3	3	11	1	0	0	0	0	1	0	0	0	16933	217	8	4	1227	4	UBA1	23	47062169	Missense_Mutation	SNP	A	TCGA-KL-8333-01A-11D-2310-10		47062169	108208391	57	815											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	51076024	G	A	51076024	2	1	11	1	0	0	0	0	0	0	0	1	10805	991	35	4		4	NUDT10	23	51076024	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	4013855	51076024	104194536	58	816											
GPR112	139378	broad.mit.edu	37	chrX	135429078	135429078	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacctttggatcagactgcTtccacaaccattgttattgt	6	12	1	1	novel		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		C	135429078	T	C	135429078	2	2	11	1	0	0	0	0	0	0	0	1	6686	1596	56	2		2	GPR112	23	135429078	Silent	SNP	T	TCGA-KL-8333-01A-11D-2310-10	84353054	135429078	19841482	59	817											
ABCD1	215	mdanderson.org	37	chrX	153008675	153008675	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcggcccggacccccagGcccaagtacgccctcctgga	10	20	1	0	rs201197921		TCGA-KL-8333-01A-11D-2310-10	TCGA-KL-8333-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56505cb-e150-408d-9df6-3af4e608c376	422375ba-7c98-42a5-b8cc-f88084a938f6		A	153008675	G	A	153008675	2	1	11	1	0	0	0	0	0	0	0	1	60	1217	42	3		3	ABCD1	23	153008675	Silent	SNP	G	TCGA-KL-8333-01A-11D-2310-10	17579597	153008675	2261885	60	818											
PDZK1IP1	10158	broad.mit.edu	37	chr1	47653017	47653017	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcctggcaccagaagtggttGactgcaaaggcgattgcaac	12	10	0	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	47653017	G	A	47653017	2	1	12	1	0	0	0	0	0	0	0	1	11787	1277	45	4		4	PDZK1IP1	1	47653017	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10		47653017	201597604	1	819											
USH2A	7399	broad.mit.edu	37	chr1	216219788	216219788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttacctgtgactatgtagtTctcctcactgcctgaataga	7	11	2	3	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	216219788	T	C	216219788	3	2	12	1	0	0	0	0	1	0	0	0	17142	1783	62	4	9462	4	USH2A	1	216219788	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	168566771	216219788	33030833	2	820											
ENAH	55740	broad.mit.edu	37	chr1	225702514	225702515	+	Frame_Shift_Ins	INS	-	-	G													gaggaggtggagggggccctINSgggggaggagggagggctac					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	225702515	-	G	225702514	7	5	12	1	0	1	1	0	0	0	0	0	5150	1567	55	0	809	0	ENAH	1	225702514	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10	9482726	225702514	23548107	3	821											
TRIM11	81559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	228582602	228582602	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtagtccagaaagatccccAcgcgcctgggtgggtcccgg	14	14	0	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	228582602	A	G	228582602	3	3	12	1	0	0	0	0	1	0	0	0	16592	159	6	2	199	2	TRIM11	1	228582602	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	2880088	228582602	20668019	4	822											
SLC1A4	6509	ucsc.edu	37	chr2	65217143	65217143	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgctgtcgcctactttggCctcaccacactgagtgcctc	8	16	1	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	65217143	C	A	65217143	2	1	12	1	0	0	0	0	0	0	0	1	14532	726	26	5		5	SLC1A4	2	65217143	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		65217143	177982230	5	823											
MPHOSPH10	10199	bcgsc.ca	37	chr2	71357850	71357850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcggtgtctgacggaagtcGgcaaagccacgggtcggccc	16	12	1	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	71357850	G	A	71357850	3	1	12	1	0	0	0	0	1	0	0	0	9803	1116	39	1	57	1	MPHOSPH10	2	71357850	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	6140707	71357850	171841523	6	824											
PRKRA	8575	mdanderson.org	37	chr2	179315757	179315757	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggtgcctgctctgggacaTggcgagaagggacggctcag	18	10	2	1	rs9406386	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	179315757	T	G	179315757	3	3	12	1	0	0	0	0	1	0	0	0	12613	1464	51	5	1004	5	PRKRA	2	179315757	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	107957907	179315757	63883616	7	825											
NBEAL1	65065	broad.mit.edu	37	chr2	204055051	204055051	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccttaacagatgagaaagAaagaaaagccttagaaggga	11	5	0	5	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	204055051	A	G	204055051	3	3	12	1	0	0	0	0	1	0	0	0	10266	246	9	4	6947	4	NBEAL1	2	204055051	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	24739294	204055051	39144322	8	826											
EEF1B2	1933	hgsc.bcm.edu	37	chr2	207027464	207027464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctttttagctaaactagttCcagtgggatacggaattaag	9	6	1	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	207027464	C	T	207027464	3	4	12	1	0	0	0	0	1	0	0	0	4962	855	30	3	557	3	EEF1B2	2	207027464	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	2972413	207027464	36171909	9	827											
SLC23A3	151295	ucsc.edu	37	chr2	220030023	220030023	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggcatgtggaggtgggggAggcaaatgcagcagccggcc	19	9	0	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	220030023	A	G	220030023	2	3	12	1	0	0	0	0	0	0	0	1	14562	291	11	2		2	SLC23A3	2	220030023	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	13002559	220030023	23169350	10	828											
COL4A3	1285	broad.mit.edu	37	chr2	228112294	228112294	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctggtttgaaaggAcaaaaggtaagtcattggtg	15	4	1	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	228112294	A	G	228112294	2	3	12	1	0	0	0	0	0	0	0	1	3720	262	10	2		2	COL4A3	2	228112294	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	8082271	228112294	15087079	11	829											
COPS8	10920	broad.mit.edu	37	chr2	238004481	238004481	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaggcatattagaacaaggAtggcaagctgattccaccac	9	9	0	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	238004481	A	G	238004481	2	3	12	1	0	0	0	0	0	0	0	1	3769	320	12	4		4	COPS8	2	238004481	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	9892187	238004481	5194892	12	830											
AZI2	64343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	28365568	28365568	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagttctgattatgttgatCcaagtaatgcagtggtggaa	12	5	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	28365568	C	T	28365568	3	4	12	1	0	0	0	0	1	0	0	0	1245	855	30	3	38	3	AZI2	3	28365568	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10		28365568	169656862	13	831											
OR5H1	26341	mdanderson.org	37	chr3	97851892	97851892	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatgttttctcttggcaacGatggcatatgatcgctatgt	10	7	1	1	rs5009897		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	97851892	G	A	97851892	2	1	12	1	0	0	0	0	0	0	0	1	11238	1045	37	1		1	OR5H1	3	97851892	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	69486324	97851892	100170538	14	832											
KALRN	8997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	124201729	124201729	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtccaaaggatcaccaaAtatcaactgctcctgaaggt	7	12	2	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	124201729	A	T	124201729	3	4	12	1	0	0	0	0	1	0	0	0	8036	98	4	5	4370	5	KALRN	3	124201729	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	26349837	124201729	73820701	15	833											
EPHB1	2047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	134873005	134873005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccacagccccctccaccGttcccatcatgcaccaagtc	4	21	2	0	rs183234182	by1000genomes	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	134873005	G	A	134873005	3	1	12	1	0	0	0	0	1	0	0	0	5213	1145	40	1	1331	1	EPHB1	3	134873005	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	10671276	134873005	63149425	16	834											
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1389130	1389130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcacgtgccgatgtggGgtgcccgcctgctcacatgt	13	14	2	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	1389130	G	A	1389130	2	1	12	1	0	0	0	0	0	0	0	1	3906	1219	43	3		3	CRIPAK	4	1389130	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10		1389130	189765146	17	835											
UCHL1	7345	mdanderson.org	37	chr4	41259633	41259633	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcctctccgcaggtgctgtCccggctgggggtcgccggcc	15	17	1	0	rs5030732		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	41259633	C	A	41259633	3	1	12	1	0	0	0	0	1	0	0	0	17026	855	30	5	63	5	UCHL1	4	41259633	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	39870503	41259633	149894643	18	836											
DOCK2	1794	ucsc.edu	37	chr5	169504838	169504838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagcaagcctacctcagAgaggtcagtccctgcacccc	8	19	2	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	169504838	A	G	169504838	3	3	12	1	0	0	0	0	1	0	0	0	4724	304	11	2	5181	2	DOCK2	5	169504838	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10		169504838	11410422	19	837											
HLA-C	3107	mdanderson.org	37	chr6	31238009	31238009	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctcagggtgaggggctcTtgcagcccctcgtgctgcat	14	13	2	1	rs1131014	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	31238009	T	C	31238009	2	2	12	1	0	0	0	0	0	0	0	1	7255	1606	56	2		2	HLA-C	6	31238009	Silent	SNP	T	TCGA-KL-8334-01A-11D-2310-10		31238009	139877058	20	838											
EHMT2	10919	broad.mit.edu;bcgsc.ca	37	chr6	31848574	31848574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcacacaggtggttgatgaAgcggctgatgttgccatagt	14	7	1	3	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	31848574	A	G	31848574	3	3	12	1	0	0	0	0	1	0	0	0	5021	72	3	2	312	2	EHMT2	6	31848574	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	610565	31848574	139266493	21	839											
HLA-DQA1	3117	bcgsc.ca	37	chr6	32609173	32609173	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgaatttgatggagatgagCagttctacgtggacctggag	14	5	1	4	rs10093	bycluster;byfrequency;by1000genomes	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	32609173	C	G	32609173	3	3	12	1	0	0	0	0	1	0	0	0	7262	711	25	5	175	5	HLA-DQA1	6	32609173	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	760599	32609173	138505894	22	840											
CPNE5	57699	broad.mit.edu;ucsc.edu	37	chr6	36759870	36759870	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacatttctttcctgggacAccactgggagaggagaagat	11	10	1	3	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	36759870	A	G	36759870	2	3	12	1	0	0	0	0	0	0	0	1	3844	146	6	2		2	CPNE5	6	36759870	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	4150697	36759870	134355197	23	841											
CNR1	1268	hgsc.bcm.edu	37	chr6	88853866	88853866	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcagaatgcaaacaccgtCttaatgagcttgttcatctt	7	10	3	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	88853866	C	T	88853866	2	4	12	1	0	0	0	0	0	0	0	1	3660	912	32	4		4	CNR1	6	88853866	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	52093996	88853866	82261201	24	842											
URGCP	55665	broad.mit.edu	37	chr7	43917145	43917146	+	Frame_Shift_Ins	INS	-	-	C													agtgggcaaaacgcctctggINScctgccggcagcctccctgc					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	43917146	-	C	43917145	7	5	12	1	0	1	1	0	0	0	0	0	17132	1190	42	0	882	0	URGCP	7	43917145	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10		43917145	115221518	25	843											
KIAA1324L	222223	broad.mit.edu	37	chr7	86542297	86542297	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccgcatggaatacaagccTctttgccatagacctgatgt	9	12	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	86542297	T	C	86542297	3	2	12	1	0	0	0	0	1	0	0	0	8285	1551	54	2	1170	2	KIAA1324L	7	86542297	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	42625152	86542297	72596366	26	844											
ZC3HAV1	56829	ucsc.edu	37	chr7	138794049	138794049	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcgcacaggattttggtgAtgaagcagcacacctccggg	15	10	0	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	138794049	A	G	138794049	3	3	12	1	0	0	0	0	1	0	0	0	17680	333	12	4	2735	4	ZC3HAV1	7	138794049	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	52251752	138794049	20344614	27	845											
ASPN	54829	hgsc.bcm.edu	37	chr9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagagagttgtcctcatcAtcatcatcatcatcatcatc	4	11	8	1	rs143279922		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	95237030	A	C	95237030	3	2	12	1	0	0	0	0	1	0	0	0	1061	214	8	5	1020	5	ASPN	9	95237030	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10		95237030	45976401	28	846											
KIAA1462	57608	ucsc.edu	37	chr10	30317404	30317404	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtttggaactttttgAgcttggtttgagtttcgcag	11	7	0	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	30317404	A	G	30317404	3	3	12	1	0	0	0	0	1	0	0	0	8295	304	11	2	2414	2	KIAA1462	10	30317404	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10		30317404	105217343	29	847											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	43659419	G	T	43659419	3	4	12	1	0	0	0	0	1	0	0	0	3970	1281	45	5	1100	5	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	13342015	43659419	91875328	30	848											
UNC5B	219699	ucsc.edu	37	chr10	73044593	73044593	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccgcgggcaccaccaagAgtcgccgagcctacgtccgc	12	18	0	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	73044593	A	G	73044593	3	3	12	1	0	0	0	0	1	0	0	0	17098	304	11	2	431	2	UNC5B	10	73044593	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	29385174	73044593	62490154	31	849											
GPAM	57678	broad.mit.edu	37	chr10	113933564	113933564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggcagaaccatcaggGtttaattcagcagccacttc	10	11	2	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	113933564	G	T	113933564	3	4	12	1	0	0	0	0	1	0	0	0	6645	1252	44	5	2097	5	GPAM	10	113933564	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	40888971	113933564	21601183	32	850											
ATE1	11101	broad.mit.edu;bcgsc.ca	37	chr10	123596309	123596309	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgagaagttttctcatgaAgctgcctagtaaaagcaatt	9	6	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	123596309	A	G	123596309	3	3	12	1	0	0	0	0	1	0	0	0	1082	72	3	2	387	2	ATE1	10	123596309	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	9662745	123596309	11938438	33	851											
MUC6	4588	bcgsc.ca	37	chr11	1016628	1016628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattggtggggctgtgtggGtggaccctgtggccttgagc	18	8	1	1	rs202039948		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	1016628	G	A	1016628	3	1	12	1	0	0	0	0	1	0	0	0	10058	1261	44	3	1158	3	MUC6	11	1016628	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10		1016628	133989888	34	852			1	9		5	5	1352	G		3.814319e-12
MUC6	4588	bcgsc.ca	37	chr11	1016662	1016662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgagcgttgttggtggagGaacggtgcctgttggcgttg	18	6	0	1	rs201489806		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	1016662	G	A	1016662	3	1	12	1	0	0	0	0	1	0	0	0	10058	1174	41	3	1192	3	MUC6	11	1016662	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	34	1016662	133989854	35	853			1	9		5	5	1352	G		3.814319e-12
MUC6	4588	mdanderson.org	37	chr11	1017022	1017022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttggggtgacttcaggatGgtgtgttgaggaagtgtggt	19	2	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	1017022	G	A	1017022	3	1	12	1	0	0	0	0	1	0	0	0	10058	1348	47	4	1552	4	MUC6	11	1017022	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	360	1017022	133989494	36	854			1	9		5	5	1352	G		3.814319e-12
MUC6	4588	mdanderson.org	37	chr11	1017543	1017543	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatggtgtgtggaggaaGtgtgtgaatgtagggatgta	19	1	0	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	1017543	G	A	1017543	3	1	12	1	0	0	0	0	1	0	0	0	10058	1029	36	4	2073	4	MUC6	11	1017543	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	521	1017543	133988973	37	855			1	9		5	5	1352	G		3.814319e-12
MUC6	4588	mdanderson.org	37	chr11	1017979	1017979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggaagtgtggtctgagGgtgtgatggggttggatagg	22	1	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	1017979	G	A	1017979	3	1	12	1	0	0	0	0	1	0	0	0	10058	1232	43	3	2509	3	MUC6	11	1017979	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	436	1017979	133988537	38	856			1	9		5	5	1352	G		3.814319e-12
TH	7054	broad.mit.edu	37	chr11	2186902	2186902	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagagactctcaccaggAgctccccgtaggaggacagc	13	12	1	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	2186902	A	G	2186902	3	3	12	1	0	0	0	0	1	0	0	0	15942	304	11	2	309	2	TH	11	2186902	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	1168923	2186902	132819614	39	857											
TMEM132A	54972	ucsc.edu	37	chr11	60701218	60701218	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctggccctgctgaagggTgagtggaggcctgaggaagc	17	9	0	3	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	60701218	T	C	60701218	5	2	12	1	0	0	0	0	0	0	1	0	16149	1710	59	2	1594	2	TMEM132A	11	60701218	Splice_Site	SNP	T	TCGA-KL-8334-01A-11D-2310-10	58514316	60701218	74305298	40	858											
RSF1	51773	broad.mit.edu	37	chr11	77409663	77409663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcactgccagacccttcacTttcatcattgctggaatatt	5	12	4	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	77409663	T	C	77409663	3	2	12	1	0	0	0	0	1	0	0	0	13794	1609	56	2	1781	2	RSF1	11	77409663	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	16708445	77409663	57596853	41	859											
PPP2R1B	5519	broad.mit.edu	37	chr11	111637006	111637007	+	Frame_Shift_Ins	INS	-	-	C													gcggagctcgtcgattaaaaINSccgcgatcgggtatagcgaa					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	111637007	-	C	111637006	7	5	12	1	0	1	1	0	0	0	0	0	12468	43	2	0	2008	0	PPP2R1B	11	111637006	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10	34227343	111637006	23369510	42	860											
A2M	2	broad.mit.edu	37	chr12	9242558	9242558	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcaggaactgaaggcacCtcagtcccacacagctcttg	9	13	3	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	9242558	C	T	9242558	2	4	12	1	0	0	0	0	0	0	0	1	4	680	24	4		4	A2M	12	9242558	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		9242558	124609337	43	861											
TAS2R30	259293	mdanderson.org	37	chr12	11286276	11286276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaaaagatatcagggtcaGagtgaggggtacaaagtttg	14	4	2	4	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	11286276	G	C	11286276	3	2	12	1	0	0	0	0	1	0	0	0	15674	933	33	5	395	5	TAS2R30	12	11286276	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	2043718	11286276	122565619	44	862											
SLCO1C1	53919	mdanderson.org	37	chr12	20905250	20905250	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcttctagacatatatatCtgggactaactgtgatactg	7	8	3	2	rs6487138	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	20905250	C	T	20905250	3	4	12	1	0	0	0	0	1	0	0	0	14823	913	32	4	2084	4	SLCO1C1	12	20905250	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	9618974	20905250	112946645	45	863											
ANKS1B	56899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	100377920	100377920	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaggggtccggatccaccGcccaggatccctcctttcct	11	17	0	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	100377920	G	A	100377920	2	1	12	1	0	0	0	0	0	0	0	1	689	1074	38	1		1	ANKS1B	12	100377920	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	79472670	100377920	33473975	46	864											
FNDC3A	22862	broad.mit.edu	37	chr13	49719943	49719943	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atccaggcaaggacagtagtActtacctggtcaccaccttc	8	13	1	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	49719943	A	G	49719943	2	3	12	1	0	0	0	0	0	0	0	1	6018	378	14	2		2	FNDC3A	13	49719943	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10		49719943	65449935	47	865											
MYH6	4624	broad.mit.edu	37	chr14	23871766	23871766	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccgtcagcttgtagaCgccagctttctcctctgaag	10	14	3	2	rs200260629	alternate_allele	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	23871766	C	A	23871766	3	1	12	1	0	0	0	0	1	0	0	0	10116	536	19	5	4883	5	MYH6	14	23871766	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10		23871766	83477774	48	866											
C14orf1	11161	broad.mit.edu	37	chr14	76118234	76118234	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtgtgatgtgatagagccTataaggaagcagacagaaat	13	4	0	5	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	76118234	T	C	76118234	5	2	12	1	0	0	0	0	0	0	1	0	1745	1536	53	2	207	2	C14orf1	14	76118234	Splice_Site	SNP	T	TCGA-KL-8334-01A-11D-2310-10	52246468	76118234	31231306	49	867											
LCMT2	9836	ucsc.edu	37	chr15	43622621	43622621	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcggccagggaacgcttgcTgagggcgctgctgtcgttgg	18	11	0	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	43622621	T	C	43622621	3	2	12	1	0	0	0	0	1	0	0	0	8741	1580	55	2	1997	2	LCMT2	15	43622621	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10		43622621	58908771	50	868											
ADAMTS7	11173	broad.mit.edu;hgsc.bcm.edu	37	chr15	79060504	79060504	+	Frame_Shift_Del	DEL	C	C	-													cagggctgctcgctgcacttCctctgttggtcatcaggccg					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		-	79060504	C	-	79060504	7	5	12	1	0	1	0	1	0	0	0	0	271	854	30	0	2476	0	ADAMTS7	15	79060504	Frame_Shift_Del	DEL	C	TCGA-KL-8334-01A-11D-2310-10	35437883	79060504	23470888	51	869	24	2									
ADAMTS7	11173	bcgsc.ca	37	chr15	79060505	79060505	+	Frame_Shift_Del	DEL	C	C	-													agggctgctcgctgcacttcCtctgttggtcatcaggccgg					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		-	79060505	C	-	79060505	7	5	12	1	0	1	0	1	0	0	0	0	271	681	24	0	2477	0	ADAMTS7	15	79060505	Frame_Shift_Del	DEL	C	TCGA-KL-8334-01A-11D-2310-10	1	79060505	23470887	52	870	24	2									
DECR2	26063	ucsc.edu	37	chr16	461365	461365	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgctgccctccaggtggCcctcaggccagcctgagcac	11	17	2	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	461365	C	T	461365	2	4	12	1	0	0	0	0	0	0	0	1	4415	726	26	3		3	DECR2	16	461365	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		461365	89893388	53	871											
TBC1D24	57465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	2547069	2547069	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctcctgcagatggccaAtgagaaagccctgaagcaga	11	12	0	4	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	2547069	A	G	2547069	3	3	12	1	0	0	0	0	1	0	0	0	15715	101	4	4	922	4	TBC1D24	16	2547069	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	2085704	2547069	87807684	54	872											
SRRM2	23524	hgsc.bcm.edu	37	chr16	2819139	2819139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcttcctcctcctcttc	0	24	3	0	rs142230842	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	2819139	C	T	2819139	2	4	12	1	0	0	0	0	0	0	0	1	15269	668	24	4		4	SRRM2	16	2819139	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	272070	2819139	87535614	55	873											
KIAA0430	9665	broad.mit.edu	37	chr16	15718883	15718883	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcacatacttctgactggTtttgtaaacgggttctgcca	8	9	3	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	15718883	T	C	15718883	3	2	12	1	0	0	0	0	1	0	0	0	8238	1725	60	2	3206	2	KIAA0430	16	15718883	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	12899744	15718883	74635870	56	874											
LYRM1	57149	bcgsc.ca	37	chr16	20926885	20926885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggtctgaagatgacaaCggcaacacgacaagaagtcc	13	9	1	4	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	20926885	C	T	20926885	3	4	12	1	0	0	0	0	1	0	0	0	9192	536	19	1	10	1	LYRM1	16	20926885	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	5208002	20926885	69427868	57	875											
IRX3	79191	ucsc.edu	37	chr16	54318841	54318841	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagacggcgaggccacggCcactggtggtggcgctggag	19	11	0	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	54318841	C	A	54318841	3	1	12	1	0	0	0	0	1	0	0	0	7906	739	26	5	565	5	IRX3	16	54318841	Missense_Mutation	SNP	C	TCGA-KL-8334-01A-11D-2310-10	33391956	54318841	36035912	58	876											
NFAT5	10725	bcgsc.ca	37	chr16	69724942	69724942	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgattaagagtgaagatgTtactccaatggaagtaacag	10	4	0	4	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	69724942	T	C	69724942	3	2	12	1	0	0	0	0	1	0	0	0	10439	1725	60	2	1920	2	NFAT5	16	69724942	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	15406101	69724942	20629811	59	877											
CLEC18A	348174	mdanderson.org	37	chr16	69988260	69988260	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagtgacagcctggcccaGctggctcaagccagggcagc	15	13	1	1	rs74456876		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	69988260	G	A	69988260	2	1	12	1	0	0	0	0	0	0	0	1	3531	962	34	4		4	CLEC18A	16	69988260	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	263318	69988260	20366493	60	878											
HOXB4	3214	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	46654334	46654334	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaagacctgctggcgcgtgTaggcggtccgagagcgcttg	16	12	0	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	46654334	T	A	46654334	3	1	12	1	0	0	0	0	1	0	0	0	7361	1638	57	5	253	5	HOXB4	17	46654334	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10		46654334	34540876	61	879											
SGCA	6442	hgsc.bcm.edu	37	chr17	48245013	48245013	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagacctgccccggtggctCcgctacacccagcgcagccc	10	21	0	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	48245013	C	T	48245013	2	4	12	1	0	0	0	0	0	0	0	1	14296	842	30	3		3	SGCA	17	48245013	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	1590679	48245013	32950197	62	880											
KIF19	124602	ucsc.edu	37	chr17	72339295	72339295	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtctccatgtcctaccTggaggtgagtcccccagcct	11	14	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	72339295	T	C	72339295	3	2	12	1	0	0	0	0	1	0	0	0	8343	1580	55	2	470	2	KIF19	17	72339295	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	24094282	72339295	8855915	63	881											
DOT1L	84444	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	2207667	2207667	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctactacctgcacactatCgaccgcaccatagtgagtat	6	14	0	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	2207667	C	T	2207667	2	4	12	1	0	0	0	0	0	0	0	1	4746	874	31	1		1	DOT1L	19	2207667	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10		2207667	56921316	64	882											
MUC16	94025	mdanderson.org	37	chr19	8999479	8999479	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcagctcccagtatagctGctctctgtccagtccagggc	10	15	2	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	8999479	G	T	8999479	3	4	12	1	0	0	0	0	1	0	0	0	10051	1328	46	5	2943	5	MUC16	19	8999479	Missense_Mutation	SNP	G	TCGA-KL-8334-01A-11D-2310-10	6791812	8999479	50129504	65	883											
ICAM5	7087	mdanderson.org	37	chr19	10407169	10407169	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaggcgaggccgtgtgtctGaacggagcgggcggcggcgc	20	11	2	1	rs710845	byfrequency	TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	10407169	G	C	10407169	2	2	12	1	0	0	0	0	0	0	0	1	7544	1277	45	5		5	ICAM5	19	10407169	Silent	SNP	G	TCGA-KL-8334-01A-11D-2310-10	1407690	10407169	48721814	66	884											
LRP3	4037	broad.mit.edu	37	chr19	33697008	33697008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaaccagaaaagctgtccCgacggcgccgacgagaagaa	11	12	0	3	rs201999025		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		T	33697008	C	T	33697008	2	4	12	1	0	0	0	0	0	0	0	1	9030	639	23	1		1	LRP3	19	33697008	Silent	SNP	C	TCGA-KL-8334-01A-11D-2310-10	23289839	33697008	25431975	67	885											
GPCPD1	56261	broad.mit.edu	37	chr20	5548180	5548180	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttttactggaatttcaaaTaattcaactggatcagcatc	5	8	4	0	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	5548180	T	A	5548180	3	1	12	1	0	0	0	0	1	0	0	0	6660	1403	49	5	874	5	GPCPD1	20	5548180	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10		5548180	57477340	68	886											
USP9X	8239	broad.mit.edu;hgsc.bcm.edu	37	chrX	41088984	41088985	+	Frame_Shift_Ins	INS	-	-	A													atttcttggagagatcacatINSagtgctaggatgacacttgc					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	41088985	-	A	41088984	7	5	12	1	0	1	1	0	0	0	0	0	17196	1403	49	0	7549	0	USP9X	23	41088984	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10		41088984	114181576	69	887	25	2									
USP9X	8239	bcgsc.ca	37	chrX	41088985	41088986	+	Frame_Shift_Ins	INS	-	-	A													tttcttggagagatcacataINSgtgctaggatgacacttgca					novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		A	41088986	-	A	41088985	7	5	12	1	0	1	1	0	0	0	0	0	17196	420	15	0	7550	0	USP9X	23	41088985	Frame_Shift_Ins	INS	-	TCGA-KL-8334-01A-11D-2310-10	1	41088985	114181575	70	888	25	2									
SHROOM4	57477	broad.mit.edu	37	chrX	50376364	50376364	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcagatttccccagaacaAtaaatgcaaggatcatggac	10	9	1	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	50376364	A	G	50376364	2	3	12	1	0	0	0	0	0	0	0	1	14394	108	4	4		4	SHROOM4	23	50376364	Silent	SNP	A	TCGA-KL-8334-01A-11D-2310-10	9287379	50376364	104894196	71	889											
PASD1	139135	broad.mit.edu	37	chrX	150791421	150791421	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccttagagtttcctgtggTctttagtggcttgttttcca	9	8	1	1	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		C	150791421	T	C	150791421	3	2	12	1	0	0	0	0	1	0	0	0	11550	1667	58	2	453	2	PASD1	23	150791421	Missense_Mutation	SNP	T	TCGA-KL-8334-01A-11D-2310-10	100415057	150791421	4479139	72	890											
ATP2B3	492	broad.mit.edu	37	chrX	152823628	152823628	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcatcctgaccgatgacaActtcaccagcatcgtcaagg	7	14	3	2	novel		TCGA-KL-8334-01A-11D-2310-10	TCGA-KL-8334-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	94434272-4cbd-4b4d-bd98-44f18526dd69	dd7bfe59-20ee-4f8c-8a95-8eb1d0846091		G	152823628	A	G	152823628	3	3	12	1	0	0	0	0	1	0	0	0	1145	43	2	2	2550	2	ATP2B3	23	152823628	Missense_Mutation	SNP	A	TCGA-KL-8334-01A-11D-2310-10	2032207	152823628	2446932	73	891											
ACAP3	116983	ucsc.edu;bcgsc.ca	37	chr1	1229272	1229272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgctgctcttggtccaggGcgtgctggtccgcgccccgc	14	18	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	1229272	G	A	1229272	3	1	13	1	0	0	0	0	1	0	0	0	120	1203	42	3	221	3	ACAP3	1	1229272	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		1229272	248021349	1	892											
CC2D1B	200014	ucsc.edu	37	chr1	52825206	52825206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaggacagcaccgaatcTctgcagaagttggaaaagca	10	11	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	52825206	T	C	52825206	3	2	13	1	0	0	0	0	1	0	0	0	2752	1565	54	2	1697	2	CC2D1B	1	52825206	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	51595934	52825206	196425415	2	893											
PCSK9	255738	ucsc.edu	37	chr1	55505643	55505643	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgaggagctggtgctagccTtgcgttccgaggaggacggc	17	10	0	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	55505643	T	C	55505643	2	2	13	1	0	0	0	0	0	0	0	1	11685	1606	56	2		2	PCSK9	1	55505643	Silent	SNP	T	TCGA-KL-8335-01A-11D-2310-10	2680437	55505643	193744978	3	894											
AK5	26289	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	77759511	77759511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaaactttccatatcggcGgtatgaccggctccctccaa	7	15	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	77759511	G	A	77759511	3	1	13	1	0	0	0	0	1	0	0	0	443	1116	39	1	291	1	AK5	1	77759511	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	22253868	77759511	171491110	4	895											
DNM3	26052	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	171890935	171890935	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaacaagacgacctcttgTgctgcagcttgttacttcta	8	10	2	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	171890935	T	C	171890935	3	2	13	1	0	0	0	0	1	0	0	0	4710	1696	59	2	215	2	DNM3	1	171890935	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	94131424	171890935	77359686	5	896											
ENAH	55740	mdanderson.org	37	chr1	225755060	225755060	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caccagctggcacccacttcTtattggcatcatcataaacc	5	15	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	225755060	T	A	225755060	3	1	13	1	0	0	0	0	1	0	0	0	5150	1609	56	5	1769	5	ENAH	1	225755060	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	53864125	225755060	23495561	6	897											
EXO1	9156	bcgsc.ca	37	chr1	242042205	242042205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttgacacagatgtagcaCgtaattcaagtgatgacatt	10	6	1	4	rs145789527		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	242042205	C	T	242042205	3	4	13	1	0	0	0	0	1	0	0	0	5339	536	19	1	1707	1	EXO1	1	242042205	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	16287145	242042205	7208416	7	898											
HNRNPU	3192	broad.mit.edu	37	chr1	245021520	245021520	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactgattttgaaggcaacGccaagatcttgtccattctt	7	9	2	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	245021520	G	A	245021520	2	1	13	1	0	0	0	0	0	0	0	1	7331	1074	38	1		1	HNRNPU	1	245021520	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	2979315	245021520	4229101	8	899											
MPHOSPH10	10199	broad.mit.edu;hgsc.bcm.edu	37	chr2	71366962	71366963	+	In_Frame_Ins	INS	-	-	AGG													aaaccacccttcaactggaaINSgatatcattaaacagaggat					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		AGG	71366963	-	AGG	71366962	7	5	13	1	0	1	1	0	0	0	0	0	9803	69	3	0	1300	0	MPHOSPH10	2	71366962	In_Frame_Ins	INS	-	TCGA-KL-8335-01A-11D-2310-10		71366962	171832411	9	900	26	2									
MPHOSPH10	10199	bcgsc.ca	37	chr2	71366963	71366964	+	In_Frame_Ins	INS	-	-	AGG													aaccacccttcaactggaagINSatatcattaaacagaggata					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		AGG	71366964	-	AGG	71366963	7	5	13	1	0	1	1	0	0	0	0	0	9803	942	33	0	1301	0	MPHOSPH10	2	71366963	In_Frame_Ins	INS	-	TCGA-KL-8335-01A-11D-2310-10	1	71366963	171832410	10	901	26	2									
PCGF1	84759	broad.mit.edu;hgsc.bcm.edu	37	chr2	74734182	74734183	+	Frame_Shift_Del	DEL	CT	CT	-													cactcacaagtatgaagacaCtctgtgatggtggtggcatc					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	74734183	CT	-	74734182	7	5	13	1	0	1	0	1	0	0	0	0	11653	564	20	0	625	0	PCGF1	2	74734182	Frame_Shift_Del	DEL	CT	TCGA-KL-8335-01A-11D-2310-10	3367219	74734182	168465191	11	902	27	2									
PCGF1	84759	bcgsc.ca	37	chr2	74734183	74734184	+	Frame_Shift_Del	DEL	CT	CT	-													actcacaagtatgaagacacTctgtgatggtggtggcatcc					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	74734184	CT	-	74734183	7	5	13	1	0	1	0	1	0	0	0	0	11653	1551	54	0	626	0	PCGF1	2	74734183	Frame_Shift_Del	DEL	CT	TCGA-KL-8335-01A-11D-2310-10	1	74734183	168465190	12	903	27	2									
RETSAT	54884	hgsc.bcm.edu;ucsc.edu	37	chr2	85573123	85573123	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcgggcgttccccggCagtaggtgttcataggtgtt	16	9	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	85573123	C	A	85573123	2	1	13	1	0	0	0	0	0	0	0	1	13330	697	25	5		5	RETSAT	2	85573123	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	10838940	85573123	157626250	13	904											
TUBA3D	113457	mdanderson.org	37	chr2	132240363	132240363	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagctctagagaaggattAtgaagaggtgggcgtggatt	17	4	1	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	132240363	A	G	132240363	3	3	13	1	0	0	0	0	1	0	0	0	16853	449	16	4	1313	4	TUBA3D	2	132240363	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	46667240	132240363	110959010	14	905											
TTN	7273	mdanderson.org;bcgsc.ca	37	chr2	179403401	179403401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaattgcttgtccttaataCgttccttattgctcttcttc	5	10	2	1	rs72648276		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	179403401	C	T	179403401	3	4	13	1	0	0	0	0	1	0	0	0	16841	536	19	1	8860	1	TTN	2	179403401	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	47163038	179403401	63795972	15	906											
STK11IP	114790	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr2	220473923	220473923	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggagcctgatgcccaCgcagctgtccaggtgatggc	15	12	0	2	rs185836682	by1000genomes;alternate_allele	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	220473923	C	T	220473923	2	4	13	1	0	0	0	0	0	0	0	1	15388	535	19	1		1	STK11IP	2	220473923	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	41070522	220473923	22725450	16	907											
PRR21	643905	mdanderson.org	37	chr2	240982219	240982219	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgggtgaagagccgtggAtgaagggccgtgggtgaaga	19	5	0	5	rs74006013		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	240982219	A	G	240982219	3	3	13	1	0	0	0	0	1	0	0	0	12681	333	12	4	991	4	PRR21	2	240982219	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	20508296	240982219	2217154	17	908											
HDLBP	3069	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	242178175	242178175	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgatggaatttctggggtaTagcacattctaatgtcacct	9	8	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	242178175	T	C	242178175	3	2	13	1	0	0	0	0	1	0	0	0	7083	1406	49	4	1204	4	HDLBP	2	242178175	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	1195956	242178175	1021198	18	909											
ARPP21	10777	mdanderson.org;bcgsc.ca	37	chr3	35833882	35833882	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttcttcgcaggttaccagCcagtcttgtctggtcaacag	9	11	4	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	35833882	C	A	35833882	3	1	13	1	0	0	0	0	1	0	0	0	982	739	26	5	2120	5	ARPP21	3	35833882	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		35833882	162188548	19	910											
PXK	54899	broad.mit.edu	37	chr3	58395318	58395318	+	Frame_Shift_Del	DEL	A	A	-													catggatctgaggaggaaagAaaaaaaagaaagattttagc					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	58395318	A	-	58395318	7	5	13	1	0	1	0	1	0	0	0	0	12941	243	9	0	1426	0	PXK	3	58395318	Frame_Shift_Del	DEL	A	TCGA-KL-8335-01A-11D-2310-10	22561436	58395318	139627112	20	911											
NFKBIZ	64332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	101573954	101573954	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atcagcatctcattgtgcagGatctggtgaacatcggggca	12	9	3	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	101573954	G	T	101573954	3	4	13	1	0	0	0	0	1	0	0	0	10462	1174	41	5	1518	5	NFKBIZ	3	101573954	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	43178636	101573954	96448476	21	912											
KIAA2018	205717	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	113375944	113375944	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagaggtctgggtgccctGaacaagattcctctttttct	10	10	3	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	113375944	G	C	113375944	3	2	13	1	0	0	0	0	1	0	0	0	8329	1299	45	5	2156	5	KIAA2018	3	113375944	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	11801990	113375944	84646486	22	913											
MUC4	4585	mdanderson.org	37	chr3	195510053	195510053	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgtcggtgacaggaagagGggtggtgtgacctgtggatg	20	5	0	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	195510053	G	A	195510053	3	1	13	1	0	0	0	0	1	0	0	0	10056	1232	43	3		3	MUC4	3	195510053	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	82134109	195510053	2512377	23	914			1	10		2	2	16	N	T_G	4.603094e-05
MUC4	4585	mdanderson.org	37	chr3	195510068	195510068	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaggggtggtgtgacctgTggatgctgaggaagggctgg	21	4	0	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	195510068	T	A	195510068	3	1	13	1	0	0	0	0	1	0	0	0	10056	1696	59	5		5	MUC4	3	195510068	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	15	195510068	2512362	24	915			1	10		2	2	16	N	T_G	4.603094e-05
DRD5	1816	mdanderson.org	37	chr4	9784542	9784542	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagaccaaggttctcaagAccctgtcggtgatcatgggg	14	9	2	3	rs2227851		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	9784542	A	C	9784542	3	2	13	1	0	0	0	0	1	0	0	0	4797	275	10	5	891	5	DRD5	4	9784542	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10		9784542	181369734	25	916											
ANAPC4	29945	broad.mit.edu;mdanderson.org	37	chr4	25415322	25415322	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattgcattttgtgaaaagGcggatggagaatattattga	11	3	1	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	25415322	G	A	25415322	2	1	13	1	0	0	0	0	0	0	0	1	604	1194	42	3		3	ANAPC4	4	25415322	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	15630780	25415322	165738954	26	917											
DSPP	1834	broad.mit.edu	37	chr4	88536147	88536155	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-													tgacagcagtgatagtagtgAcagcagcaacagcagtgata					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	88536155	ACAGCAGCA	-	88536147	7	5	13	1	0	1	0	1	0	0	0	0	4819	275	10	0	2347	0	DSPP	4	88536147	In_Frame_Del	DEL	ACAGCAGCA	TCGA-KL-8335-01A-11D-2310-10	63120825	88536147	102618129	27	918											
ADH1B	125	broad.mit.edu;mdanderson.org	37	chr4	100234996	100234996	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accatggtgtcaagccgaccGatgacttcaaacgaaaaatc	8	11	2	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	100234996	G	A	100234996	2	1	13	1	0	0	0	0	0	0	0	1	308	1048	37	1		1	ADH1B	4	100234996	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	11698849	100234996	90919280	28	919											
CENPE	1062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	104101509	104101509	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggaagaagaggtcaccaGcatccgtgttaagttttcaa	12	7	2	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	104101509	G	C	104101509	3	2	13	1	0	0	0	0	1	0	0	0	3259	962	34	5	7052	5	CENPE	4	104101509	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	3866513	104101509	87052767	29	920											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	5489408	5489408	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgattgtcagctgcctagagGaagtcagtgccctgagcaca	12	11	2	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	5489408	G	T	5489408	4	4	13	1	0	0	0	0	0	1	0	0	8263	1175	41	5	6840	5	KIAA0947	5	5489408	Nonsense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		5489408	175425852	30	921											
RBM27	54439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	145598649	145598649	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttttgtgctgatcaacttgAtgtctttttacaaaaaggta	7	6	2	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	145598649	A	T	145598649	3	4	13	1	0	0	0	0	1	0	0	0	13219	333	12	5	167	5	RBM27	5	145598649	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	140109241	145598649	35316611	31	922											
C6orf201	404220	bcgsc.ca	37	chr6	4087901	4087901	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctaacctccacgagctgcTtccgaatcacctgatggaga	9	13	2	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	4087901	T	C	4087901	3	2	13	1	0	0	0	0	1	0	0	0	2372	1609	56	2	28	2	C6orf201	6	4087901	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10		4087901	167027166	32	923											
NOTCH4	4855	hgsc.bcm.edu	37	chr6	32168996	32168996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctagcttttcttcagccCgggccccaggataggggtac	11	14	2	0	rs8192573	alternate_allele	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	32168996	C	T	32168996	3	4	13	1	0	0	0	0	1	0	0	0	10630	652	23	1	2010	1	NOTCH4	6	32168996	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	28081095	32168996	138946071	33	924											
TDRD6	221400	broad.mit.edu	37	chr6	46661608	46661608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactacctacagcccagctgCctttagatgacaagatggat	8	11	0	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	46661608	C	T	46661608	3	4	13	1	0	0	0	0	1	0	0	0	15838	739	26	3	5745	3	TDRD6	6	46661608	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	14492612	46661608	124453459	34	925											
AMD1	262	hgsc.bcm.edu	37	chr6	111214753	111214753	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcttgattgccagagtgcTatgttcaatgattacaattt	8	7	2	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	111214753	T	C	111214753	2	2	13	1	0	0	0	0	0	0	0	1	566	1509	53	2		2	AMD1	6	111214753	Silent	SNP	T	TCGA-KL-8335-01A-11D-2310-10	64553145	111214753	59900314	35	926											
FAM184A	79632	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	119345242	119345242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttaattttcctatagtttttCgtaaaattgcttcttgtccc	4	8	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	119345242	C	T	119345242	3	4	13	1	0	0	0	0	1	0	0	0	5555	884	31	1	2594	1	FAM184A	6	119345242	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	8130489	119345242	51769825	36	927											
ABCB5	340273	broad.mit.edu;bcgsc.ca	37	chr7	20698214	20698214	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aattgctcgtgccttagttcGaaaccccaagattctgattt	7	10	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	20698214	G	A	20698214	3	1	13	1	0	0	0	0	1	0	0	0	44	1058	37	1	1672	1	ABCB5	7	20698214	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		20698214	138440449	37	928											
DPY19L1	23333	mdanderson.org	37	chr7	34987258	34987258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atacctttctaacaatagcaAcaaacactacaagaacaact	2	11	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	34987258	A	G	34987258	3	3	13	1	0	0	0	0	1	0	0	0	4777	43	2	2	800	2	DPY19L1	7	34987258	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	14289044	34987258	124151405	38	929											
CALD1	800	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	134617794	134617794	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acactcaagtggaaggggatGatgaggccgcattcctggag	15	8	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	134617794	G	T	134617794	3	4	13	1	0	0	0	0	1	0	0	0	2606	1290	45	5	341	5	CALD1	7	134617794	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	99630536	134617794	24520869	39	930											
EPHA1	2041	broad.mit.edu;hgsc.bcm.edu	37	chr7	143095693	143095693	+	Splice_Site	DEL	C	C	-													cagcccctctcagcctctcaCctgcatgccccatgctgatg					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	143095693	C	-	143095693	8	5	13	1	0	1	0	1	0	0	1	0	5204	521	18	0	1645	0	EPHA1	7	143095693	Splice_Site	DEL	C	TCGA-KL-8335-01A-11D-2310-10	8477899	143095693	16042970	40	931	28	2									
EPHA1	2041	bcgsc.ca	37	chr7	143095694	143095694	+	Frame_Shift_Del	DEL	C	C	-													agcccctctcagcctctcacCtgcatgccccatgctgatgc					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	143095694	C	-	143095694	7	5	13	1	0	1	0	1	0	0	0	0	5204	695	24	0	1646	0	EPHA1	7	143095694	Frame_Shift_Del	DEL	C	TCGA-KL-8335-01A-11D-2310-10	1	143095694	16042969	41	932	28	2									
CLDN23	137075	broad.mit.edu	37	chr8	8560233	8560234	+	Frame_Shift_Ins	INS	-	-	T													gcgctgctggcaggacgagcINSccaacttcgtgctggcaggg					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	8560234	-	T	8560233	7	5	13	1	0	1	1	0	0	0	0	0	3513	739	26	0	327	0	CLDN23	8	8560233	Frame_Shift_Ins	INS	-	TCGA-KL-8335-01A-11D-2310-10		8560233	137803789	42	933											
PSD3	23362	broad.mit.edu	37	chr8	18725567	18725567	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccccttaacgtgctcctcTtgttcgctgatcctggaaag	8	14	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	18725567	T	C	18725567	2	2	13	1	0	0	0	0	0	0	0	1	12737	1606	56	2		2	PSD3	8	18725567	Silent	SNP	T	TCGA-KL-8335-01A-11D-2310-10	10165334	18725567	127638455	43	934											
FBXO16	157574	broad.mit.edu	37	chr8	28309794	28309794	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccatggggtcacggttgTctaggtaattaaaacgaatg	11	7	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	28309794	T	C	28309794	3	2	13	1	0	0	0	0	1	0	0	0	5778	1667	58	2	187	2	FBXO16	8	28309794	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	9584227	28309794	118054228	44	935											
OPRK1	4986	mdanderson.org;bcgsc.ca	37	chr8	54141872	54141872	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	actagtcatactggtttattCatcccatcgatgtccctcag	6	12	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	54141872	C	A	54141872	3	1	13	1	0	0	0	0	1	0	0	0	10964	826	29	5	18	5	OPRK1	8	54141872	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	25832078	54141872	92222150	45	936											
EPPK1	83481	ucsc.edu;bcgsc.ca	37	chr8	144944498	144944498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctctctgggctgtgagggTccatgatggttccggtggcc	17	10	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	144944498	T	C	144944498	3	2	13	1	0	0	0	0	1	0	0	0	5229	1667	58	2	4342	2	EPPK1	8	144944498	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	90802626	144944498	1419524	46	937											
UHRF2	115426	broad.mit.edu	37	chr9	6460652	6460652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccattttgaaatggaatgaaCtaaatgttggtgatgtggta	11	3	0	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	6460652	C	T	6460652	2	4	13	1	0	0	0	0	0	0	0	1	17076	564	20	4		4	UHRF2	9	6460652	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10		6460652	134752779	47	938											
PRSS3	5646	mdanderson.org	37	chr9	33796801	33796801	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctcactgctacaagacGtaagtgtggggcccctgact	12	12	1	2	rs143707562		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	33796801	G	A	33796801	5	1	13	1	0	0	0	0	0	0	1	0	12711	1159	40	1	422	1	PRSS3	9	33796801	Splice_Site	SNP	G	TCGA-KL-8335-01A-11D-2310-10	27336149	33796801	107416630	48	939											
ANXA1	301	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	75783993	75783993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatcaggattatggtttccCgttctgaaattgacatgaat	9	6	2	4	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	75783993	C	T	75783993	3	4	13	1	0	0	0	0	1	0	0	0	714	652	23	1	949	1	ANXA1	9	75783993	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	41987192	75783993	65429438	49	940											
SPTLC1	10558	broad.mit.edu;hgsc.bcm.edu	37	chr9	94808322	94808322	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccgcacttttccttcaaCactgcaaaaatacctagatg	5	12	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	94808322	C	T	94808322	2	4	13	1	0	0	0	0	0	0	0	1	15223	465	17	4		4	SPTLC1	9	94808322	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	19024329	94808322	46405109	50	941											
ZNF462	58499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	109689044	109689044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaaagaatgcatcccacgGtgaagatcaacaacgcgatg	9	11	1	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	109689044	G	A	109689044	3	1	13	1	0	0	0	0	1	0	0	0	18031	1261	44	3	2857	3	ZNF462	9	109689044	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	14880722	109689044	31524387	51	942											
ZNF462	58499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	109691641	109691641	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtctatgcagatgagcatgaGaagcccacactgatggaaga	12	8	1	5	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	109691641	G	A	109691641	2	1	13	1	0	0	0	0	0	0	0	1	18031	933	33	4		4	ZNF462	9	109691641	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	2597	109691641	31521790	52	943											
ZFP37	7539	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	115806036	115806036	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcatagggtttcacacaagCttgaggtttttcatgcttag	9	7	3	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	115806036	C	A	115806036	3	1	13	1	0	0	0	0	1	0	0	0	17753	797	28	5	1034	5	ZFP37	9	115806036	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	6114395	115806036	25407395	53	944											
MEGF9	1955	ucsc.edu	37	chr9	123476127	123476127	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcgggggtcggggtccgGggagtcgtgggcgccggtac	22	9	0	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	123476127	G	A	123476127	2	1	13	1	0	0	0	0	0	0	0	1	9541	1219	43	3		3	MEGF9	9	123476127	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	7670091	123476127	17737304	54	945											
AKR1C4	1109	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	5254675	5254675	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtgctctgggaacccaaCgacataaactatggtaataa	8	9	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	5254675	C	T	5254675	4	4	13	1	0	0	0	0	0	1	0	0	472	528	19	1	689	1	AKR1C4	10	5254675	Nonsense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		5254675	130280072	55	946											
SPAG6	9576	broad.mit.edu	37	chr10	22675803	22675803	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgatattgcaaagcattCtccagagttagcacagacag	9	9	1	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	22675803	C	T	22675803	3	4	13	1	0	0	0	0	1	0	0	0	15082	913	32	4	611	4	SPAG6	10	22675803	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	17421128	22675803	112858944	56	947											
ZNF365	22891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	64136341	64136341	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctatgtgcagacctacaCtgccatggacctccatgcag	9	14	0	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	64136341	C	A	64136341	3	1	13	1	0	0	0	0	1	0	0	0	17974	565	20	5	391	5	ZNF365	10	64136341	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	41460538	64136341	71398406	57	948											
SORCS3	22986	broad.mit.edu;mdanderson.org	37	chr10	106970992	106970992	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcagccttggtcaaagcTaccttaacagcactgggtaa	9	11	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	106970992	T	C	106970992	3	2	13	1	0	0	0	0	1	0	0	0	15030	1522	53	2	2425	2	SORCS3	10	106970992	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	42834651	106970992	28563755	58	949											
MUC5B	727897	mdanderson.org	37	chr11	1271809	1271809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacctccacagtgcttaccGccacggccaccacaaccggg	8	19	0	0	rs2334756	byfrequency	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	1271809	G	A	1271809	3	1	13	1	0	0	0	0	1	0	0	0	10057	1087	38	1	13830	1	MUC5B	11	1271809	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		1271809	133734707	59	950											
FOLH1	2346	broad.mit.edu;mdanderson.org	37	chr11	49175930	49175930	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcaaacaccatccctcctcGaacctgggccacagtgaggt	8	16	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	49175930	G	A	49175930	4	1	13	1	0	0	0	0	0	1	0	0	6028	1066	37	1	530	1	FOLH1	11	49175930	Nonsense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	47904121	49175930	85830586	60	951											
OR9I1	219954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	57886020	57886020	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagcgacctttctgaaggcGtcttttacatctttgtttct	7	10	4	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	57886020	G	A	57886020	2	1	13	1	0	0	0	0	0	0	0	1	11332	1136	40	1		1	OR9I1	11	57886020	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	8710090	57886020	77120496	61	952											
INTS5	80789	hgsc.bcm.edu;ucsc.edu	37	chr11	62417411	62417411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgggctgagagttggtgGcccagaatggggtctacgcc	16	11	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	62417411	G	A	62417411	2	1	13	1	0	0	0	0	0	0	0	1	7842	1190	42	3		3	INTS5	11	62417411	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	4531391	62417411	72589105	62	953											
KDM2A	22992	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	67022407	67022407	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattgccaacgtcaccttgAtcgaccttcgaggatgcaag	10	12	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	67022407	A	T	67022407	3	4	13	1	0	0	0	0	1	0	0	0	8185	333	12	5	3448	5	KDM2A	11	67022407	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	4604996	67022407	67984109	63	954											
PLEKHB1	58473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	73360070	73360070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgacaggtcccgcctgactCcgctctggaaagtccttttg	10	14	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	73360070	C	A	73360070	3	1	13	1	0	0	0	0	1	0	0	0	12144	855	30	5	38	5	PLEKHB1	11	73360070	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	6337663	73360070	61646446	64	955											
PDE3A	5139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	20522512	20522512	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaaggaggcggcggcggcGgaggaggaggaagcagcccc	21	9	0	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	20522512	G	A	20522512	2	1	13	1	0	0	0	0	0	0	0	1	11716	1103	39	1		1	PDE3A	12	20522512	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10		20522512	113329383	65	956											
NT5DC3	51559	broad.mit.edu	37	chr12	104171822	104171822	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtctgtgcggaacaggcTtccaaactgggcattgaaga	13	9	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		C	104171822	T	C	104171822	3	2	13	1	0	0	0	0	1	0	0	0	10771	1609	56	2	218	2	NT5DC3	12	104171822	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	83649310	104171822	29680073	66	957											
EBPL	84650	broad.mit.edu	37	chr13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactgaactggtttctttcTgatgcattttcttgagttct	7	8	5	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	50235138	T	G	50235138	3	3	13	1	0	0	0	0	1	0	0	0	4924	1580	55	5	37	5	EBPL	13	50235138	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10		50235138	64934740	67	958											
C14orf93	60686	hgsc.bcm.edu	37	chr14	23468114	23468114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgggggtgctgggaggaGgattcccaccctgggagcct	18	9	0	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	23468114	G	A	23468114	3	1	13	1	0	0	0	0	1	0	0	0	1794	1000	35	4	1521	4	C14orf93	14	23468114	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		23468114	83881426	68	959											
COCH	1690	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	31355089	31355089	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagcctctggtacagaagCtgtgcactcatgaacaaatg	9	9	2	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	31355089	C	G	31355089	3	3	13	1	0	0	0	0	1	0	0	0	3685	796	28	5	1086	5	COCH	14	31355089	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	7886975	31355089	75994451	69	960											
PYGL	5836	broad.mit.edu;mdanderson.org	37	chr14	51375670	51375670	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatagtattcttttgcctcGtacctgtggggtaggggtgg	14	7	2	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	51375670	G	A	51375670	2	1	13	1	0	0	0	0	0	0	0	1	12953	1140	40	1		1	PYGL	14	51375670	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	20020581	51375670	55973870	70	961											
PLD4	122618	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	105394159	105394159	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggctccagcccagcttgGgagcccctggaagcagaggc	14	14	0	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	105394159	G	T	105394159	3	4	13	1	0	0	0	0	1	0	0	0	12128	1241	43	5	246	5	PLD4	14	105394159	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	54018489	105394159	1955381	71	962											
GABRB3	2562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	26825479	26825479	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gactcacctgtggcgaagacAacattcctcgagaccagacg	10	13	1	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	26825479	A	T	26825479	2	4	13	1	0	0	0	0	0	0	0	1	6220	117	5	5		5	GABRB3	15	26825479	Silent	SNP	A	TCGA-KL-8335-01A-11D-2310-10		26825479	75705913	72	963											
AAGAB	79719	bcgsc.ca	37	chr15	67495157	67495166	+	Frame_Shift_Del	DEL	AATTCAGTGC	AATTCAGTGC	-													gtcaaaccctagtatgaataAttcagtgctcttcatcagat					novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	AATTCAGTGC	AATTCAGTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		-	67495166	AATTCAGTGC	-	67495157	7	5	13	1	0	1	0	1	0	0	0	0	15	116	4	0	1	0	AAGAB	15	67495157	Frame_Shift_Del	DEL	AATTCAGTGC	TCGA-KL-8335-01A-11D-2310-10	40669678	67495157	35036235	73	964											
HCN4	10021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	73617514	73617514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatggaggccaccagcttcCgacagttaaagttgatgatc	11	10	0	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	73617514	C	T	73617514	3	4	13	1	0	0	0	0	1	0	0	0	7057	652	23	1	1863	1	HCN4	15	73617514	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	6122357	73617514	28913878	74	965											
RPGRIP1L	23322	broad.mit.edu;mdanderson.org	37	chr16	53644927	53644927	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatagcttttaagatgtctCtctttgctttgttgttttct	7	6	3	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	53644927	C	G	53644927	3	3	13	1	0	0	0	0	1	0	0	0	13645	913	32	5	306	5	RPGRIP1L	16	53644927	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		53644927	36709826	75	966											
MBTPS1	8720	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	84132706	84132706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcgttggggcgtgacccGtttgatgtttggatgatctt	13	6	1	3	rs150244031	by1000genomes	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	84132706	G	A	84132706	3	1	13	1	0	0	0	0	1	0	0	0	9438	1144	40	1	2869	1	MBTPS1	16	84132706	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	30487779	84132706	6222047	76	967											
C17orf97	400566	mdanderson.org	37	chr17	263637	263637	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accccaaggccctcaagggcTtccaccccgaccccgaggcc	9	21	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	263637	T	A	263637	3	1	13	1	0	0	0	0	1	0	0	0	1909	1609	56	5		5	C17orf97	17	263637	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10		263637	80931573	77	968											
SLC13A5	284111	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	6606363	6606363	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccccgatgctggccgcGtagcagatgcacagggtcat	14	13	1	1	rs148755614	byfrequency;alternate_allele	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	6606363	G	T	6606363	4	4	13	1	0	0	0	0	0	1	0	0	14493	1140	40	5	1096	5	SLC13A5	17	6606363	Nonsense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	6342726	6606363	74588847	78	969											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7577018	7577018	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcttgtcctgcttgcttaCctcgcttagtgctccctggg	9	14	1	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	7577018	C	T	7577018	5	4	13	1	0	0	0	0	0	0	1	0	16486	521	18	3	366	3	TP53	17	7577018	Splice_Site	SNP	C	TCGA-KL-8335-01A-11D-2310-10	970655	7577018	73618192	79	970											
SGSH	6448	broad.mit.edu	37	chr17	78190941	78190941	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggcgtccaggtgcggggTggcgatggcgctgttgttgt	19	8	0	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	78190941	T	G	78190941	3	3	13	1	0	0	0	0	1	0	0	0	14318	1696	59	5	1397	5	SGSH	17	78190941	Missense_Mutation	SNP	T	TCGA-KL-8335-01A-11D-2310-10	70613923	78190941	3004269	80	971											
CEP192	55125	broad.mit.edu	37	chr18	13049583	13049583	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaatacgagataacagAgaaaatcagaggcaaaatga	10	4	1	5	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	13049583	A	G	13049583	2	3	13	1	0	0	0	0	0	0	0	1	3280	301	11	2		2	CEP192	18	13049583	Silent	SNP	A	TCGA-KL-8335-01A-11D-2310-10		13049583	65027665	81	972											
ZNF208	7757	mdanderson.org	37	chr19	22155783	22155783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctctccagtatgaattaCcttatgtttagtaaggattg	7	6	1	1	rs199604702		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	22155783	C	T	22155783	3	4	13	1	0	0	0	0	1	0	0	0	17871	507	18	3	1793	3	ZNF208	19	22155783	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		22155783	36973200	82	973											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	31770165	31770165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcatgcggctctgtgacacCtgctgcagcgtcttagccat	11	13	2	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	31770165	C	A	31770165	3	1	13	1	0	0	0	0	1	0	0	0	16730	680	24	5	2715	5	TSHZ3	19	31770165	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	9614382	31770165	27358818	83	974											
LRP3	4037	mdanderson.org	37	chr19	33697546	33697546	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acgcgcctggaggctgagttCgtgcggcgggaggcaccccc	17	14	0	1	rs1056041	byfrequency	TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	33697546	C	T	33697546	2	4	13	1	0	0	0	0	0	0	0	1	9030	883	31	1		1	LRP3	19	33697546	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10	1927381	33697546	25431437	84	975											
NPHS1	4868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	36342723	36342723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggagagaagccctgagcGtcgtccccagggccatcaca	13	14	1	2	rs150180768		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	36342723	G	A	36342723	3	1	13	1	0	0	0	0	1	0	0	0	10661	1145	40	1	3824	1	NPHS1	19	36342723	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10	2645177	36342723	22786260	85	976											
ZFP82	284406	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	36884930	36884930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatggttttcaattctttcCattatcttccactgggataa	5	10	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	36884930	C	T	36884930	3	4	13	1	0	0	0	0	1	0	0	0	17758	594	21	4	1290	4	ZFP82	19	36884930	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	542207	36884930	22244053	86	977											
ZNF260	339324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	37006030	37006030	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctacaaggttttgcttcagGctaaaagtttttctacattc	6	8	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	37006030	G	A	37006030	2	1	13	1	0	0	0	0	0	0	0	1	17907	1194	42	3		3	ZNF260	19	37006030	Silent	SNP	G	TCGA-KL-8335-01A-11D-2310-10	121100	37006030	22122953	87	978											
LTBP4	8425	bcgsc.ca	37	chr19	41112172	41112172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgagcgccccagatggacCttgtccaaccggctttgaaa	11	12	0	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	41112172	C	T	41112172	3	4	13	1	0	0	0	0	1	0	0	0	9148	681	24	4	1351	4	LTBP4	19	41112172	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	4106142	41112172	18016811	88	979											
CYP2A7	1549	broad.mit.edu;mdanderson.org	37	chr19	41384783	41384783	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcccttgcagcaacttaAaggcctgttgctgtggtcct	10	13	0	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	41384783	A	T	41384783	3	4	13	1	0	0	0	0	1	0	0	0	4194	14	1	5	791	5	CYP2A7	19	41384783	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	272611	41384783	17744200	89	980											
CYP2F1	1572	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	41628786	41628786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgatgaccacacataaCctgctctttggcggcaccaa	8	14	1	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	41628786	C	A	41628786	3	1	13	1	0	0	0	0	1	0	0	0	4202	506	18	5	904	5	CYP2F1	19	41628786	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	244003	41628786	17500197	90	981											
NLRP4	147945	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	56373450	56373450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atacctgagcttcaccctcaCgaaactctctcgtgatgaca	6	14	3	3	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	56373450	C	T	56373450	3	4	13	1	0	0	0	0	1	0	0	0	10558	536	19	1	2125	1	NLRP4	19	56373450	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	14744664	56373450	2755533	91	982											
ZNF773	374928	mdanderson.org	37	chr19	58016677	58016677	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgttttccttaggacttgcAtcttccaagacccatgaaat	6	11	1	2	rs199730365		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	58016677	A	G	58016677	2	3	13	1	0	0	0	0	0	0	0	1	18249	204	8	4		4	ZNF773	19	58016677	Silent	SNP	A	TCGA-KL-8335-01A-11D-2310-10	1643227	58016677	1112306	92	983											
KCNS1	3787	ucsc.edu	37	chr20	43726792	43726792	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggttctccatggtcagCcagaggcggcggcgcaggcg	17	14	2	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	43726792	C	T	43726792	4	4	13	1	0	0	0	0	0	1	0	0	8149	740	26	3	967	3	KCNS1	20	43726792	Nonsense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10		43726792	19298728	93	984											
SLC13A3	64849	bcgsc.ca	37	chr20	45212262	45212262	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgggacgggaagaagaAcaagatggtgacaatagcca	13	7	0	4	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		G	45212262	A	G	45212262	3	3	13	1	0	0	0	0	1	0	0	0	14491	43	2	2	660	2	SLC13A3	20	45212262	Missense_Mutation	SNP	A	TCGA-KL-8335-01A-11D-2310-10	1485470	45212262	17813258	94	985											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	57767954	57767954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgtacggggatgagaCgttcaaaaggatctaccaga	14	7	2	2	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	57767954	C	T	57767954	3	4	13	1	0	0	0	0	1	0	0	0	18288	536	19	1	1882	1	ZNF831	20	57767954	Missense_Mutation	SNP	C	TCGA-KL-8335-01A-11D-2310-10	12555692	57767954	5257566	95	986											
ERG	2078	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr21	39755470	39755470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggctggagggtggggcGccacaaagttcatcttctgt	17	8	3	0	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		A	39755470	G	A	39755470	3	1	13	1	0	0	0	0	1	0	0	0	5261	1087	38	1	148	1	ERG	21	39755470	Missense_Mutation	SNP	G	TCGA-KL-8335-01A-11D-2310-10		39755470	8374425	96	987											
SGSM3	27352	hgsc.bcm.edu;ucsc.edu	37	chr22	40802519	40802519	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccgtcgcagatggaggaCgcggagctgcttctgggggt	17	10	1	1	novel		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	40802519	C	T	40802519	2	4	13	1	0	0	0	0	0	0	0	1	14321	535	19	1		1	SGSM3	22	40802519	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10		40802519	10502047	97	988											
ABCD1	215	mdanderson.org	37	chrX	153006076	153006076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccaggtgatctacccggaCtcagtggaggacatgcaaag	13	10	2	1	rs199997983		TCGA-KL-8335-01A-11D-2310-10	TCGA-KL-8335-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8718bf72-de76-4fbd-9a6e-4692c67e38c1	3e52626f-e481-4859-8aab-36cd2b5f5375		T	153006076	C	T	153006076	2	4	13	1	0	0	0	0	0	0	0	1	60	564	20	4		4	ABCD1	23	153006076	Silent	SNP	C	TCGA-KL-8335-01A-11D-2310-10		153006076	2264484	98	989											
PER3	8863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	7887260	7887260	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagctgccggagccgccagaCagcagcagctcgaacaccgg	13	15	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	7887260	C	G	7887260	3	3	14	1	0	0	0	0	1	0	0	0	11810	477	17	5	2313	5	PER3	1	7887260	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		7887260	241363361	1	990											
LRRC40	55631	broad.mit.edu;bcgsc.ca	37	chr1	70641632	70641632	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttaagatgttctgcctctaAcatttcaatctggttttcac	5	9	5	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	70641632	A	T	70641632	3	4	14	1	0	0	0	0	1	0	0	0	9070	40	2	5	1006	5	LRRC40	1	70641632	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	62754372	70641632	178608989	2	991											
NBPF10	100132406	mdanderson.org	37	chr1	145296486	145296486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcactccggatgagccGgacaagtcccaggggcagga	13	14	1	1	rs3979106		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	145296486	G	A	145296486	2	1	14	1	0	0	0	0	0	0	0	1	10271	1103	39	1		1	NBPF10	1	145296486	Silent	SNP	G	TCGA-KL-8336-01A-11D-2310-10	74654854	145296486	103954135	3	992											
KCNN3	3782	broad.mit.edu	37	chr1	154841678	154841678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcttgttggctttggggaAggtggtgctgctggcggtgg	20	7	0	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	154841678	A	G	154841678	3	3	14	1	0	0	0	0	1	0	0	0	8141	72	3	2	1486	2	KCNN3	1	154841678	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	9545192	154841678	94408943	4	993											
IFI16	3428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	159023498	159023498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggggagttgagatctgtaaTtcatagtcacatcaaggttg	12	6	4	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	159023498	T	C	159023498	3	2	14	1	0	0	0	0	1	0	0	0	7572	1493	52	4	2127	4	IFI16	1	159023498	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	4181820	159023498	90227123	5	994											
F5	2153	broad.mit.edu	37	chr1	169511773	169511773	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaattctccagcaccaAgtgaaagtagacgtatccct	7	10	1	3	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	169511773	A	G	169511773	3	3	14	1	0	0	0	0	1	0	0	0	5388	72	3	2	4171	2	F5	1	169511773	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	10488275	169511773	79738848	6	995											
DHX9	1660	hgsc.bcm.edu	37	chr1	182827873	182827873	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttattttttaatagcctgaAgatccttctgtgccagttgc	7	9	1	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	182827873	A	G	182827873	2	3	14	1	0	0	0	0	0	0	0	1	4553	69	3	2		2	DHX9	1	182827873	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10	13316100	182827873	66422748	7	996											
OR2C3	81472	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	247695452	247695452	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatggcagcgtagcggtcaTaggacatggtggccagcagg	17	8	1	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	247695452	T	C	247695452	3	2	14	1	0	0	0	0	1	0	0	0	11072	1406	49	4	604	4	OR2C3	1	247695452	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	64867579	247695452	1555169	8	997											
DNAH6	1768	broad.mit.edu	37	chr2	84811142	84811142	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgaaagccttgaagatgAggggaatatagtgactcaaa	12	4	1	5	rs146616208		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	84811142	A	G	84811142	3	3	14	1	0	0	0	0	1	0	0	0	4642	304	11	2	2303	2	DNAH6	2	84811142	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10		84811142	158388231	9	998											
NCAPH	23397	ucsc.edu;bcgsc.ca	37	chr2	97034713	97034713	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtgcttctgttaggcaAaccacagggaagctggaaaa	11	7	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	97034713	A	G	97034713	3	3	14	1	0	0	0	0	1	0	0	0	10288	14	1	4	2064	4	NCAPH	2	97034713	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	12223571	97034713	146164660	10	999											
SLC35F5	80255	broad.mit.edu	37	chr2	114508020	114508020	+	Frame_Shift_Del	DEL	G	G	-													acaaaagcagcatgctttccGcgaagtcctcttgtacactg					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		-	114508020	G	-	114508020	7	5	14	1	0	1	0	1	0	0	0	0	14690	1074	38	0	1220	0	SLC35F5	2	114508020	Frame_Shift_Del	DEL	G	TCGA-KL-8336-01A-11D-2310-10	17473307	114508020	128691353	11	1000											
ABCA12	26154	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	215812198	215812198	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtgcagtggataattttCtttttgtgccataactgcac	8	9	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	215812198	C	T	215812198	3	4	14	1	0	0	0	0	1	0	0	0	30	913	32	4	624	4	ABCA12	2	215812198	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	101304178	215812198	27387175	12	1001											
QRICH1	54870	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	49114159	49114159	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacctgaacctgctgcggctGctgaacctggatctgctgtt	11	12	1	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	49114159	G	C	49114159	3	2	14	1	0	0	0	0	1	0	0	0	12971	1328	46	5	2074	5	QRICH1	3	49114159	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10		49114159	148908271	13	1002											
IL17RB	55540	broad.mit.edu	37	chr3	53886982	53886982	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atattcctaatgcaaatatgAatgaagatggcccttccatg	7	8	0	3	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	53886982	A	G	53886982	3	3	14	1	0	0	0	0	1	0	0	0	7701	246	9	4	457	4	IL17RB	3	53886982	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	4772823	53886982	144135448	14	1003											
ECE2	9718	broad.mit.edu	37	chr3	184002787	184002787	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactggcttgagttcctgTctttcttgctgtcaccattg	10	10	3	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	184002787	T	C	184002787	3	2	14	1	0	0	0	0	1	0	0	0	4927	1667	58	2	1994	2	ECE2	3	184002787	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	130115805	184002787	14019643	15	1004											
MUC4	4585	mdanderson.org	37	chr3	195507735	195507735	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatactgaggaaaggctGgtgacaggaagaggggtggc	20	4	0	3	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	195507735	G	T	195507735	2	4	14	1	0	0	0	0	0	0	0	1	10056	1335	47	5		5	MUC4	3	195507735	Silent	SNP	G	TCGA-KL-8336-01A-11D-2310-10	11504948	195507735	2514695	16	1005											
MUC4	4585	mdanderson.org	37	chr3	195509099	195509099	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagaggggtggTgtgacctgtggatgctgagg	21	4	0	4	rs71319804	bycluster;byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	195509099	T	C	195509099	3	2	14	1	0	0	0	0	1	0	0	0	10056	1696	59	2		2	MUC4	3	195509099	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	1364	195509099	2513331	17	1006											
FAT4	79633	ucsc.edu;mdanderson.org	37	chr4	126337737	126337737	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagtctggatcgggaaacAaaagagcgctttgtcttaat	11	7	2	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	126337737	A	C	126337737	2	2	14	1	0	0	0	0	0	0	0	1	5741	117	5	5		5	FAT4	4	126337737	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10		126337737	64816539	18	1007											
PRMT10	90826	broad.mit.edu;bcgsc.ca	37	chr4	148594863	148594863	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actgccttttggattgctgcAttataaattgtattcctctt	6	8	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	148594863	A	T	148594863	3	4	14	1	0	0	0	0	1	0	0	0	12625	214	8	5	2076	5	PRMT10	4	148594863	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	22257126	148594863	42559413	19	1008											
ADCY2	108	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	7707862	7707862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggagcacttgaatggcGcttataaagtggaggaggga	15	7	0	1	rs140842335	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	7707862	G	A	7707862	3	1	14	1	0	0	0	0	1	0	0	0	294	1087	38	1	1346	1	ADCY2	5	7707862	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10		7707862	173207398	20	1009											
AMACR	23600	broad.mit.edu	37	chr5	33989302	33989302	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagtatctcctcagtgtGttctcctatgaaaggatccc	7	11	4	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	33989302	G	C	33989302	3	2	14	1	0	0	0	0	1	0	0	0	562	1377	48	5	165	5	AMACR	5	33989302	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	26281440	33989302	146925958	21	1010											
WDR70	55100	bcgsc.ca	37	chr5	37721278	37721278	+	Missense_Mutation	SNP	G	G	T													catggttggaactggaaatgGattggctaaagtctattacg					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	37721278	G	T	37721278	3	4	14	1	0	0	0	0	1	0	0	0	17427	1174	41	5	1532	5	WDR70	5	37721278	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	3731976	37721278	143193982	22	1011	29	2									
WDR70	55100	broad.mit.edu	37	chr5	37721279	37721279	+	Silent	SNP	A	A	G													atggttggaactggaaatggAttggctaaagtctattacga					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	37721279	A	G	37721279	2	3	14	1	0	0	0	0	0	0	0	1	17427	320	12	4		4	WDR70	5	37721279	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10	1	37721279	143193981	23	1012	29	2									
MUC21	394263	mdanderson.org	37	chr6	30954890	30954890	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacgacctccagtggggccaAcacagccaccaactctgact	8	16	1	1	rs9262379		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	30954890	A	G	30954890	3	3	14	1	0	0	0	0	1	0	0	0	10055	43	2	2	944	2	MUC21	6	30954890	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10		30954890	140160177	24	1013											
DAAM2	23500	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	39867902	39867902	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcccagtgacaagtttgTccctgtcatgagcgacttca	11	11	2	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	39867902	T	C	39867902	3	2	14	1	0	0	0	0	1	0	0	0	4248	1667	58	2	2812	2	DAAM2	6	39867902	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	8913012	39867902	131247165	25	1014											
HSP90AB1	3326	mdanderson.org	37	chr6	44221047	44221047	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaaaccgccctgctatcttCtggcttttcccttgaggatc	8	13	2	2	rs61729441		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	44221047	C	T	44221047	3	4	14	1	0	0	0	0	1	0	0	0	7462	913	32	4	2035	4	HSP90AB1	6	44221047	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	4353145	44221047	126894020	26	1015											
ZNF12	7559	broad.mit.edu	37	chr7	6732196	6732196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttcttgaaggaacagggTtcgtttctacatcaaaagtt	8	6	3	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	6732196	T	C	6732196	3	2	14	1	0	0	0	0	1	0	0	0	17823	1725	60	2	1720	2	ZNF12	7	6732196	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10		6732196	152406467	27	1016											
HIP1	3092	hgsc.bcm.edu	37	chr7	75228522	75228522	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctggcgtgtttttcctttAcagccacttcctgcgtatta	7	11	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	75228522	A	G	75228522	3	3	14	1	0	0	0	0	1	0	0	0	7172	391	14	2	3069	2	HIP1	7	75228522	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	68496326	75228522	83910141	28	1017											
CROT	54677	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	87006732	87006732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caaatcctataacttgatttCcttttctaatggagtatttg	5	7	1	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	87006732	C	T	87006732	3	4	14	1	0	0	0	0	1	0	0	0	3923	855	30	3	1062	3	CROT	7	87006732	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	11778210	87006732	72131931	29	1018											
MUC17	140453	bcgsc.ca	37	chr7	100677833	100677833	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaagcactccattaacaCgtatgcctgtcagcaccaca	7	13	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	100677833	C	A	100677833	3	1	14	1	0	0	0	0	1	0	0	0	10052	536	19	5	3146	5	MUC17	7	100677833	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	13671101	100677833	58460830	30	1019			1	11		4	4	4115	N	G_C_A	1.448577e-07
MUC17	140453	mdanderson.org	37	chr7	100678932	100678932	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgccggtagtcagttctgAggctagcaccctttcagcaa	10	13	3	1	rs114941002	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	100678932	A	G	100678932	3	3	14	1	0	0	0	0	1	0	0	0	10052	304	11	2	4245	2	MUC17	7	100678932	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	1099	100678932	58459731	31	1020			1	11		4	4	4115	N	G_C_A	1.448577e-07
MUC17	140453	mdanderson.org	37	chr7	100681211	100681211	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtatgcctgtcagcaccacaGtggtggccagttctgcaatc	11	12	2	0	rs147094151	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	100681211	G	C	100681211	3	2	14	1	0	0	0	0	1	0	0	0	10052	1029	36	5	6524	5	MUC17	7	100681211	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	2279	100681211	58457452	32	1021			1	11		4	4	4115	N	G_C_A	1.448577e-07
MUC17	140453	mdanderson.org	37	chr7	100681947	100681947	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagttctgaggctagcacccAttccacaactcctgttgaca	7	14	1	2	rs139220229	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	100681947	A	T	100681947	3	4	14	1	0	0	0	0	1	0	0	0	10052	217	8	5	7260	5	MUC17	7	100681947	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	736	100681947	58456716	33	1022			1	11		4	4	4115	N	G_C_A	1.448577e-07
SLC4A2	6522	broad.mit.edu	37	chr7	150763999	150763999	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcggaagaatgccaaaggTtccacacagagtggccgaga	14	9	0	3	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	150763999	T	C	150763999	2	2	14	1	0	0	0	0	0	0	0	1	14752	1712	60	2		2	SLC4A2	7	150763999	Silent	SNP	T	TCGA-KL-8336-01A-11D-2310-10	50082052	150763999	8374664	34	1023											
LRRC24	441381	ucsc.edu	37	chr8	145748410	145748410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcgtgatgttgctgaggaAgagcatgccgctgcccgtgt	15	10	0	3	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	145748410	A	G	145748410	3	3	14	1	0	0	0	0	1	0	0	0	9051	72	3	2	554	2	LRRC24	8	145748410	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10		145748410	615612	35	1024											
SMARCA2	6595	mdanderson.org	37	chr9	2039818	2039818	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaAcagcagccgcagcagcagcc	12	16	0	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	2039818	A	G	2039818	2	3	14	1	0	0	0	0	0	0	0	1	14867	40	2	2		2	SMARCA2	9	2039818	Silent	SNP	A	TCGA-KL-8336-01A-11D-2310-10		2039818	139173613	36	1025											
BICD2	23299	ucsc.edu	37	chr9	95526797	95526797	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcggctcacctccttgagcTgctccatctcgctgcggata	9	16	2	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	95526797	T	C	95526797	3	2	14	1	0	0	0	0	1	0	0	0	1434	1580	55	2	2375	2	BICD2	9	95526797	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	93486979	95526797	45686634	37	1026											
GSN	2934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	124089710	124089710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgggggcccaggagctgcTcagggtgctgcgggcccaac	18	13	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	124089710	T	C	124089710	3	2	14	1	0	0	0	0	1	0	0	0	6883	1551	54	2	1943	2	GSN	9	124089710	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10	28562913	124089710	17123721	38	1027											
DNAJB12	54788	bcgsc.ca	37	chr10	74095605	74095605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcacctctgacagtcggCtgcagctgggggtgcccatc	13	15	1	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	74095605	C	T	74095605	3	4	14	1	0	0	0	0	1	0	0	0	4654	797	28	4	40	4	DNAJB12	10	74095605	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		74095605	61439142	39	1028											
USP54	159195	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	75331190	75331190	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtacttaccttgagagcgcAaaagatgcaggaatctccca	9	10	1	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	75331190	A	C	75331190	3	2	14	1	0	0	0	0	1	0	0	0	17191	130	5	5	4909	5	USP54	10	75331190	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	1235585	75331190	60203557	40	1029											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	chr10	89711960	89711962	+	In_Frame_Del	DEL	TGT	TGT	-													ggattatagaccagtggcacTgttgtttcacaagatgatgt					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		-	89711962	TGT	-	89711960	7	5	14	1	0	1	0	1	0	0	0	0	12827	1580	55	0	600	0	PTEN	10	89711960	In_Frame_Del	DEL	TGT	TCGA-KL-8336-01A-11D-2310-10	14380770	89711960	45822787	41	1030	30	2									
PTEN	5728	bcgsc.ca	37	chr10	89711961	89711963	+	In_Frame_Del	DEL	TGT	TGT	-													gattatagaccagtggcactGttgtttcacaagatgatgtt					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		-	89711963	TGT	-	89711961	7	5	14	1	0	1	0	1	0	0	0	0	12827	1364	48	0	601	0	PTEN	10	89711961	In_Frame_Del	DEL	TGT	TCGA-KL-8336-01A-11D-2310-10	1	89711961	45822786	42	1031	30	2									
MUC2	4583	mdanderson.org	37	chr11	1093274	1093274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cggcacacagaccccaacatCgacacccatcaccaccacca	4	21	1	1	rs11245949		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	1093274	C	T	1093274	3	4	14	1	0	0	0	0	1	0	0	0	10053	893	31	1	5211	1	MUC2	11	1093274	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		1093274	133913242	43	1032											
OR52L1	338751	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	6007311	6007311	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gacatgatggggtacatgatGaccaaagcggtgagtgagga	16	5	0	5	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	6007311	G	A	6007311	3	1	14	1	0	0	0	0	1	0	0	0	11204	1290	45	4	143	4	OR52L1	11	6007311	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	4914037	6007311	128999205	44	1033											
TRIM3	10612	hgsc.bcm.edu;ucsc.edu	37	chr11	6477762	6477762	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tagagcagcaccgagaggagCagctcgccttccgtgcgcgc	14	14	0	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	6477762	C	A	6477762	2	1	14	1	0	0	0	0	0	0	0	1	16609	697	25	5		5	TRIM3	11	6477762	Silent	SNP	C	TCGA-KL-8336-01A-11D-2310-10	470451	6477762	128528754	45	1034											
LTBP3	4054	hgsc.bcm.edu;mdanderson.org	37	chr11	65314277	65314277	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccgccctcaccgcgacagGccccgcccccctggctgcgg	11	24	1	0	rs148780991	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	65314277	G	C	65314277	3	2	14	1	0	0	0	0	1	0	0	0	9147	1203	42	5	1745	5	LTBP3	11	65314277	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	58836515	65314277	69692239	46	1035											
INTS4	92105	mdanderson.org	37	chr11	77612478	77612478	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcttaccctcgtgtagtTcgtgctgttactataagttg	8	9	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	77612478	T	G	77612478	2	3	14	1	0	0	0	0	0	0	0	1	7841	1770	62	5		5	INTS4	11	77612478	Silent	SNP	T	TCGA-KL-8336-01A-11D-2310-10	12298201	77612478	57394038	47	1036											
NARS2	79731	broad.mit.edu;bcgsc.ca	37	chr11	78277251	78277251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacccagaacgttagtcctaCacctaaagtgaggatattgt	8	9	0	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	78277251	C	T	78277251	3	4	14	1	0	0	0	0	1	0	0	0	10249	478	17	4	1037	4	NARS2	11	78277251	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	664773	78277251	56729265	48	1037											
DYNC2H1	79659	broad.mit.edu	37	chr11	103006273	103006273	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaacaacactggaatcatcAactgtacaaagctctggagc	8	10	3	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	103006273	A	T	103006273	3	4	14	1	0	0	0	0	1	0	0	0	4883	130	5	5	2317	5	DYNC2H1	11	103006273	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	24729022	103006273	32000243	49	1038											
TAS2R43	259289	mdanderson.org	37	chr12	11244602	11244602	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagttcttacttctacactaTtaaaagctggattcaacaca	4	9	3	0	rs200288366		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	11244602	T	C	11244602	3	2	14	1	0	0	0	0	1	0	0	0	15682	1493	52	4	706	4	TAS2R43	12	11244602	Missense_Mutation	SNP	T	TCGA-KL-8336-01A-11D-2310-10		11244602	122607293	50	1039											
KRT84	3890	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	52774146	52774146	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggactgagagtactcaCcggctctcctcgccctccag	10	16	2	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	52774146	C	T	52774146	5	4	14	1	0	0	0	0	0	0	1	0	8559	521	18	3	389	3	KRT84	12	52774146	Splice_Site	SNP	C	TCGA-KL-8336-01A-11D-2310-10	41529544	52774146	81077749	51	1040											
PPFIA2	8499	broad.mit.edu	37	chr12	81657079	81657079	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagctggtaatgtttctgAggacccaggcatcatgctga	11	10	2	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	81657079	A	G	81657079	3	3	14	1	0	0	0	0	1	0	0	0	12390	304	11	2	135	2	PPFIA2	12	81657079	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	28882933	81657079	52194816	52	1041											
MGA	23269	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	42003374	42003374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccaaagcagattagtttgCggcaggcacagcagcagcag	12	10	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	42003374	C	T	42003374	3	4	14	1	0	0	0	0	1	0	0	0	9617	759	27	1	2937	1	MGA	15	42003374	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		42003374	60528018	53	1042											
HAPLN3	145864	broad.mit.edu	37	chr15	89421386	89421386	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaacttccaggcggcaaAgagctgtcccaccttggcga	12	12	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	89421386	A	G	89421386	3	3	14	1	0	0	0	0	1	0	0	0	7014	72	3	2	188	2	HAPLN3	15	89421386	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	47418012	89421386	13110006	54	1043											
ZNF785	146540	ucsc.edu;bcgsc.ca	37	chr16	30596805	30596805	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgctggccgcaggcattccCactcctcgggagagaagtac	13	14	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	30596805	C	T	30596805	4	4	14	1	0	0	0	0	0	1	0	0	18260	595	21	4	1101	4	ZNF785	16	30596805	Nonsense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10		30596805	59757948	55	1044											
ARMC5	79798	bcgsc.ca	37	chr16	31476458	31476458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taactctagatgcagccccgCgcccaggatctgggctggtc	12	14	2	1	rs11150624	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	31476458	C	T	31476458	3	4	14	1	0	0	0	0	1	0	0	0	958	768	27	1	2128	1	ARMC5	16	31476458	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	879653	31476458	58878295	56	1045											
VPS53	55275	ucsc.edu	37	chr17	617869	617869	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcggaacgcttacctgctcGatggccagctgcacctcggg	14	14	0	0	rs11558129	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	617869	G	A	617869	2	1	14	1	0	0	0	0	0	0	0	1	17321	1048	37	1		1	VPS53	17	617869	Silent	SNP	G	TCGA-KL-8336-01A-11D-2310-10		617869	80577341	57	1046											
ZZEF1	23140	broad.mit.edu	37	chr17	4046184	4046184	+	Frame_Shift_Del	DEL	C	C	-													ctgctgtgactcggagcgttCcccatggggtctccgtcttg					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		-	4046184	C	-	4046184	7	5	14	1	0	1	0	1	0	0	0	0	18356	842	30	0	9099	0	ZZEF1	17	4046184	Frame_Shift_Del	DEL	C	TCGA-KL-8336-01A-11D-2310-10	3428315	4046184	77149026	58	1047											
TP53	7157	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7578455	7578455	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttgtagatggccatggCgcggacgcgggtgccgggcg	19	11	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	7578455	C	G	7578455	3	3	14	1	0	0	0	0	1	0	0	0	16486	768	27	5	823	5	TP53	17	7578455	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	3532271	7578455	73616755	59	1048											
GPR179	440435	ucsc.edu	37	chr17	36483472	36483472	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgggcacacgtcagcggCcctgcccccagtgctgacca	11	18	1	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	36483472	C	A	36483472	3	1	14	1	0	0	0	0	1	0	0	0	6731	739	26	5	1127	5	GPR179	17	36483472	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	28905017	36483472	44711738	60	1049											
NPTX1	4884	broad.mit.edu	37	chr17	78449421	78449421	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccctcctccagggtgttcAcccgggacagcacctgcctc	10	18	1	0	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	78449421	A	C	78449421	3	2	14	1	0	0	0	0	1	0	0	0	10681	159	6	5	772	5	NPTX1	17	78449421	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	41965949	78449421	2745789	61	1050											
ANKRD30B	374860	mdanderson.org	37	chr18	14779986	14779986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gttcccatcagaatccaaacGagaggaagatgaagaatatt	9	7	1	5	rs76927023		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	14779986	G	A	14779986	3	1	14	1	0	0	0	0	1	0	0	0	659	1058	37	1	1490	1	ANKRD30B	18	14779986	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10		14779986	63297262	62	1051											
DSC3	1825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr18	28611062	28611062	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctggctgtgtacactgaCccatcatttagaactctgaa	8	12	2	3	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	28611062	C	A	28611062	2	1	14	1	0	0	0	0	0	0	0	1	4804	494	18	5		5	DSC3	18	28611062	Silent	SNP	C	TCGA-KL-8336-01A-11D-2310-10	13831076	28611062	49466186	63	1052											
DAZAP1	26528	ucsc.edu	37	chr19	1432574	1432574	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctccgggggttcctccTccaccagccactcccggggc	11	21	0	0	rs201283349	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		C	1432574	T	C	1432574	2	2	14	1	0	0	0	0	0	0	0	1	4276	1538	54	2		2	DAZAP1	19	1432574	Silent	SNP	T	TCGA-KL-8336-01A-11D-2310-10		1432574	57696409	64	1053											
PLIN4	729359	mdanderson.org	37	chr19	4512156	4512156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgacattcactgcccccaCgagcccagtagtcactgtgt	10	15	2	0	rs112356938	byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	4512156	C	T	4512156	3	4	14	1	0	0	0	0	1	0	0	0	12172	536	19	1	2315	1	PLIN4	19	4512156	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	3079582	4512156	54616827	65	1054											
PNPLA6	10908	bcgsc.ca	37	chr19	7607524	7607524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgtccctgcaggaagagGcctccggggggtccctggca	16	14	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	7607524	G	T	7607524	3	4	14	1	0	0	0	0	1	0	0	0	12249	1203	42	5	1403	5	PNPLA6	19	7607524	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	3095368	7607524	51521459	66	1055											
S1PR5	53637	bcgsc.ca	37	chr19	10625364	10625364	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgcctccctcccgtgcgaaCcagagcgcgggggacagttt	13	15	0	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	10625364	C	T	10625364	4	4	14	1	0	0	0	0	0	1	0	0	13892	508	18	3	876	3	S1PR5	19	10625364	Nonsense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	3017840	10625364	48503619	67	1056											
ZNF799	90576	mdanderson.org	37	chr19	12501852	12501852	+	Missense_Mutation	SNP	C	C	T													gaaatcaataaaggctttccCacatttgcatttatagggtt					rs200077318		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	12501852	C	T	12501852	3	4	14	1	0	0	0	0	1	0	0	0	18269	594	21	4	575	4	ZNF799	19	12501852	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	1876488	12501852	46627131	68	1057	31	2									
ZNF799	90576	mdanderson.org	37	chr19	12501855	12501855	+	Missense_Mutation	SNP	A	A	G													atcaataaaggctttcccacAtttgcatttatagggtttct					rs201077492		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		G	12501855	A	G	12501855	3	3	14	1	0	0	0	0	1	0	0	0	18269	217	8	4	578	4	ZNF799	19	12501855	Missense_Mutation	SNP	A	TCGA-KL-8336-01A-11D-2310-10	3	12501855	46627128	69	1058	31	2									
FFAR3	2865	mdanderson.org	37	chr19	35850829	35850829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtggcctgtgctgaaaGctaggtcctccgggggagga	17	10	0	1	rs381478	bycluster;byfrequency	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		A	35850829	G	A	35850829	3	1	14	1	0	0	0	0	1	0	0	0	5878	971	34	4	1039	4	FFAR3	19	35850829	Missense_Mutation	SNP	G	TCGA-KL-8336-01A-11D-2310-10	23348974	35850829	23278154	70	1059											
ZNF836	162962	mdanderson.org;bcgsc.ca	37	chr19	52660631	52660631	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttatttcaccatctttcCattgaaactcaaggtcctgt	4	10	3	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	52660631	C	T	52660631	4	4	14	1	0	0	0	0	0	1	0	0	18290	595	21	4	2507	4	ZNF836	19	52660631	Nonsense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	16809802	52660631	6468352	71	1060											
PANX2	56666	broad.mit.edu	37	chr22	50616699	50616699	+	Frame_Shift_Del	DEL	T	T	-													tctccctggacgtgcaccccTacatcctcggcaccaagaag					novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		-	50616699	T	-	50616699	7	5	14	1	0	1	0	1	0	0	0	0	11500	1522	53	0	1564	0	PANX2	22	50616699	Frame_Shift_Del	DEL	T	TCGA-KL-8336-01A-11D-2310-10		50616699	687867	72	1061											
ARSE	415	hgsc.bcm.edu	37	chrX	2867365	2867365	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttgagaaaggacgcaacCtcctgcagaataaggggtgt	12	8	0	2	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	2867365	C	T	2867365	2	4	14	1	0	0	0	0	0	0	0	1	994	680	24	4		4	ARSE	23	2867365	Silent	SNP	C	TCGA-KL-8336-01A-11D-2310-10		2867365	152403195	73	1062											
DCAF8L2	347442	hgsc.bcm.edu	37	chrX	27765387	27765407	+	In_Frame_Del	DEL	GGAGGAGGAGGAAGAGGAGGA	GGAGGAGGAGGAAGAGGAGGA	-													gagatacaagaggagggaggGgaggaggaggaagaggagga					rs34350719	alternate_allele	TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	GGAGGAGGAGGAAGAGGAGGA	GGAGGAGGAGGAAGAGGAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		-	27765407	GGAGGAGGAGGAAGAGGAGGA	-	27765387	7	5	14	1	0	1	0	1	0	0	0	0	4310	1219	43	0	377	0	DCAF8L2	23	27765387	In_Frame_Del	DEL	GGAGGAGGAGGAAGAGGAGGA	TCGA-KL-8336-01A-11D-2310-10	24898022	27765387	127505173	74	1063											
CXorf66	347487	broad.mit.edu	37	chrX	139038180	139038180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgtcattcacatgatcacCgtatgcattgttcctggaat	7	10	3	1	novel		TCGA-KL-8336-01A-11D-2310-10	TCGA-KL-8336-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e3918e04-066f-49f7-9abd-22d7b896c2a5	cebdaef5-4d74-4bf2-88a3-0be1bd198029		T	139038180	C	T	139038180	3	4	14	1	0	0	0	0	1	0	0	0	4149	652	23	1	128	1	CXorf66	23	139038180	Missense_Mutation	SNP	C	TCGA-KL-8336-01A-11D-2310-10	111272793	139038180	16232380	75	1064											
MXRA8	54587	hgsc.bcm.edu;mdanderson.org	37	chr1	1290408	1290408	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtgcaccacctgttgAgcctcctccacgtgccggtc	9	18	0	1	rs147996767	by1000genomes	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	1290408	A	G	1290408	2	3	15	1	0	0	0	0	0	0	0	1	10083	291	11	2		2	MXRA8	1	1290408	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10		1290408	247960213	1	1065											
NT5C1A	84618	broad.mit.edu	37	chr1	40124870	40124870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accataaggcacatgggcggCcacagtgcccatctcctgag	11	14	1	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	40124870	C	A	40124870	3	1	15	1	0	0	0	0	1	0	0	0	10764	739	26	5	80	5	NT5C1A	1	40124870	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	38834462	40124870	209125751	2	1066											
LPPR5	0	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	99418744	99418744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccccactgatgaattgtGtatactgctgacatccaagt	7	11	0	3	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	99418744	G	A	99418744	3	1	15	1	0	0	0	0	1	0	0	0	9000	1377	48	4	478	4	LPPR5	1	99418744	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	59293874	99418744	149831877	3	1067											
DCST2	127579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	155002604	155002604	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagcactgagcggtagcActgtgggcagccctgccgtg	16	12	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	155002604	A	G	155002604	3	3	15	1	0	0	0	0	1	0	0	0	4335	159	6	2	1224	2	DCST2	1	155002604	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	55583860	155002604	94248017	4	1068											
SH2D2A	9047	broad.mit.edu	37	chr1	156777068	156777069	+	Frame_Shift_Ins	INS	-	-	T													tgtctccaggcgggtgggggINSctggtggggcaggggagggc					novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	156777069	-	T	156777068	7	5	15	1	0	1	1	0	0	0	0	0	14329	1203	42	0	101	0	SH2D2A	1	156777068	Frame_Shift_Ins	INS	-	TCGA-KL-8337-01A-11D-2310-10	1774464	156777068	92473553	5	1069											
SPTA1	6708	ucsc.edu;bcgsc.ca	37	chr1	158641982	158641982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagttgttgtcaagtattTccatctttggaaagaaggag	10	6	2	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	158641982	T	C	158641982	3	2	15	1	0	0	0	0	1	0	0	0	15216	1783	62	4	6072	4	SPTA1	1	158641982	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	1864914	158641982	90608639	6	1070											
ADAMTS4	9507	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	161161010	161161010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagtcctggggagtggggCgtggcgttgaaggggtcggc	22	8	0	1	rs148170603		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	161161010	C	T	161161010	3	4	15	1	0	0	0	0	1	0	0	0	268	768	27	1	85	1	ADAMTS4	1	161161010	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	2519028	161161010	88089611	7	1071											
RGS16	6004	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	182572462	182572462	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagatccccagacgtgtcttGaactctttggctctgaaaaa	8	10	3	4	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	182572462	G	T	182572462	3	4	15	1	0	0	0	0	1	0	0	0	13391	1281	45	5	567	5	RGS16	1	182572462	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	21411452	182572462	66678159	8	1072											
OR6F1	343169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	247875280	247875280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctttgatagaggtgcggaCgtgaaggaaaactgtggacc	14	6	1	3	rs145498993		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	247875280	C	T	247875280	3	4	15	1	0	0	0	0	1	0	0	0	11280	536	19	1	152	1	OR6F1	1	247875280	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	65302818	247875280	1375341	9	1073											
USP34	9736	broad.mit.edu	37	chr2	61415632	61415632	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaagatggaacttccattcGgtattctttaacagaactat	7	8	1	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	61415632	G	T	61415632	2	4	15	1	0	0	0	0	0	0	0	1	17171	1124	39	5		5	USP34	2	61415632	Silent	SNP	G	TCGA-KL-8337-01A-11D-2310-10		61415632	181783741	10	1074											
C2orf78	388960	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	74043649	74043649	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctcaatcgaatgcagtcaatCcatcccgaccagctcctacc	5	17	2	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	74043649	C	A	74043649	3	1	15	1	0	0	0	0	1	0	0	0	2215	855	30	5	2309	5	C2orf78	2	74043649	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	12628017	74043649	169155724	11	1075											
DAZL	1618	broad.mit.edu;mdanderson.org	37	chr3	16633629	16633629	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaacagacaagataccacCgtttgtatgcttcggtccac	7	11	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	16633629	C	T	16633629	2	4	15	1	0	0	0	0	0	0	0	1	4278	639	23	1		1	DAZL	3	16633629	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10		16633629	181388801	12	1076											
SETD2	29072	broad.mit.edu	37	chr3	47162042	47162042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcactgaccccttgtcttTctgaagggatagaagaaatt	9	8	2	4	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	47162042	T	C	47162042	3	2	15	1	0	0	0	0	1	0	0	0	14228	1792	62	4	3686	4	SETD2	3	47162042	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	30528413	47162042	150860388	13	1077											
TMEM108	66000	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	133099424	133099424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcccaggggggtggttctaCcttcaccagccaaggaggga	15	11	2	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	133099424	C	A	133099424	3	1	15	1	0	0	0	0	1	0	0	0	16128	507	18	5	875	5	TMEM108	3	133099424	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	85937382	133099424	64923006	14	1078											
FAM43A	131583	broad.mit.edu	37	chr3	194407863	194407863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggagcaagagcgaggcggGccgtcagggcaccaagatga	17	10	1	3	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	194407863	G	T	194407863	3	4	15	1	0	0	0	0	1	0	0	0	5611	1203	42	5	310	5	FAM43A	3	194407863	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	61308439	194407863	3614567	15	1079											
MUC4	4585	mdanderson.org	37	chr3	195507093	195507093	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggggtggtgtcacctgtGgatgctgaggaagcgtcggt	19	6	1	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	195507093	G	A	195507093	2	1	15	1	0	0	0	0	0	0	0	1	10056	1335	47	4		4	MUC4	3	195507093	Silent	SNP	G	TCGA-KL-8337-01A-11D-2310-10	1099230	195507093	2515337	16	1080											
SRD5A3	79644	broad.mit.edu	37	chr4	56212670	56212671	+	Frame_Shift_Ins	INS	-	-	G													atccgctatgggaaaaccaaINSgtgtggggagccgtcgcgcc					novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	56212671	-	G	56212670	7	5	15	1	0	1	1	0	0	0	0	0	15240	72	3	0	169	0	SRD5A3	4	56212670	Frame_Shift_Ins	INS	-	TCGA-KL-8337-01A-11D-2310-10		56212670	134941606	17	1081											
AREG	374	broad.mit.edu;mdanderson.org	37	chr4	75314901	75314901	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatccatgtaatgcagaaTttcaaaatttctgcattcac	4	8	3	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	75314901	T	G	75314901	3	3	15	1	0	0	0	0	1	0	0	0	845	1493	52	5	458	5	AREG	4	75314901	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	19102231	75314901	115839375	18	1082											
FRG1	2483	mdanderson.org	37	chr4	190873347	190873347	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacagtaacaaactttggtgAaatttcaggaaccatagcca	8	8	1	1	rs73024948		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	190873347	A	G	190873347	3	3	15	1	0	0	0	0	1	0	0	0	6098	246	9	4	174	4	FRG1	4	190873347	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	115558446	190873347	280929	19	1083											
HTR4	3360	ucsc.edu	37	chr5	147929716	147929716	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgagctgcctgtcccAgcacacagccaccatcacca	6	19	2	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	147929716	A	G	147929716	3	3	15	1	0	0	0	0	1	0	0	0	7510	188	7	2	1346	2	HTR4	5	147929716	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		147929716	32985544	20	1084											
HLA-DRB1	3123	bcgsc.ca	37	chr6	32551958	32551958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtccaccgcggcccgcgCctgctccaggatgtccttct	12	17	1	0	rs1064592	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	32551958	C	T	32551958	3	4	15	1	0	0	0	0	1	0	0	0	7266	739	26	3	522	3	HLA-DRB1	6	32551958	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10		32551958	138563109	21	1085											
TBCC	6903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	42713337	42713337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgctttcaactgccggggGgatgccaggagccgcgtcta	14	11	2	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	42713337	G	A	42713337	3	1	15	1	0	0	0	0	1	0	0	0	15735	1232	43	3	569	3	TBCC	6	42713337	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	10161379	42713337	128401730	22	1086											
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	42946490	C	A	42946490	2	1	15	1	0	0	0	0	0	0	0	1	11830	697	25	5		5	PEX6	6	42946490	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	233153	42946490	128168577	23	1087											
PERP	64065	ucsc.edu	37	chr6	138428444	138428444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaggggcaggatccagcGgcagcgctcgcaggccaggc	18	13	0	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	138428444	G	A	138428444	3	1	15	1	0	0	0	0	1	0	0	0	11811	1116	39	1	559	1	PERP	6	138428444	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	95481954	138428444	32686623	24	1088											
C1GALT1	56913	broad.mit.edu	37	chr7	7278070	7278070	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccctgctgtgggactgaaAaccaaagaaggcagagatca	11	9	1	3	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	7278070	A	G	7278070	2	3	15	1	0	0	0	0	0	0	0	1	1971	11	1	4		4	C1GALT1	7	7278070	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10		7278070	151860593	25	1089											
TMEM196	256130	broad.mit.edu	37	chr7	19769017	19769017	+	Frame_Shift_Del	DEL	T	T	-													acacttacgacaagtcctgaTttttttttggcacacaatat					novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		-	19769017	T	-	19769017	7	5	15	1	0	1	0	1	0	0	0	0	16222	1490	52	0	338	0	TMEM196	7	19769017	Frame_Shift_Del	DEL	T	TCGA-KL-8337-01A-11D-2310-10	12490947	19769017	139369646	26	1090											
DNAJB9	4189	broad.mit.edu	37	chr7	108212318	108212318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaggcctttcacaagttgGccatgaagtaccaccctgac	9	12	1	3	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	108212318	G	T	108212318	3	4	15	1	0	0	0	0	1	0	0	0	4664	1203	42	5	150	5	DNAJB9	7	108212318	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	88443301	108212318	50926345	27	1091											
AASS	10157	broad.mit.edu	37	chr7	121755170	121755170	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccacaccagcaggtgagAacttgcccggagccaggaga	12	13	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	121755170	A	G	121755170	3	3	15	1	0	0	0	0	1	0	0	0	24	246	9	4	1843	4	AASS	7	121755170	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	13542852	121755170	37383493	28	1092											
DENND2A	27147	ucsc.edu	37	chr7	140301430	140301430	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaagggctttgtgggggaAccctccgagcccctatacac	12	12	0	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	140301430	A	C	140301430	2	2	15	1	0	0	0	0	0	0	0	1	4466	30	2	5		5	DENND2A	7	140301430	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10	18546260	140301430	18837233	29	1093											
PCMTD1	115294	bcgsc.ca	37	chr8	52733191	52733191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctttgaggaatccccttgGcctgcatctcatcatttatg	7	13	2	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	52733191	G	A	52733191	3	1	15	1	0	0	0	0	1	0	0	0	11665	1203	42	3	283	3	PCMTD1	8	52733191	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10		52733191	93630831	30	1094											
PDE7A	5150	ucsc.edu	37	chr8	66753704	66753704	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtgctgggggaccggccTgtccaggggcagtaccggca	18	12	0	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	66753704	T	C	66753704	3	2	15	1	0	0	0	0	1	0	0	0	11730	1579	55	2	1556	2	PDE7A	8	66753704	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	14020513	66753704	79610318	31	1095											
TTLL11	158135	hgsc.bcm.edu;ucsc.edu	37	chr9	124751435	124751435	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agagccctcttgaggccggtCaaggctggaaacgcaggctg	15	11	2	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	124751435	C	T	124751435	2	4	15	1	0	0	0	0	0	0	0	1	16830	825	29	4		4	TTLL11	9	124751435	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10		124751435	16461996	32	1096											
DDX31	64794	mdanderson.org	37	chr9	135545386	135545386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agactgctgggcccgggaccCcacgtgggacgcgcgaggac	17	14	0	1	rs75901862	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	135545386	C	T	135545386	3	4	15	1	0	0	0	0	1	0	0	0	4388	623	22	3	2391	3	DDX31	9	135545386	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	10793951	135545386	5668045	33	1097											
C9orf172	389813	mdanderson.org	37	chr9	139739643	139739643	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgcgacgggcccctgccTgggccccgggactacgccga	14	17	0	0	rs10870132	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	139739643	T	C	139739643	2	2	15	1	0	0	0	0	0	0	0	1	2496	1567	55	2		2	C9orf172	9	139739643	Silent	SNP	T	TCGA-KL-8337-01A-11D-2310-10	4194257	139739643	1473788	34	1098											
SLC25A28	81894	hgsc.bcm.edu	37	chr10	101373519	101373519	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttttttaacttttcgtAgcaggcaaaataaagggcgt	9	6	1	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	101373519	A	G	101373519	3	3	15	1	0	0	0	0	1	0	0	0	14589	420	15	2	652	2	SLC25A28	10	101373519	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		101373519	34161228	35	1099											
CALHM2	51063	bcgsc.ca	37	chr10	105209398	105209398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatggagcttagaaggaGgaaggtgggggcggcggagc	22	5	0	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	105209398	G	A	105209398	3	1	15	1	0	0	0	0	1	0	0	0	2608	1000	35	4	678	4	CALHM2	10	105209398	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	3835879	105209398	30325349	36	1100											
MUC2	4583	broad.mit.edu;mdanderson.org	37	chr11	1092631	1092631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagccctccaaccaccactCccagccctccaacaaccacc	2	25	0	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	1092631	C	T	1092631	3	4	15	1	0	0	0	0	1	0	0	0	10053	855	30	3	4568	3	MUC2	11	1092631	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10		1092631	133913885	37	1101											
KRTAP5-5	439915	mdanderson.org	37	chr11	1651645	1651645	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccagctgctgtaagccctActgctgccagtccagctgct	10	15	0	0	rs77039648		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	1651645	A	G	1651645	3	3	15	1	0	0	0	0	1	0	0	0	8626	391	14	2	577	2	KRTAP5-5	11	1651645	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	559014	1651645	133354871	38	1102											
INS-IGF2	723961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	2168965	2168965	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggggctgagctggcagCgattcagagccctggggctg	19	10	1	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	2168965	C	T	2168965	2	4	15	1	0	0	0	0	0	0	0	1	7824	755	27	1		1	INS-IGF2	11	2168965	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	517320	2168965	132837551	39	1103											
CCDC73	493860	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	32635093	32635093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acaaagaaatgcaaggggtcGaactgctcgctgtttgactt	11	8	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	32635093	G	A	32635093	3	1	15	1	0	0	0	0	1	0	0	0	2873	1059	37	1	480	1	CCDC73	11	32635093	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	30466128	32635093	102371423	40	1104											
GAL3ST3	89792	ucsc.edu	37	chr11	65810618	65810618	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgccaggtaggcggcgtcgTcgcgcgggctgcgctcattg	17	14	1	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	65810618	T	C	65810618	3	2	15	1	0	0	0	0	1	0	0	0	6253	1667	58	2	643	2	GAL3ST3	11	65810618	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	33175525	65810618	69195898	41	1105											
MAML2	84441	mdanderson.org	37	chr11	95825362	95825362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgttgctgttgctgCtgctgctgctgttgctgctg	14	9	0	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	95825362	C	T	95825362	2	4	15	1	0	0	0	0	0	0	0	1	9283	796	28	4		4	MAML2	11	95825362	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	30014744	95825362	39181154	42	1106											
PRB2	653247	mdanderson.org	37	chr12	11546495	11546495	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcctggaggagatcgagAacttcgggacttgttgtctc	12	9	1	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	11546495	A	C	11546495	3	2	15	1	0	0	0	0	1	0	0	0	12532	246	9	5	737	5	PRB2	12	11546495	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		11546495	122305400	43	1107											
KRT86	3892	mdanderson.org	37	chr12	52699044	52699044	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagatccgcgttctccagtcCcacatctcagacacctccgt	7	17	2	2	rs61915660	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	52699044	C	G	52699044	2	3	15	1	0	0	0	0	0	0	0	1	8561	610	22	5		5	KRT86	12	52699044	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10	41152549	52699044	81152851	44	1108											
STRN3	29966	broad.mit.edu	37	chr14	31420078	31420078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taattactcactgtcttaaaAgctgtctgccttgcttccac	5	12	3	0	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	31420078	A	G	31420078	3	3	15	1	0	0	0	0	1	0	0	0	15430	72	3	2	1920	2	STRN3	14	31420078	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10		31420078	75929462	45	1109											
AHNAK2	113146	mdanderson.org	37	chr14	105411784	105411784	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtcggcctccgccttcggcGcagacacatccaccgaggcc	11	19	0	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	105411784	G	T	105411784	3	4	15	1	0	0	0	0	1	0	0	0	415	1087	38	5	7387	5	AHNAK2	14	105411784	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	73991706	105411784	1937756	46	1110											
SPESP1	246777	broad.mit.edu	37	chr15	69238206	69238206	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttcacaccggaaataggAaagaaaaaacacacggaaag	10	8	1	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	69238206	A	G	69238206	2	3	15	1	0	0	0	0	0	0	0	1	15140	233	9	4		4	SPESP1	15	69238206	Silent	SNP	A	TCGA-KL-8337-01A-11D-2310-10		69238206	33293186	47	1111											
SRRM2	23524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	2813651	2813651	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tctctgtgcaggagtaaaatCtagcacaccaccaggcgaga	10	11	2	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	2813651	C	A	2813651	3	1	15	1	0	0	0	0	1	0	0	0	15269	913	32	5	3160	5	SRRM2	16	2813651	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10		2813651	87541102	48	1112											
CORO1A	11151	ucsc.edu	37	chr16	30198795	30198795	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgggcttcagccgcatgagTgagcggcaggtggcgctgtg	18	10	1	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	30198795	T	C	30198795	2	2	15	1	0	0	0	0	0	0	0	1	3782	1693	59	2		2	CORO1A	16	30198795	Silent	SNP	T	TCGA-KL-8337-01A-11D-2310-10	27385144	30198795	60155958	49	1113											
CLEC18A	348174	mdanderson.org	37	chr16	69988292	69988292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcagccctctgtggaaCcccaaccccgagcctggcgt	12	17	1	0	rs2549089		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	69988292	C	T	69988292	3	4	15	1	0	0	0	0	1	0	0	0	3531	507	18	3	282	3	CLEC18A	16	69988292	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	39789497	69988292	20366461	50	1114											
HPR	3250	mdanderson.org	37	chr16	72108254	72108254	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttcgctaccagtgtaagAactactacagactgcgcaca	8	11	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	72108254	A	G	72108254	3	3	15	1	0	0	0	0	1	0	0	0	7395	246	9	4	173	4	HPR	16	72108254	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	2119962	72108254	18246499	51	1115											
ATMIN	23300	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	81077627	81077627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggatgaccatgtacagatGgaccaagctggaatgtgcgg	14	8	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	81077627	G	A	81077627	3	1	15	1	0	0	0	0	1	0	0	0	1114	1348	47	4	1538	4	ATMIN	16	81077627	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	8969373	81077627	9277126	52	1116											
C17orf74	201243	broad.mit.edu	37	chr17	7329926	7329926	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgtcgcggctggggcgggTtttatcagagagcgggcctg	18	10	1	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	7329926	T	G	7329926	3	3	15	1	0	0	0	0	1	0	0	0	1895	1725	60	5	626	5	C17orf74	17	7329926	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10		7329926	73865284	53	1117											
TP53	7157	broad.mit.edu	37	chr17	7577559	7577559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggttcatgccgcccatgcagGaactgttacacatgtagttg	11	10	1	0	rs28934573	bycluster	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	7577559	G	A	7577559	3	1	15	1	0	0	0	0	1	0	0	0	16486	1174	41	3	568	3	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	247633	7577559	73617651	54	1118											
TP53	7157	bcgsc.ca	37	chr17	7578370	7578370	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctccagccccagctgctcaCcatcgctatctgagcagcgc	8	18	3	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	7578370	C	A	7578370	5	1	15	1	0	0	0	0	0	0	1	0	16486	521	18	5	738	5	TP53	17	7578370	Splice_Site	SNP	C	TCGA-KL-8337-01A-11D-2310-10	811	7578370	73616840	55	1119											
DGKE	8526	ucsc.edu	37	chr17	54935999	54935999	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagattgtttagtgcaagaAtgtaaagatttgaataaaaa	8	1	0	4	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	54935999	A	T	54935999	3	4	15	1	0	0	0	0	1	0	0	0	4505	98	4	5	1287	5	DGKE	17	54935999	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	47357629	54935999	26259211	56	1120											
BPTF	2186	bcgsc.ca	37	chr17	65907097	65907097	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatgtaaattgtcaggagAgttctcaagtagatgtggtc	11	6	2	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	65907097	A	G	65907097	3	3	15	1	0	0	0	0	1	0	0	0	1503	304	11	2	3525	2	BPTF	17	65907097	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	10971098	65907097	15288113	57	1121											
CTDP1	9150	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr18	77513733	77513733	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgaggatgagggcagcagCtccgaggccgacgagatggc	17	10	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	77513733	C	T	77513733	2	4	15	1	0	0	0	0	0	0	0	1	4033	796	28	4		4	CTDP1	18	77513733	Silent	SNP	C	TCGA-KL-8337-01A-11D-2310-10		77513733	563515	58	1122											
GPR108	56927	mdanderson.org	37	chr19	6737481	6737481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcaccgtcagcgccagcTggtggatgcgcccggagcag	15	15	2	0	rs340138	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	6737481	T	C	6737481	3	2	15	1	0	0	0	0	1	0	0	0	6681	1580	55	2	1596	2	GPR108	19	6737481	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10		6737481	52391502	59	1123											
TMEM205	374882	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	11453585	11453585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggacagcccatggtagCggaagaaattctggcggaga	16	7	1	3	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	11453585	C	T	11453585	3	4	15	1	0	0	0	0	1	0	0	0	16234	768	27	1	97	1	TMEM205	19	11453585	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	4716104	11453585	47675398	60	1124											
INSL3	3640	ucsc.edu	37	chr19	17932190	17932190	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcccccgcacacgcgcacTagcgcgcgtacgaagtggtg	15	15	0	0	rs1047233	byfrequency	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	17932190	T	C	17932190	2	2	15	1	0	0	0	0	0	0	0	1	7828	1509	53	2		2	INSL3	19	17932190	Silent	SNP	T	TCGA-KL-8337-01A-11D-2310-10	6478605	17932190	41196793	61	1125											
ZNF98	148198	broad.mit.edu	37	chr19	22575373	22575373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtagaaaggtttgaggCctcattataggctttcccac	10	8	1	2	rs684900	bycluster	TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	22575373	C	T	22575373	3	4	15	1	0	0	0	0	1	0	0	0	18306	739	26	3	1058	3	ZNF98	19	22575373	Missense_Mutation	SNP	C	TCGA-KL-8337-01A-11D-2310-10	4643183	22575373	36553610	62	1126											
ZNF254	9534	ucsc.edu	37	chr19	24310753	24310753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcaccacagataagataActcattggagagaaatctta	6	9	3	3	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	24310753	A	G	24310753	3	3	15	1	0	0	0	0	1	0	0	0	17903	43	2	2	1965	2	ZNF254	19	24310753	Missense_Mutation	SNP	A	TCGA-KL-8337-01A-11D-2310-10	1735380	24310753	34818230	63	1127											
EML2	24139	broad.mit.edu	37	chr19	46124887	46124887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaccgcctgtgtgatacGgttcccacctgcagggtggc	13	14	0	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		A	46124887	G	A	46124887	3	1	15	1	0	0	0	0	1	0	0	0	5136	1116	39	1	1139	1	EML2	19	46124887	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10	21814134	46124887	13004096	64	1128											
NLRP11	204801	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	56321650	56321650	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attttccaaaagtgtgacttTcccattgcagcatgaatttt	6	8	0	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	56321650	T	G	56321650	3	3	15	1	0	0	0	0	1	0	0	0	10552	1783	62	5	2807	5	NLRP11	19	56321650	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	10196763	56321650	2807333	65	1129											
VSX1	30813	mdanderson.org	37	chr20	25062342	25062342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcgctgcgcttctggcGgccgagcgcaggcggcggac	18	14	1	0	rs6050307		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		T	25062342	G	T	25062342	3	4	15	1	0	0	0	0	1	0	0	0	17337	1116	39	5	819	5	VSX1	20	25062342	Missense_Mutation	SNP	G	TCGA-KL-8337-01A-11D-2310-10		25062342	37963178	66	1130											
COL9A3	1299	broad.mit.edu	37	chr20	61450635	61450636	+	Frame_Shift_Ins	INS	-	-	G													gctgggctgccgggactgccINSgggtgtggatgtgagtgcgc					novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		G	61450636	-	G	61450635	7	5	15	1	0	1	1	0	0	0	0	0	3738	652	23	0	259	0	COL9A3	20	61450635	Frame_Shift_Ins	INS	-	TCGA-KL-8337-01A-11D-2310-10	36388293	61450635	1574885	67	1131											
PPM1F	9647	ucsc.edu	37	chr22	22287827	22287827	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcttctctgagggctcccTcagggtctgtgggcagctct	14	12	4	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	22287827	T	C	22287827	3	2	15	1	0	0	0	0	1	0	0	0	12424	1551	54	2	697	2	PPM1F	22	22287827	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10		22287827	29016739	68	1132											
APOBEC3D	140564	broad.mit.edu	37	chr22	39421307	39421307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agattggcggtgggtgctccTcaggctgcataaggcagggg	18	8	1	1	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	39421307	T	C	39421307	3	2	15	1	0	0	0	0	1	0	0	0	794	1551	54	2	453	2	APOBEC3D	22	39421307	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	17133480	39421307	11883259	69	1133											
PRR5-ARHGAP8	553158	ucsc.edu	37	chr22	45204237	45204237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaacgattataccatcgTctatttccactacgggctga	8	10	1	2	novel		TCGA-KL-8337-01A-11D-2310-10	TCGA-KL-8337-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3fd2ee0-3dd0-4992-9a9f-75e487b43441	48a0412d-0d33-43a8-9079-ccd5b28bef22		C	45204237	T	C	45204237	3	2	15	1	0	0	0	0	1	0	0	0	12690	1667	58	2	610	2	PRR5-ARHGAP8	22	45204237	Missense_Mutation	SNP	T	TCGA-KL-8337-01A-11D-2310-10	5782930	45204237	6100329	70	1134											
ATAD3B	83858	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	1425803	1425803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccggccacagaaggaaaaCggtgagtgtcccgcctcacc	12	14	1	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	1425803	C	T	1425803	3	4	16	1	0	0	0	0	1	0	0	0	1078	550	19	1	1558	1	ATAD3B	1	1425803	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		1425803	247824818	1	1135											
ZBTB40	9923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	22839532	22839532	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccaccttcgccttcacacCggggaccgcccgttcatgtg	9	17	2	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	22839532	C	T	22839532	2	4	16	1	0	0	0	0	0	0	0	1	17647	639	23	1		1	ZBTB40	1	22839532	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10	21413729	22839532	226411089	2	1136											
LEPR	3953	bcgsc.ca	37	chr1	66058516	66058516	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtggagtaattttccagtCacctctaatgtcagttcagc	9	9	4	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	66058516	C	T	66058516	3	4	16	1	0	0	0	0	1	0	0	0	8790	838	29	4	685	4	LEPR	1	66058516	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	43218984	66058516	183192105	3	1137											
RPAP2	79871	bcgsc.ca	37	chr1	92799023	92799023	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcgtacttgaaaagttgAgtaaagtgtaagtatgtaat	10	3	0	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	92799023	A	G	92799023	3	3	16	1	0	0	0	0	1	0	0	0	13637	304	11	2	1565	2	RPAP2	1	92799023	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	26740507	92799023	156451598	4	1138											
TCHH	7062	bcgsc.ca	37	chr1	152084677	152084677	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcctcctgctcgcgcctcAgctgctgctcgcgcctctcc	8	21	3	0	rs199649490		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	152084677	A	T	152084677	3	4	16	1	0	0	0	0	1	0	0	0	15804	188	7	5	4819	5	TCHH	1	152084677	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	59285654	152084677	97165944	5	1139											
PIK3C2B	5287	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	204415184	204415184	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccactcccagctgggggCgctggcgagcaccaggggga	17	14	0	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	204415184	C	T	204415184	3	4	16	1	0	0	0	0	1	0	0	0	11990	768	27	1	2398	1	PIK3C2B	1	204415184	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	52330507	204415184	44835437	6	1140											
OR13G1	441933	mdanderson.org;bcgsc.ca	37	chr1	247835950	247835950	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacatatggtggttcataaTagtactgtaatgaagaggga	11	4	1	2	rs1151640	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		C	247835950	T	C	247835950	3	2	16	1	0	0	0	0	1	0	0	0	11021	1406	49	4	533	4	OR13G1	1	247835950	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	43420766	247835950	1414671	7	1141											
GREB1	9687	ucsc.edu	37	chr2	11775503	11775503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcagatcgtggtgggcgGccacaggtccttccacatca	13	12	1	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	11775503	G	T	11775503	3	4	16	1	0	0	0	0	1	0	0	0	6818	1203	42	5	5540	5	GREB1	2	11775503	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10		11775503	231423870	8	1142											
OTOF	9381	bcgsc.ca	37	chr2	26698856	26698856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgctgctgtcggcggcaaAgaggctgcgggcctggtaca	16	12	0	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	26698856	A	G	26698856	3	3	16	1	0	0	0	0	1	0	0	0	11382	72	3	2	3353	2	OTOF	2	26698856	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	14923353	26698856	216500517	9	1143											
RNF103	7844	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	86831681	86831681	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accattctaagttattggcaTtgacttcatcattgttgttg	7	7	3	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	86831681	T	A	86831681	3	1	16	1	0	0	0	0	1	0	0	0	13518	1493	52	5	718	5	RNF103	2	86831681	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	60132825	86831681	156367692	10	1144											
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	chr2	209198216	209198216	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accagatggtggcgtctttcAggtaagaaatcctaggaatc	11	8	2	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	209198216	A	G	209198216	3	3	16	1	0	0	0	0	1	0	0	0	12004	202	7	2	4242	2	PIKFYVE	2	209198216	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10	122366535	209198216	34001157	11	1145											
PECR	55825	bcgsc.ca	37	chr2	216923679	216923679	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gacgatagatcctccatgctCtttcatccaggagctgtaaa	8	11	2	1	rs1429148	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	216923679	C	T	216923679	3	4	16	1	0	0	0	0	1	0	0	0	11796	922	32	4	486	4	PECR	2	216923679	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	7725463	216923679	26275694	12	1146											
MAGI1	9223	hgsc.bcm.edu	37	chr3	65425594	65425594	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgttgCtgctgctgttgctgctgctg	14	11	0	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	65425594	C	T	65425594	2	4	16	1	0	0	0	0	0	0	0	1	9267	796	28	4		4	MAGI1	3	65425594	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10		65425594	132596836	13	1147											
RABL3	285282	broad.mit.edu	37	chr3	120417415	120417415	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaactgttcttgatcaTaatccctgtgataaataata	5	8	2	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		C	120417415	T	C	120417415	3	2	16	1	0	0	0	0	1	0	0	0	13064	1406	49	4	337	4	RABL3	3	120417415	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	54991821	120417415	77605015	14	1148											
DHX36	170506	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	154033067	154033067	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtagaaacttcagtaccgTatctgttttgacaaaataag	7	6	2	2	rs138481688	alternate_allele	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	154033067	T	A	154033067	3	1	16	1	0	0	0	0	1	0	0	0	4546	1638	57	5	2747	5	DHX36	3	154033067	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	33615652	154033067	43989363	15	1149											
NDUFB5	4711	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	179336311	179336311	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaaggctgaattacggTaggaaaaacgagggggtagg	16	4	0	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		C	179336311	T	C	179336311	5	2	16	1	0	0	0	0	0	0	1	0	10363	1652	57	2	469	2	NDUFB5	3	179336311	Splice_Site	SNP	T	TCGA-KL-8338-01A-11D-2310-10	25303244	179336311	18686119	16	1150											
MUC4	4585	broad.mit.edu;mdanderson.org	37	chr3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggcgtgacctgtggatgctGaggaagtgtcggtgacagga	18	6	0	3	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	195509308	G	A	195509308	3	1	16	1	0	0	0	0	1	0	0	0	10056	1294	45	4		4	MUC4	3	195509308	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	16172997	195509308	2513122	17	1151			1	12		3	3	2027	N	T_G_C	5.55518e-06
MUC4	4585	mdanderson.org	37	chr3	195510758	195510758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggatgctgcggaagtgtCggtgacaggaagagaggtgg	20	4	0	2	rs200554304	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	195510758	C	T	195510758	3	4	16	1	0	0	0	0	1	0	0	0	10056	884	31	1		1	MUC4	3	195510758	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	1450	195510758	2511672	18	1152			1	12		3	3	2027	N	T_G_C	5.55518e-06
MUC4	4585	bcgsc.ca	37	chr3	195511334	195511334	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggatgctgaggaagagcTggtgacaggaagaggggtgg	21	3	0	5	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		C	195511334	T	C	195511334	3	2	16	1	0	0	0	0	1	0	0	0	10056	1580	55	2		2	MUC4	3	195511334	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	576	195511334	2511096	19	1153			1	12		3	3	2027	N	T_G_C	5.55518e-06
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	73959889	73959889	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaatagcattgatattacagCctcctcttccaatcactctg	5	12	3	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	73959889	C	A	73959889	3	1	16	1	0	0	0	0	1	0	0	0	646	739	26	5	2605	5	ANKRD17	4	73959889	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		73959889	117194387	20	1154											
CXCL5	6374	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	74863781	74863781	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaaaggggcttctggatcaaGacaaatttccttcccgttct	8	10	3	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	74863781	G	T	74863781	3	4	16	1	0	0	0	0	1	0	0	0	4118	942	33	5	78	5	CXCL5	4	74863781	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	903892	74863781	116290495	21	1155											
MIER3	166968	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	56229122	56229122	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagaaatcctatccattatTttttcactgccagtccttaa	4	11	1	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	56229122	T	G	56229122	3	3	16	1	0	0	0	0	1	0	0	0	9659	1838	64	5	974	5	MIER3	5	56229122	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10		56229122	124686138	22	1156											
VCAN	1462	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	82841438	82841438	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacgtatgcacctgtgtGccaggatacagcggagacca	11	12	0	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	82841438	G	T	82841438	2	4	16	1	0	0	0	0	0	0	0	1	17244	1306	46	5		5	VCAN	5	82841438	Silent	SNP	G	TCGA-KL-8338-01A-11D-2310-10	26612316	82841438	98073822	23	1157											
OR2B2	81697	hgsc.bcm.edu	37	chr6	27879249	27879249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatataaggggattcagcatGggtgcaatgattccacagaa	11	6	1	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	27879249	G	A	27879249	2	1	16	1	0	0	0	0	0	0	0	1	11068	1335	47	4		4	OR2B2	6	27879249	Silent	SNP	G	TCGA-KL-8338-01A-11D-2310-10		27879249	143235818	24	1158											
HLA-B	3106	mdanderson.org	37	chr6	31324046	31324046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctccgcctcacgggccgCctcccacttgcgctgggtga	12	18	1	1	rs148450964	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	31324046	C	T	31324046	3	4	16	1	0	0	0	0	1	0	0	0	7254	739	26	3	591	3	HLA-B	6	31324046	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	3444797	31324046	139791021	25	1159											
HLA-DRB5	3127	mdanderson.org	37	chr6	32497975	32497975	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagctttgccatgtaggaAcctccagggagcttcagaca	11	11	2	1	rs114195860	byfrequency;by1000genomes	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	32497975	A	G	32497975	2	3	16	1	0	0	0	0	0	0	0	1	7267	30	2	2		2	HLA-DRB5	6	32497975	Silent	SNP	A	TCGA-KL-8338-01A-11D-2310-10	1173929	32497975	138617092	26	1160											
CNPY3	10695	bcgsc.ca	37	chr6	42906384	42906384	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtccaagaagaagagcaGcagggccaaggcagcaggcg	16	9	0	3	rs9471969	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	42906384	G	T	42906384	3	4	16	1	0	0	0	0	1	0	0	0	3658	971	34	5	714	5	CNPY3	6	42906384	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	10408409	42906384	128208683	27	1161											
GPR146	115330	ucsc.edu	37	chr7	1097895	1097895	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttgggctctggacgccAcactatctgatcctgctggg	12	12	2	1	rs61910751	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	1097895	A	G	1097895	2	3	16	1	0	0	0	0	0	0	0	1	6709	146	6	2		2	GPR146	7	1097895	Silent	SNP	A	TCGA-KL-8338-01A-11D-2310-10		1097895	158040768	28	1162											
SEMA3C	10512	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	80458056	80458056	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcagaggtcttggtttctcGaagttctgaaagagtgaaca	11	6	4	4	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	80458056	G	A	80458056	4	1	16	1	0	0	0	0	0	1	0	0	14123	1066	37	1	2210	1	SEMA3C	7	80458056	Nonsense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	79360161	80458056	78680607	29	1163											
ZNF789	285989	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	99084964	99084964	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggagaatgtgggaaaacGtttagttttaagaggaatct	13	2	1	2	rs148718204	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	99084964	G	A	99084964	2	1	16	1	0	0	0	0	0	0	0	1	18263	1132	40	1		1	ZNF789	7	99084964	Silent	SNP	G	TCGA-KL-8338-01A-11D-2310-10	18626908	99084964	60053699	30	1164											
CSMD3	114788	bcgsc.ca	37	chr8	113516067	113516067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actaacagatccatcactccGaaaagccaaatgcattgtat	5	11	1	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	113516067	G	A	113516067	3	1	16	1	0	0	0	0	1	0	0	0	3977	1057	37	1	6256	1	CSMD3	8	113516067	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10		113516067	32847955	31	1165											
OLFML2A	169611	broad.mit.edu	37	chr9	127572090	127572090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgccctcgcctgcaggccGctggagtaacatgtacaagc	11	14	0	0	rs201784600		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	127572090	G	A	127572090	3	1	16	1	0	0	0	0	1	0	0	0	10936	1087	38	1	1388	1	OLFML2A	9	127572090	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10		127572090	13641341	32	1166											
GPSM1	26086	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	139231484	139231484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggaccccgggcacctgcCgcccgatgtccgagagaccc	13	18	0	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	139231484	C	T	139231484	3	4	16	1	0	0	0	0	1	0	0	0	6792	652	23	1	547	1	GPSM1	9	139231484	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	11659394	139231484	1981947	33	1167											
TAF1D	79101	broad.mit.edu	37	chr11	93471453	93471453	+	Frame_Shift_Del	DEL	T	T	-													gctggtacctcctctttttcTtttttttatatctctttttc					novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		-	93471453	T	-	93471453	7	5	16	1	0	1	0	1	0	0	0	0	15623	1609	56	0	571	0	TAF1D	11	93471453	Frame_Shift_Del	DEL	T	TCGA-KL-8338-01A-11D-2310-10		93471453	41535063	34	1168											
PEBP1	5037	ucsc.edu	37	chr12	118574067	118574067	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagcctgcaagaagtggAcgagcagccgcagcacccgc	13	14	0	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	118574067	A	G	118574067	3	3	16	1	0	0	0	0	1	0	0	0	11792	275	10	2	55	2	PEBP1	12	118574067	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10		118574067	15277828	35	1169											
CASC5	57082	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	40944268	40944268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attcacctttgtttatgacaCgatacaactcaccatcacct	3	13	3	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	40944268	C	T	40944268	3	4	16	1	0	0	0	0	1	0	0	0	2688	536	19	1	6540	1	CASC5	15	40944268	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		40944268	61587124	36	1170											
SPATA5L1	79029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	45707899	45707899	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgatgttcaagaacgagttCtttctgttctcctgaatgaa	9	7	4	4	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	45707899	C	A	45707899	3	1	16	1	0	0	0	0	1	0	0	0	15112	913	32	5	1777	5	SPATA5L1	15	45707899	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	4763631	45707899	56823493	37	1171											
ZNF609	23060	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	64966530	64966530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagaaactgcccctcccccGtcctaattgactgtccccac	5	19	0	2	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	64966530	G	A	64966530	3	1	16	1	0	0	0	0	1	0	0	0	18140	1145	40	1	1491	1	ZNF609	15	64966530	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	19258631	64966530	37564862	38	1172											
CTU2	348180	broad.mit.edu	37	chr16	88781785	88781785	+	Splice_Site	DEL	A	A	-													aaataaaacattttttaattAaaaaaaaaactctacagtac					novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		-	88781785	A	-	88781785	8	5	16	1	0	1	0	1	0	0	1	0	4079	377	13	0		0	CTU2	16	88781785	Splice_Site	DEL	A	TCGA-KL-8338-01A-11D-2310-10		88781785	1572968	39	1173											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7577114	7577114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctctcccaggacaggcaCaaacacgcacctcaaagctg	9	15	2	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	7577114	C	T	7577114	3	4	16	1	0	0	0	0	1	0	0	0	16486	478	17	4	462	4	TP53	17	7577114	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		7577114	73618096	40	1174											
ZNF624	57547	bcgsc.ca	37	chr17	16527795	16527795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atagcctttgttcgtgtagcCttcttggttgcaggtttggg	13	7	1	0	rs8065506	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	16527795	C	A	16527795	3	1	16	1	0	0	0	0	1	0	0	0	18153	680	24	5	2196	5	ZNF624	17	16527795	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10	8950681	16527795	64667415	41	1175											
UBTF	7343	mdanderson.org	37	chr17	42287519	42287519	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttttggtcttcggctgcCttcttaatccacatcagttt	7	12	3	0	rs2071167	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	42287519	C	T	42287519	2	4	16	1	0	0	0	0	0	0	0	1	17015	680	24	4		4	UBTF	17	42287519	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10	25759724	42287519	38907691	42	1176											
CACNA1G	8913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	48653145	48653145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcgggcagcaggtgtgcGggttgggctgctcagcagcc	17	12	2	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	48653145	G	A	48653145	3	1	16	1	0	0	0	0	1	0	0	0	2569	1116	39	1	1412	1	CACNA1G	17	48653145	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	6365626	48653145	32542065	43	1177											
RNMT	8731	broad.mit.edu	37	chr18	13746253	13746253	+	Frame_Shift_Del	DEL	A	A	-													acaatatgaaactagtctacAaaaaaacatttctggaattc					novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		-	13746253	A	-	13746253	7	5	16	1	0	1	0	1	0	0	0	0	13601	131	5	0	1200	0	RNMT	18	13746253	Frame_Shift_Del	DEL	A	TCGA-KL-8338-01A-11D-2310-10		13746253	64330995	44	1178											
C19orf70	125988	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	5679701	5679701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tagggctgcctggctcttgtCgctgggccccagcagctcct	13	15	1	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	5679701	C	A	5679701	3	1	16	1	0	0	0	0	1	0	0	0	1965	884	31	5	265	5	C19orf70	19	5679701	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		5679701	53449282	45	1179											
FUT3	2525	bcgsc.ca	37	chr19	5843877	5843877	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggagcgaggccgcagcGtctcccgccagcgaaagtag	15	12	1	1	rs28381969	byfrequency	TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		A	5843877	G	A	5843877	3	1	16	1	0	0	0	0	1	0	0	0	6157	1145	40	1	115	1	FUT3	19	5843877	Missense_Mutation	SNP	G	TCGA-KL-8338-01A-11D-2310-10	164176	5843877	53285106	46	1180											
TMEM150B	284417	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	55824239	55824239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctgctacagctggacCggcagggagatgggggaggc	20	9	0	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	55824239	C	T	55824239	2	4	16	1	0	0	0	0	0	0	0	1	16172	639	23	1		1	TMEM150B	19	55824239	Silent	SNP	C	TCGA-KL-8338-01A-11D-2310-10	49980362	55824239	3304744	47	1181											
EDEM2	55741	bcgsc.ca	37	chr20	33711701	33711701	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgctgctcacctggccgaAgtgggtagccctctcgcttc	11	14	2	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		G	33711701	A	G	33711701	3	3	16	1	0	0	0	0	1	0	0	0	4949	72	3	2	642	2	EDEM2	20	33711701	Missense_Mutation	SNP	A	TCGA-KL-8338-01A-11D-2310-10		33711701	29313819	48	1182											
MN1	4330	mdanderson.org	37	chr22	28194900	28194900	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctgctgctgctgctgctgTtgctgttgctgttgctgctg	14	11	0	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		C	28194900	T	C	28194900	2	2	16	1	0	0	0	0	0	0	0	1	9751	1722	60	2		2	MN1	22	28194900	Silent	SNP	T	TCGA-KL-8338-01A-11D-2310-10		28194900	23109666	49	1183											
TRABD	80305	ucsc.edu	37	chr22	50636349	50636349	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgcaccgcaccatcgtcTcggagcgcgacgtctaccta	9	17	2	0	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		C	50636349	T	C	50636349	3	2	16	1	0	0	0	0	1	0	0	0	16540	1551	54	2	795	2	TRABD	22	50636349	Missense_Mutation	SNP	T	TCGA-KL-8338-01A-11D-2310-10	22441449	50636349	668217	50	1184											
AFF2	2334	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	147924508	147924508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaatcgcagcatctgaccCcaggattcaccttacaaagt	8	12	2	1	novel		TCGA-KL-8338-01A-11D-2310-10	TCGA-KL-8338-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9966607-f842-41ec-8d4a-dff22bec65f6	511dfe93-0a8e-4ff1-8724-6f87ec952e5c		T	147924508	C	T	147924508	3	4	16	1	0	0	0	0	1	0	0	0	357	623	22	3	1269	3	AFF2	23	147924508	Missense_Mutation	SNP	C	TCGA-KL-8338-01A-11D-2310-10		147924508	7346052	51	1185											
ATAD3C	219293	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	1391260	1391260	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaggcacatcctgctgtaCgggccaccaggcaccgggaa	12	14	0	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	1391260	C	T	1391260	2	4	17	1	0	0	0	0	0	0	0	1	1079	547	19	1		1	ATAD3C	1	1391260	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10		1391260	247859361	1	1186											
CDK11B	984	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	1647844	1647844	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgtctttcccattcccgGcgagctttatcctgttcttc	6	14	3	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	1647844	G	A	1647844	2	1	17	1	0	0	0	0	0	0	0	1	3156	1190	42	3		3	CDK11B	1	1647844	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	256584	1647844	247602777	2	1187											
HSPG2	3339	ucsc.edu	37	chr1	22211304	22211304	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccgtcaggaatgccaaacAccatgccccgggcgttcatg	10	15	2	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	22211304	A	G	22211304	3	3	17	1	0	0	0	0	1	0	0	0	7491	159	6	2	12056	2	HSPG2	1	22211304	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	20563460	22211304	227039317	3	1188											
RBMXL1	494115	broad.mit.edu;mdanderson.org	37	chr1	89449440	89449440	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttgccaaatactgtttcaaGagctttctcatttgtttccg	6	9	2	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	89449440	G	T	89449440	3	4	17	1	0	0	0	0	1	0	0	0	13245	942	33	5	1106	5	RBMXL1	1	89449440	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	67238136	89449440	159801181	4	1189											
VAV3	10451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	108303461	108303461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taggaaccacaagcaagtctCgaagagtaaatttcccatta	7	9	1	1	rs139065569		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	108303461	C	T	108303461	3	4	17	1	0	0	0	0	1	0	0	0	17239	884	31	1	1678	1	VAV3	1	108303461	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	18854021	108303461	140947160	5	1190											
CD1A	909	mdanderson.org	37	chr1	158226667	158226667	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggattctacccaaagccCgtgtgggtgatgtggatgcg	14	9	2	1	rs1042388	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	158226667	C	T	158226667	2	4	17	1	0	0	0	0	0	0	0	1	3003	639	23	1		1	CD1A	1	158226667	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	49923206	158226667	91023954	6	1191											
OR10J5	127385	broad.mit.edu	37	chr1	159504971	159504971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggagtgatgatggtgtacGtcactgagagaacaaggtct	15	5	2	4	rs149096656	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	159504971	G	A	159504971	3	1	17	1	0	0	0	0	1	0	0	0	10991	1145	40	1	104	1	OR10J5	1	159504971	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	1278304	159504971	89745650	7	1192											
TEDDM1	127670	bcgsc.ca	37	chr1	182368966	182368966	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgataccaaaaggaagagaAgccatagattcccaacagga	9	8	0	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	182368966	A	G	182368966	3	3	17	1	0	0	0	0	1	0	0	0	15853	72	3	2	170	2	TEDDM1	1	182368966	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	22863995	182368966	66881655	8	1193											
KCNF1	3754	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	11053758	11053758	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atcgccatcgccctgcccatCcaccccatcatcaacaactt	3	20	2	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	11053758	C	T	11053758	2	4	17	1	0	0	0	0	0	0	0	1	8087	845	30	3		3	KCNF1	2	11053758	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10		11053758	232145615	9	1194											
HS6ST1	9394	broad.mit.edu;mdanderson.org	37	chr2	129025737	129025737	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgtggccaccaccgccacTaccacttctcaatgatgtgg	8	17	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	129025737	T	A	129025737	3	1	17	1	0	0	0	0	1	0	0	0	7428	1535	53	5	4	5	HS6ST1	2	129025737	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	117971979	129025737	114173636	10	1195			1	13		2	2	22	N	T_C	6.715601e-05
HS6ST1	9394	mdanderson.org	37	chr2	129025758	129025758	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accacttctcaatgatgtggCtcatgtagtcctcggtgggc	11	11	2	1	rs142919429		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	129025758	C	A	129025758	3	1	17	1	0	0	0	0	1	0	0	0	7428	797	28	5	25	5	HS6ST1	2	129025758	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	21	129025758	114173615	11	1196			1	13		2	2	22	N	T_C	6.715601e-05
RUFY4	285180	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	218940146	218940146	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcactcagaaggaggtgataGggatggaggctgaggtcaca	17	6	2	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	218940146	G	C	218940146	3	2	17	1	0	0	0	0	1	0	0	0	13836	1000	35	5	957	5	RUFY4	2	218940146	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	89914388	218940146	24259227	12	1197											
HES6	55502	hgsc.bcm.edu;ucsc.edu	37	chr2	239147555	239147555	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtcgggcccctcagcaggAgcctgactcagttcagcctc	11	15	3	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	239147555	A	G	239147555	2	3	17	1	0	0	0	0	0	0	0	1	7128	291	11	2		2	HES6	2	239147555	Silent	SNP	A	TCGA-KL-8339-01A-11D-2310-10	20207409	239147555	4051818	13	1198											
EOMES	8320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	27763289	27763289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgccccagccgccgccTggtacgggaagagtgagcag	18	13	0	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	27763289	T	C	27763289	3	2	17	1	0	0	0	0	1	0	0	0	5186	1580	55	2	1587	2	EOMES	3	27763289	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10		27763289	170259141	14	1199											
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr3	38739683	38739683	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagattggggtcacagtaGgggggccctgtgttgaggat	19	6	1	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	38739683	G	T	38739683	2	4	17	1	0	0	0	0	0	0	0	1	14009	987	35	5		5	SCN10A	3	38739683	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	10976394	38739683	159282747	15	1200											
PRSS45	377047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	46784475	46784475	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agggggacaactggggggaaGaaggacttcttgtaatgccg	17	6	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	46784475	G	T	46784475	3	4	17	1	0	0	0	0	1	0	0	0	12718	933	33	5	313	5	PRSS45	3	46784475	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	8044792	46784475	151237955	16	1201											
AMIGO3	386724	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	49755708	49755708	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgaacaggtagagcagcacGagcacaaggcccacggcaca	13	13	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	49755708	G	A	49755708	2	1	17	1	0	0	0	0	0	0	0	1	577	1045	37	1		1	AMIGO3	3	49755708	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	2971233	49755708	148266722	17	1202											
SPCS1	28972	mdanderson.org	37	chr3	52741725	52741725	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacacttcctccatggcccaTctatcgccggcatcctctca	6	18	2	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	52741725	T	C	52741725	3	2	17	1	0	0	0	0	1	0	0	0	15123	1435	50	4	421	4	SPCS1	3	52741725	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	2986017	52741725	145280705	18	1203											
PDZRN3	23024	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	73657758	73657758	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aattaacataccacactcggCcggccaccaataatattgaa	5	12	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	73657758	C	G	73657758	2	3	17	1	0	0	0	0	0	0	0	1	11788	726	26	5		5	PDZRN3	3	73657758	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	20916033	73657758	124364672	19	1204											
ROBO1	6091	hgsc.bcm.edu;ucsc.edu	37	chr3	78735005	78735005	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acattagtaattgtgaggtcGccagtctgggagactgaaaa	12	6	1	3	rs80267939	by1000genomes	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	78735005	G	A	78735005	2	1	17	1	0	0	0	0	0	0	0	1	13608	1074	38	1		1	ROBO1	3	78735005	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	5077247	78735005	119287425	20	1205											
PLXND1	23129	broad.mit.edu	37	chr3	129290413	129290414	+	Frame_Shift_Ins	INS	-	-	C													ctgcaccatgtggaaacgctINScaccagccactgtgatggtc					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	129290414	-	C	129290413	7	5	17	1	0	1	1	0	0	0	0	0	12207	1551	54	0	2582	0	PLXND1	3	129290413	Frame_Shift_Ins	INS	-	TCGA-KL-8339-01A-11D-2310-10	50555408	129290413	68732017	21	1206											
COL6A5	256076	mdanderson.org	37	chr3	130113788	130113788	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgatggctctgacagggtAtctaattcagattttgtaac	10	7	3	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	130113788	A	G	130113788	2	3	17	1	0	0	0	0	0	0	0	1	3731	436	16	4		4	COL6A5	3	130113788	Silent	SNP	A	TCGA-KL-8339-01A-11D-2310-10	823375	130113788	67908642	22	1207											
FAM194A	131831	broad.mit.edu	37	chr3	150421548	150421548	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctccacctcTtcctcctcctcctccacctc	0	26	1	0	rs146394127	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	150421548	T	C	150421548	2	2	17	1	0	0	0	0	0	0	0	1	5571	1606	56	2		2	FAM194A	3	150421548	Silent	SNP	T	TCGA-KL-8339-01A-11D-2310-10	20307760	150421548	47600882	23	1208											
SI	6476	bcgsc.ca	37	chr3	164776870	164776870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	acctatggaaattgcagggtCctaataatagaaagcagaaa	9	6	0	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	164776870	C	A	164776870	3	1	17	1	0	0	0	0	1	0	0	0	14395	869	30	5	4352	5	SI	3	164776870	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	14355322	164776870	33245560	24	1209											
MUC4	4585	mdanderson.org	37	chr3	195508057	195508057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggtgtcacctgtggatGctgaggaagtgtcggtgaca	18	6	1	2	rs199527570		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	195508057	G	A	195508057	3	1	17	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195508057	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	30731187	195508057	2514373	25	1210			2	14		3	3	3854	N	G_C	7.527494e-05
MUC4	4585	mdanderson.org	37	chr3	195511238	195511238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggatgctgaggaagtgtCggtgacaggaagaggggtgg	21	3	0	3	rs3103956		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	195511238	C	T	195511238	3	4	17	1	0	0	0	0	1	0	0	0	10056	884	31	1		1	MUC4	3	195511238	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	3181	195511238	2511192	26	1211			2	14		3	3	3854	N	G_C	7.527494e-05
MUC4	4585	mdanderson.org	37	chr3	195511910	195511910	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggatgctgaggaagtgtCggtgacaggaagagaggtgg	20	3	0	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	195511910	C	T	195511910	3	4	17	1	0	0	0	0	1	0	0	0	10056	884	31	1		1	MUC4	3	195511910	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	672	195511910	2510520	27	1212			2	14		3	3	3854	N	G_C	7.527494e-05
HTRA3	94031	mdanderson.org	37	chr4	8294059	8294059	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccttgcagtacgggaactcCgggggaccactggtgaacct	13	13	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	8294059	C	T	8294059	2	4	17	1	0	0	0	0	0	0	0	1	7516	639	23	1		1	HTRA3	4	8294059	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10		8294059	182860217	28	1213											
KCTD8	386617	broad.mit.edu	37	chr4	44177044	44177044	+	Frame_Shift_Del	DEL	T	T	-													ggtatccattgtacaggtgcTtttttagaggggcgatccaa					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		-	44177044	T	-	44177044	7	5	17	1	0	1	0	1	0	0	0	0	8176	1606	56	0	240	0	KCTD8	4	44177044	Frame_Shift_Del	DEL	T	TCGA-KL-8339-01A-11D-2310-10	35882985	44177044	146977232	29	1214											
KCTD8	386617	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	44177218	44177218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatcagtgactttgtcatgTttcctatcttcatgttcttg	6	8	5	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	44177218	T	G	44177218	3	3	17	1	0	0	0	0	1	0	0	0	8176	1722	60	5	414	5	KCTD8	4	44177218	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	174	44177218	146977058	30	1215											
CLOCK	9575	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	56319289	56319289	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgtctttcagccctaacttCtgcataactacaaatggaaa	5	11	3	0	rs1056478	alternate_allele	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	56319289	C	A	56319289	4	1	17	1	0	0	0	0	0	1	0	0	3578	922	32	5	1438	5	CLOCK	4	56319289	Nonsense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	12142071	56319289	134834987	31	1216											
FSTL5	56884	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	162697068	162697068	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atctacaagtccattactgtCtgcatcaaaatatttaaaca	3	9	3	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	162697068	C	T	162697068	3	4	17	1	0	0	0	0	1	0	0	0	6132	913	32	4	2023	4	FSTL5	4	162697068	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	106377779	162697068	28457208	32	1217											
SDHA	6389	mdanderson.org	37	chr5	236642	236642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtgccaaccgcctcgggGcaaactcgctcttggacctg	12	14	1	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	236642	G	A	236642	3	1	17	1	0	0	0	0	1	0	0	0	14060	1203	42	3	1398	3	SDHA	5	236642	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		236642	180678618	33	1218											
CMYA5	202333	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	79039710	79039710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgaggattgaagcctttGttagtgagatagaatccttt	10	6	0	4	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	79039710	G	A	79039710	3	1	17	1	0	0	0	0	1	0	0	0	3619	1377	48	4	10709	4	CMYA5	5	79039710	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	78803068	79039710	101875550	34	1219											
LOX	4015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	121413160	121413160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgtcagagtacttgtagGggttgtaagggtcgtcgccc	15	8	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	121413160	G	A	121413160	3	1	17	1	0	0	0	0	1	0	0	0	8970	1232	43	3	760	3	LOX	5	121413160	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	42373450	121413160	59502100	35	1220											
FSTL4	23105	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	132534972	132534972	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggctgagctggccctgCgggtggctcctttaagttct	14	12	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	132534972	C	A	132534972	3	1	17	1	0	0	0	0	1	0	0	0	6131	768	27	5	188	5	FSTL4	5	132534972	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	11121812	132534972	48380288	36	1221											
NEUROG1	4762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	134871070	134871070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgttcaagttgtgcatgCggttgcgctcgcgatcgttg	14	11	1	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	134871070	C	A	134871070	3	1	17	1	0	0	0	0	1	0	0	0	10431	768	27	5	406	5	NEUROG1	5	134871070	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	2336098	134871070	46044190	37	1222											
DIAPH1	1729	broad.mit.edu	37	chr5	140907261	140907261	+	Frame_Shift_Del	DEL	G	G	-													tcttttgcaagttttcagcaGaaactaaaaaaaaaaaaaaa					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		-	140907261	G	-	140907261	7	5	17	1	0	1	0	1	0	0	0	0	4555	942	33	0	686	0	DIAPH1	5	140907261	Frame_Shift_Del	DEL	G	TCGA-KL-8339-01A-11D-2310-10	6036191	140907261	40007999	38	1223											
NR3C1	2908	mdanderson.org	37	chr5	142779662	142779662	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttagtgtccggtaaaatgAgaggcttgcagtcctcattc	11	8	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	142779662	A	G	142779662	3	3	17	1	0	0	0	0	1	0	0	0	10709	304	11	2	1677	2	NR3C1	5	142779662	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	1872401	142779662	38135598	39	1224											
TCERG1	10915	mdanderson.org	37	chr5	145838659	145838659	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggcccaggcccaggcCcaggcccaggcccaagccca	12	21	0	0	rs111965890	byfrequency;by1000genomes	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	145838659	C	T	145838659	2	4	17	1	0	0	0	0	0	0	0	1	15789	610	22	3		3	TCERG1	5	145838659	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	3058997	145838659	35076601	40	1225											
HIST1H2BO	8348	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr6	27861260	27861260	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	catgcccgacccggctaaatCtgctcctgcccccaaaaagg	8	17	1	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	27861260	C	G	27861260	3	3	17	1	0	0	0	0	1	0	0	0	7212	913	32	5	22	5	HIST1H2BO	6	27861260	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		27861260	143253807	41	1226											
FAM46A	55603	ucsc.edu	37	chr6	82461832	82461832	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagctcgtcctcagacatGgcgaagtacccttcaccctc	8	17	2	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	82461832	G	A	82461832	2	1	17	1	0	0	0	0	0	0	0	1	5614	1335	47	4		4	FAM46A	6	82461832	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	54600572	82461832	88653235	42	1227											
WBSCR17	64409	broad.mit.edu	37	chr7	70880909	70880909	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccctagaggagtatgtccaCaaacgctaccccgggctggt	11	14	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	70880909	C	A	70880909	3	1	17	1	0	0	0	0	1	0	0	0	17370	477	17	5	638	5	WBSCR17	7	70880909	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		70880909	88257754	43	1228											
GNB2	2783	mdanderson.org	37	chr7	100276355	100276355	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gacaaccgcgtgagctgcctCggggtcaccgacgatggcat	14	13	1	1	rs17850902	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	100276355	C	T	100276355	2	4	17	1	0	0	0	0	0	0	0	1	6573	871	31	1		1	GNB2	7	100276355	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	29395446	100276355	58862308	44	1229											
ASB15	142685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	123254584	123254584	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaatgatgaccctgatgaaGaccatcttacaagttatgat	7	8	1	6	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	123254584	G	C	123254584	3	2	17	1	0	0	0	0	1	0	0	0	1023	942	33	5	30	5	ASB15	7	123254584	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	22978229	123254584	35884079	45	1230											
ARHGEF5	7984	broad.mit.edu	37	chr7	144062428	144062428	+	Frame_Shift_Del	DEL	T	T	-													tcaagactggacagtcccccTccctgcctctgctggacgca					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		-	144062428	T	-	144062428	7	5	17	1	0	1	0	1	0	0	0	0	911	1551	54	0	2668	0	ARHGEF5	7	144062428	Frame_Shift_Del	DEL	T	TCGA-KL-8339-01A-11D-2310-10	20807844	144062428	15076235	46	1231											
MTMR9	66036	broad.mit.edu	37	chr8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-													cagtactaagctattaccacAaaaaaaatgggatggtaagt					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		-	11162509	A	-	11162509	7	5	17	1	0	1	0	1	0	0	0	0	10028	131	5	0	591	0	MTMR9	8	11162509	Frame_Shift_Del	DEL	A	TCGA-KL-8339-01A-11D-2310-10		11162509	135201513	47	1232											
CPNE3	8895	broad.mit.edu	37	chr8	87558847	87558847	+	Frame_Shift_Del	DEL	A	A	-													aatttgaatgcataaatgagAaaaaaaggcaaaagaaaaaa					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		-	87558847	A	-	87558847	7	5	17	1	0	1	0	1	0	0	0	0	3842	247	9	0	787	0	CPNE3	8	87558847	Frame_Shift_Del	DEL	A	TCGA-KL-8339-01A-11D-2310-10	76396338	87558847	58805175	48	1233											
KCNQ3	3786	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	133141626	133141626	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtgtccgtctcaccctcGgcgaggtaccgcttctccct	9	17	3	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	133141626	G	A	133141626	2	1	17	1	0	0	0	0	0	0	0	1	8145	1103	39	1		1	KCNQ3	8	133141626	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	45582779	133141626	13222396	49	1234											
PHF20L1	51105	broad.mit.edu;mdanderson.org	37	chr8	133851655	133851655	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agaggtggagtgcaaaatatCgttatgataaggagtggttg	15	2	0	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	133851655	C	T	133851655	3	4	17	1	0	0	0	0	1	0	0	0	11912	884	31	1	2377	1	PHF20L1	8	133851655	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	710029	133851655	12512367	50	1235											
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	139674282	139674282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtacttacgtcccggccGgctgggccctgggggccagg	16	14	1	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	139674282	G	A	139674282	2	1	17	1	0	0	0	0	0	0	0	1	3710	1103	39	1		1	COL22A1	8	139674282	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	5822627	139674282	6689740	51	1236											
GNA14	9630	broad.mit.edu	37	chr9	80049325	80049325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtactccctcctcctgtcGtaacactcctggatgcctgg	9	15	0	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	80049325	G	A	80049325	2	1	17	1	0	0	0	0	0	0	0	1	6558	1140	40	1		1	GNA14	9	80049325	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10		80049325	61164106	52	1237											
HEMGN	55363	broad.mit.edu;mdanderson.org	37	chr9	100693400	100693400	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctccactatttccttttCtatctgtggctgaggctcca	6	12	3	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	100693400	C	T	100693400	3	4	17	1	0	0	0	0	1	0	0	0	7108	922	32	4	1185	4	HEMGN	9	100693400	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	20644075	100693400	40520031	53	1238											
FUBP3	8939	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	133507382	133507382	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacatggctgccaaggtgaAtgggaacccccacagcaccc	10	14	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	133507382	A	G	133507382	3	3	17	1	0	0	0	0	1	0	0	0	6145	101	4	4	1464	4	FUBP3	9	133507382	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	32813982	133507382	7706049	54	1239											
PNPLA7	375775	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	140409846	140409846	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tttaccttgtggggccgaagGgtcagggtcacctgccccgg	15	12	2	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	140409846	G	C	140409846	3	2	17	1	0	0	0	0	1	0	0	0	12250	1232	43	5	2914	5	PNPLA7	9	140409846	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	6902464	140409846	803585	55	1240											
SRGN	5552	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr10	70863802	70863802	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttccatgacaaccttaggTctcttgacaggaatctgccc	7	13	2	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	70863802	T	C	70863802	3	2	17	1	0	0	0	0	1	0	0	0	15248	1667	58	2	413	2	SRGN	10	70863802	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10		70863802	64670945	56	1241											
FUT11	170384	ucsc.edu;bcgsc.ca	37	chr10	75532602	75532602	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaatcttacctccaccTtcagtcgccactcggattac	4	16	4	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	75532602	T	C	75532602	3	2	17	1	0	0	0	0	1	0	0	0	6155	1609	56	2	513	2	FUT11	10	75532602	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10	4668800	75532602	60002145	57	1242											
OPN4	94233	mdanderson.org;bcgsc.ca	37	chr10	88423471	88423471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcccagcaagcaaatgGgcggtccctctacggtcagg	13	13	2	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	88423471	G	T	88423471	3	4	17	1	0	0	0	0	1	0	0	0	10961	1232	43	5	1381	5	OPN4	10	88423471	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	12890869	88423471	47111276	58	1243											
TM9SF3	56889	ucsc.edu	37	chr10	98307653	98307653	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaattcgtaagttaccTccttgtctagcatacagact	8	9	1	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	98307653	T	C	98307653	2	2	17	1	0	0	0	0	0	0	0	1	16083	1565	54	2		2	TM9SF3	10	98307653	Silent	SNP	T	TCGA-KL-8339-01A-11D-2310-10	9884182	98307653	37227094	59	1244											
ANKRD2	26287	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr10	99342111	99342111	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtggcagtccggacagggCaggtggagattgtggagcac	18	8	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	99342111	C	T	99342111	4	4	17	1	0	0	0	0	0	1	0	0	647	711	25	4	801	4	ANKRD2	10	99342111	Nonsense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	1034458	99342111	36192636	60	1245											
MUC5B	727897	broad.mit.edu	37	chr11	1264078	1264079	+	Frame_Shift_Ins	INS	-	-	C													cccctcttcctccctgggcaINSccacctggacccgcctatca					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	1264079	-	C	1264078	7	5	17	1	0	1	1	0	0	0	0	0	10057	159	6	0	6099	0	MUC5B	11	1264078	Frame_Shift_Ins	INS	-	TCGA-KL-8339-01A-11D-2310-10		1264078	133742438	61	1246											
OR8H2	390151	mdanderson.org	37	chr11	55872876	55872876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accttctctcctcaatggccCatgatcgctatgcagcgatc	7	15	2	1	rs2512961	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	55872876	C	T	55872876	3	4	17	1	0	0	0	0	1	0	0	0	11317	594	21	4	360	4	OR8H2	11	55872876	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	54608798	55872876	79133640	62	1247											
OR5M1	390168	mdanderson.org	37	chr11	56380811	56380811	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaagaaatacatgggtgtTtgcaggtgggaattggtcct	15	4	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	56380811	T	C	56380811	2	2	17	1	0	0	0	0	0	0	0	1	11251	1838	64	4		4	OR5M1	11	56380811	Silent	SNP	T	TCGA-KL-8339-01A-11D-2310-10	507935	56380811	78625705	63	1248											
AASDHPPT	60496	bcgsc.ca	37	chr11	105950206	105950206	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttaacaggctggtcgtctgAtgataaggaaattagttgca	11	6	1	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	105950206	A	G	105950206	3	3	17	1	0	0	0	0	1	0	0	0	23	333	12	4	202	4	AASDHPPT	11	105950206	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	49569395	105950206	29056310	64	1249											
HYLS1	219844	bcgsc.ca	37	chr11	125770068	125770068	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acaattatctagtaccaacaGagaagaaaaggtctgcactc	7	9	2	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	125770068	G	C	125770068	3	2	17	1	0	0	0	0	1	0	0	0	7530	943	33	5	807	5	HYLS1	11	125770068	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	19819862	125770068	9236448	65	1250											
CACNA1C	775	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	2794921	2794921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctctcctaccaggatgacGaaaatcggcaactgacgctc	10	13	1	2	rs71458011		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	2794921	G	A	2794921	3	1	17	1	0	0	0	0	1	0	0	0	2565	1059	37	1	6476	1	CACNA1C	12	2794921	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		2794921	131056974	66	1251											
FKBP4	2288	mdanderson.org;bcgsc.ca	37	chr12	2907983	2907983	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaagcccaatgagggtgctAtcgtggagggtgagacagta	15	7	0	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	2907983	A	G	2907983	3	3	17	1	0	0	0	0	1	0	0	0	5959	449	16	4	519	4	FKBP4	12	2907983	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	113062	2907983	130943912	67	1252											
MED21	9412	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr12	27179446	27179446	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agacagcaattaacaaagacCagccagctaaccctacagaa	6	12	0	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	27179446	C	A	27179446	3	1	17	1	0	0	0	0	1	0	0	0	9516	595	21	5	142	5	MED21	12	27179446	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	24271463	27179446	106672449	68	1253											
PDZRN4	29951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	41967467	41967467	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcgccgtcgccgtgagttCatgatgcgaagcaggttaga	14	10	1	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	41967467	C	A	41967467	3	1	17	1	0	0	0	0	1	0	0	0	11789	825	29	5	2997	5	PDZRN4	12	41967467	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	14788021	41967467	91884428	69	1254											
KRT1	3848	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	53073958	53073958	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgacttccaaatccaccacCagcaccaaagctaccaccac	3	20	0	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	53073958	C	G	53073958	3	3	17	1	0	0	0	0	1	0	0	0	8508	594	21	5	1795	5	KRT1	12	53073958	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	11106491	53073958	80777937	70	1255											
RASAL1	8437	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	113543595	113543595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcttgaaggcaaagcgcGtggccaggccggcaggctcc	15	13	1	1	rs149732792		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	113543595	G	A	113543595	3	1	17	1	0	0	0	0	1	0	0	0	13155	1145	40	1	687	1	RASAL1	12	113543595	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	60469637	113543595	20308300	71	1256											
ZMYM5	9205	bcgsc.ca	37	chr13	20426145	20426145	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tagattcaataaacacaacaTcatcatcatcatcatcatct	1	11	8	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	20426145	T	A	20426145	3	1	17	1	0	0	0	0	1	0	0	0	17808	1435	50	5	1968	5	ZMYM5	13	20426145	Missense_Mutation	SNP	T	TCGA-KL-8339-01A-11D-2310-10		20426145	94743733	72	1257											
DIAPH3	81624	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr13	60240728	60240728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagtttaacttataaagctCgtaatcttgccagcagggct	8	10	1	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	60240728	C	T	60240728	3	4	17	1	0	0	0	0	1	0	0	0	4557	884	31	1	13	1	DIAPH3	13	60240728	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	39814583	60240728	54929150	73	1258											
PABPN1	8106	hgsc.bcm.edu	37	chr14	23790864	23790864	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcctgaggagctgctgctGgagcccgagccggagcccga	17	13	0	1	rs188436762	by1000genomes	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	23790864	G	A	23790864	2	1	17	1	0	0	0	0	0	0	0	1	11447	1335	47	4		4	PABPN1	14	23790864	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10		23790864	83558676	74	1259											
ADCY4	196883	hgsc.bcm.edu;mdanderson.org	37	chr14	24788628	24788628	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctccaccccactgaacttGggcttggagagcagctgtat	10	12	1	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	24788628	G	T	24788628	2	4	17	1	0	0	0	0	0	0	0	1	296	1335	47	5		5	ADCY4	14	24788628	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	997764	24788628	82560912	75	1260											
WDR72	256764	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	53908269	53908269	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcttggctcttctcaggaCctcaccaccatagaatgaac	7	14	4	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	53908269	C	A	53908269	3	1	17	1	0	0	0	0	1	0	0	0	17428	507	18	5	1198	5	WDR72	15	53908269	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		53908269	48623123	76	1261											
CD276	80381	broad.mit.edu;mdanderson.org	37	chr15	73996604	73996604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcacgtgctccagctaccGgggctaccctgaggctgagg	13	14	1	2	rs150186392	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	73996604	G	A	73996604	3	1	17	1	0	0	0	0	1	0	0	0	3021	1116	39	1	1178	1	CD276	15	73996604	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	20088335	73996604	28534788	77	1262											
IL32	9235	broad.mit.edu	37	chr16	3119142	3119142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttccaggccatgctgcagcGgctgcagacctggtggcacg	15	13	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	3119142	G	A	3119142	3	1	17	1	0	0	0	0	1	0	0	0	7753	1116	39	1	375	1	IL32	16	3119142	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		3119142	87235611	78	1263											
GDPD3	79153	ucsc.edu;bcgsc.ca	37	chr16	30122776	30122776	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatgaagggcagcagccCcaggtagtaggaaagcagca	16	8	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	30122776	C	T	30122776	3	4	17	1	0	0	0	0	1	0	0	0	6381	623	22	3	332	3	GDPD3	16	30122776	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	27003634	30122776	60231977	79	1264											
RNF167	26001	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	4845935	4845935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatgtgaattccaatgaaCttctgaacatggtgtggaat	9	6	1	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	4845935	C	T	4845935	3	4	17	1	0	0	0	0	1	0	0	0	13553	565	20	4	369	4	RNF167	17	4845935	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		4845935	76349275	80	1265											
KIAA0753	9851	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	6515464	6515464	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctccgtatcgggctgataCttatctacatggaaattttt	8	8	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	6515464	C	T	6515464	2	4	17	1	0	0	0	0	0	0	0	1	8252	564	20	4		4	KIAA0753	17	6515464	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	1669529	6515464	74679746	81	1266											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attctcttcctctgtgcgccGgtctctcccaggacaggcac	9	16	3	0	rs28934574	bycluster	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	7577094	G	A	7577094	3	1	17	1	0	0	0	0	1	0	0	0	16486	1115	39	1	442	1	TP53	17	7577094	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	1061630	7577094	73618116	82	1267											
SGK494	0	hgsc.bcm.edu;ucsc.edu	37	chr17	26941165	26941165	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgctgcccctgccgacaGcttactgctcccattcccag	9	17	0	0	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	26941165	G	C	26941165	3	2	17	1	0	0	0	0	1	0	0	0	14310	962	34	5	1265	5	SGK494	17	26941165	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	19364071	26941165	54254045	83	1268											
FMNL1	752	mdanderson.org	37	chr17	43319770	43319770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactcttgaactgggtggcaCtgaaacccagccagatcacc	9	14	2	3	rs1801353	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	43319770	C	T	43319770	2	4	17	1	0	0	0	0	0	0	0	1	6000	564	20	4		4	FMNL1	17	43319770	Silent	SNP	C	TCGA-KL-8339-01A-11D-2310-10	16378605	43319770	37875440	84	1269											
USP14	9097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	211193	211193	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaccagaagatatcttacGgctttctggtggtggagact	11	8	2	3	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	211193	G	T	211193	3	4	17	1	0	0	0	0	1	0	0	0	17151	1116	39	5	1456	5	USP14	18	211193	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		211193	77866055	85	1270											
APCDD1	147495	broad.mit.edu;mdanderson.org	37	chr18	10485688	10485688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactcagacccggtgtgcaAgcaccccaccttctccatct	6	18	3	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	10485688	A	G	10485688	3	3	17	1	0	0	0	0	1	0	0	0	767	72	3	2	1018	2	APCDD1	18	10485688	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	10274495	10485688	67591560	86	1271											
SERPINB8	5271	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	61654433	61654433	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatggagccaagattctgtgCagaccacccttttcttttct	7	11	3	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	61654433	C	A	61654433	3	1	17	1	0	0	0	0	1	0	0	0	14204	710	25	5	1081	5	SERPINB8	18	61654433	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	51168745	61654433	16422815	87	1272											
FUT3	2525	mdanderson.org	37	chr19	5843877	5843877	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaggagcgaggccgcagcGtctcccgccagcgaaagtag	15	12	1	1	rs28381969	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	5843877	G	A	5843877	3	1	17	1	0	0	0	0	1	0	0	0	6157	1145	40	1	115	1	FUT3	19	5843877	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		5843877	53285106	88	1273											
ZNF208	7757	mdanderson.org	37	chr19	22156850	22156850	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgaattgccttatgtgtaAtaagggttgagaccttactg	10	6	0	2	rs199858837		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	22156850	A	G	22156850	3	3	17	1	0	0	0	0	1	0	0	0	17871	101	4	4	2860	4	ZNF208	19	22156850	Missense_Mutation	SNP	A	TCGA-KL-8339-01A-11D-2310-10	16312973	22156850	36972133	89	1274											
FCGBP	8857	mdanderson.org	37	chr19	40376927	40376927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcgggcaggtgggcggcGgcaggcagggagagtcgggc	24	10	0	1	rs146581881		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	40376927	G	A	40376927	3	1	17	1	0	0	0	0	1	0	0	0	5827	1116	39	1	4774	1	FCGBP	19	40376927	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10	18220077	40376927	18752056	90	1275											
PVRL2	5819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	45368669	45368669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcgcccagatgcacctgCgaaccaccagaatgtggccg	12	15	0	2	rs111808500		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	45368669	C	T	45368669	3	4	17	1	0	0	0	0	1	0	0	0	12932	768	27	1	236	1	PVRL2	19	45368669	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	4991742	45368669	13760314	91	1276											
NOVA2	4858	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	46443970	46443970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acgttggcgtagctgatgttGaggcagctgctgctctgggg	17	8	1	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	46443970	G	A	46443970	2	1	17	1	0	0	0	0	0	0	0	1	10634	1277	45	4		4	NOVA2	19	46443970	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	1075301	46443970	12685013	92	1277											
SIGLEC5	8778	mdanderson.org	37	chr19	52132741	52132741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgaggagcgggtggtctcGgggtccagggggctgagggc	22	9	1	1	rs4802834	bycluster;byfrequency;by2hit2allele	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	52132741	G	A	52132741	2	1	17	1	0	0	0	0	0	0	0	1	14409	1103	39	1		1	SIGLEC5	19	52132741	Silent	SNP	G	TCGA-KL-8339-01A-11D-2310-10	5688771	52132741	6996242	93	1278											
ZNF845	91664	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	53856300	53856300	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgtgattcacacctggCacaacatactagaattcaca	8	11	2	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	53856300	C	A	53856300	3	1	17	1	0	0	0	0	1	0	0	0	18294	710	25	5	2382	5	ZNF845	19	53856300	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	1723559	53856300	5272683	94	1279											
LILRA2	11027	mdanderson.org	37	chr19	55086949	55086949	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccacgggggccagtacagAtgctacagtgcacacaacct	10	14	0	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		G	55086949	A	G	55086949	2	3	17	1	0	0	0	0	0	0	0	1	8848	330	12	4		4	LILRA2	19	55086949	Silent	SNP	A	TCGA-KL-8339-01A-11D-2310-10	1230649	55086949	4042034	95	1280											
ZNF329	79673	mdanderson.org;bcgsc.ca	37	chr19	58639916	58639916	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agtgaagggtttcccacattCgttacatctatatggttttt	8	7	1	1	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		A	58639916	C	A	58639916	4	1	17	1	0	0	0	0	0	1	0	0	17952	893	31	5	674	5	ZNF329	19	58639916	Nonsense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10	3552967	58639916	489067	96	1281											
FAM83D	81610	mdanderson.org	37	chr20	37555116	37555116	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtccgagggcctggacgagGtgcccgccgcctgcctgtcg	16	15	0	0	rs3752290	byfrequency	TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	37555116	G	C	37555116	3	2	17	1	0	0	0	0	1	0	0	0	5685	1261	44	5	123	5	FAM83D	20	37555116	Missense_Mutation	SNP	G	TCGA-KL-8339-01A-11D-2310-10		37555116	25470404	97	1282											
GTPBP5	26164	broad.mit.edu	37	chr20	60774224	60774225	+	Frame_Shift_Ins	INS	-	-	C													ctgctccgggccatttcaaaINScgccagacccgccgtggctt					novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		C	60774225	-	C	60774224	7	5	17	1	0	1	1	0	0	0	0	0	6941	43	2	0	755	0	GTPBP5	20	60774224	Frame_Shift_Ins	INS	-	TCGA-KL-8339-01A-11D-2310-10	23219108	60774224	2251296	98	1283											
NIPSNAP1	8508	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr22	29956774	29956774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctgtgagaagaagccgcCcactgcctcctggttctcct	9	14	2	2	novel		TCGA-KL-8339-01A-11D-2310-10	TCGA-KL-8339-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88432832-7a50-48df-90d5-3a5b7e1f5595	cbaafe8b-1636-4107-aa92-de83895cabff		T	29956774	C	T	29956774	3	4	17	1	0	0	0	0	1	0	0	0	10508	623	22	3	211	3	NIPSNAP1	22	29956774	Missense_Mutation	SNP	C	TCGA-KL-8339-01A-11D-2310-10		29956774	21347792	99	1284											
ELAVL4	1996	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	50659551	50659551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttttctcgcaatacggcCgtatcatcacctcacgaatc	5	14	4	0	rs138779266		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	50659551	C	T	50659551	3	4	18	1	0	0	0	0	1	0	0	0	5091	652	23	1	582	1	ELAVL4	1	50659551	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10		50659551	198591070	1	1285											
MEIS1	4211	broad.mit.edu	37	chr2	66667033	66667033	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgaattagctacttgtAccccccgcgagccgggggtg	13	11	0	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	66667033	A	C	66667033	3	2	18	1	0	0	0	0	1	0	0	0	9544	391	14	5	308	5	MEIS1	2	66667033	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		66667033	176532340	2	1286											
ZNF638	27332	broad.mit.edu	37	chr2	71653715	71653715	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaactctcaaaaatgtTcctttctctgaacttaactt	3	9	2	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	71653715	T	A	71653715	2	1	18	1	0	0	0	0	0	0	0	1	18160	1770	62	5		5	ZNF638	2	71653715	Silent	SNP	T	TCGA-KL-8340-01A-11D-2310-10	4986682	71653715	171545658	3	1287											
SLC4A5	57835	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	74454137	74454137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgaggatccagagcaccgCcaggcagaggatctgcacca	12	12	1	3	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	74454137	C	T	74454137	3	4	18	1	0	0	0	0	1	0	0	0	14755	739	26	3	344	3	SLC4A5	2	74454137	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	2800422	74454137	168745236	4	1288											
NCAPH	23397	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	97032995	97032995	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtcatatacctatttcagGtaaataaaattgaaattcac	4	6	3	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	97032995	G	C	97032995	3	2	18	1	0	0	0	0	1	0	0	0	10288	1275	44	5	1940	5	NCAPH	2	97032995	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	22578858	97032995	146166378	5	1289											
SLC39A10	57181	hgsc.bcm.edu;bcgsc.ca	37	chr2	196548601	196548601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaggataaaaacctggttcCtgaagatgaggcaaatatag	10	5	0	3	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	196548601	C	T	196548601	3	4	18	1	0	0	0	0	1	0	0	0	14711	681	24	4	1193	4	SLC39A10	2	196548601	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	99515606	196548601	46650772	6	1290											
LMCD1	29995	ucsc.edu;mdanderson.org	37	chr3	8579024	8579024	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gacggcatccggatttacaaGaggaaccggatgatcatgac	12	9	1	3	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	8579024	G	A	8579024	2	1	18	1	0	0	0	0	0	0	0	1	8908	933	33	4		4	LMCD1	3	8579024	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10		8579024	189443406	7	1291											
CELSR3	1951	mdanderson.org	37	chr3	48694147	48694147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccggtgaagcgcgggcgGcagacgcacgtgtagcctcc	15	14	1	2	rs2286651	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	48694147	G	A	48694147	2	1	18	1	0	0	0	0	0	0	0	1	3252	1195	42	3		3	CELSR3	3	48694147	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10	40115123	48694147	149328283	8	1292											
FILIP1L	11259	bcgsc.ca	37	chr3	99568907	99568907	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttagtttcctcaattaacTtctcagtaactgttgttact	4	8	2	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	99568907	T	C	99568907	3	2	18	1	0	0	0	0	1	0	0	0	5944	1609	56	2	1823	2	FILIP1L	3	99568907	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	50874760	99568907	98453523	9	1293											
EEFSEC	60678	mdanderson.org	37	chr3	127872506	127872506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatcacgctcgatctgggCttctcgtgcttctcggtgcc	12	14	4	0	rs11711710	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	127872506	C	T	127872506	2	4	18	1	0	0	0	0	0	0	0	1	4968	784	28	4		4	EEFSEC	3	127872506	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	28303599	127872506	70149924	10	1294											
C3orf36	80111	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	133647421	133647421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgctcctcggggtgtggcGcggcccactcaggagcccct	14	16	2	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	133647421	G	A	133647421	3	1	18	1	0	0	0	0	1	0	0	0	2246	1087	38	1	274	1	C3orf36	3	133647421	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	5774915	133647421	64375009	11	1295											
MUC4	4585	mdanderson.org	37	chr3	195509196	195509196	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagaggggtggcGtgacctgtggatgctgagga	20	5	0	4	rs76126602		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	195509196	G	C	195509196	3	2	18	1	0	0	0	0	1	0	0	0	10056	1136	40	5		5	MUC4	3	195509196	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	61861775	195509196	2513234	12	1296											
CENPC1	1060	hgsc.bcm.edu	37	chr4	68357934	68357934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgtttctgggtcctttaCcctcgttggctgcaaaggat	10	10	2	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	68357934	C	T	68357934	3	4	18	1	0	0	0	0	1	0	0	0	3258	507	18	3	368	3	CENPC1	4	68357934	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10		68357934	122796342	13	1297											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	5464930	5464930	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcaagagatttggggactcAgcaggattcaagcgggaaaa	14	6	3	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	5464930	A	G	5464930	3	3	18	1	0	0	0	0	1	0	0	0	8263	188	7	2	5533	2	KIAA0947	5	5464930	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		5464930	175450330	14	1298											
DDX4	54514	broad.mit.edu	37	chr5	55111195	55111195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgcctttagtacatacattCctggcttcagtggtagtaca	8	9	1	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	55111195	C	T	55111195	3	4	18	1	0	0	0	0	1	0	0	0	4392	855	30	3	2160	3	DDX4	5	55111195	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	49646265	55111195	125804065	15	1299											
PCDHGA2	56113	broad.mit.edu;mdanderson.org	37	chr5	140720557	140720557	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatccccgacatcctggcCgacctgggcagcctcgagcc	12	17	0	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	140720557	C	T	140720557	2	4	18	1	0	0	0	0	0	0	0	1	11633	639	23	1		1	PCDHGA2	5	140720557	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	85609362	140720557	40194703	16	1300											
PCDHGB1	56104	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	140731460	140731460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcgccaacgtgagcctgCgcgtgttggtgggcgacctc	15	13	1	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	140731460	C	T	140731460	3	4	18	1	0	0	0	0	1	0	0	0	11641	768	27	1	1635	1	PCDHGB1	5	140731460	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	10903	140731460	40183800	17	1301											
PCDH12	51294	broad.mit.edu	37	chr5	141331089	141331089	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcttggccaagtacttatTtcctcggtggtttggtttgg	13	7	0	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	141331089	T	G	141331089	3	3	18	1	0	0	0	0	1	0	0	0	11589	1841	64	5	619	5	PCDH12	5	141331089	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	599629	141331089	39584171	18	1302											
PHACTR1	221692	broad.mit.edu;bcgsc.ca	37	chr6	12719071	12719071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagattcttctacagtcaagGagctcaaggtaataaaataa	7	6	4	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	12719071	G	A	12719071	3	1	18	1	0	0	0	0	1	0	0	0	11889	1174	41	3	97	3	PHACTR1	6	12719071	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		12719071	158395996	19	1303											
MUC21	394263	mdanderson.org	37	chr6	30955202	30955202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcacagtgtccagtggggCcagcactgccaccaattctg	11	14	1	0	rs2429294		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	30955202	C	T	30955202	3	4	18	1	0	0	0	0	1	0	0	0	10055	739	26	3	1256	3	MUC21	6	30955202	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	18236131	30955202	140159865	20	1304											
KIAA1244	57221	ucsc.edu	37	chr6	138483249	138483249	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaatcctgaggaagctgcAgaaggaggcgtccgggagca	16	8	0	3	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	138483249	A	G	138483249	3	3	18	1	0	0	0	0	1	0	0	0	8278	188	7	2	28	2	KIAA1244	6	138483249	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10	107528047	138483249	32631818	21	1305											
KIAA1244	57221	bcgsc.ca	37	chr6	138583938	138583938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggtgccctggatgagCtcagccaggggaagggcttg	18	9	1	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	138583938	C	T	138583938	3	4	18	1	0	0	0	0	1	0	0	0	8278	797	28	4	1364	4	KIAA1244	6	138583938	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	100689	138583938	32531129	22	1306											
PEX3	8504	broad.mit.edu	37	chr6	143780275	143780275	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatcagagaaatacaggaaAgggaggctgcagaatacatt	11	5	1	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	143780275	A	G	143780275	3	3	18	1	0	0	0	0	1	0	0	0	11827	63	3	2	133	2	PEX3	6	143780275	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10	5196337	143780275	27334792	23	1307											
TCP1	6950	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	160200278	160200278	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctcgaggtttaccattgctCaaatcaagaccaatcctgca	6	12	3	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	160200278	C	T	160200278	2	4	18	1	0	0	0	0	0	0	0	1	15813	825	29	4		4	TCP1	6	160200278	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	16420003	160200278	10914789	24	1308											
GLI3	2737	broad.mit.edu	37	chr7	42079819	42079819	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggcctggctgacagcctGgggctggagaatctggtgcc	16	12	1	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	42079819	G	T	42079819	2	4	18	1	0	0	0	0	0	0	0	1	6495	1335	47	5		5	GLI3	7	42079819	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10		42079819	117058844	25	1309											
ESRP1	54845	bcgsc.ca	37	chr8	95683886	95683886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcatggggttcacatggTtttgaatcaccaggtaagaa	10	7	3	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	95683886	T	C	95683886	3	2	18	1	0	0	0	0	1	0	0	0	5297	1725	60	2	1481	2	ESRP1	8	95683886	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10		95683886	50680136	26	1310											
IFNA7	3444	mdanderson.org	37	chr9	21202040	21202040	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagattcttcccatttgtGccaggagtatcaaggccctc	10	11	2	1	rs200751233		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	21202040	G	C	21202040	3	2	18	1	0	0	0	0	1	0	0	0	7603	1319	46	5	448	5	IFNA7	9	21202040	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		21202040	120011391	27	1311			1	15		2	2	34	N	G_C	5.543064e-05
IFNA7	3444	mdanderson.org	37	chr9	21202073	21202073	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccctcctattacgcaggCtgtgggtctgaggcagatca	13	11	2	2	rs76903863	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	21202073	C	G	21202073	3	3	18	1	0	0	0	0	1	0	0	0	7603	797	28	5	481	5	IFNA7	9	21202073	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	33	21202073	120011358	28	1312			1	15		2	2	34	N	G_C	5.543064e-05
TAF1L	138474	broad.mit.edu;mdanderson.org	37	chr9	32632258	32632258	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcttcagctgagatgctgTctgtgtcagttgataagacc	10	8	4	3	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	32632258	T	C	32632258	3	2	18	1	0	0	0	0	1	0	0	0	15624	1667	58	2	2164	2	TAF1L	9	32632258	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	11430185	32632258	108581173	29	1313											
GDA	9615	broad.mit.edu	37	chr9	74828816	74828816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacagataaatttggacagCgggcatttgtgggcaaagtt	12	5	0	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	74828816	C	T	74828816	3	4	18	1	0	0	0	0	1	0	0	0	6361	759	27	1	505	1	GDA	9	74828816	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	42196558	74828816	66384615	30	1314											
SPTAN1	6709	bcgsc.ca	37	chr9	131388829	131388829	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttccgctcctccctcagcTctgcccaggctgacttcaac	6	20	3	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	131388829	T	C	131388829	3	2	18	1	0	0	0	0	1	0	0	0	15217	1551	54	2	6629	2	SPTAN1	9	131388829	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	56560013	131388829	9824602	31	1315											
SURF4	6836	broad.mit.edu	37	chr9	136231848	136231848	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgcaaacatgctcttcccTtcagaacgggattctgctag	8	14	3	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	136231848	T	C	136231848	2	2	18	1	0	0	0	0	0	0	0	1	15505	1606	56	2		2	SURF4	9	136231848	Silent	SNP	T	TCGA-KL-8340-01A-11D-2310-10	4843019	136231848	4981583	32	1316											
ARL5B	221079	broad.mit.edu	37	chr10	18957460	18957460	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtctgtttttcaacagcTtaatgaatgaagtggttcat	10	5	3	2	rs148579997	alternate_allele	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	18957460	T	C	18957460	2	2	18	1	0	0	0	0	0	0	0	1	944	1623	56	2		2	ARL5B	10	18957460	Silent	SNP	T	TCGA-KL-8340-01A-11D-2310-10		18957460	116577287	33	1317											
MASTL	84930	broad.mit.edu;bcgsc.ca	37	chr10	27447559	27447559	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcactggcactaagcaaaAgcccattcattgtccatttg	7	11	1	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	27447559	A	G	27447559	3	3	18	1	0	0	0	0	1	0	0	0	9405	72	3	2	274	2	MASTL	10	27447559	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10	8490099	27447559	108087188	34	1318											
NRAP	4892	broad.mit.edu;bcgsc.ca	37	chr10	115348753	115348753	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacaacagcagggccttcTtctttttgacgtgcagaatc	8	12	3	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	115348753	T	C	115348753	3	2	18	1	0	0	0	0	1	0	0	0	10717	1609	56	2	22	2	NRAP	10	115348753	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	87901194	115348753	20185994	35	1319											
PANX1	24145	broad.mit.edu	37	chr11	93913343	93913343	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaaaccttggcatgatcaAgatggatgttgttgatggca	12	6	1	3	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	93913343	A	G	93913343	3	3	18	1	0	0	0	0	1	0	0	0	11499	72	3	2	1135	2	PANX1	11	93913343	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		93913343	41093173	36	1320											
OR10G7	390265	broad.mit.edu;mdanderson.org	37	chr11	123909471	123909471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggacaccaaggtcatcaGcattttgggcaccgtgacag	13	10	2	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	123909471	G	T	123909471	3	4	18	1	0	0	0	0	1	0	0	0	10981	962	34	5	701	5	OR10G7	11	123909471	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	29996128	123909471	11097045	37	1321											
DCP1B	196513	broad.mit.edu	37	chr12	2113565	2113566	+	Frame_Shift_Ins	INS	-	-	C													ggctgatgtcgcgcccctttINScccaccaggccgcctgccgc					novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	2113566	-	C	2113565	7	5	18	1	0	1	1	0	0	0	0	0	4331	1770	62	0	1856	0	DCP1B	12	2113565	Frame_Shift_Ins	INS	-	TCGA-KL-8340-01A-11D-2310-10		2113565	131738330	38	1322											
ZNF384	171017	hgsc.bcm.edu	37	chr12	6777081	6777081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggctgttgctgctgctgCtgctgctgctgctgctgctg	16	11	0	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	6777081	C	T	6777081	2	4	18	1	0	0	0	0	0	0	0	1	17980	796	28	4		4	ZNF384	12	6777081	Silent	SNP	C	TCGA-KL-8340-01A-11D-2310-10	4663516	6777081	127074814	39	1323			2	16		2	2	22	N	C	3.52744e-05
ZNF384	171017	broad.mit.edu	37	chr12	6777102	6777102	+	Frame_Shift_Del	DEL	C	C	-													tgctgctgctgctgctgctgCtgctgctgctgtgatgcctg					rs3835029	bycluster;by1000genomes;alternate_allele	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		-	6777102	C	-	6777102	7	5	18	1	0	1	0	1	0	0	0	0	17980	796	28	0	225	0	ZNF384	12	6777102	Frame_Shift_Del	DEL	C	TCGA-KL-8340-01A-11D-2310-10	21	6777102	127074793	40	1324			2	16		2	2	22	N	C	3.52744e-05
CCNT1	904	broad.mit.edu;bcgsc.ca	37	chr12	49087549	49087549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagcatggacttttatgCgcatttttatctcctctggt	8	10	2	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	49087549	C	T	49087549	3	4	18	1	0	0	0	0	1	0	0	0	2963	768	27	1	736	1	CCNT1	12	49087549	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	42310447	49087549	84764346	41	1325											
DDX54	79039	ucsc.edu	37	chr12	113623117	113623117	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatcttccgcctggatcTcaaactcgccgtcctccgag	8	17	3	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	113623117	T	C	113623117	3	2	18	1	0	0	0	0	1	0	0	0	4404	1551	54	2	2588	2	DDX54	12	113623117	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	64535568	113623117	20228778	42	1326											
UBC	7316	broad.mit.edu	37	chr12	125396280	125396280	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttagacaccccccctcaagcGcaggaccaagtgcagagtgg	11	14	1	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	125396280	G	A	125396280	3	1	18	1	0	0	0	0	1	0	0	0	16948	1087	38	1	23	1	UBC	12	125396280	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10	11773163	125396280	8455615	43	1327											
TTC9	23508	mdanderson.org	37	chr14	71109153	71109153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacgggagcgggactcgcgcCcggcctccccggctggggcc	17	17	0	0	rs4902834	byfrequency	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		G	71109153	C	G	71109153	3	3	18	1	0	0	0	0	1	0	0	0	16821	623	22	5	309	5	TTC9	14	71109153	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10		71109153	36240387	44	1328											
KCNK10	54207	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	88652066	88652066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgtccagggagtaattcCggaaggtcttgtagattttc	11	9	1	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	88652066	C	T	88652066	3	4	18	1	0	0	0	0	1	0	0	0	8120	652	23	1	190	1	KCNK10	14	88652066	Missense_Mutation	SNP	C	TCGA-KL-8340-01A-11D-2310-10	17542913	88652066	18697474	45	1329											
AQR	9716	broad.mit.edu	37	chr15	35219284	35219284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcccgagtatctacttctGccacatttgagagggcaaaa	8	11	2	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	35219284	G	A	35219284	3	1	18	1	0	0	0	0	1	0	0	0	837	1319	46	4	3479	4	AQR	15	35219284	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		35219284	67312108	46	1330											
ZSCAN10	84891	broad.mit.edu	37	chr16	3139359	3139359	+	Frame_Shift_Del	DEL	A	A	-													aagctgcgaccgcacgtctgAcagctgtagggccgctcgcc					novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		-	3139359	A	-	3139359	7	5	18	1	0	1	0	1	0	0	0	0	18330	273	10	0	270	0	ZSCAN10	16	3139359	Frame_Shift_Del	DEL	A	TCGA-KL-8340-01A-11D-2310-10		3139359	87215394	47	1331											
RAP1GAP2	23108	hgsc.bcm.edu	37	chr17	2901620	2901620	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccaatttcttacatgccTacatcgtcgtgcaggtcgag	8	13	1	0	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		C	2901620	T	C	2901620	3	2	18	1	0	0	0	0	1	0	0	0	13130	1522	53	2	1204	2	RAP1GAP2	17	2901620	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10		2901620	78293590	48	1332											
PSG3	5671	broad.mit.edu	37	chr19	43233954	43233954	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gacattcagggtgactgggtAactgcggatgccaccatatc	12	10	1	1	rs1071709		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	43233954	A	T	43233954	3	4	18	1	0	0	0	0	1	0	0	0	12745	362	13	5	334	5	PSG3	19	43233954	Missense_Mutation	SNP	A	TCGA-KL-8340-01A-11D-2310-10		43233954	15895029	49	1333											
AKT1S1	84335	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr19	50374973	50374973	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcctcgctcaggctgccaTctgaaagagagggtggactt	12	11	3	2	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		A	50374973	T	A	50374973	3	1	18	1	0	0	0	0	1	0	0	0	479	1449	50	5	320	5	AKT1S1	19	50374973	Missense_Mutation	SNP	T	TCGA-KL-8340-01A-11D-2310-10	7141019	50374973	8754010	50	1334											
TIAM1	7074	broad.mit.edu	37	chr21	32639202	32639202	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgtgcgagaggcgcagGgagcgggaagtgtgcttgcg	20	7	1	1	rs139712298	byfrequency;alternate_allele	TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	32639202	G	T	32639202	2	4	18	1	0	0	0	0	0	0	0	1	15994	1219	43	5		5	TIAM1	21	32639202	Silent	SNP	G	TCGA-KL-8340-01A-11D-2310-10		32639202	15490693	51	1335											
SSX3	10214	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	48213477	48213477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttatcaaaatcattcccctgGaagtctgtgacccgtttatt	6	10	3	1	novel		TCGA-KL-8340-01A-11D-2310-10	TCGA-KL-8340-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d113ce88-04ab-4675-b363-92f80c28de34	44123123-63e3-46bd-85ee-c66a37c942a3		T	48213477	G	T	48213477	3	4	18	1	0	0	0	0	1	0	0	0	15305	1165	41	5	396	5	SSX3	23	48213477	Missense_Mutation	SNP	G	TCGA-KL-8340-01A-11D-2310-10		48213477	107057083	52	1336											
ACAP3	116983	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	1235261	1235261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catctcacgcttttccaccgCagagtcgatcaccagctggt	8	15	2	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	1235261	C	G	1235261	3	3	19	1	0	0	0	0	1	0	0	0	120	710	25	5	1880	5	ACAP3	1	1235261	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		1235261	248015360	1	1337											
TAS1R1	80835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	6634949	6634949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttctctgcccaggtgggcGatgagaggatgcagtgcctc	14	12	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	6634949	G	A	6634949	3	1	19	1	0	0	0	0	1	0	0	0	15663	1058	37	1	767	1	TAS1R1	1	6634949	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	5399688	6634949	242615672	2	1338											
PER3	8863	broad.mit.edu	37	chr1	7887663	7887663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgatatcaccctcaatgTcgtcagcaatgagtccaact	7	13	3	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	7887663	T	C	7887663	3	2	19	1	0	0	0	0	1	0	0	0	11810	1667	58	2	2716	2	PER3	1	7887663	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	1252714	7887663	241362958	3	1339											
RERE	473	broad.mit.edu	37	chr1	8424203	8424203	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtttgaacataaacggtggCgggtccacgggcttctcaat	13	9	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	8424203	C	T	8424203	2	4	19	1	0	0	0	0	0	0	0	1	13323	755	27	1		1	RERE	1	8424203	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	536540	8424203	240826418	4	1340											
TCHH	7062	bcgsc.ca	37	chr1	152082364	152082364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcctcttcctcccgaCattgcctctcccgctcctgg	7	20	2	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	152082364	C	T	152082364	3	4	19	1	0	0	0	0	1	0	0	0	15804	478	17	4	2506	4	TCHH	1	152082364	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	143658161	152082364	97168257	5	1341											
DARC	2532	mdanderson.org	37	chr1	159175354	159175354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcccagatggagactatgGtgccaacctggaagcagctg	12	11	0	2	rs12075	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	159175354	G	A	159175354	3	1	19	1	0	0	0	0	1	0	0	0	4272	1261	44	3	158	3	DARC	1	159175354	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	7092990	159175354	90075267	6	1342											
NUAK2	81788	ucsc.edu;bcgsc.ca	37	chr1	205274455	205274455	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacacccagggaccagctgTccacctgagagagatggggg	15	11	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	205274455	T	C	205274455	3	2	19	1	0	0	0	0	1	0	0	0	10792	1667	58	2	1199	2	NUAK2	1	205274455	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	46099101	205274455	43976166	7	1343											
C1orf35	79169	broad.mit.edu	37	chr1	228289842	228289843	+	Frame_Shift_Ins	INS	-	-	C													gaggctgccgaggtcccgggINScccgccgctctctacgcggt					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	228289843	-	C	228289842	7	5	19	1	0	1	1	0	0	0	0	0	2058	1203	42	0	331	0	C1orf35	1	228289842	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	23015387	228289842	20960779	8	1344											
GALNT2	2590	broad.mit.edu;mdanderson.org	37	chr1	230372423	230372423	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagctgaggacggggctctcTtggggaaaattgagaaagtg	16	5	1	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	230372423	T	C	230372423	2	2	19	1	0	0	0	0	0	0	0	1	6267	1606	56	2		2	GALNT2	1	230372423	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	2082581	230372423	18878198	9	1345											
OR2T4	127074	broad.mit.edu	37	chr1	248524966	248524967	+	Frame_Shift_Ins	INS	-	-	G													tcagacaatccaaacatccaINSatggccaatatcacctggat					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	248524967	-	G	248524966	7	5	19	1	0	1	1	0	0	0	0	0	11106	117	5	0	86	0	OR2T4	1	248524966	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	18152543	248524966	725655	10	1346	32	2									
OR2T4	127074	bcgsc.ca	37	chr1	248524967	248524967	+	Missense_Mutation	SNP	A	A	C													tcagacaatccaaacatccaAtggccaatatcacctggatg					rs200915140	alternate_allele	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	248524967	A	C	248524967	3	2	19	1	0	0	0	0	1	0	0	0	11106	101	4	5	87	5	OR2T4	1	248524967	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	1	248524967	725654	11	1347	32	2									
RANBP2	5903	broad.mit.edu	37	chr2	109383357	109383357	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatgccaaactagagcAgttggcagcaaaatttaaaa	10	6	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	109383357	A	G	109383357	3	3	19	1	0	0	0	0	1	0	0	0	13120	188	7	2	6440	2	RANBP2	2	109383357	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10		109383357	133816016	12	1348											
POTEE	445582	mdanderson.org	37	chr2	132021815	132021815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgagcaggagatggccacGgcggcctccagctcctccct	12	16	0	1	rs7424053	bycluster	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	132021815	G	A	132021815	2	1	19	1	0	0	0	0	0	0	0	1	12344	1103	39	1		1	POTEE	2	132021815	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	22638458	132021815	111177558	13	1349											
ZDBF2	57683	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	207171302	207171302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgaccagtctcaagtagccGaaatagagcgtcagaaagtg	11	9	2	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	207171302	G	A	207171302	3	1	19	1	0	0	0	0	1	0	0	0	17704	1059	37	1	2060	1	ZDBF2	2	207171302	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	75149487	207171302	36028071	14	1350											
SMARCAL1	50485	broad.mit.edu	37	chr2	217340073	217340073	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagttccaactgtcggagAggcatgctgtggccgtgctg	15	10	0	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	217340073	A	G	217340073	3	3	19	1	0	0	0	0	1	0	0	0	14871	295	11	2	2376	2	SMARCAL1	2	217340073	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	10168771	217340073	25859300	15	1351											
GLB1L	79411	broad.mit.edu;mdanderson.org	37	chr2	220102299	220102299	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaattggaaatgttttggAgtagaatgtggggccagaag	14	2	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	220102299	A	G	220102299	3	3	19	1	0	0	0	0	1	0	0	0	6484	304	11	2	348	2	GLB1L	2	220102299	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	2762226	220102299	23097074	16	1352											
ZCWPW2	152098	mdanderson.org;bcgsc.ca	37	chr3	28533617	28533617	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgtttcattgtcttacaGataaatccgaaacacatgac	5	10	2	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	28533617	G	A	28533617	5	1	19	1	0	0	0	0	0	0	1	0	17703	956	33	4	624	4	ZCWPW2	3	28533617	Splice_Site	SNP	G	TCGA-KL-8341-01A-11D-2310-10		28533617	169488813	17	1353											
ZCWPW2	152098	mdanderson.org	37	chr3	28533652	28533652	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgacaaagttgctgcactGgtcaagaaaagggtaagatt	11	6	1	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	28533652	G	A	28533652	2	1	19	1	0	0	0	0	0	0	0	1	17703	1335	47	4		4	ZCWPW2	3	28533652	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	35	28533652	169488778	18	1354											
GADL1	339896	broad.mit.edu;mdanderson.org	37	chr3	30875422	30875422	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggttccaggccacagagtCagccctattgtttaaacaaa	9	10	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	30875422	C	T	30875422	3	4	19	1	0	0	0	0	1	0	0	0	6237	826	29	4	612	4	GADL1	3	30875422	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	2341770	30875422	167147008	19	1355											
ERC2	26059	broad.mit.edu;hgsc.bcm.edu	37	chr3	55984500	55984502	+	In_Frame_Del	DEL	CTT	CTT	-													gctgtcttctcgcctgcgcaCttcttctagtaactgagcat					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	55984502	CTT	-	55984500	7	5	19	1	0	1	0	1	0	0	0	0	5250	565	20	0	537	0	ERC2	3	55984500	In_Frame_Del	DEL	CTT	TCGA-KL-8341-01A-11D-2310-10	25109078	55984500	142037930	20	1356	33	2									
ERC2	26059	bcgsc.ca	37	chr3	55984501	55984503	+	In_Frame_Del	DEL	CTT	CTT	-													ctgtcttctcgcctgcgcacTtcttctagtaactgagcatt					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	55984503	CTT	-	55984501	7	5	19	1	0	1	0	1	0	0	0	0	5250	1606	56	0	538	0	ERC2	3	55984501	In_Frame_Del	DEL	CTT	TCGA-KL-8341-01A-11D-2310-10	1	55984501	142037929	21	1357	33	2									
OR5H6	79295	mdanderson.org	37	chr3	97983602	97983602	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaccaatgaactatgcatTcagctattagtcttgtcatt	6	8	3	2	rs75354046	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	97983602	T	C	97983602	2	2	19	1	0	0	0	0	0	0	0	1	11242	1771	62	4		4	OR5H6	3	97983602	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	41999101	97983602	100038828	22	1358											
HEG1	57493	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	124692706	124692706	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atacggggacatttggaaatCtccacttttgaagatgagtt	10	6	1	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	124692706	C	G	124692706	3	3	19	1	0	0	0	0	1	0	0	0	7102	913	32	5	288	5	HEG1	3	124692706	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	26709104	124692706	73329724	23	1359											
PIK3CB	5291	broad.mit.edu	37	chr3	138433374	138433374	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttttcgttgatttcttcGtttttactttatccaaaact	4	7	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	138433374	G	T	138433374	3	4	19	1	0	0	0	0	1	0	0	0	11994	1145	40	5	2036	5	PIK3CB	3	138433374	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	13740668	138433374	59589056	24	1360											
CPA3	1359	broad.mit.edu;mdanderson.org	37	chr3	148583133	148583133	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggtttgattgctaccacTcttgcaattgctcctgtccg	10	11	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	148583133	T	C	148583133	2	2	19	1	0	0	0	0	0	0	0	1	3820	1538	54	2		2	CPA3	3	148583133	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	10149759	148583133	49439297	25	1361											
MUC4	4585	mdanderson.org	37	chr3	195507502	195507502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagcgtcggtgacaAgaagaggggtggtgtcacct	17	7	1	4	rs113781173	alternate_allele	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	195507502	A	G	195507502	3	3	19	1	0	0	0	0	1	0	0	0	10056	72	3	2		2	MUC4	3	195507502	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	46924369	195507502	2514928	26	1362											
GAK	2580	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	843563	843563	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtacggctgccccgcagcCtatgggtgacaggcggtgta	15	12	0	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	843563	C	T	843563	5	4	19	1	0	0	0	0	0	0	1	0	6249	695	24	4	105	4	GAK	4	843563	Splice_Site	SNP	C	TCGA-KL-8341-01A-11D-2310-10		843563	190310713	27	1363											
ENAM	10117	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr4	71509879	71509879	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accagtcctctgtatacagaCggtagtcataccaagcagac	8	12	2	2	rs143333113	by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	71509879	C	T	71509879	2	4	19	1	0	0	0	0	0	0	0	1	5151	535	19	1		1	ENAM	4	71509879	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	70666316	71509879	119644397	28	1364											
NDST4	64579	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	115998171	115998171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caatgttcgaaaacttctccGaagtttcacaataagattca	5	9	3	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	115998171	G	A	115998171	3	1	19	1	0	0	0	0	1	0	0	0	10337	1057	37	1	2648	1	NDST4	4	115998171	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	44488292	115998171	75156105	29	1365											
MAML3	55534	broad.mit.edu	37	chr4	140811108	140811109	+	In_Frame_Ins	INS	-	-	TGT													gctgctgctgctgctgctgcINStgctgctgctgctgttgctg					rs66794549	alternate_allele	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		TGT	140811109	-	TGT	140811108	7	5	19	1	0	1	1	0	0	0	0	0	9284	796	28	0	1942	0	MAML3	4	140811108	In_Frame_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	24812937	140811108	50343168	30	1366											
DEPDC1B	55789	broad.mit.edu	37	chr5	59894911	59894911	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatccttttacctgcttcagTttcttctttttctctttgtt	3	10	4	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	59894911	T	C	59894911	2	2	19	1	0	0	0	0	0	0	0	1	4477	1722	60	2		2	DEPDC1B	5	59894911	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10		59894911	121020349	31	1367											
NR2F1	7025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	92923831	92923831	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatctgcgagctggccgcGcgcctgctcttcagcgccgt	12	16	3	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	92923831	G	A	92923831	2	1	19	1	0	0	0	0	0	0	0	1	10706	1074	38	1		1	NR2F1	5	92923831	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	33028920	92923831	87991429	32	1368											
APC	324	broad.mit.edu	37	chr5	112155000	112155001	+	Frame_Shift_Ins	INS	-	-	G													gaaacctgttgggagtggcaINSggaagctcatgaaccaggca					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	112155001	-	G	112155000	7	5	19	1	0	1	1	0	0	0	0	0	765	188	7	0	1305	0	APC	5	112155000	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	19231169	112155000	68760260	33	1369											
PCDHB4	56131	mdanderson.org	37	chr5	140503002	140503002	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacatcggcagtgtcagcgcCacagacagagactcgggcac	12	14	1	2	rs61741603	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	140503002	C	A	140503002	2	1	19	1	0	0	0	0	0	0	0	1	11623	581	21	5		5	PCDHB4	5	140503002	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	28348002	140503002	40412258	34	1370											
PCDH1	5097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	141236865	141236865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccatcaggggtggtgcGctcatagtgatcctcaggca	14	11	3	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	141236865	G	A	141236865	3	1	19	1	0	0	0	0	1	0	0	0	11585	1087	38	1	450	1	PCDH1	5	141236865	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	733863	141236865	39678395	35	1371											
RNF145	153830	mdanderson.org	37	chr5	158595995	158595995	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcaagaatgcccgatgaAcaacctgcagttctatcagc	9	11	2	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	158595995	A	G	158595995	3	3	19	1	0	0	0	0	1	0	0	0	13542	43	2	2	1000	2	RNF145	5	158595995	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	17359130	158595995	22319265	36	1372											
GABRP	2568	broad.mit.edu	37	chr5	170239019	170239019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatcaacagctccatctcCagctttaaacggaagatcag	6	12	4	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	170239019	C	T	170239019	2	4	19	1	0	0	0	0	0	0	0	1	6226	581	21	4		4	GABRP	5	170239019	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	11643024	170239019	10676241	37	1373											
OR5V1	81696	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	29323612	29323612	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcagattgcaatgtaacgatCatatgccattgctgccagta	9	9	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	29323612	C	A	29323612	3	1	19	1	0	0	0	0	1	0	0	0	11263	826	29	5	607	5	OR5V1	6	29323612	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		29323612	141791455	38	1374											
HLA-G	3135	mdanderson.org	37	chr6	29797430	29797430	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagatacacgtgccatgtGcagcatgaggggctgccgga	15	10	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	29797430	G	T	29797430	2	4	19	1	0	0	0	0	0	0	0	1	7270	1306	46	5		5	HLA-G	6	29797430	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	473818	29797430	141317637	39	1375											
KPNA5	3841	broad.mit.edu;mdanderson.org	37	chr6	117013533	117013533	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctaacagcaacacagaaAtttagaaagctgctttctaa	6	9	1	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	117013533	A	G	117013533	2	3	19	1	0	0	0	0	0	0	0	1	8494	98	4	4		4	KPNA5	6	117013533	Silent	SNP	A	TCGA-KL-8341-01A-11D-2310-10	87216103	117013533	54101534	40	1376											
MCM9	254394	bcgsc.ca	37	chr6	119136171	119136171	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggggagcttgggcctctcTcacctcggttcttcctttca	11	13	4	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	119136171	T	C	119136171	3	2	19	1	0	0	0	0	1	0	0	0	9471	1566	54	2		2	MCM9	6	119136171	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	2122638	119136171	51978896	41	1377											
SYNE1	23345	broad.mit.edu;bcgsc.ca	37	chr6	152642498	152642498	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattttttcaatgttctgtcGgtgatttgtggcttctgtta	9	6	3	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	152642498	G	A	152642498	4	1	19	1	0	0	0	0	0	1	0	0	15546	1124	39	1	10607	1	SYNE1	6	152642498	Nonsense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	33506327	152642498	18472569	42	1378											
SLC29A4	222962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	5334542	5334542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgctgcccaagcggtacaCgcagggggtgatgaccgggg	18	10	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	5334542	C	T	5334542	3	4	19	1	0	0	0	0	1	0	0	0	14635	536	19	1	614	1	SLC29A4	7	5334542	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		5334542	153804121	43	1379											
TNRC18	84629	hgsc.bcm.edu	37	chr7	5428642	5428642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcagcgccgcattcttGgtcttggactcagccaggaa	13	12	3	0	rs144662045	by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	5428642	G	A	5428642	2	1	19	1	0	0	0	0	0	0	0	1	16443	1335	47	4		4	TNRC18	7	5428642	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	94100	5428642	153710021	44	1380											
POM121	9883	mdanderson.org	37	chr7	72412591	72412591	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacccttcaggcagagacgGctaccaaaccccaagccaca	7	17	1	1	rs2530522		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	72412591	G	A	72412591	3	1	19	1	0	0	0	0	1	0	0	0	12319	1203	42	3	1302	3	POM121	7	72412591	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	66983949	72412591	86726072	45	1381											
MUC17	140453	hgsc.bcm.edu;mdanderson.org	37	chr7	100681510	100681510	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtaccagcataccaacTtcaactcttagtgaaggaac	8	10	2	1	rs116767656	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	100681510	T	C	100681510	2	2	19	1	0	0	0	0	0	0	0	1	10052	1596	56	2		2	MUC17	7	100681510	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	28268919	100681510	58457153	46	1382											
MUC17	140453	mdanderson.org	37	chr7	100681951	100681951	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgaggctagcacccattcCacaactcctgttgacaccag	7	15	1	2	rs141774606		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	100681951	C	A	100681951	2	1	19	1	0	0	0	0	0	0	0	1	10052	581	21	5		5	MUC17	7	100681951	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	441	100681951	58456712	47	1383											
TAS2R4	50832	mdanderson.org	37	chr7	141478800	141478800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taacacatcatttaatatcaGtgagggcatcttgtctttag	7	7	4	1	rs2234002	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	141478800	G	A	141478800	3	1	19	1	0	0	0	0	1	0	0	0	15678	1029	36	4	514	4	TAS2R4	7	141478800	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	40796849	141478800	17659863	48	1384											
TAS2R38	5726	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	141672852	141672852	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gggagacagtcagcatcccaGaagaaaccagaaacaatagg	11	9	1	4	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	141672852	G	A	141672852	3	1	19	1	0	0	0	0	1	0	0	0	15676	942	33	4	367	4	TAS2R38	7	141672852	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	194052	141672852	17465811	49	1385											
PRSS1	5644	mdanderson.org	37	chr7	142460752	142460752	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtggtctgcaatggaCagctccaaggagttgtctcc	12	12	2	0	rs140793689	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	142460752	C	G	142460752	3	3	19	1	0	0	0	0	1	0	0	0	12703	479	17	5	643	5	PRSS1	7	142460752	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	787900	142460752	16677911	50	1386											
ADAM28	10863	broad.mit.edu;ucsc.edu	37	chr8	24170913	24170913	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttcaggggctacttcagTcagggggatcaaagatactt	11	7	4	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	24170913	T	C	24170913	2	2	19	1	0	0	0	0	0	0	0	1	246	1664	58	2		2	ADAM28	8	24170913	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10		24170913	122193109	51	1387											
PABPC1	26986	broad.mit.edu	37	chr8	101733701	101733702	+	Frame_Shift_Ins	INS	-	-	A													tgcagacccggatggagaggINSatgggcccggccgggctgaa					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	101733702	-	A	101733701	7	5	19	1	0	1	1	0	0	0	0	0	11442	1164	41	0	1855	0	PABPC1	8	101733701	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	77562788	101733701	44630321	52	1388	34	2	1	17		3	2	23	N	T_-	8.527673e-05
PABPC1	26986	broad.mit.edu	37	chr8	101733702	101733703	+	Frame_Shift_Ins	INS	-	-	G													gcagacccggatggagaggaINStgggcccggccgggctgaac					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	101733703	-	G	101733702	7	5	19	1	0	1	1	0	0	0	0	0	11442	333	12	0	1856	0	PABPC1	8	101733702	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	1	101733702	44630320	53	1389	34	2	1	17		3	2	23	N	T_-	8.527673e-05
PABPC1	26986	broad.mit.edu	37	chr8	101733723	101733723	+	Frame_Shift_Del	DEL	T	T	-													tgggcccggccgggctgaacTtctcgtagagcatcgcctcg					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	101733723	T	-	101733723	7	5	19	1	0	1	0	1	0	0	0	0	11442	1609	56	0	1877	0	PABPC1	8	101733723	Frame_Shift_Del	DEL	T	TCGA-KL-8341-01A-11D-2310-10	21	101733723	44630299	54	1390			1	17		3	2	23	N	T_-	8.527673e-05
UBR5	51366	mdanderson.org;bcgsc.ca	37	chr8	103277497	103277497	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actagagccatggcgctttcGgttttcctgctaacagagaa	10	10	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	103277497	G	A	103277497	4	1	19	1	0	0	0	0	0	1	0	0	17011	1124	39	1	995	1	UBR5	8	103277497	Nonsense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	1543774	103277497	43086525	55	1391											
KLF10	7071	mdanderson.org	37	chr8	103663512	103663512	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgctgctgaaggggaaaAcccaggagcaggggcaatgg	16	7	0	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	103663512	A	G	103663512	3	3	19	1	0	0	0	0	1	0	0	0	8399	43	2	2	402	2	KLF10	8	103663512	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	386015	103663512	42700510	56	1392											
RIMS2	9699	broad.mit.edu	37	chr8	104513292	104513292	+	Splice_Site	DEL	T	T	-													aggagcagtccgtgctcaagTaaggacctggctccatattc					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	104513292	T	-	104513292	8	5	19	1	0	1	0	1	0	0	1	0	13463	1652	57	0	180	0	RIMS2	8	104513292	Splice_Site	DEL	T	TCGA-KL-8341-01A-11D-2310-10	849780	104513292	41850730	57	1393											
LRP12	29967	ucsc.edu;bcgsc.ca	37	chr8	105510296	105510296	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acaagcacaatttggttcctCagatttccctgtgaagatgt	8	9	1	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	105510296	C	T	105510296	3	4	19	1	0	0	0	0	1	0	0	0	9026	835	29	4	2107	4	LRP12	8	105510296	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	997004	105510296	40853726	58	1394											
HAS2	3037	broad.mit.edu	37	chr8	122626903	122626903	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacaagtgatgtttgtgaaAccacattgcattgtacagcc	8	10	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	122626903	A	G	122626903	3	3	19	1	0	0	0	0	1	0	0	0	7020	43	2	2	557	2	HAS2	8	122626903	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	17116607	122626903	23737119	59	1395											
ZC3H3	23144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	144550602	144550602	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggatgtaggggcagcgctcGccacggttgcacctgccgaa	15	12	0	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	144550602	G	A	144550602	2	1	19	1	0	0	0	0	0	0	0	1	17674	1074	38	1		1	ZC3H3	8	144550602	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	21923699	144550602	1813420	60	1396											
FAM22G	441457	broad.mit.edu	37	chr9	99701229	99701231	+	In_Frame_Del	DEL	CTT	CTT	-													aagaggcctcagcccatcacCttctcctgccagcaagtcca					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	99701231	CTT	-	99701229	7	5	19	1	0	1	0	1	0	0	0	0	5591	681	24	0	2050	0	FAM22G	9	99701229	In_Frame_Del	DEL	CTT	TCGA-KL-8341-01A-11D-2310-10		99701229	41512202	61	1397											
OR13C2	392376	broad.mit.edu	37	chr9	107367738	107367738	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccagaaagaagtacataggGgtgtgaaggtgagggtccaa	15	6	0	4	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	107367738	G	C	107367738	2	2	19	1	0	0	0	0	0	0	0	1	11013	1219	43	5		5	OR13C2	9	107367738	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	7666509	107367738	33845693	62	1398											
KCNMA1	3778	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	78649263	78649263	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	catctctcagccggtaaattCcaaaacaaagcatattatat	4	10	2	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	78649263	C	A	78649263	3	1	19	1	0	0	0	0	1	0	0	0	8134	855	30	5	340	5	KCNMA1	10	78649263	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		78649263	56885484	63	1399											
MUC6	4588	mdanderson.org	37	chr11	1018031	1018031	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaggatgttgccgtcatGggacctgtggaagagaaggg	17	5	1	2	rs10751678	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	1018031	G	A	1018031	2	1	19	1	0	0	0	0	0	0	0	1	10058	1335	47	4		4	MUC6	11	1018031	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10		1018031	133988485	64	1400											
MUC2	4583	mdanderson.org	37	chr11	1092459	1092459	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accacccccagccctccaacCaccaccacaaccacccctcc	1	27	0	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	1092459	C	A	1092459	2	1	19	1	0	0	0	0	0	0	0	1	10053	581	21	5		5	MUC2	11	1092459	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	74428	1092459	133914057	65	1401											
MUC2	4583	mdanderson.org	37	chr11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatcaccaccaccactaCggtgaccccaaccccaacac	3	22	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	1092953	C	T	1092953	3	4	19	1	0	0	0	0	1	0	0	0	10053	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	494	1092953	133913563	66	1402											
OR2AG1	144125	mdanderson.org	37	chr11	6806963	6806963	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccatatgccatcaaatgAggggaggaagaaagcccttg	12	9	1	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	6806963	A	G	6806963	3	3	19	1	0	0	0	0	1	0	0	0	11063	304	11	2	697	2	OR2AG1	11	6806963	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	5714010	6806963	128199553	67	1403											
PARVA	55742	broad.mit.edu	37	chr11	12399324	12399324	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccggaggaagaaagccAaggagggtgagtgcggccag	19	8	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	12399324	A	G	12399324	3	3	19	1	0	0	0	0	1	0	0	0	11547	131	5	4	132	4	PARVA	11	12399324	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	5592361	12399324	122607192	68	1404											
RASSF10	644943	broad.mit.edu	37	chr11	13031416	13031416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatcgtggagaagtggcGcggctttgagcgcatcctcc	14	11	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	13031416	G	A	13031416	3	1	19	1	0	0	0	0	1	0	0	0	13177	1087	38	1	623	1	RASSF10	11	13031416	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	632092	13031416	121975100	69	1405											
OR5AK2	390181	broad.mit.edu;ucsc.edu	37	chr11	56756940	56756940	+	Silent	SNP	T	T	A													ttctgtgatgttccccctatTcttgctctttcatgctccaa					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	56756940	T	A	56756940	2	1	19	1	0	0	0	0	0	0	0	1	11221	1771	62	5		5	OR5AK2	11	56756940	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	43725524	56756940	78249576	70	1406	35	2									
OR5AK2	390181	bcgsc.ca	37	chr11	56756941	56756941	+	Missense_Mutation	SNP	C	C	T													tctgtgatgttccccctattCttgctctttcatgctccaat					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	56756941	C	T	56756941	3	4	19	1	0	0	0	0	1	0	0	0	11221	913	32	4	555	4	OR5AK2	11	56756941	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	1	56756941	78249575	71	1407	35	2									
UCP2	7351	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	73686146	73686146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacgttccaggaacccaagCggagaaaggagggcatgaac	13	11	0	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	73686146	C	T	73686146	3	4	19	1	0	0	0	0	1	0	0	0	17037	768	27	1	97	1	UCP2	11	73686146	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	16929205	73686146	61320370	72	1408											
DLG2	1740	broad.mit.edu	37	chr11	84996301	84996301	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtcatggcacggagcaAgaagggatgtcttctcccat	12	10	4	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	84996301	A	G	84996301	3	3	19	1	0	0	0	0	1	0	0	0	4592	72	3	2	3083	2	DLG2	11	84996301	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	11310155	84996301	50010215	73	1409											
APOA1	335	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	116707862	116707862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcttgctgccagaaatgccGagcctggctccctgagggtg	13	12	1	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	116707862	G	A	116707862	3	1	19	1	0	0	0	0	1	0	0	0	782	1057	37	1	756	1	APOA1	11	116707862	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	31711561	116707862	18298654	74	1410											
KDM5A	5927	broad.mit.edu;mdanderson.org	37	chr12	416696	416696	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctcgagccgcctgtTccaccatacgctggctcaac	7	15	2	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	416696	T	C	416696	3	2	19	1	0	0	0	0	1	0	0	0	8194	1783	62	4	1242	4	KDM5A	12	416696	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		416696	133435199	75	1411											
KRT2	3849	broad.mit.edu	37	chr12	53045623	53045624	+	In_Frame_Ins	INS	-	-	GCC													aagccgctgccacctccaaaINSgctgctgccgcctccaaaac					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		GCC	53045624	-	GCC	53045623	7	5	19	1	0	1	1	0	0	0	0	0	8518	72	3	0	1651	0	KRT2	12	53045623	In_Frame_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	52628927	53045623	80806272	76	1412											
SRGAP1	57522	hgsc.bcm.edu;ucsc.edu	37	chr12	64436722	64436722	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agacatcaacggcgaagctcTgtaaagaaaattgaaaaaat	8	6	2	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	64436722	T	A	64436722	2	1	19	1	0	0	0	0	0	0	0	1	15245	1567	55	5		5	SRGAP1	12	64436722	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	11391099	64436722	69415173	77	1413											
SLC35E3	55508	broad.mit.edu;mdanderson.org	37	chr12	69140526	69140526	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atccagaccttctgctaccaGaaaaccttctccaccagaat	4	15	2	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	69140526	G	A	69140526	2	1	19	1	0	0	0	0	0	0	0	1	14684	933	33	4		4	SLC35E3	12	69140526	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	4703804	69140526	64711369	78	1414											
CEP290	80184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	88444148	88444148	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	taccttcaaatgctgcttttCtagatctgacattttgagct	6	9	3	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	88444148	C	T	88444148	3	4	19	1	0	0	0	0	1	0	0	0	3282	922	32	4	255	4	CEP290	12	88444148	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	19303622	88444148	45407747	79	1415											
ATP12A	479	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr13	25255781	25255781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggggatggcaaggagaagTataggggtctgaagaacaac	17	4	1	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	25255781	T	C	25255781	3	2	19	1	0	0	0	0	1	0	0	0	1126	1638	57	2	97	2	ATP12A	13	25255781	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		25255781	89914097	80	1416											
FNDC3A	22862	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	49771038	49771038	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accattttcagaaaaatgtgAtattactacagcccctgggc	7	10	1	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	49771038	A	T	49771038	3	4	19	1	0	0	0	0	1	0	0	0	6018	333	12	5	2337	5	FNDC3A	13	49771038	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	24515257	49771038	65398840	81	1417											
OR4M1	441670	broad.mit.edu;mdanderson.org	37	chr14	20248894	20248894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctatgctaccatcatgaatcGacgtctctgctgtatcctgg	8	12	2	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	20248894	G	A	20248894	3	1	19	1	0	0	0	0	1	0	0	0	11154	1058	37	1	415	1	OR4M1	14	20248894	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10		20248894	87100646	82	1418											
OR4K5	79317	mdanderson.org	37	chr14	20389305	20389305	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagacagctttttttgtgaTcttcctcgagtcaccaaact	7	10	2	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	20389305	T	C	20389305	2	2	19	1	0	0	0	0	0	0	0	1	11152	1432	50	4		4	OR4K5	14	20389305	Silent	SNP	T	TCGA-KL-8341-01A-11D-2310-10	140411	20389305	86960235	83	1419											
OR4K17	390436	broad.mit.edu	37	chr14	20586424	20586424	+	Frame_Shift_Del	DEL	T	T	-													tcttctttggcccatgcatcTttatctacatttggcccttc					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	20586424	T	-	20586424	7	5	19	1	0	1	0	1	0	0	0	0	11150	1609	56	0	861	0	OR4K17	14	20586424	Frame_Shift_Del	DEL	T	TCGA-KL-8341-01A-11D-2310-10	197119	20586424	86763116	84	1420	36	4									
OR4K17	390436	bcgsc.ca	37	chr14	20586425	20586425	+	Frame_Shift_Del	DEL	T	T	-													cttctttggcccatgcatctTtatctacatttggcccttcg					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		-	20586425	T	-	20586425	7	5	19	1	0	1	0	1	0	0	0	0	11150	1841	64	0	862	0	OR4K17	14	20586425	Frame_Shift_Del	DEL	T	TCGA-KL-8341-01A-11D-2310-10	1	20586425	86763115	85	1421	36	4									
OR4K17	390436	broad.mit.edu	37	chr14	20586433	20586434	+	Frame_Shift_Ins	INS	-	-	T													cccatgcatctttatctacaINStttggcccttcggcaaccac					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	20586434	-	T	20586433	7	5	19	1	0	1	1	0	0	0	0	0	11150	217	8	0	870	0	OR4K17	14	20586433	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	8	20586433	86763107	86	1422	36	4									
OR4K17	390436	bcgsc.ca	37	chr14	20586434	20586435	+	Frame_Shift_Ins	INS	-	-	T													ccatgcatctttatctacatINSttggcccttcggcaaccact					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	20586435	-	T	20586434	7	5	19	1	0	1	1	0	0	0	0	0	11150	1493	52	0	871	0	OR4K17	14	20586434	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	1	20586434	86763106	87	1423	36	4									
MYH7	4625	mdanderson.org	37	chr14	23885477	23885477	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgatctggttgaactcCagctgggcccggaggatctt	13	11	2	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	23885477	C	T	23885477	2	4	19	1	0	0	0	0	0	0	0	1	10117	581	21	4		4	MYH7	14	23885477	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	3299043	23885477	83464063	88	1424											
MYH7	4625	mdanderson.org	37	chr14	23886718	23886718	+	Silent	SNP	G	G	A													cacccagggcccaccttgtcGaagttcctctgcttcttgtc					rs182311329		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	23886718	G	A	23886718	2	1	19	1	0	0	0	0	0	0	0	1	10117	1049	37	1		1	MYH7	14	23886718	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	1241	23886718	83462822	89	1425	37	2									
MYH7	4625	mdanderson.org	37	chr14	23886724	23886724	+	Silent	SNP	C	C	T													gggcccaccttgtcgaagttCctctgcttcttgtccagggc					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	23886724	C	T	23886724	2	4	19	1	0	0	0	0	0	0	0	1	10117	854	30	3		3	MYH7	14	23886724	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	6	23886724	83462816	90	1426	37	2									
AHNAK2	113146	mdanderson.org	37	chr14	105408107	105408107	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccacctgggggcccttgaGgtccactttgggcatcttga	13	12	1	2	rs200549975		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	105408107	G	T	105408107	3	4	19	1	0	0	0	0	1	0	0	0	415	1000	35	5	3710	5	AHNAK2	14	105408107	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	81521383	105408107	1941433	91	1427			2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105408140	105408140	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	catcttgaaactgggcatctCcaccttgggcaggtgccctt	10	13	2	1	rs201663085		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	105408140	C	G	105408140	3	3	19	1	0	0	0	0	1	0	0	0	415	864	30	5	3743	5	AHNAK2	14	105408140	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	33	105408140	1941400	92	1428			2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415160	105415160	+	Missense_Mutation	SNP	C	C	G													ctggccagcctggaccttcaCgtcggcggaaaggggctgaa					rs201874096		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	105415160	C	G	105415160	3	3	19	1	0	0	0	0	1	0	0	0	415	536	19	5	10763	5	AHNAK2	14	105415160	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	7020	105415160	1934380	93	1429	38	3	2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415166	105415166	+	Missense_Mutation	SNP	C	C	T													agcctggaccttcacgtcggCggaaaggggctgaatgctga					rs201667039		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	105415166	C	T	105415166	3	4	19	1	0	0	0	0	1	0	0	0	415	768	27	1	10769	1	AHNAK2	14	105415166	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	6	105415166	1934374	94	1430	38	3	2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415171	105415171	+	Missense_Mutation	SNP	A	A	G													ggaccttcacgtcggcggaaAggggctgaatgctgaggtca					rs201552064		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	105415171	A	G	105415171	3	3	19	1	0	0	0	0	1	0	0	0	415	72	3	2	10774	2	AHNAK2	14	105415171	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	5	105415171	1934369	95	1431	38	3	2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415196	105415196	+	Missense_Mutation	SNP	T	T	C													ctgaatgctgaggtcagtggTcttgaggtccccctgcatgg					rs200598682		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	105415196	T	C	105415196	3	2	19	1	0	0	0	0	1	0	0	0	415	1667	58	2	10799	2	AHNAK2	14	105415196	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	25	105415196	1934344	96	1432	39	2	2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415200	105415200	+	Silent	SNP	G	G	C													atgctgaggtcagtggtcttGaggtccccctgcatggaggg					rs10145566	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	105415200	G	C	105415200	2	2	19	1	0	0	0	0	0	0	0	1	415	1277	45	5		5	AHNAK2	14	105415200	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	4	105415200	1934340	97	1433	39	2	2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415737	105415737	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agactcacgtcggcctccacCttgggtgcaggcacatccac	10	16	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	105415737	C	T	105415737	2	4	19	1	0	0	0	0	0	0	0	1	415	680	24	4		4	AHNAK2	14	105415737	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	537	105415737	1933803	98	1434			2	18		9	6	7642	N	T_G_C_A	1.851059e-10
AHNAK2	113146	mdanderson.org	37	chr14	105415748	105415748	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctccaccttgggtgcagGcacatccaccgaggcctcga	12	16	0	0	rs118171013	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	105415748	G	A	105415748	3	1	19	1	0	0	0	0	1	0	0	0	415	1203	42	3	11351	3	AHNAK2	14	105415748	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	11	105415748	1933792	99	1435			2	18		9	6	7642	N	T_G_C_A	1.851059e-10
CAPN3	825	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	42684852	42684852	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tacagacaatcattccggttCagtatgagacaagaatggcc	9	9	2	3	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	42684852	C	A	42684852	3	1	19	1	0	0	0	0	1	0	0	0	2653	827	29	5	1039	5	CAPN3	15	42684852	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		42684852	59846540	100	1436											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	42742931	42742931	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcttccacagtgggcttgttCgagggatttgagtgttctcc	12	9	2	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	42742931	C	T	42742931	2	4	19	1	0	0	0	0	0	0	0	1	17742	871	31	1		1	ZFP106	15	42742931	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	58079	42742931	59788461	101	1437											
SLC12A1	6557	broad.mit.edu;mdanderson.org	37	chr15	48518686	48518686	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctaacaggtcttggagttctCataattcttctttccaccat	5	11	4	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	48518686	C	G	48518686	2	3	19	1	0	0	0	0	0	0	0	1	14480	813	29	5		5	SLC12A1	15	48518686	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10	5775755	48518686	54012706	102	1438											
DTWD1	56986	hgsc.bcm.edu	37	chr15	49926993	49926994	+	Splice_Site	INS	-	-	A													ctgatgagcgacttcaaggtINSaaaaaaaaaatgtttttttg					rs111446752		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	49926994	-	A	49926993	8	5	19	1	0	1	1	0	0	0	1	0	4828	1652	57	0	679	0	DTWD1	15	49926993	Splice_Site	INS	-	TCGA-KL-8341-01A-11D-2310-10	1408307	49926993	52604399	103	1439											
FAM81A	145773	mdanderson.org	37	chr15	59808946	59808946	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttgatggtcagagaacaAggcaagaagaggagaagatg	14	4	1	6	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		G	59808946	A	G	59808946	3	3	19	1	0	0	0	0	1	0	0	0	5677	63	3	2	915	2	FAM81A	15	59808946	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	9881953	59808946	42722446	104	1440											
VPS13C	54832	hgsc.bcm.edu	37	chr15	62261606	62261606	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgagtaacattaaatactaGaattgtatcttcttctttct	4	7	4	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	62261606	G	A	62261606	2	1	19	1	0	0	0	0	0	0	0	1	17297	933	33	4		4	VPS13C	15	62261606	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	2452660	62261606	40269786	105	1441											
HERC1	8925	mdanderson.org	37	chr15	64010819	64010819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaataagttcaaggttcTtgcaagcaagtaaacgactt	8	6	2	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	64010819	T	C	64010819	3	2	19	1	0	0	0	0	1	0	0	0	7115	1609	56	2	10885	2	HERC1	15	64010819	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	1749213	64010819	38520573	106	1442											
SNX1	6642	broad.mit.edu	37	chr15	64426911	64426912	+	Frame_Shift_Ins	INS	-	-	A													gcagcgctggcaggatgcccINSaagccacactgcagaagaag					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	64426912	-	A	64426911	7	5	19	1	0	1	1	0	0	0	0	0	14978	595	21	0	1316	0	SNX1	15	64426911	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	416092	64426911	38104481	107	1443											
FAM174B	400451	broad.mit.edu	37	chr15	93173567	93173567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgtgtcttctttaacctcTttcccgacctgcaggagaag	9	12	3	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	93173567	T	C	93173567	3	2	19	1	0	0	0	0	1	0	0	0	5539	1609	56	2	134	2	FAM174B	15	93173567	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10	28746656	93173567	9357825	108	1444											
PDIA2	64714	mdanderson.org	37	chr16	334732	334732	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgccatgcggctggaggaCgaggcggccgcccaggcgct	18	13	0	0	rs45593734	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	334732	C	T	334732	2	4	19	1	0	0	0	0	0	0	0	1	11747	535	19	1		1	PDIA2	16	334732	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10		334732	90020021	109	1445											
C16orf11	146325	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr16	613379	613379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagccacactacatcccgCggccctggggcaaaccctac	9	17	0	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	613379	C	T	613379	3	4	19	1	0	0	0	0	1	0	0	0	1823	759	27	1	87	1	C16orf11	16	613379	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	278647	613379	89741374	110	1446											
TSC2	7249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	2113034	2113034	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtcctttgtgctgctcAtcaacaggcagttctatgag	10	10	3	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	2113034	A	T	2113034	3	4	19	1	0	0	0	0	1	0	0	0	16711	217	8	5	1473	5	TSC2	16	2113034	Missense_Mutation	SNP	A	TCGA-KL-8341-01A-11D-2310-10	1499655	2113034	88241719	111	1447											
ABCC6	368	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	16251599	16251599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtatcttagcccaaagtccCggaactcgatctgcccgccc	9	16	2	0	rs2238472	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	16251599	C	T	16251599	3	4	19	1	0	0	0	0	1	0	0	0	57	652	23	1	728	1	ABCC6	16	16251599	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	14138565	16251599	74103154	112	1448											
ARHGAP17	55114	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	24950855	24950855	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctggaaagcgggggatatGtgctttctatttagagtgcc	15	6	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	24950855	G	T	24950855	3	4	19	1	0	0	0	0	1	0	0	0	869	1368	48	5	1107	5	ARHGAP17	16	24950855	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	8699256	24950855	65403898	113	1449											
SLC7A6	9057	broad.mit.edu;mdanderson.org	37	chr16	68325151	68325151	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gggatttctatgccaattgtGacgctcatctacatcctgac	8	11	3	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	68325151	G	A	68325151	2	1	19	1	0	0	0	0	0	0	0	1	14799	1277	45	4		4	SLC7A6	16	68325151	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	43374296	68325151	22029602	114	1450											
CLEC18C	283971	mdanderson.org	37	chr16	70211266	70211266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggaacatgcagctgctGcccgcgggcttggcgtcctt	15	13	0	0	rs142678589		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	70211266	G	A	70211266	2	1	19	1	0	0	0	0	0	0	0	1	3533	1306	46	4		4	CLEC18C	16	70211266	Silent	SNP	G	TCGA-KL-8341-01A-11D-2310-10	1886115	70211266	20143487	115	1451											
PKD1L2	114780	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	81242140	81242140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggtaactgccctgagtcGgacacaggtttccaaagtag	11	10	0	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	81242140	G	A	81242140	3	1	19	1	0	0	0	0	1	0	0	0	12045	1116	39	1	6892	1	PKD1L2	16	81242140	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	11030874	81242140	9112613	116	1452											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7577064	7577064	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtggtgaggctccccttTcttgcggagattctcttcct	10	13	2	2	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	7577064	T	A	7577064	4	1	19	1	0	0	0	0	0	1	0	0	16486	1792	62	5	412	5	TP53	17	7577064	Nonsense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		7577064	73618146	117	1453											
CCDC144B	284047	broad.mit.edu	37	chr17	18498496	18498497	+	RNA	INS	-	-	A													gctgttttatctgcaggcctINSgaaaaaaaaaaacaattcct					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	18498497	-	A	18498496	6	5	19	0	1	1	1	0	0	0	0	0	2803	1594	55	0		0	CCDC144B	17	18498496	RNA	INS	-	TCGA-KL-8341-01A-11D-2310-10	10921432	18498496	62696714	118	1454											
KCNH4	23415	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	40321548	40321548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtggtctggaagtattcgaGcatgcgctgcttgagcggcc	15	10	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	40321548	G	A	40321548	3	1	19	1	0	0	0	0	1	0	0	0	8095	971	34	4	1548	4	KCNH4	17	40321548	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	21823052	40321548	40873662	119	1455											
PDK2	5164	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	48184157	48184157	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atcctcccttcctgcctgcaGccctcatctttgatggcagc	7	17	2	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	48184157	G	C	48184157	5	2	19	1	0	0	0	0	0	0	1	0	11755	985	34	5	535	5	PDK2	17	48184157	Splice_Site	SNP	G	TCGA-KL-8341-01A-11D-2310-10	7862609	48184157	33011053	120	1456											
MYO5B	4645	mdanderson.org	37	chr18	47364066	47364067	+	Missense_Mutation	DNP	GC	GC	AT													tggcggatgatagcttccagGcagtatgagttatccccatc					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		AT	47364067	GC	AT	47364066	3	1	19	1	0	0	0	0	1	0	0	0	10157	1195	42	3	603	3	MYO5B	18	47364066	Missense_Mutation	DNP	GC	TCGA-KL-8341-01A-11D-2310-10		47364066	30713182	121	1457											
LDLR	3949	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	11210912	11210912	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcagtgggcgacagatgCgaaagaaacgagttccagtg	13	9	1	2	rs2228671	bycluster;byfrequency;by1000genomes	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	11210912	C	A	11210912	4	1	19	1	0	0	0	0	0	1	0	0	8766	776	27	5	87	5	LDLR	19	11210912	Nonsense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10		11210912	47918071	122	1458											
LILRA1	11024	mdanderson.org	37	chr19	55107397	55107397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accccctggacatcctgatcGcaggtgaggagcccagcggg	14	14	0	2	rs149029653	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	55107397	G	A	55107397	3	1	19	1	0	0	0	0	1	0	0	0	8847	1087	38	1	973	1	LILRA1	19	55107397	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	43896485	55107397	4021586	123	1459											
SLC9A8	23315	hgsc.bcm.edu;bcgsc.ca	37	chr20	48467342	48467342	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgtgtgttttatttTacaggctgatgtaatctcta	9	4	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	48467342	T	C	48467342	3	2	19	1	0	0	0	0	1	0	0	0	14818	1769	61	4		4	SLC9A8	20	48467342	Missense_Mutation	SNP	T	TCGA-KL-8341-01A-11D-2310-10		48467342	14558178	124	1460											
CABIN1	23523	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr22	24472140	24472140	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtcagagacgcccatgctCccatcctccctcatgctgct	7	17	2	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	24472140	C	T	24472140	2	4	19	1	0	0	0	0	0	0	0	1	2553	842	30	3		3	CABIN1	22	24472140	Silent	SNP	C	TCGA-KL-8341-01A-11D-2310-10		24472140	26832426	125	1461											
SYN3	8224	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	33327400	33327400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactttggtcccatttctcaCgacctgcatgtccaccatgc	6	16	1	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	33327400	C	T	33327400	3	4	19	1	0	0	0	0	1	0	0	0	15543	536	19	1	1350	1	SYN3	22	33327400	Missense_Mutation	SNP	C	TCGA-KL-8341-01A-11D-2310-10	8855260	33327400	17977166	126	1462											
MAPK11	5600	broad.mit.edu	37	chr22	50703803	50703804	+	Frame_Shift_Ins	INS	-	-	C													aacgctctcatcatatggctINScggcctctggctcatcctcg					novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	50703804	-	C	50703803	7	5	19	1	0	1	1	0	0	0	0	0	9350	1551	54	0	140	0	MAPK11	22	50703803	Frame_Shift_Ins	INS	-	TCGA-KL-8341-01A-11D-2310-10	17376403	50703803	600763	127	1463											
TAF9B	51616	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	77395087	77395087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcggagcgttcttgggagGcgccatcttgcccgactcca	12	14	3	0	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	77395087	G	A	77395087	3	1	19	1	0	0	0	0	1	0	0	0	15637	1203	42	3	761	3	TAF9B	23	77395087	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10		77395087	77875473	128	1464											
MAGEC1	9947	mdanderson.org	37	chrX	140994320	140994320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtctcctctccagattcctgGgagcccctccttctcctcca	6	19	3	1	rs7063168	byfrequency	TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		T	140994320	G	T	140994320	3	4	19	1	0	0	0	0	1	0	0	0	9257	1232	43	5	1136	5	MAGEC1	23	140994320	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	63599233	140994320	14276240	129	1465											
IKBKG	8517	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chrX	153770612	153770612	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtcccatcaggtggggaaaGatgctgttccaggcgcacac	14	11	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		C	153770612	G	C	153770612	3	2	19	1	0	0	0	0	1	0	0	0	7674	942	33	5	136	5	IKBKG	23	153770612	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10	12776292	153770612	1499948	130	1466											
ZFY	7544	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrY	2829115	2829115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttaatttttattctttaagGagctgatgctacacacatgg	7	6	1	1	novel		TCGA-KL-8341-01A-11D-2310-10	TCGA-KL-8341-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e9032df3-8692-4146-a867-b9b64c9b310a	9f1b349f-503a-4237-8da4-9100de610e1e		A	2829115	G	A	2829115	3	1	19	1	0	0	0	0	1	0	0	0	17767	1188	41	3	68	3	ZFY	24	2829115	Missense_Mutation	SNP	G	TCGA-KL-8341-01A-11D-2310-10		2829115	56544451	131	1467											
CPSF3L	54973	broad.mit.edu	37	chr1	1254710	1254710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtggacagccaccaccTtcttcatgcagtctttgatc	10	12	3	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	1254710	T	C	1254710	3	2	20	1	0	0	0	0	1	0	0	0	3856	1609	56	2	1463	2	CPSF3L	1	1254710	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		1254710	247995911	1	1468											
GALE	2582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	24122442	24122442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtaggggagggtcctcaGgcttgcgtgccaaagcctga	16	9	1	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	24122442	G	A	24122442	2	1	20	1	0	0	0	0	0	0	0	1	6256	987	35	4		4	GALE	1	24122442	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10	22867732	24122442	225128179	2	1469											
CNKSR1	10256	broad.mit.edu	37	chr1	26509852	26509852	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggttcccactgactccCgactgcagatccagcctgga	10	15	1	2	rs200619424		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	26509852	C	T	26509852	4	4	20	1	0	0	0	0	0	1	0	0	3635	644	23	1	730	1	CNKSR1	1	26509852	Nonsense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	2387410	26509852	222740769	3	1470											
RNF115	27246	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	145687066	145687066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcacttctttcacagcaGttgtattgtgccgtggctag	9	10	3	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	145687066	G	A	145687066	3	1	20	1	0	0	0	0	1	0	0	0	13525	1029	36	4	788	4	RNF115	1	145687066	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	119177214	145687066	103563555	4	1471											
BCAN	63827	ucsc.edu;bcgsc.ca	37	chr1	156626107	156626107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcccctgccacaatggtgGgacatgcttggaggaggagg	16	10	0	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	156626107	G	A	156626107	3	1	20	1	0	0	0	0	1	0	0	0	1349	1232	43	3	2080	3	BCAN	1	156626107	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	10939041	156626107	92624514	5	1472											
OR2B11	127623	ucsc.edu	37	chr1	247615262	247615262	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttaggggagtcccctaagAagctatggttgtcacttttc	10	9	1	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	247615262	A	G	247615262	3	3	20	1	0	0	0	0	1	0	0	0	11067	246	9	4	933	4	OR2B11	1	247615262	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	90989155	247615262	1635359	6	1473											
AFF3	3899	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	100167950	100167950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtccctatgacaggtgggCgctgttccgcagccagtgca	14	12	0	1	rs138104794		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	100167950	C	T	100167950	3	4	20	1	0	0	0	0	1	0	0	0	358	768	27	1	17	1	AFF3	2	100167950	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		100167950	143031423	7	1474											
RBMS1	5937	broad.mit.edu;hgsc.bcm.edu	37	chr2	161135123	161135123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagggctgatcattgatgcgGgctgtagtgacatggtgtgc	17	6	1	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	161135123	G	T	161135123	3	4	20	1	0	0	0	0	1	0	0	0	13240	1232	43	5	234	5	RBMS1	2	161135123	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	60967173	161135123	82064250	8	1475											
USP19	10869	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	49153200	49153200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggggttacatgctccatgGgtgtgcgggttgccacactg	15	9	0	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	49153200	G	T	49153200	3	4	20	1	0	0	0	0	1	0	0	0	17156	1232	43	5	2684	5	USP19	3	49153200	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10		49153200	148869230	9	1476											
GHSR	2693	broad.mit.edu	37	chr3	172165985	172165985	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttggtggtggtgcgcagCtcgcggaagcgcgacaccac	17	11	0	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	172165985	C	T	172165985	2	4	20	1	0	0	0	0	0	0	0	1	6431	796	28	4		4	GHSR	3	172165985	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	123012785	172165985	25856445	10	1477											
TMEM41A	90407	ucsc.edu	37	chr3	185214712	185214712	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgctccttccggtactcTcgaaggacctcagagagctc	11	13	2	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	185214712	T	C	185214712	2	2	20	1	0	0	0	0	0	0	0	1	16268	1538	54	2		2	TMEM41A	3	185214712	Silent	SNP	T	TCGA-KL-8342-01A-11D-2310-10	13048727	185214712	12807718	11	1478											
ZCCHC4	29063	broad.mit.edu	37	chr4	25353254	25353254	+	Frame_Shift_Del	DEL	T	T	-													attttctggattttcccctaTttttttgaatcccgaatttg					novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		-	25353254	T	-	25353254	7	5	20	1	0	1	0	1	0	0	0	0	17695	1500	52	0	984	0	ZCCHC4	4	25353254	Frame_Shift_Del	DEL	T	TCGA-KL-8342-01A-11D-2310-10		25353254	165801022	12	1479											
FGA	2243	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	155506781	155506781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctcatctgccattttataGctcttgctttcaaatgtgga	7	10	4	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	155506781	G	C	155506781	3	2	20	1	0	0	0	0	1	0	0	0	5879	962	34	5	852	5	FGA	4	155506781	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	130153527	155506781	35647495	13	1480											
GUCY1A3	2982	broad.mit.edu;mdanderson.org	37	chr4	156643251	156643251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttggagttaaaatgccccGttactgtctttttggaaaca	9	8	1	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	156643251	G	A	156643251	3	1	20	1	0	0	0	0	1	0	0	0	6952	1145	40	1	1819	1	GUCY1A3	4	156643251	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	1136470	156643251	34511025	14	1481											
HOMER1	9456	broad.mit.edu	37	chr5	78672018	78672018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttgttccgaatttctacTtccttcagaaacaaaagtgt	5	9	3	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	78672018	T	C	78672018	3	2	20	1	0	0	0	0	1	0	0	0	7336	1606	56	2	189	2	HOMER1	5	78672018	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		78672018	102243242	15	1482											
HARS2	23438	broad.mit.edu	37	chr5	140073223	140073223	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaagcacatcaagagaaAccaaattttattatcaagac	5	8	2	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	140073223	A	G	140073223	2	3	20	1	0	0	0	0	0	0	0	1	7018	40	2	2		2	HARS2	5	140073223	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	61401205	140073223	40842037	16	1483											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720439	140720439	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacggcgcgagccctgctggAcagagacgcgctcaagcaga	14	14	1	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	140720439	A	G	140720439	3	3	20	1	0	0	0	0	1	0	0	0	11633	275	10	2	1903	2	PCDHGA2	5	140720439	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	647216	140720439	40194821	17	1484											
UBLCP1	134510	bcgsc.ca	37	chr5	158696939	158696939	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctgcagaaaatgatgttAagcttggagctctcaaactg	9	8	1	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	158696939	A	G	158696939	3	3	20	1	0	0	0	0	1	0	0	0	16997	363	13	4	184	4	UBLCP1	5	158696939	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	17976500	158696939	22218321	18	1485											
HLA-DQB1	3119	mdanderson.org	37	chr6	32634331	32634331	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agcatcgccagcatcaaggtGacagttgctacccgaaggtc	11	12	1	1	rs1049058	byfrequency	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	32634331	G	C	32634331	2	2	20	1	0	0	0	0	0	0	0	1	7264	1277	45	5		5	HLA-DQB1	6	32634331	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10		32634331	138480736	19	1486			1	19		2	2	20	N	T_G	4.173479e-05
HLA-DQB1	3119	bcgsc.ca	37	chr6	32634350	32634350	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacagttgctacccgaaggTctccggggatccgcaaagcc	12	13	1	1	rs36222414		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	32634350	T	C	32634350	3	2	20	1	0	0	0	0	1	0	0	0	7264	1667	58	2	770	2	HLA-DQB1	6	32634350	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	19	32634350	138480717	20	1487			1	19		2	2	20	N	T_G	4.173479e-05
USP45	85015	ucsc.edu	37	chr6	99930673	99930673	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actttaggagaaagtggtccTttttcagtctccttcatgct	8	9	3	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	99930673	T	C	99930673	2	2	20	1	0	0	0	0	0	0	0	1	17182	1606	56	2		2	USP45	6	99930673	Silent	SNP	T	TCGA-KL-8342-01A-11D-2310-10	67296323	99930673	71184394	21	1488											
AHI1	54806	broad.mit.edu	37	chr6	135787070	135787070	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcaactgttctttcagttTctttcttattttcctcttaa	3	9	6	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	135787070	T	C	135787070	3	2	20	1	0	0	0	0	1	0	0	0	413	1792	62	4	3108	4	AHI1	6	135787070	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	35856397	135787070	35327997	22	1489											
PARK2	5071	broad.mit.edu	37	chr6	162394348	162394348	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttacctgacgtctgtgcaCgtaatgcaagtgatgttccg	10	11	1	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	162394348	C	A	162394348	2	1	20	1	0	0	0	0	0	0	0	1	11528	523	19	5		5	PARK2	6	162394348	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	26607278	162394348	8720719	23	1490											
PILRB	29990	broad.mit.edu;bcgsc.ca	37	chr7	99956366	99956366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggggtcactcaaccaaaaCacctctcagcctccatgggt	8	14	3	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	99956366	C	T	99956366	3	4	20	1	0	0	0	0	1	0	0	0	12006	478	17	4	124	4	PILRB	7	99956366	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		99956366	59182297	24	1491											
PRSS1	5644	mdanderson.org	37	chr7	142458409	142458409	+	Missense_Mutation	SNP	C	C	G													tcccatctccactccagttgCtgccccctttgatgatgatg					rs200665515		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	142458409	C	G	142458409	3	3	20	1	0	0	0	0	1	0	0	0	12703	797	28	5	50	5	PRSS1	7	142458409	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	42502043	142458409	16680254	25	1492	40	2									
PRSS1	5644	mdanderson.org	37	chr7	142458412	142458412	+	Missense_Mutation	SNP	C	C	T													catctccactccagttgctgCcccctttgatgatgatgaca					rs202003805		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	142458412	C	T	142458412	3	4	20	1	0	0	0	0	1	0	0	0	12703	739	26	3	53	3	PRSS1	7	142458412	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	3	142458412	16680251	26	1493	40	2									
PPP2R2A	5520	broad.mit.edu	37	chr8	26196504	26196504	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttcaacaggagcaggagGtaagtgtttaaagtttattg	11	4	2	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	26196504	G	T	26196504	5	4	20	1	0	0	0	0	0	0	1	0	12469	1275	44	5	232	5	PPP2R2A	8	26196504	Splice_Site	SNP	G	TCGA-KL-8342-01A-11D-2310-10		26196504	120167518	27	1494											
GDF6	392255	bcgsc.ca	37	chr8	97172838	97172838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggacgacgaggaggatgagAtggaagcctgctggaaaccg	17	8	0	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	97172838	A	G	97172838	3	3	20	1	0	0	0	0	1	0	0	0	6373	333	12	4	1292	4	GDF6	8	97172838	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	70976334	97172838	49191184	28	1495											
FAM120A	23196	broad.mit.edu	37	chr9	96233575	96233576	+	Frame_Shift_Ins	INS	-	-	A													taaaactgagccggaacgggINSaaaagtctcaccacaagcca					novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	96233576	-	A	96233575	7	5	20	1	0	1	1	0	0	0	0	0	5458	1161	41	0	633	0	FAM120A	9	96233575	Frame_Shift_Ins	INS	-	TCGA-KL-8342-01A-11D-2310-10		96233575	44979856	29	1496											
ZCCHC24	219654	ucsc.edu;bcgsc.ca	37	chr10	81205166	81205166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctggtacaccgaggcggCgctcgtgtcgatggccgaca	17	12	0	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	81205166	C	T	81205166	3	4	20	1	0	0	0	0	1	0	0	0	17693	768	27	1	710	1	ZCCHC24	10	81205166	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		81205166	54329581	30	1497											
LDB3	11155	broad.mit.edu	37	chr10	88476140	88476140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	attacagtcccactccctacAccccctcccctgcccctgcc	3	24	0	0	rs143163993	alternate_allele	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	88476140	A	C	88476140	3	2	20	1	0	0	0	0	1	0	0	0	8759	159	6	5	1658	5	LDB3	10	88476140	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	7270974	88476140	47058607	31	1498											
MUC6	4588	mdanderson.org	37	chr11	1016684	1016684	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtgcctgttggcgttgaGtggatggaggcagaagtggc	19	6	0	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	1016684	G	A	1016684	2	1	20	1	0	0	0	0	0	0	0	1	10058	1020	36	4		4	MUC6	11	1016684	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10		1016684	133989832	32	1499											
MUC5B	727897	mdanderson.org	37	chr11	1258240	1258241	+	Silent	DNP	CA	CA	TG													ccggtccgtggtgggggacgCactggagtttgggaacagct					rs79773885		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		TG	1258241	CA	TG	1258240	2	4	20	1	0	0	0	0	0	0	0	1	10057	710	25	4		4	MUC5B	11	1258240	Silent	DNP	CA	TCGA-KL-8342-01A-11D-2310-10	241556	1258240	133748276	33	1500											
DPAGT1	1798	mdanderson.org	37	chr11	118967931	118967931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagcaagttgatgagggtcAtgttgttacattcagtgaat	12	4	2	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	118967931	A	C	118967931	3	2	20	1	0	0	0	0	1	0	0	0	4747	217	8	5	152	5	DPAGT1	11	118967931	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	117709691	118967931	16038585	34	1501											
DIP2B	57609	broad.mit.edu	37	chr12	51072520	51072520	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcagatgacccctgtgaaAggagagcctttaggagtcat	13	9	1	4	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	51072520	A	G	51072520	2	3	20	1	0	0	0	0	0	0	0	1	4565	69	3	2		2	DIP2B	12	51072520	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10		51072520	82779375	35	1502											
ERBB3	2065	hgsc.bcm.edu;mdanderson.org	37	chr12	56491706	56491706	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcctgatgataagcagctGctatacagtgaggccaaggt	11	10	0	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	56491706	G	A	56491706	2	1	20	1	0	0	0	0	0	0	0	1	5247	1306	46	4		4	ERBB3	12	56491706	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10	5419186	56491706	77360189	36	1503											
GNS	2799	broad.mit.edu	37	chr12	65115476	65115476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttcacatacacagtctgGgaagcattgctgtagggata	10	8	3	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	65115476	G	A	65115476	3	1	20	1	0	0	0	0	1	0	0	0	6606	1232	43	3	352	3	GNS	12	65115476	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	8623770	65115476	68736419	37	1504											
PHLDA1	22822	hgsc.bcm.edu	37	chr12	76424940	76424940	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgttgCtgctgctgctgctggtgttg	15	10	0	0	rs80344196		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	76424940	C	T	76424940	2	4	20	1	0	0	0	0	0	0	0	1	11928	796	28	4		4	PHLDA1	12	76424940	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	11309464	76424940	57426955	38	1505											
NAA30	122830	broad.mit.edu	37	chr14	57863498	57863498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggaggagtgtgtaggtgCcatcgtttgcaagttggata	17	4	0	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	57863498	C	T	57863498	3	4	20	1	0	0	0	0	1	0	0	0	10200	739	26	3	806	3	NAA30	14	57863498	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		57863498	49486042	39	1506											
TIMM9	26520	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	58878663	58878663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctggtatttgtgcagccaTattcttctggtacctttatt	7	8	3	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	58878663	T	C	58878663	3	2	20	1	0	0	0	0	1	0	0	0	16020	1406	49	4	280	4	TIMM9	14	58878663	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	1015165	58878663	48470877	40	1507											
FMN1	342184	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	33359287	33359287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttggaatgacttctctcCagagacttcttttttagaag	8	7	2	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	33359287	C	T	33359287	3	4	20	1	0	0	0	0	1	0	0	0	5998	603	21	4	2859	4	FMN1	15	33359287	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		33359287	69172105	41	1508											
WDR72	256764	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	53997272	53997272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccatcttcacagccacAtattagtttatcaagacttg	5	11	3	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	53997272	A	G	53997272	3	3	20	1	0	0	0	0	1	0	0	0	17428	217	8	4	2087	4	WDR72	15	53997272	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	20637985	53997272	48534120	42	1509											
VPS13C	54832	broad.mit.edu	37	chr15	62243167	62243167	+	Frame_Shift_Del	DEL	G	G	-													tgtcagtaacattttcagaaGgggttcgtcagtcacattag					novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		-	62243167	G	-	62243167	7	5	20	1	0	1	0	1	0	0	0	0	17297	1000	35	0	6960	0	VPS13C	15	62243167	Frame_Shift_Del	DEL	G	TCGA-KL-8342-01A-11D-2310-10	8245895	62243167	40288225	43	1510											
C15orf39	56905	broad.mit.edu	37	chr15	75503149	75503149	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcccactgtggccagaggtGagccagagagcctagccctg	14	13	0	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	75503149	G	A	75503149	3	1	20	1	0	0	0	0	1	0	0	0	1805	1291	45	4	2842	4	C15orf39	15	75503149	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	13259982	75503149	27028243	44	1511											
ADAMTS7	11173	hgsc.bcm.edu	37	chr15	79058942	79058944	+	In_Frame_Del	DEL	GCA	GCA	-													cggggctacccgtggagggcGcagcaggatggctgtgtggt					novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		-	79058944	GCA	-	79058942	7	5	20	1	0	1	0	1	0	0	0	0	271	1087	38	0	1773	0	ADAMTS7	15	79058942	In_Frame_Del	DEL	GCA	TCGA-KL-8342-01A-11D-2310-10	3555793	79058942	23472450	45	1512											
ADAMTS17	170691	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	100672306	100672306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacgggctccagtctccgtCcacatgctccgggatgggcg	13	16	1	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	100672306	C	T	100672306	3	4	20	1	0	0	0	0	1	0	0	0	262	855	30	3	1704	3	ADAMTS17	15	100672306	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	21613364	100672306	1859086	46	1513											
TSC2	7249	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	2129290	2129290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttctaggtctcctgtgggcGagttcctcctagcgggtggc	14	12	2	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	2129290	G	A	2129290	3	1	20	1	0	0	0	0	1	0	0	0	16711	1059	37	1	3251	1	TSC2	16	2129290	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10		2129290	88225463	47	1514											
CPPED1	55313	mdanderson.org	37	chr16	12875238	12875238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggatgaagtagaatggGcctttccattcgctttcctt	9	11	0	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	12875238	G	A	12875238	2	1	20	1	0	0	0	0	0	0	0	1	3851	1190	42	3		3	CPPED1	16	12875238	Silent	SNP	G	TCGA-KL-8342-01A-11D-2310-10	10745948	12875238	77479515	48	1515											
ERCC4	2072	broad.mit.edu	37	chr16	14041897	14041897	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aacggcggagttgtttgaggAgctgaaacaaagcaagccac	13	8	0	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	14041897	A	T	14041897	3	4	20	1	0	0	0	0	1	0	0	0	5254	304	11	5	2486	5	ERCC4	16	14041897	Missense_Mutation	SNP	A	TCGA-KL-8342-01A-11D-2310-10	1166659	14041897	76312856	49	1516											
ERN2	10595	broad.mit.edu	37	chr16	23716452	23716452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaggcccatcccgcaggaCgccaggtggctcatgtctgc	13	15	2	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	23716452	C	T	23716452	2	4	20	1	0	0	0	0	0	0	0	1	5277	523	19	1		1	ERN2	16	23716452	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	9674555	23716452	66638301	50	1517											
SLC9A5	6553	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	67293560	67293560	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaaacttctgtcaccaacCtgctgtgagtccttgagccc	8	14	2	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	67293560	C	A	67293560	3	1	20	1	0	0	0	0	1	0	0	0	14815	680	24	5	1753	5	SLC9A5	16	67293560	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	43577108	67293560	23061193	51	1518											
HYDIN	54768	mdanderson.org	37	chr16	71163579	71163579	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgttattgaagaacagCttgctgtctccctgcaccag	8	11	1	2	rs929311	bycluster;byfrequency;by2hit2allele	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	71163579	C	T	71163579	2	4	20	1	0	0	0	0	0	0	0	1	7528	796	28	4		4	HYDIN	16	71163579	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	3870019	71163579	19191174	52	1519											
SOCS7	30837	ucsc.edu	37	chr17	36552111	36552111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttcacagacctctgatcTcttatatccgaaagttctac	4	11	4	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	36552111	T	C	36552111	3	2	20	1	0	0	0	0	1	0	0	0	15017	1551	54	2	1670	2	SOCS7	17	36552111	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		36552111	44643099	53	1520											
KRT17	3872	mdanderson.org	37	chr17	39775939	39775939	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcacctgacgggtggtcacCgctgcaggagaagcaggcaa	15	12	1	2	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	39775939	C	T	39775939	2	4	20	1	0	0	0	0	0	0	0	1	8515	666	23	1		1	KRT17	17	39775939	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10	3223828	39775939	41419271	54	1521											
BECN1	8678	broad.mit.edu	37	chr17	40970314	40970314	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccactatcttgcggttcTtttccacgtcttccagctcc	6	16	3	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	40970314	T	C	40970314	3	2	20	1	0	0	0	0	1	0	0	0	1400	1609	56	2	768	2	BECN1	17	40970314	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	1194375	40970314	40224896	55	1522											
PLEKHM1	9842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	43531447	43531447	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaccagctcaaagcgcccatCactatgggctggccccacag	10	16	2	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	43531447	C	G	43531447	3	3	20	1	0	0	0	0	1	0	0	0	12160	826	29	5	1423	5	PLEKHM1	17	43531447	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10	2561133	43531447	37663763	56	1523											
MADCAM1	8174	mdanderson.org	37	chr19	501786	501786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccgacaccacctcccCggagcctcccgacaagacct	7	22	0	1	rs77264553	byfrequency	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	501786	C	A	501786	3	1	20	1	0	0	0	0	1	0	0	0	9224	652	23	5	799	5	MADCAM1	19	501786	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		501786	58627197	57	1524											
COL5A3	50509	broad.mit.edu	37	chr19	10091506	10091506	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcctggttgccctgtggcAcccggttgccccctctctcc	12	18	1	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	10091506	A	C	10091506	2	2	20	1	0	0	0	0	0	0	0	1	3727	146	6	5		5	COL5A3	19	10091506	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	9589720	10091506	49037477	58	1525											
LRFN3	79414	broad.mit.edu	37	chr19	36430411	36430412	+	Frame_Shift_Ins	INS	-	-	C													cagccacacccagcccatgtINSccccgccgctgccgctgcca					novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	36430412	-	C	36430411	7	5	20	1	0	1	1	0	0	0	0	0	9011	1673	58	0	86	0	LRFN3	19	36430411	Frame_Shift_Ins	INS	-	TCGA-KL-8342-01A-11D-2310-10	26338905	36430411	22698572	59	1526											
FCGBP	8857	mdanderson.org	37	chr19	40376900	40376900	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcgctggggatacagcccGcgctccccggcgggcaggtg	17	14	0	0	rs2542321	bycluster;byfrequency	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	40376900	G	T	40376900	3	4	20	1	0	0	0	0	1	0	0	0	5827	1087	38	5	4747	5	FCGBP	19	40376900	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	3946489	40376900	18752083	60	1527											
DMWD	1762	broad.mit.edu	37	chr19	46289153	46289154	+	Frame_Shift_Ins	INS	-	-	G													gtgctccttctctgccccccINSggtcccgccgctcctgcagt					novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	46289154	-	G	46289153	7	5	20	1	0	1	1	0	0	0	0	0	4630	652	23	0	435	0	DMWD	19	46289153	Frame_Shift_Ins	INS	-	TCGA-KL-8342-01A-11D-2310-10	5912253	46289153	12839830	61	1528											
ATP5E	514	broad.mit.edu	37	chr20	57605434	57605434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catttgctttgaattctgtcTtcagtgcatctctcactgct	6	11	5	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	57605434	T	C	57605434	3	2	20	1	0	0	0	0	1	0	0	0	1155	1609	56	2	76	2	ATP5E	20	57605434	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10		57605434	5420086	62	1529											
TMPRSS15	5651	broad.mit.edu	37	chr21	19751610	19751610	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaactgacctggagttgcCagatgactggtggttgttag	13	6	0	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	19751610	C	T	19751610	2	4	20	1	0	0	0	0	0	0	0	1	16350	581	21	4		4	TMPRSS15	21	19751610	Silent	SNP	C	TCGA-KL-8342-01A-11D-2310-10		19751610	28378285	63	1530											
CECR2	27443	broad.mit.edu	37	chr22	18029228	18029228	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtggaataagaggaccTttccaggaaatgtacagacc	11	7	0	3	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		C	18029228	T	C	18029228	2	2	20	1	0	0	0	0	0	0	0	1	3235	1596	56	2		2	CECR2	22	18029228	Silent	SNP	T	TCGA-KL-8342-01A-11D-2310-10		18029228	33275338	64	1531											
ARFGAP3	26286	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	43231465	43231465	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtacttggcattggtgtcaTtggtggaacacccatgttga	12	7	1	1	rs142981529	byfrequency;alternate_allele	TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	43231465	T	A	43231465	3	1	20	1	0	0	0	0	1	0	0	0	853	1493	52	5	1306	5	ARFGAP3	22	43231465	Missense_Mutation	SNP	T	TCGA-KL-8342-01A-11D-2310-10	25202237	43231465	8073101	65	1532											
MAGEB6	158809	bcgsc.ca	37	chrX	26212262	26212262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaagcacctcccgtgatgCctccgttcctcaggagtctc	8	17	2	1	rs4272533		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	26212262	C	T	26212262	3	4	20	1	0	0	0	0	1	0	0	0	9256	739	26	3	301	3	MAGEB6	23	26212262	Missense_Mutation	SNP	C	TCGA-KL-8342-01A-11D-2310-10		26212262	129058298	66	1533											
BCOR	54880	broad.mit.edu	37	chrX	39913558	39913558	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccactggcgtcatcatcAttgcgaccctggaggtcatt	11	12	4	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		G	39913558	A	G	39913558	2	3	20	1	0	0	0	0	0	0	0	1	1390	214	8	4		4	BCOR	23	39913558	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	13701296	39913558	115357002	67	1534											
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	129281737	129281737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccttaccctggccccaGgatcccgagcccggatggat	11	16	0	0	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		A	129281737	G	A	129281737	3	1	20	1	0	0	0	0	1	0	0	0	426	1000	35	4	1441	4	AIFM1	23	129281737	Missense_Mutation	SNP	G	TCGA-KL-8342-01A-11D-2310-10	89368179	129281737	25988823	68	1535											
MAMLD1	10046	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	149638778	149638778	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caccagctgaaggcgttggcAgccagcaagcaggggtctgc	15	12	1	1	novel		TCGA-KL-8342-01A-11D-2310-10	TCGA-KL-8342-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f38fc6ac-2af8-4d89-a514-4e2c5fdf08de	0d9307db-aee2-48b3-a11e-d570b626f1a0		T	149638778	A	T	149638778	2	4	20	1	0	0	0	0	0	0	0	1	9285	175	7	5		5	MAMLD1	23	149638778	Silent	SNP	A	TCGA-KL-8342-01A-11D-2310-10	20357041	149638778	5631782	69	1536											
RBMXL1	494115	mdanderson.org	37	chr1	89448940	89448940	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccttcgaggtggacctccAtaactatctcttccacgtga	7	14	1	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	89448940	A	G	89448940	2	3	21	1	0	0	0	0	0	0	0	1	13245	224	8	4		4	RBMXL1	1	89448940	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10		89448940	159801681	1	1537											
CELSR2	1952	mdanderson.org	37	chr1	109801121	109801121	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaccgatgagatgctcacCcacagcatcacgctgcgcct	8	16	3	1	rs684138	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	109801121	C	T	109801121	2	4	21	1	0	0	0	0	0	0	0	1	3251	610	22	3		3	CELSR2	1	109801121	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	20352181	109801121	139449500	2	1538											
AMPD2	271	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	110168780	110168780	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacccctcttgcctctAggctggagccagacatcctg	8	16	3	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	110168780	A	T	110168780	5	4	21	1	0	0	0	0	0	0	1	0	586	434	15	5	569	5	AMPD2	1	110168780	Splice_Site	SNP	A	TCGA-KL-8343-01A-11D-2310-10	367659	110168780	139081841	3	1539											
CHIA	27159	mdanderson.org;bcgsc.ca	37	chr1	111863044	111863044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagcagaactgccaggccGggcttgtcttcgacaccagc	11	15	1	1	rs142653250	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	111863044	G	A	111863044	3	1	21	1	0	0	0	0	1	0	0	0	3371	1116	39	1	1429	1	CHIA	1	111863044	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	1694264	111863044	137387577	4	1540											
NBPF10	100132406	mdanderson.org	37	chr1	145299805	145299805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtccagcgagaaggcagAgatgaacattctagaaatca	10	7	2	4	rs61814629		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	145299805	A	C	145299805	3	2	21	1	0	0	0	0	1	0	0	0	10271	304	11	5	876	5	NBPF10	1	145299805	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	33436761	145299805	103950816	5	1541											
PRG4	10216	broad.mit.edu	37	chr1	186276256	186276257	+	In_Frame_Ins	INS	-	-	CCA													cactcccaaggagcctgcacINSccaccaccaaggagcctgca					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		CCA	186276257	-	CCA	186276256	7	5	21	1	0	1	1	0	0	0	0	0	12570	507	18	0	1427	0	PRG4	1	186276256	In_Frame_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	40976451	186276256	62974365	6	1542											
TPR	7175	bcgsc.ca	37	chr1	186283126	186283126	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attaatatttcctctgtttaTtcctcctctccctcccattg	2	14	2	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	186283126	T	C	186283126	3	2	21	1	0	0	0	0	1	0	0	0	16521	1493	52	4	26	4	TPR	1	186283126	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	6870	186283126	62967495	7	1543											
CHIT1	1118	hgsc.bcm.edu;ucsc.edu	37	chr1	203188924	203188924	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtaggtaggcatgccaagGatcagcttgctggcaggggt	16	9	1	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	203188924	G	T	203188924	2	4	21	1	0	0	0	0	0	0	0	1	3375	1164	41	5		5	CHIT1	1	203188924	Silent	SNP	G	TCGA-KL-8343-01A-11D-2310-10	16905798	203188924	46061697	8	1544											
RD3	343035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	211654675	211654675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcagctccatcataagcGtctccagcaccatctcagca	6	17	4	0	rs61740157	bycluster;byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	211654675	G	A	211654675	3	1	21	1	0	0	0	0	1	0	0	0	13279	1145	40	1	512	1	RD3	1	211654675	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	8465751	211654675	37595946	9	1545											
LYST	1130	ucsc.edu	37	chr1	235964396	235964396	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcagactttaagtctacCcctgaaaagagaaaagcgaa	8	8	2	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	235964396	C	T	235964396	2	4	21	1	0	0	0	0	0	0	0	1	9201	637	22	3		3	LYST	1	235964396	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	24309721	235964396	13286225	10	1546											
SDC1	6382	broad.mit.edu	37	chr2	20402642	20402642	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatgcggtacagcatgAaacccaccaggcacacagca	8	14	2	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	20402642	A	G	20402642	3	3	21	1	0	0	0	0	1	0	0	0	14048	246	9	4	118	4	SDC1	2	20402642	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		20402642	222796731	11	1547											
TRIM54	57159	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	27527838	27527838	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgtatcagagtgagctcagCgatggcatcgcgatgctggt	15	8	2	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	27527838	C	A	27527838	3	1	21	1	0	0	0	0	1	0	0	0	16633	767	27	5	669	5	TRIM54	2	27527838	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	7125196	27527838	215671535	12	1548											
EIF2B4	8890	mdanderson.org	37	chr2	27592316	27592316	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatacagcagagccagtcTctggttctgcccccttttct	8	14	3	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	27592316	T	C	27592316	3	2	21	1	0	0	0	0	1	0	0	0	5040	1551	54	2	1439	2	EIF2B4	2	27592316	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	64478	27592316	215607057	13	1549											
IMMT	10989	bcgsc.ca	37	chr2	86408441	86408441	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagagctgcctgaagtagAgtatctgcggcatggtcgca	13	11	1	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	86408441	A	G	86408441	3	3	21	1	0	0	0	0	1	0	0	0	7779	304	11	2	2232	2	IMMT	2	86408441	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	58816125	86408441	156790932	14	1550											
IL18RAP	8807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	103068475	103068475	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggagaggcttaaaatcagTtcctcccaattctaggttct	8	9	3	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	103068475	T	A	103068475	3	1	21	1	0	0	0	0	1	0	0	0	7709	1725	60	5	1672	5	IL18RAP	2	103068475	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	16660034	103068475	140130898	15	1551											
SAP130	79595	broad.mit.edu;bcgsc.ca	37	chr2	128747329	128747329	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggatcccttgaatatgtCgagcatgcgatgcatccact	10	11	0	1	rs199755359	alternate_allele	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	128747329	C	A	128747329	3	1	21	1	0	0	0	0	1	0	0	0	13926	884	31	5	1620	5	SAP130	2	128747329	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	25678854	128747329	114452044	16	1552											
HSPD1	3329	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	198358117	198358117	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaccaaaggcttacggTgagcattggcaatttcaaga	10	7	1	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	198358117	T	A	198358117	3	1	21	1	0	0	0	0	1	0	0	0	7489	1696	59	5	945	5	HSPD1	2	198358117	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	69610788	198358117	44841256	17	1553											
ROBO2	6092	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	77645803	77645803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttctcaatgctggtgatcCcagctatccatggcttgctg	9	12	2	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	77645803	C	T	77645803	3	4	21	1	0	0	0	0	1	0	0	0	13609	623	22	3	2832	3	ROBO2	3	77645803	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		77645803	120376627	18	1554											
POU1F1	5449	bcgsc.ca	37	chr3	87311219	87311219	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcagagacacaatttagtAcctcctacttgctcagcttc	5	13	2	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	87311219	A	G	87311219	5	3	21	1	0	0	0	0	0	0	1	0	12349	405	14	2	281	2	POU1F1	3	87311219	Splice_Site	SNP	A	TCGA-KL-8343-01A-11D-2310-10	9665416	87311219	110711211	19	1555											
ZBTB11	27107	broad.mit.edu	37	chr3	101395694	101395694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgccctcggtgcccggcGcatacggctcgcgctcgttc	12	17	0	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	101395694	G	A	101395694	3	1	21	1	0	0	0	0	1	0	0	0	17629	1087	38	1	3140	1	ZBTB11	3	101395694	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	14084475	101395694	96626736	20	1556											
COL6A5	256076	broad.mit.edu	37	chr3	130114173	130114173	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggttttgggcataggagatGtttataaggaacatctcctg	12	5	1	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	130114173	G	T	130114173	3	4	21	1	0	0	0	0	1	0	0	0	3731	1377	48	5	3459	5	COL6A5	3	130114173	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	28718479	130114173	67908257	21	1557											
TOPBP1	11073	broad.mit.edu	37	chr3	133368474	133368474	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactttgctcccactacatgAggcctacaaaaatagcacat	5	13	0	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	133368474	A	G	133368474	2	3	21	1	0	0	0	0	0	0	0	1	16474	291	11	2		2	TOPBP1	3	133368474	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10	3254301	133368474	64653956	22	1558											
MUC4	4585	broad.mit.edu	37	chr3	195512280	195512281	+	Frame_Shift_Ins	INS	-	-	G													gcgtggtgtcacctgtggatINSactgaggaaaggctggtgac					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	195512281	-	G	195512280	7	5	21	1	0	1	1	0	0	0	0	0	10056	1393	49	0		0	MUC4	3	195512280	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	62143806	195512280	2510150	23	1559											
CRIPAK	285464	bcgsc.ca	37	chr4	1388697	1388697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgctcacacgtgcccatgCggagtgcccgcctgctcaca	10	18	2	0	rs113316888	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	1388697	C	T	1388697	3	4	21	1	0	0	0	0	1	0	0	0	3906	768	27	1	400	1	CRIPAK	4	1388697	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		1388697	189765579	24	1560											
UGT8	7368	hgsc.bcm.edu;ucsc.edu	37	chr4	115544546	115544546	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcctgctgaagtgggtgcTcctgctccattagcatacgt	10	11	0	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	115544546	T	G	115544546	2	3	21	1	0	0	0	0	0	0	0	1	17071	1538	54	5		5	UGT8	4	115544546	Silent	SNP	T	TCGA-KL-8343-01A-11D-2310-10	114155849	115544546	75609730	25	1561											
TKTL2	84076	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	164394497	164394497	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccattccacatgcagtaccTaatccctgacctagggaccc	7	16	0	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	164394497	T	A	164394497	3	1	21	1	0	0	0	0	1	0	0	0	16040	1519	53	5	1494	5	TKTL2	4	164394497	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	48849951	164394497	26759779	26	1562											
NIPBL	25836	broad.mit.edu	37	chr5	36985238	36985238	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaaacagaagaacttaaAcagaatgagagcagaacaac	7	9	0	5	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	36985238	A	G	36985238	2	3	21	1	0	0	0	0	0	0	0	1	10507	40	2	2		2	NIPBL	5	36985238	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10		36985238	143930022	27	1563											
DAB2	1601	broad.mit.edu	37	chr5	39376947	39376947	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catttctttcacatccttgaTctctttatccccaagtgggt	5	12	3	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	39376947	T	C	39376947	3	2	21	1	0	0	0	0	1	0	0	0	4250	1435	50	4	382	4	DAB2	5	39376947	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	2391709	39376947	141538313	28	1564											
MSH3	4437	broad.mit.edu;mdanderson.org	37	chr5	79968625	79968625	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagacaacagaagttcactCttttcccggaaattgactgc	9	10	2	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	79968625	C	G	79968625	2	3	21	1	0	0	0	0	0	0	0	1	9949	900	32	5		5	MSH3	5	79968625	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	40591678	79968625	100946635	29	1565											
FLT4	2324	broad.mit.edu	37	chr5	180048849	180048850	+	Frame_Shift_Ins	INS	-	-	GC													agctcaggagcaccggctggINSccctctagtagctcctcgga					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		GC	180048850	-	GC	180048849	7	5	21	1	0	1	1	0	0	0	0	0	5993	1190	42	0	2458	0	FLT4	5	180048849	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	100080224	180048849	866411	30	1566											
RING1	6015	ucsc.edu	37	chr6	33179664	33179664	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgatgggtgtggcggggAgggtgggggtgccggaggag	25	5	0	1	rs73741545		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	33179664	A	G	33179664	3	3	21	1	0	0	0	0	1	0	0	0	13469	304	11	2	1022	2	RING1	6	33179664	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		33179664	137935403	31	1567											
CUL7	9820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	43020113	43020113	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagcacgtggacagtgtgAagtagaggagcaggagggat	18	5	0	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	43020113	A	G	43020113	2	3	21	1	0	0	0	0	0	0	0	1	4091	233	9	4		4	CUL7	6	43020113	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10	9840449	43020113	128094954	32	1568											
HSP90AB1	3326	mdanderson.org	37	chr6	44221265	44221265	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcagaggaacccaatgCtgcagttcctgatgagatcc	12	11	0	3	rs200104342	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	44221265	C	A	44221265	3	1	21	1	0	0	0	0	1	0	0	0	7462	797	28	5	2147	5	HSP90AB1	6	44221265	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	1201152	44221265	126893802	33	1569											
CD109	135228	bcgsc.ca	37	chr6	74468723	74468723	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatattgttctatgaattctAagcatttaaatggtaccatc	5	6	2	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	74468723	A	G	74468723	3	3	21	1	0	0	0	0	1	0	0	0	2992	363	13	4	756	4	CD109	6	74468723	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	30247458	74468723	96646344	34	1570											
AEBP1	165	mdanderson.org	37	chr7	44147485	44147485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcgggtctggccagagCcccctgaggagaaggccccg	16	15	1	3	rs2537188	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	44147485	C	A	44147485	3	1	21	1	0	0	0	0	1	0	0	0	349	739	26	5	835	5	AEBP1	7	44147485	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		44147485	114991178	35	1571											
NAMPT	10135	mdanderson.org	37	chr7	105903965	105903965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacgcattataaatgtcaTagctatcgctgaccacagat	6	11	1	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	105903965	T	C	105903965	3	2	21	1	0	0	0	0	1	0	0	0	10227	1406	49	4	653	4	NAMPT	7	105903965	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	61756480	105903965	53234698	36	1572											
BCAP29	55973	mdanderson.org	37	chr7	107253813	107253813	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgatgtgatggaaatgaAgatgcagtcagagagacttt	12	3	1	6	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	107253813	A	G	107253813	3	3	21	1	0	0	0	0	1	0	0	0	1350	72	3	2	648	2	BCAP29	7	107253813	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	1349848	107253813	51884850	37	1573											
PAX4	5078	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	127255519	127255519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagccgcacaatctgctgcCgggtatccagaggcaggggc	14	13	1	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	127255519	C	T	127255519	3	4	21	1	0	0	0	0	1	0	0	0	11560	652	23	1	1011	1	PAX4	7	127255519	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	20001706	127255519	31883144	38	1574											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	149486388	149486388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctatccgtgcccccaggGcttgctggcctgtgccgatg	14	14	0	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	149486388	G	T	149486388	3	4	21	1	0	0	0	0	1	0	0	0	15289	1203	42	5	4478	5	SSPO	7	149486388	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	22230869	149486388	9652275	39	1575											
ZFHX4	79776	broad.mit.edu;mdanderson.org	37	chr8	77763344	77763344	+	Missense_Mutation	SNP	A	A	G													ttctgaccgtcatgtctacaAgtatcgctgtaaccattgta					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	77763344	A	G	77763344	3	3	21	1	0	0	0	0	1	0	0	0	17740	72	3	2	4221	2	ZFHX4	8	77763344	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		77763344	68600678	40	1576	41	2									
ZFHX4	79776	mdanderson.org;bcgsc.ca	37	chr8	77763346	77763346	+	Missense_Mutation	SNP	T	T	C													ctgaccgtcatgtctacaagTatcgctgtaaccattgtagc					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	77763346	T	C	77763346	3	2	21	1	0	0	0	0	1	0	0	0	17740	1638	57	2	4223	2	ZFHX4	8	77763346	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	2	77763346	68600676	41	1577	41	2									
PABPC1	26986	mdanderson.org	37	chr8	101730065	101730065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttcagctgcttcctgcgTctcaaagtgtacaaatccat	6	12	3	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	101730065	T	C	101730065	3	2	21	1	0	0	0	0	1	0	0	0	11442	1667	58	2	1519	2	PABPC1	8	101730065	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	23966719	101730065	44633957	42	1578											
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Frame_Shift_Del	DEL	G	G	-													cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					rs142782873	by1000genomes	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	120220776	G	-	120220776	7	5	21	1	0	1	0	1	0	0	0	0	9277	1116	39	0	67	0	MAL2	8	120220776	Frame_Shift_Del	DEL	G	TCGA-KL-8343-01A-11D-2310-10	18490711	120220776	26143246	43	1579											
TIGD5	84948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	144680424	144680424	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actcagcgcaagaagatgcgGctggccaacgaggaggagat	15	9	1	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	144680424	G	T	144680424	2	4	21	1	0	0	0	0	0	0	0	1	16003	1190	42	5		5	TIGD5	8	144680424	Silent	SNP	G	TCGA-KL-8343-01A-11D-2310-10	24459648	144680424	1683598	44	1580											
FGD3	89846	ucsc.edu	37	chr9	95792199	95792199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taagaccagacgtgacaaggAgaagcagagctgtaagagct	13	7	0	6	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	95792199	A	G	95792199	3	3	21	1	0	0	0	0	1	0	0	0	5883	304	11	2	1651	2	FGD3	9	95792199	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		95792199	45421232	45	1581											
PFKFB3	5209	ucsc.edu	37	chr10	6261653	6261653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcgaccccgacaaatgcgAcaggtgattcccgtggctgg	12	14	0	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	6261653	A	G	6261653	3	3	21	1	0	0	0	0	1	0	0	0	11842	275	10	2	666	2	PFKFB3	10	6261653	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		6261653	129273094	46	1582											
CHST3	9469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	73767938	73767938	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccgctgcagaaggcccgCgagatgtaccgcttcgccgg	16	14	0	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	73767938	C	T	73767938	2	4	21	1	0	0	0	0	0	0	0	1	3434	755	27	1		1	CHST3	10	73767938	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	67506285	73767938	61766809	47	1583											
KIF11	3832	ucsc.edu	37	chr10	94399586	94399586	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaatctttggacagagagAttctgtgctttggaggaaaa	12	4	2	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	94399586	A	G	94399586	2	3	21	1	0	0	0	0	0	0	0	1	8333	330	12	4		4	KIF11	10	94399586	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10	20631648	94399586	41135161	48	1584											
NLRP6	171389	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	281811	281811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaagaagagcctggggaagCggctccaggccagcctgggt	17	10	0	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	281811	C	T	281811	3	4	21	1	0	0	0	0	1	0	0	0	10560	759	27	1	2091	1	NLRP6	11	281811	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		281811	134724705	49	1585											
DEAF1	10522	broad.mit.edu	37	chr11	694933	694934	+	Frame_Shift_Ins	INS	-	-	AG													tccctgctcagcaccggctcINSctccgcctcgcctcctgccg					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		AG	694934	-	AG	694933	7	5	21	1	0	1	1	0	0	0	0	0	4412	864	30	0	1630	0	DEAF1	11	694933	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	413122	694933	134311583	50	1586											
CTSD	1509	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	1774767	1774767	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcggcgaagcccaccctgTtgttgtcacggtcaaacaca	9	15	2	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	1774767	T	C	1774767	3	2	21	1	0	0	0	0	1	0	0	0	4063	1725	60	2	37	2	CTSD	11	1774767	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	1079834	1774767	133231749	51	1587											
MICALCL	84953	broad.mit.edu	37	chr11	12315174	12315175	+	Frame_Shift_Ins	INS	-	-	G													tcctcccaccccaaactttcINSggaggcgagccgtagcccaa					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	12315175	-	G	12315174	7	5	21	1	0	1	1	0	0	0	0	0	9649	875	31	0	202	0	MICALCL	11	12315174	Frame_Shift_Ins	INS	-	TCGA-KL-8343-01A-11D-2310-10	10540407	12315174	122691342	52	1588											
RCN1	5954	broad.mit.edu;hgsc.bcm.edu	37	chr11	32118784	32118784	+	Frame_Shift_Del	DEL	T	T	-													gggtgcagaaaagatacatcTttgataatgtcgccaaagtc					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	32118784	T	-	32118784	7	5	21	1	0	1	0	1	0	0	0	0	13271	1609	56	0	355	0	RCN1	11	32118784	Frame_Shift_Del	DEL	T	TCGA-KL-8343-01A-11D-2310-10	19803610	32118784	102887732	53	1589	42	2									
RCN1	5954	bcgsc.ca	37	chr11	32118785	32118785	+	Frame_Shift_Del	DEL	T	T	-													ggtgcagaaaagatacatctTtgataatgtcgccaaagtct					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	32118785	T	-	32118785	7	5	21	1	0	1	0	1	0	0	0	0	13271	1841	64	0	356	0	RCN1	11	32118785	Frame_Shift_Del	DEL	T	TCGA-KL-8343-01A-11D-2310-10	1	32118785	102887731	54	1590	42	2									
SLC25A45	283130	mdanderson.org;bcgsc.ca	37	chr11	65144406	65144406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcctcggaacagcccccGgggcccctcctcccggaaga	12	19	0	1	rs34377244		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	65144406	G	A	65144406	3	1	21	1	0	0	0	0	1	0	0	0	14608	1115	39	1	393	1	SLC25A45	11	65144406	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	33025621	65144406	69862110	55	1591											
CHRDL2	25884	broad.mit.edu;hgsc.bcm.edu	37	chr11	74408313	74408316	+	Frame_Shift_Del	DEL	CTTT	CTTT	-													ctggaagtcttgcttcctgaCtttcttgatctgagtcaagt					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	CTTT	CTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	74408316	CTTT	-	74408313	7	5	21	1	0	1	0	1	0	0	0	0	3403	565	20	0	158	0	CHRDL2	11	74408313	Frame_Shift_Del	DEL	CTTT	TCGA-KL-8343-01A-11D-2310-10	9263907	74408313	60598203	56	1592	43	2									
CHRDL2	25884	bcgsc.ca	37	chr11	74408314	74408317	+	Frame_Shift_Del	DEL	CTTT	CTTT	-													tggaagtcttgcttcctgacTttcttgatctgagtcaagtg					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	CTTT	CTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	74408317	CTTT	-	74408314	7	5	21	1	0	1	0	1	0	0	0	0	3403	1609	56	0	159	0	CHRDL2	11	74408314	Frame_Shift_Del	DEL	CTTT	TCGA-KL-8343-01A-11D-2310-10	1	74408314	60598202	57	1593	43	2									
FOLH1B	219595	broad.mit.edu	37	chr11	89420569	89420569	+	Frame_Shift_Del	DEL	A	A	-													ctctttatgaaagttggactAaaaaaagtccttccccagag					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	89420569	A	-	89420569	7	5	21	1	0	1	0	1	0	0	0	0	6029	363	13	0	597	0	FOLH1B	11	89420569	Frame_Shift_Del	DEL	A	TCGA-KL-8343-01A-11D-2310-10	15012255	89420569	45585947	58	1594											
TRIM49	57093	mdanderson.org	37	chr11	89537461	89537461	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgaggtttatctgctcGgttgactttgtgcattcaga	11	6	2	3	rs585471	bycluster;byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	89537461	G	T	89537461	2	4	21	1	0	0	0	0	0	0	0	1	16629	1103	39	5		5	TRIM49	11	89537461	Silent	SNP	G	TCGA-KL-8343-01A-11D-2310-10	116892	89537461	45469055	59	1595											
ETNK1	55500	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	22824236	22824236	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gttcattgattatgaatattCtggatacaactacctggcat	7	7	2	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	22824236	C	T	22824236	3	4	21	1	0	0	0	0	1	0	0	0	5312	913	32	4	1114	4	ETNK1	12	22824236	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		22824236	111027659	60	1596											
KRT77	374454	broad.mit.edu;bcgsc.ca	37	chr12	53084953	53084953	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaaacgaggcctctacTccaagatccgcctgtgggag	13	12	1	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	53084953	T	C	53084953	3	2	21	1	0	0	0	0	1	0	0	0	8551	1551	54	2	7	2	KRT77	12	53084953	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	30260717	53084953	80766942	61	1597											
LRRC43	254050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	122672370	122672370	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccttggaaagtctctaCgtcaccgctaatcactggta	9	13	3	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	122672370	C	T	122672370	2	4	21	1	0	0	0	0	0	0	0	1	9073	547	19	1		1	LRRC43	12	122672370	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	69587417	122672370	11179525	62	1598											
MYCBP2	23077	ucsc.edu;mdanderson.org	37	chr13	77799637	77799637	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatcgcacagagcctggAgggtatgttgtgattttgct	12	7	1	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	77799637	A	G	77799637	2	3	21	1	0	0	0	0	0	0	0	1	10096	291	11	2		2	MYCBP2	13	77799637	Silent	SNP	A	TCGA-KL-8343-01A-11D-2310-10		77799637	37370241	63	1599											
ADCY4	196883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	24793320	24793320	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatggtggcggtgcccaagGctattctcagtcctggtcgt	15	10	1	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	24793320	G	C	24793320	3	2	21	1	0	0	0	0	1	0	0	0	296	1203	42	5	1279	5	ADCY4	14	24793320	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10		24793320	82556220	64	1600											
BAG5	9529	broad.mit.edu	37	chr14	104026528	104026528	+	Frame_Shift_Del	DEL	T	T	-													tggcttcccggatgcaggggTttttttcaagacttacctca					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	104026528	T	-	104026528	7	5	21	1	0	1	0	1	0	0	0	0	1294	1725	60	0	373	0	BAG5	14	104026528	Frame_Shift_Del	DEL	T	TCGA-KL-8343-01A-11D-2310-10	79233208	104026528	3323012	65	1601											
INO80	54617	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41313154	41313154	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgctccacagacctccaGctggctctgggaagaactgt	11	12	1	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	41313154	G	C	41313154	3	2	21	1	0	0	0	0	1	0	0	0	7807	971	34	5	1496	5	INO80	15	41313154	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10		41313154	61218238	66	1602											
RNF111	54778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	59368246	59368246	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgacccctgctgccctGtttcttcctcccgagctgca	7	17	1	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	59368246	G	T	59368246	3	4	21	1	0	0	0	0	1	0	0	0	13520	1377	48	5	1802	5	RNF111	15	59368246	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	18055092	59368246	43163146	67	1603											
TMC5	79838	bcgsc.ca	37	chr16	19509242	19509242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttcctgtgtcaaacctagActtgcgatctagaagatcag	8	10	3	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	19509242	A	G	19509242	3	3	21	1	0	0	0	0	1	0	0	0	16092	289	10	2	3367	2	TMC5	16	19509242	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		19509242	70845511	68	1604											
RLTPR	146206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67679167	67679167	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccatggcccagacccccgaCggcatctcctgtgagctccg	10	19	1	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	67679167	C	G	67679167	3	3	21	1	0	0	0	0	1	0	0	0	13489	535	19	5	20	5	RLTPR	16	67679167	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	48169925	67679167	22675586	69	1605											
ALOX12B	242	broad.mit.edu	37	chr17	7980375	7980375	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaggcctcagcaatgaggTgtgtctccagcaggtgggcg	16	9	2	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	7980375	T	C	7980375	3	2	21	1	0	0	0	0	1	0	0	0	537	1696	59	2	925	2	ALOX12B	17	7980375	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10		7980375	73214835	70	1606											
SPDYE4	388333	ucsc.edu	37	chr17	8661681	8661681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcctcctcaaacggggggCgcgcttgaccactggccata	11	15	2	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	8661681	C	T	8661681	3	4	21	1	0	0	0	0	1	0	0	0	15131	768	27	1	717	1	SPDYE4	17	8661681	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	681306	8661681	72533529	71	1607											
C17orf53	78995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	42225428	42225428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctccctgcctccagcaCgcccagtgctgacagccgtc	9	20	0	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	42225428	C	A	42225428	3	1	21	1	0	0	0	0	1	0	0	0	1877	536	19	5	267	5	C17orf53	17	42225428	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	33563747	42225428	38969782	72	1608											
PLEKHM1	9842	mdanderson.org	37	chr17	43531297	43531297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggttcctcaggctggtctgGgtactgcacgttcacccact	12	13	3	0	rs2684501		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	43531297	G	A	43531297	3	1	21	1	0	0	0	0	1	0	0	0	12160	1232	43	3	1273	3	PLEKHM1	17	43531297	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	1305869	43531297	37663913	73	1609											
FOXJ1	2302	mdanderson.org	37	chr17	74133974	74133974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgggcctcggtattcacCgtcagcggcccggcccgggg	16	15	2	0	rs894542	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		T	74133974	C	T	74133974	2	4	21	1	0	0	0	0	0	0	0	1	6062	639	23	1		1	FOXJ1	17	74133974	Silent	SNP	C	TCGA-KL-8343-01A-11D-2310-10	30602677	74133974	7061236	74	1610											
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	6978199	6978199	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggcgctgacatactggcCatggtggagtcctgcagaag	15	9	0	2	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	6978199	C	A	6978199	3	1	21	1	0	0	0	0	1	0	0	0	8667	594	21	5	3125	5	LAMA1	18	6978199	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		6978199	71099049	75	1611											
SBNO2	22904	ucsc.edu	37	chr19	1132115	1132115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagcctcaaactgcagccAcagctgcagctgggacatgg	12	13	1	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	1132115	A	G	1132115	3	3	21	1	0	0	0	0	1	0	0	0	13959	159	6	2	3963	2	SBNO2	19	1132115	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10		1132115	57996868	76	1612											
SHD	56961	broad.mit.edu	37	chr19	4280193	4280193	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaacctggacttcgaggacCcctatgaggacgcggagagc	14	11	0	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	4280193	C	A	4280193	3	1	21	1	0	0	0	0	1	0	0	0	14373	623	22	5	135	5	SHD	19	4280193	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10	3148078	4280193	54848790	77	1613											
ANKLE1	126549	mdanderson.org	37	chr19	17393530	17393530	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgccgccgcggcctggagcTgctgctgagccaaggagcgg	17	14	0	1	rs8108174	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	17393530	T	A	17393530	3	1	21	1	0	0	0	0	1	0	0	0	632	1580	55	5	291	5	ANKLE1	19	17393530	Missense_Mutation	SNP	T	TCGA-KL-8343-01A-11D-2310-10	13113337	17393530	41735453	78	1614											
CAPN12	147968	broad.mit.edu	37	chr19	39226063	39226063	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagctccaggggcaggtAggggccctgccgcatggcgg	17	15	0	0	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		G	39226063	A	G	39226063	3	3	21	1	0	0	0	0	1	0	0	0	2650	420	15	2	558	2	CAPN12	19	39226063	Missense_Mutation	SNP	A	TCGA-KL-8343-01A-11D-2310-10	21832533	39226063	19902920	79	1615											
ZNF133	7692	bcgsc.ca	37	chr20	18295937	18295951	+	In_Frame_Del	DEL	GGGAGAAGGTGCCAT	GGGAGAAGGTGCCAT	-													atcaagcagaaggtcctgagGgagaaggtgccatgcctttg					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GGGAGAAGGTGCCAT	GGGAGAAGGTGCCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	18295951	GGGAGAAGGTGCCAT	-	18295937	7	5	21	1	0	1	0	1	0	0	0	0	17828	1233	43	0	449	0	ZNF133	20	18295937	In_Frame_Del	DEL	GGGAGAAGGTGCCAT	TCGA-KL-8343-01A-11D-2310-10		18295937	44729583	80	1616											
SEZ6L	23544	broad.mit.edu;mdanderson.org	37	chr22	26736527	26736527	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcctccacgccagacttaaCcatccagttccattcggacc	5	18	0	1	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	26736527	C	A	26736527	3	1	21	1	0	0	0	0	1	0	0	0	14240	507	18	5	2179	5	SEZ6L	22	26736527	Missense_Mutation	SNP	C	TCGA-KL-8343-01A-11D-2310-10		26736527	24568039	81	1617											
MAGEB2	4113	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	30237265	30237265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtagacctcactgatgagGaatccctgctcagttcctgg	11	11	2	3	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		A	30237265	G	A	30237265	3	1	21	1	0	0	0	0	1	0	0	0	9253	1175	41	3	570	3	MAGEB2	23	30237265	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10		30237265	125033295	82	1618											
DMD	1756	broad.mit.edu;hgsc.bcm.edu	37	chrX	31198540	31198550	+	Frame_Shift_Del	DEL	GACCAGAAAAA	GACCAGAAAAA	-													tttatggccttttgcaactcGaccagaaaaaaagcagcttt					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GACCAGAAAAA	GACCAGAAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	31198550	GACCAGAAAAA	-	31198540	7	5	21	1	0	1	0	1	0	0	0	0	4617	1066	37	0	1158	0	DMD	23	31198540	Frame_Shift_Del	DEL	GACCAGAAAAA	TCGA-KL-8343-01A-11D-2310-10	961275	31198540	124072020	83	1619	44	2									
DMD	1756	bcgsc.ca	37	chrX	31198541	31198551	+	Frame_Shift_Del	DEL	GACCAGAAAAA	GACCAGAAAAA	-													ttatggccttttgcaactcgAccagaaaaaaagcagctttg					novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GACCAGAAAAA	GACCAGAAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		-	31198551	GACCAGAAAAA	-	31198541	7	5	21	1	0	1	0	1	0	0	0	0	4617	262	10	0	1159	0	DMD	23	31198541	Frame_Shift_Del	DEL	GACCAGAAAAA	TCGA-KL-8343-01A-11D-2310-10	1	31198541	124072019	84	1620	44	2									
DMD	1756	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	32382805	32382805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtccacattctggtcaaaaGtttccatgtgtttctggtat	9	8	3	0	rs146420425		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b		C	32382805	G	C	32382805	3	2	21	1	0	0	0	0	1	0	0	0	4617	1029	36	5	6333	5	DMD	23	32382805	Missense_Mutation	SNP	G	TCGA-KL-8343-01A-11D-2310-10	1184264	32382805	122887755	85	1621											
PRAMEF4	400735	ucsc.edu;mdanderson.org	37	chr1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttagttattgtgaggaActttaacgaggtcttcagac	10	6	2	2	rs77146569	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	12939904	A	C	12939904	3	2	22	1	0	0	0	0	1	0	0	0	12525	43	2	5	542	5	PRAMEF4	1	12939904	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10		12939904	236310717	1	1622											
OPRD1	4985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	29189494	29189494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggcgccttcgtggtgtGttgggcgcccatccacatct	14	12	1	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	29189494	G	A	29189494	3	1	22	1	0	0	0	0	1	0	0	0	10963	1377	48	4	828	4	OPRD1	1	29189494	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	16249590	29189494	220061127	2	1623											
DMAP1	55929	hgsc.bcm.edu	37	chr1	44684410	44684410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagcttgagcgtctctacAaccggaccccagagcaggta	10	13	1	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	44684410	A	G	44684410	3	3	22	1	0	0	0	0	1	0	0	0	4613	130	5	4	721	4	DMAP1	1	44684410	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	15494916	44684410	204566211	3	1624											
TTC22	55001	bcgsc.ca	37	chr1	55266518	55266518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccgcccgtacacgtgtgCcagattggcccaggcattga	12	14	0	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	55266518	C	T	55266518	3	4	22	1	0	0	0	0	1	0	0	0	16795	739	26	3	1521	3	TTC22	1	55266518	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	10582108	55266518	193984103	4	1625											
GBP2	2634	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	89585913	89585913	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccatgctattgtacacgAaggtgctgctcaggaggatg	12	9	1	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	89585913	A	C	89585913	3	2	22	1	0	0	0	0	1	0	0	0	6328	246	9	5	1430	5	GBP2	1	89585913	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	34319395	89585913	159664708	5	1626											
CHD1L	9557	hgsc.bcm.edu	37	chr1	146767123	146767123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttatcagatattattttcCtagaagcaagtctgctgtcc	6	10	2	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	146767123	C	T	146767123	3	4	22	1	0	0	0	0	1	0	0	0	3353	681	24	4	2717	4	CHD1L	1	146767123	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	57181210	146767123	102483498	6	1627											
HRNR	388697	broad.mit.edu	37	chr1	152191466	152191466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccagagccatgtcggccgCggcccgaagcgtgatgggag	16	12	0	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	152191466	C	T	152191466	3	4	22	1	0	0	0	0	1	0	0	0	7417	768	27	1	5917	1	HRNR	1	152191466	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	5424343	152191466	97059155	7	1628											
PPP1R12B	4660	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	202391786	202391786	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccagtgtaggtattgtcaAtagtgaaggtgaagttccct	12	6	1	2	rs141572166		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	202391786	A	G	202391786	3	3	22	1	0	0	0	0	1	0	0	0	12440	101	4	4	471	4	PPP1R12B	1	202391786	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	50200320	202391786	46858835	8	1629											
OBSCN	84033	mdanderson.org	37	chr1	228504669	228504669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgacgccgtggcctctgcGcggctcaccgtgctgggtgg	17	15	2	0	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	228504669	G	A	228504669	2	1	22	1	0	0	0	0	0	0	0	1	10891	1074	38	1		1	OBSCN	1	228504669	Silent	SNP	G	TCGA-KL-8344-01A-11D-2310-10	26112883	228504669	20745952	9	1630											
NCKAP1	10787	broad.mit.edu	37	chr2	183791547	183791547	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attaaaatgagacttaccatAtctagcagtaaataaacaga	5	6	1	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	183791547	A	G	183791547	2	3	22	1	0	0	0	0	0	0	0	1	10300	446	16	4		4	NCKAP1	2	183791547	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10		183791547	59407826	10	1631											
RAPH1	65059	mdanderson.org	37	chr2	204305990	204305990	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggaggagggggtggtggAgggggtggtggaggaggagg	31	0	0	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	204305990	A	G	204305990	2	3	22	1	0	0	0	0	0	0	0	1	13142	291	11	2		2	RAPH1	2	204305990	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10	20514443	204305990	38893383	11	1632											
PAX3	5077	broad.mit.edu	37	chr2	223066834	223066834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtaggttccagaccccCggtgagaggggagagcgcgt	19	9	0	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	223066834	C	T	223066834	3	4	22	1	0	0	0	0	1	0	0	0	11559	652	23	1	308	1	PAX3	2	223066834	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	18760844	223066834	20132539	12	1633											
ATRIP	84126	bcgsc.ca	37	chr3	48498818	48498818	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctggtgggcagagagggTaagtccattagtcatctatt	12	8	3	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	48498818	T	C	48498818	5	2	22	1	0	0	0	0	0	0	1	0	1209	1652	57	2	849	2	ATRIP	3	48498818	Splice_Site	SNP	T	TCGA-KL-8344-01A-11D-2310-10		48498818	149523612	13	1634											
ACTR8	93973	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	53914090	53914090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggctcgaccaatccttaaaGttgttgaacctggatgtatg	10	8	0	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	53914090	G	T	53914090	3	4	22	1	0	0	0	0	1	0	0	0	217	1029	36	5	1752	5	ACTR8	3	53914090	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	5415272	53914090	144108340	14	1635											
FAM55C	91775	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	101540561	101540561	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaaagaccgtggtggtcatCcggacggccaacgcccaaga	12	14	1	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	101540561	C	G	101540561	3	3	22	1	0	0	0	0	1	0	0	0	5635	845	30	5	1461	5	FAM55C	3	101540561	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	47626471	101540561	96481869	15	1636											
EIF4G1	1981	mdanderson.org	37	chr3	184039769	184039770	+	Silent	DNP	GA	GA	AG													agaagaagaagaggaagaagGagaagcaggagaagcaggag					novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		AG	184039770	GA	AG	184039769	2	1	22	1	0	0	0	0	0	0	0	1	5075	1174	41	3		3	EIF4G1	3	184039769	Silent	DNP	GA	TCGA-KL-8344-01A-11D-2310-10	82499208	184039769	13982661	16	1637	45	2									
EIF4G1	1981	mdanderson.org	37	chr3	184039775	184039775	+	Missense_Mutation	SNP	C	C	A													agaagaggaagaaggagaagCaggagaagcaggagaagctg					rs200221361		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	184039775	C	A	184039775	3	1	22	1	0	0	0	0	1	0	0	0	5075	710	25	5	1433	5	EIF4G1	3	184039775	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	6	184039775	13982655	17	1638	45	2									
MUC4	4585	mdanderson.org	37	chr3	195506089	195506089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcctgacctgtggatGcagaggaagtgtcggtgaca	18	7	0	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	195506089	G	A	195506089	3	1	22	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195506089	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	11466314	195506089	2516341	18	1639											
C4orf32	132720	hgsc.bcm.edu	37	chr4	113066760	113066760	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagccggggagctgctGcggggcggcgacggcgggga	22	11	1	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	113066760	G	A	113066760	2	1	22	1	0	0	0	0	0	0	0	1	2283	1306	46	4		4	C4orf32	4	113066760	Silent	SNP	G	TCGA-KL-8344-01A-11D-2310-10		113066760	78087516	19	1640											
KIAA1109	84162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	123160846	123160846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggacaagcagcctgtaacaGttggagtccagtttagtagt	13	7	0	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	123160846	G	A	123160846	3	1	22	1	0	0	0	0	1	0	0	0	8269	1029	36	4	4115	4	KIAA1109	4	123160846	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10	10094086	123160846	67993430	20	1641											
RASA1	5921	broad.mit.edu	37	chr5	86564705	86564706	+	Frame_Shift_Ins	INS	-	-	G													cccccttacctgccccctttINSgggggcgggcctcgggacag					novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	86564706	-	G	86564705	7	5	22	1	0	1	1	0	0	0	0	0	13152	1821	63	0	439	0	RASA1	5	86564705	Frame_Shift_Ins	INS	-	TCGA-KL-8344-01A-11D-2310-10		86564705	94350555	21	1642											
HAVCR1	26762	ucsc.edu	37	chr5	156479572	156479572	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcgttggaacagtcgtcAttggaacagtcgttgtcgtt	12	7	1	0	rs2862716	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	156479572	A	G	156479572	3	3	22	1	0	0	0	0	1	0	0	0	7031	217	8	4	645	4	HAVCR1	5	156479572	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	69914867	156479572	24435688	22	1643											
EHMT2	10919	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr6	31848534	31848534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttggtgcagcatgaagaccCggacgggaatgatgttgggg	17	7	0	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	31848534	C	A	31848534	3	1	22	1	0	0	0	0	1	0	0	0	5021	652	23	5	272	5	EHMT2	6	31848534	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10		31848534	139266533	23	1644											
TTBK1	84630	ucsc.edu;bcgsc.ca	37	chr6	43230987	43230987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggcgatggccgttccgagAcgtcacagccccccacgcct	12	17	1	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	43230987	A	G	43230987	3	3	22	1	0	0	0	0	1	0	0	0	16782	275	10	2	1931	2	TTBK1	6	43230987	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	11382453	43230987	127884080	24	1645											
SENP6	26054	broad.mit.edu	37	chr6	76386858	76386858	+	Frame_Shift_Del	DEL	T	T	-													ataaagaataacatctccaaTttttttgcgaaaattccctt					novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		-	76386858	T	-	76386858	7	5	22	1	0	1	0	1	0	0	0	0	14147	1490	52	0	1788	0	SENP6	6	76386858	Frame_Shift_Del	DEL	T	TCGA-KL-8344-01A-11D-2310-10	33155871	76386858	94728209	25	1646											
SESN1	27244	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	109315685	109315685	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagagaagacaaacataCtctctcttttttctatttca	4	9	4	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	109315685	C	A	109315685	3	1	22	1	0	0	0	0	1	0	0	0	14221	565	20	5	575	5	SESN1	6	109315685	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	32928827	109315685	61799382	26	1647											
CCDC28A	25901	bcgsc.ca	37	chr6	139101036	139101036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccgatccagcactccttccTcactgatgtctcagatgttc	6	15	2	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	139101036	T	C	139101036	3	2	22	1	0	0	0	0	1	0	0	0	2828	1551	54	2	516	2	CCDC28A	6	139101036	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	29785351	139101036	32014031	27	1648											
PCLO	27445	broad.mit.edu	37	chr7	82579183	82579183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatattgaggactttgtgtgTctgaatctgcttctgtttga	11	5	3	3	rs201013392		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	82579183	T	C	82579183	3	2	22	1	0	0	0	0	1	0	0	0	11662	1667	58	2	4804	2	PCLO	7	82579183	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10		82579183	76559480	28	1649											
ANKIB1	54467	bcgsc.ca	37	chr7	91948698	91948698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agaatgaaaataaagatactCcttgtgattgtgctgaaaag	9	4	0	5	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	91948698	C	T	91948698	3	4	22	1	0	0	0	0	1	0	0	0	630	855	30	3	551	3	ANKIB1	7	91948698	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	9369515	91948698	67189965	29	1650											
RB1CC1	9821	broad.mit.edu	37	chr8	53586752	53586752	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggtaaagaatccagtcTtcccaaacattctctgtaac	5	11	3	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	53586752	T	C	53586752	3	2	22	1	0	0	0	0	1	0	0	0	13191	1617	56	2	4201	2	RB1CC1	8	53586752	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10		53586752	92777270	30	1651											
ODF1	4956	ucsc.edu;mdanderson.org	37	chr8	103573033	103573033	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacccctgcagcccctgcaAcccgtgcagcccatatgatc	7	19	0	1	rs62523272	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	103573033	A	G	103573033	3	3	22	1	0	0	0	0	1	0	0	0	10905	43	2	2	680	2	ODF1	8	103573033	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	49986281	103573033	42790989	31	1652											
SYBU	55638	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	110587964	110587964	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatggaaagtctaggcacAgttcgtccctcagagagcca	10	12	2	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	110587964	A	T	110587964	3	4	22	1	0	0	0	0	1	0	0	0	15527	188	7	5	832	5	SYBU	8	110587964	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	7014931	110587964	35776058	32	1653											
JAK2	3717	ucsc.edu	37	chr9	5073722	5073722	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgaagcagcaagtatgAtgagcaagctttctcacaag	9	8	2	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	5073722	A	G	5073722	3	3	22	1	0	0	0	0	1	0	0	0	7999	333	12	4	1847	4	JAK2	9	5073722	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10		5073722	136139709	33	1654											
RC3H2	54542	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	125616244	125616244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttacctctccatttcttAgttcaatttccttgcttaaa	2	11	4	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	125616244	A	G	125616244	3	3	22	1	0	0	0	0	1	0	0	0	13259	420	15	2	565	2	RC3H2	9	125616244	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	120542522	125616244	15597187	34	1655											
RAPGEF1	2889	broad.mit.edu;bcgsc.ca	37	chr9	134504010	134504010	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaccacagccactcgggTaggggacggcgccgactgtc	15	15	0	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	134504010	T	C	134504010	3	2	22	1	0	0	0	0	1	0	0	0	13135	1638	57	2	2409	2	RAPGEF1	9	134504010	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	8887766	134504010	6709421	35	1656											
ARID5B	84159	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr10	63851395	63851395	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaaagaaactgattgctAgggatgacttgtgttccagt	11	6	0	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	63851395	A	G	63851395	3	3	22	1	0	0	0	0	1	0	0	0	924	411	15	2	2211	2	ARID5B	10	63851395	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10		63851395	71683352	36	1657											
TALDO1	6888	broad.mit.edu	37	chr11	763428	763428	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctgtgccgaggcgggTgtgaccctcatctccccatt	13	14	2	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	763428	T	G	763428	2	3	22	1	0	0	0	0	0	0	0	1	15644	1683	59	5		5	TALDO1	11	763428	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10		763428	134243088	37	1658											
MUC2	4583	mdanderson.org	37	chr11	1093158	1093158	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacccatcaccaccaccacTacggtgacaccaaccccaac	3	21	1	1	rs202045556		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	1093158	T	C	1093158	2	2	22	1	0	0	0	0	0	0	0	1	10053	1509	53	2		2	MUC2	11	1093158	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	329730	1093158	133913358	38	1659											
OSBPL5	114879	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	3114269	3114269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgatggccctggtgaCgtgctgccagagcctgcggg	16	12	0	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	3114269	C	T	3114269	3	4	22	1	0	0	0	0	1	0	0	0	11359	536	19	1	699	1	OSBPL5	11	3114269	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	2021111	3114269	131892247	39	1660											
LRRC4C	57689	broad.mit.edu;mdanderson.org	37	chr11	40136544	40136544	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtggctgaagcagtagtattCccaacggaattactcaccat	9	10	1	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	40136544	C	G	40136544	2	3	22	1	0	0	0	0	0	0	0	1	9080	842	30	5		5	LRRC4C	11	40136544	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10	37022275	40136544	94869972	40	1661											
OR4A16	81327	mdanderson.org	37	chr11	55111509	55111509	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttattcaattatcacacTcatgttgaatcctttaatat	3	7	3	1	rs75872349	by1000genomes	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	55111509	T	C	55111509	3	2	22	1	0	0	0	0	1	0	0	0	11120	1551	54	2	835	2	OR4A16	11	55111509	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	14974965	55111509	79895007	41	1662											
CASP4	837	bcgsc.ca	37	chr11	104817887	104817887	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagttgtgtgatgaagatagAgcccattgtgctgtctctcc	12	8	1	4	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	104817887	A	G	104817887	3	3	22	1	0	0	0	0	1	0	0	0	2698	304	11	2	183	2	CASP4	11	104817887	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	49706378	104817887	30188629	42	1663											
TMPRSS13	84000	ucsc.edu;mdanderson.org	37	chr11	117789317	117789317	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagccggagatgcccgggcTggagatgcctgggctggaga	19	9	0	4	rs201369736		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	117789317	T	C	117789317	2	2	22	1	0	0	0	0	0	0	0	1	16349	1567	55	2		2	TMPRSS13	11	117789317	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	12971430	117789317	17217199	43	1664											
LRRK2	120892	mdanderson.org	37	chr12	40728900	40728900	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgcttcagcaggacaaAgccagcctcactagaaccct	8	16	2	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	40728900	A	G	40728900	2	3	22	1	0	0	0	0	0	0	0	1	9105	69	3	2		2	LRRK2	12	40728900	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10		40728900	93122995	44	1665											
WDR66	144406	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	122406016	122406016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtttcctatgatggctgCtacgccttcactgcgggagg	13	12	1	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	122406016	C	T	122406016	2	4	22	1	0	0	0	0	0	0	0	1	17423	805	28	4		4	WDR66	12	122406016	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10	81677116	122406016	11445879	45	1666											
PITPNM2	57605	broad.mit.edu	37	chr12	123481375	123481375	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtactggggggaggaggTggccagcagggggagggcag	24	6	0	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	123481375	T	G	123481375	3	3	22	1	0	0	0	0	1	0	0	0	12031	1696	59	5	2554	5	PITPNM2	12	123481375	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	1075359	123481375	10370520	46	1667											
COL4A1	1282	broad.mit.edu;bcgsc.ca	37	chr13	110833715	110833715	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtccccggtggccccatgTctccaggtaagccgtcaaca	11	15	2	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	110833715	T	C	110833715	3	2	22	1	0	0	0	0	1	0	0	0	3718	1667	58	2	2988	2	COL4A1	13	110833715	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10		110833715	4336163	47	1668											
OR11H12	440153	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	19377804	19377804	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtggtgtgactggcgacttCacactcccatgtacatgttc	10	11	1	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	19377804	C	A	19377804	3	1	22	1	0	0	0	0	1	0	0	0	11006	826	29	5	213	5	OR11H12	14	19377804	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10		19377804	87971736	48	1669											
DICER1	23405	hgsc.bcm.edu;ucsc.edu	37	chr14	95579561	95579561	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggtaatctagcacagtaTctgtgaagaaaaagaaattc	8	6	2	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	95579561	T	C	95579561	2	2	22	1	0	0	0	0	0	0	0	1	4558	1449	50	4		4	DICER1	14	95579561	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	76201757	95579561	11769979	49	1670											
MGA	23269	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	42034895	42034895	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccagtaatggtcgtcacAcctgtggtttcttctgagcc	9	12	4	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	42034895	A	G	42034895	2	3	22	1	0	0	0	0	0	0	0	1	9617	146	6	2		2	MGA	15	42034895	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10		42034895	60496497	50	1671											
FBN1	2200	broad.mit.edu	37	chr15	48812976	48812976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctggttagagcagcgccCgtttgtcagagctgtgtaac	13	10	1	2	rs146726731	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	48812976	C	T	48812976	3	4	22	1	0	0	0	0	1	0	0	0	5751	652	23	1	7816	1	FBN1	15	48812976	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	6778081	48812976	53718416	51	1672											
PDPR	55066	broad.mit.edu;mdanderson.org	37	chr16	70161181	70161181	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctggctgctggctctacCaggttctgtgctggcatcct	13	12	2	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	70161181	C	T	70161181	2	4	22	1	0	0	0	0	0	0	0	1	11768	581	21	4		4	PDPR	16	70161181	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10		70161181	20193572	52	1673											
WDR59	79726	ucsc.edu	37	chr16	74942865	74942865	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgggccttgtgaaataTaccaggtaacctaaaggagg	12	7	1	1	rs141093453	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	74942865	T	C	74942865	2	2	22	1	0	0	0	0	0	0	0	1	17414	1393	49	4		4	WDR59	16	74942865	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10	4781684	74942865	15411888	53	1674											
TTC19	54902	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	15930770	15930770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaaatttctgtacaacaCatcagggaagagttggctga	11	6	2	3	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	15930770	C	T	15930770	2	4	22	1	0	0	0	0	0	0	0	1	16792	477	17	4		4	TTC19	17	15930770	Silent	SNP	C	TCGA-KL-8344-01A-11D-2310-10		15930770	65264440	54	1675											
GGNBP2	79893	broad.mit.edu	37	chr17	34942391	34942391	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatttgtaatcatgatgaAcacggtaggctcacattaag	10	7	2	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	34942391	A	G	34942391	2	3	22	1	0	0	0	0	0	0	0	1	6415	40	2	2		2	GGNBP2	17	34942391	Silent	SNP	A	TCGA-KL-8344-01A-11D-2310-10	19011621	34942391	46252819	55	1676											
SYT4	6860	hgsc.bcm.edu;ucsc.edu	37	chr18	40850387	40850387	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccagtgctctccaccagtTccttctgctgctgcacccaa	6	17	2	0	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	40850387	T	C	40850387	2	2	22	1	0	0	0	0	0	0	0	1	15577	1770	62	4		4	SYT4	18	40850387	Silent	SNP	T	TCGA-KL-8344-01A-11D-2310-10		40850387	37226861	56	1677											
ZNF98	148198	mdanderson.org	37	chr19	22575313	22575313	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gttaaaggcttttccacactCttcgcatttgtagggtttct	8	9	2	0	rs71236900	bycluster;byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	22575313	C	G	22575313	3	3	22	1	0	0	0	0	1	0	0	0	18306	922	32	5	998	5	ZNF98	19	22575313	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10		22575313	36553670	57	1678											
ZNF98	148198	broad.mit.edu;mdanderson.org	37	chr19	22575373	22575373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtagaaaggtttgaggCctcattataggctttcccac	10	8	1	2	rs684900	bycluster	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		T	22575373	C	T	22575373	3	4	22	1	0	0	0	0	1	0	0	0	18306	739	26	3	1058	3	ZNF98	19	22575373	Missense_Mutation	SNP	C	TCGA-KL-8344-01A-11D-2310-10	60	22575373	36553610	58	1679											
FBXO17	115290	broad.mit.edu	37	chr19	39440795	39440795	+	Frame_Shift_Del	DEL	C	C	-													tgcagcagccacacagtgggCccgtccactatgtcgcgcca					novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		-	39440795	C	-	39440795	7	5	22	1	0	1	0	1	0	0	0	0	5779	726	26	0	691	0	FBXO17	19	39440795	Frame_Shift_Del	DEL	C	TCGA-KL-8344-01A-11D-2310-10	16865422	39440795	19688188	59	1680											
NOSIP	51070	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	50059875	50059875	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacggcacacacgtagcgcTcgctgcgggtgatgagcccc	13	15	1	2	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		C	50059875	T	C	50059875	3	2	22	1	0	0	0	0	1	0	0	0	10624	1551	54	2	261	2	NOSIP	19	50059875	Missense_Mutation	SNP	T	TCGA-KL-8344-01A-11D-2310-10	10619080	50059875	9069108	60	1681											
ZNF814	730051	bcgsc.ca	37	chr19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacattctccacattcatAaggtcttttcccagtgtgaa	5	13	3	1	novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		G	58385788	A	G	58385788	3	3	22	1	0	0	0	0	1	0	0	0	18279	362	13	4	1601	4	ZNF814	19	58385788	Missense_Mutation	SNP	A	TCGA-KL-8344-01A-11D-2310-10	8325913	58385788	743195	61	1682											
TFAP2C	7022	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr20	55208518	55208518	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagtccctggaagattgtcGctcctcagctctacgtctaa	8	13	4	1	rs146916115	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	55208518	G	A	55208518	2	1	22	1	0	0	0	0	0	0	0	1	15893	1074	38	1		1	TFAP2C	20	55208518	Silent	SNP	G	TCGA-KL-8344-01A-11D-2310-10		55208518	7817002	62	1683											
FAM118A	55007	mdanderson.org	37	chr22	45723898	45723898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggaggcctttggccggcGgcagaacaagcccatggagt	16	11	0	1	rs62001863	byfrequency	TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		A	45723898	G	A	45723898	3	1	22	1	0	0	0	0	1	0	0	0	5454	1116	39	1	486	1	FAM118A	22	45723898	Missense_Mutation	SNP	G	TCGA-KL-8344-01A-11D-2310-10		45723898	5580668	63	1684											
AR	367	hgsc.bcm.edu	37	chrX	66765207	66765208	+	Missense_Mutation	DNP	GC	GC	AG													cagcagcagcagcagcagcaGcagcagcagcagcagcagca					novel		TCGA-KL-8344-01A-11D-2310-10	TCGA-KL-8344-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3ace181a-23bd-424e-a87e-e0c01a2a2cb8	d0764fec-581b-4bd3-afe8-adcdf685562a		AG	66765208	GC	AG	66765207	3	1	22	1	0	0	0	0	1	0	0	0	838	962	34	4	221	4	AR	23	66765207	Missense_Mutation	DNP	GC	TCGA-KL-8344-01A-11D-2310-10		66765207	88505353	64	1685											
KIAA2013	90231	mdanderson.org	37	chr1	11985396	11985396	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttggctgctttgcttttgAgcacctgggggttaatgggg	15	8	0	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	11985396	A	G	11985396	3	3	23	1	0	0	0	0	1	0	0	0	8328	304	11	2	1017	2	KIAA2013	1	11985396	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10		11985396	237265225	1	1686											
KIF2C	11004	ucsc.edu	37	chr1	45228320	45228320	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctatggaagagctcaaggAgatcatacaggtaggcagct	14	7	2	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	45228320	A	G	45228320	3	3	23	1	0	0	0	0	1	0	0	0	8360	304	11	2	2035	2	KIF2C	1	45228320	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	33242924	45228320	204022301	2	1687											
AGBL4	84871	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	49100247	49100247	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagggatccagccagtgaCgattcagatcaaatcccatc	10	11	2	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	49100247	C	T	49100247	3	4	23	1	0	0	0	0	1	0	0	0	377	536	19	1	666	1	AGBL4	1	49100247	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	3871927	49100247	200150374	3	1688											
LEPR	3953	ucsc.edu;bcgsc.ca	37	chr1	66083683	66083683	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcagtgcttatcctttaaAcagcagttgtgtgattgttt	8	7	1	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	66083683	A	G	66083683	3	3	23	1	0	0	0	0	1	0	0	0	8790	43	2	2	2303	2	LEPR	1	66083683	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	16983436	66083683	183166938	4	1689											
ZNHIT6	54680	broad.mit.edu	37	chr1	86167918	86167918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaagttaataccttgcctcCgggcacgatttttcataaag	7	9	1	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	86167918	C	T	86167918	3	4	23	1	0	0	0	0	1	0	0	0	18312	652	23	1	495	1	ZNHIT6	1	86167918	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	20084235	86167918	163082703	5	1690											
SPAG17	200162	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	118596629	118596629	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtaagctggattaccttgAgagagccttctaaaatgaaa	9	6	1	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	118596629	A	T	118596629	3	4	23	1	0	0	0	0	1	0	0	0	15079	304	11	5	3977	5	SPAG17	1	118596629	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	32428711	118596629	130653992	6	1691											
FMO2	2327	ucsc.edu	37	chr1	171165803	171165803	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagacaactgtccttagtGtgagaaaatgtccagatttc	8	8	1	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	171165803	G	T	171165803	3	4	23	1	0	0	0	0	1	0	0	0	6004	1377	48	5	347	5	FMO2	1	171165803	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	52569174	171165803	78084818	7	1692											
CFHR3	10878	hgsc.bcm.edu	37	chr1	196744041	196744041	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttactaatcaatgtcattCtgaccttgtgggtttcctgt	8	8	3	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	196744041	C	T	196744041	2	4	23	1	0	0	0	0	0	0	0	1	3315	912	32	4		4	CFHR3	1	196744041	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10	25578238	196744041	52506580	8	1693											
CTSE	1510	bcgsc.ca	37	chr1	206327526	206327526	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttggaggctacgaccacTcccatttctctgggagcctg	10	12	1	0	rs145082936		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	206327526	T	C	206327526	3	2	23	1	0	0	0	0	1	0	0	0	4064	1551	54	2	737	2	CTSE	1	206327526	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10	9583485	206327526	42923095	9	1694											
KIDINS220	57498	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	8871660	8871660	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcttcaaatctgtctggaaGaggcttgacctttcggaaga	11	8	3	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	8871660	G	A	8871660	2	1	23	1	0	0	0	0	0	0	0	1	8332	929	33	4		4	KIDINS220	2	8871660	Silent	SNP	G	TCGA-KL-8345-01A-11D-2310-10		8871660	234327713	10	1695											
EHBP1	23301	broad.mit.edu	37	chr2	63223821	63223821	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatgtagtaggagaattggCagcactagagaatgagcaaa	13	4	0	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	63223821	C	A	63223821	3	1	23	1	0	0	0	0	1	0	0	0	5012	710	25	5	3314	5	EHBP1	2	63223821	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	54352161	63223821	179975552	11	1696											
LRP1B	53353	broad.mit.edu	37	chr2	141819781	141819781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aattatccttgttcggttcaTcccatccatgtcacatctct	4	13	3	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	141819781	T	C	141819781	3	2	23	1	0	0	0	0	1	0	0	0	9027	1435	50	4	13060	4	LRP1B	2	141819781	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10	78595960	141819781	101379592	12	1697											
TLK1	9874	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	171871451	171871451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caagttctgcctggatttctGcctcttcctgaaaatgaaga	8	10	3	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	171871451	G	T	171871451	3	4	23	1	0	0	0	0	1	0	0	0	16047	1319	46	5	1092	5	TLK1	2	171871451	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	30051670	171871451	71327922	13	1698											
TTN	7273	broad.mit.edu	37	chr2	179480474	179480474	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcttttccttgaacaagAtcaggaactgtgaattctag	7	8	3	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	179480474	A	G	179480474	2	3	23	1	0	0	0	0	0	0	0	1	16841	330	12	4		4	TTN	2	179480474	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	7609023	179480474	63718899	14	1699											
IGFBP5	3488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	217559222	217559222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccccgcggccgtgcagcaGggcgtgcagcggcttctcct	14	16	1	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	217559222	G	T	217559222	3	4	23	1	0	0	0	0	1	0	0	0	7643	991	35	5	557	5	IGFBP5	2	217559222	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	38078748	217559222	25640151	15	1700											
TTLL4	9654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	219610500	219610500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtcaagcagaccattggaCggtcccacttcaaaatcagc	8	12	3	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	219610500	C	T	219610500	3	4	23	1	0	0	0	0	1	0	0	0	16835	527	19	1	1891	1	TTLL4	2	219610500	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	2051278	219610500	23588873	16	1701											
MAGI1	9223	mdanderson.org	37	chr3	65425591	65425591	+	Silent	SNP	T	T	C													tgctgctgctgctgctgctgTtgctgctgctgttgctgctg					rs79701778	bycluster;byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	65425591	T	C	65425591	2	2	23	1	0	0	0	0	0	0	0	1	9267	1722	60	2		2	MAGI1	3	65425591	Silent	SNP	T	TCGA-KL-8345-01A-11D-2310-10		65425591	132596839	17	1702	46	2									
MAGI1	9223	mdanderson.org	37	chr3	65425594	65425594	+	Silent	SNP	C	C	T													tgctgctgctgctgctgttgCtgctgctgttgctgctgctg					novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	65425594	C	T	65425594	2	4	23	1	0	0	0	0	0	0	0	1	9267	796	28	4		4	MAGI1	3	65425594	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10	3	65425594	132596836	18	1703	46	2									
GRAMD1C	54762	hgsc.bcm.edu;mdanderson.org	37	chr3	113623086	113623086	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaattagtcgggtttcagaAacagagtcattcgatggaaa	10	6	3	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	113623086	A	G	113623086	2	3	23	1	0	0	0	0	0	0	0	1	6807	11	1	4		4	GRAMD1C	3	113623086	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	48197492	113623086	84399344	19	1704											
RGS12	6002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	3417849	3417849	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaggagcagcagctgcagGtaaccgcaggctgtgggagc	16	10	1	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	3417849	G	A	3417849	5	1	23	1	0	0	0	0	0	0	1	0	13388	1275	44	3	2508	3	RGS12	4	3417849	Splice_Site	SNP	G	TCGA-KL-8345-01A-11D-2310-10		3417849	187736427	20	1705											
EXOC1	55763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	56737009	56737009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcagatctctgaaagcaacCacctaattcatcttagtaac	4	11	4	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	56737009	C	T	56737009	3	4	23	1	0	0	0	0	1	0	0	0	5340	594	21	4	787	4	EXOC1	4	56737009	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	53319160	56737009	134417267	21	1706											
RASGEF1B	153020	ucsc.edu	37	chr4	82368697	82368697	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttctgcacgaacgcctgAacaaattcttctggcccaat	6	14	3	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	82368697	A	G	82368697	2	3	23	1	0	0	0	0	0	0	0	1	13162	233	9	4		4	RASGEF1B	4	82368697	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	25631688	82368697	108785579	22	1707											
DSPP	1834	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	88535754	88535754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agacagcagtgacagcaacaGcagtgacagtagtgacaaca	11	9	0	4	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	88535754	G	T	88535754	3	4	23	1	0	0	0	0	1	0	0	0	4819	971	34	5	1954	5	DSPP	4	88535754	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	6167057	88535754	102618522	23	1708											
ANK2	287	hgsc.bcm.edu;ucsc.edu	37	chr4	114276401	114276401	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcctaaagaatgagggGgtagccggctctccgtgtgg	16	8	1	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	114276401	G	A	114276401	2	1	23	1	0	0	0	0	0	0	0	1	621	1219	43	3		3	ANK2	4	114276401	Silent	SNP	G	TCGA-KL-8345-01A-11D-2310-10	25740647	114276401	76877875	24	1709											
FAT4	79633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	126389910	126389910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtggtacatataagcTcaccaccatgaagaaggtgt	11	8	1	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	126389910	T	C	126389910	3	2	23	1	0	0	0	0	1	0	0	0	5741	1551	54	2	12185	2	FAT4	4	126389910	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10	12113509	126389910	64764366	25	1710											
PALLD	23022	broad.mit.edu	37	chr4	169837136	169837136	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgcaggctcctggagaTctgactgttcaagaaggaaa	11	8	3	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	169837136	T	C	169837136	2	2	23	1	0	0	0	0	0	0	0	1	11486	1432	50	4		4	PALLD	4	169837136	Silent	SNP	T	TCGA-KL-8345-01A-11D-2310-10	43447226	169837136	21317140	26	1711											
HMGCS1	3157	broad.mit.edu	37	chr5	43297257	43297257	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggcatgttgcatatgtgTcccacgaagccctattagaa	9	9	0	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	43297257	T	C	43297257	3	2	23	1	0	0	0	0	1	0	0	0	7290	1667	58	2	1004	2	HMGCS1	5	43297257	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		43297257	137618003	27	1712											
SH3TC2	79628	broad.mit.edu	37	chr5	148407015	148407015	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacactttggaaaggatgagAcacagggccctctgggtgct	13	9	1	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	148407015	A	G	148407015	2	3	23	1	0	0	0	0	0	0	0	1	14360	273	10	2		2	SH3TC2	5	148407015	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	105109758	148407015	32508245	28	1713											
GABBR1	2550	ucsc.edu	37	chr6	29580384	29580384	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccgctggcatcaaacaccAcatggccctgagggaaggaa	12	12	1	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	29580384	A	G	29580384	3	3	23	1	0	0	0	0	1	0	0	0	6207	159	6	2	1355	2	GABBR1	6	29580384	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10		29580384	141534683	29	1714											
FAM26F	441168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	116784510	116784510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gatttttacatctgtcacccGatgcctatctccagttagtt	6	11	3	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	116784510	G	A	116784510	3	1	23	1	0	0	0	0	1	0	0	0	5600	1058	37	1	596	1	FAM26F	6	116784510	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	87204126	116784510	54330557	30	1715											
LRCH4	4034	broad.mit.edu	37	chr7	100174729	100174729	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgcatggcttgagtggaCacggcggcggcccctcccac	14	14	0	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	100174729	C	A	100174729	2	1	23	1	0	0	0	0	0	0	0	1	9007	465	17	5		5	LRCH4	7	100174729	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10		100174729	58963934	31	1716											
PODXL	5420	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	131189141	131189141	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cagagggacgatccagctgtCccccagctccccgttgaggc	12	16	0	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	131189141	C	A	131189141	3	1	23	1	0	0	0	0	1	0	0	0	12260	855	30	5	74	5	PODXL	7	131189141	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	31014412	131189141	27949522	32	1717											
VIPR2	7434	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	158823446	158823446	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcgcggacggggtcgggcacCggcttcgccattttcgcttc	14	14	0	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	158823446	C	A	158823446	3	1	23	1	0	0	0	0	1	0	0	0	17276	652	23	5	142	5	VIPR2	7	158823446	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	27634305	158823446	315217	33	1718											
TJP2	9414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	71845079	71845079	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatgatgtcgggatattTgttgctggcattcaagaagg	14	5	1	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	71845079	T	G	71845079	3	3	23	1	0	0	0	0	1	0	0	0	16034	1809	63	5	1801	5	TJP2	9	71845079	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		71845079	69368352	34	1719											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu	37	chr10	89711920	89711926	+	Frame_Shift_Del	DEL	TACCTGT	TACCTGT	-													gctatgtgtattattatagcTacctgttaaagaatcatctg					novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	TACCTGT	TACCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		-	89711926	TACCTGT	-	89711920	7	5	23	1	0	1	0	1	0	0	0	0	12827	1522	53	0	560	0	PTEN	10	89711920	Frame_Shift_Del	DEL	TACCTGT	TCGA-KL-8345-01A-11D-2310-10		89711920	45822827	35	1720	47	2									
PTEN	5728	bcgsc.ca	37	chr10	89711921	89711927	+	Frame_Shift_Del	DEL	TACCTGT	TACCTGT	-													ctatgtgtattattatagctAcctgttaaagaatcatctgg					novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	TACCTGT	TACCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		-	89711927	TACCTGT	-	89711921	7	5	23	1	0	1	0	1	0	0	0	0	12827	391	14	0	561	0	PTEN	10	89711921	Frame_Shift_Del	DEL	TACCTGT	TCGA-KL-8345-01A-11D-2310-10	1	89711921	45822826	36	1721	47	2									
MTCH2	23788	broad.mit.edu;hgsc.bcm.edu	37	chr11	47653265	47653265	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatcatctctcgagttgtcTagaaacaatcaacacacact	5	12	4	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	47653265	T	C	47653265	5	2	23	1	0	0	0	0	0	0	1	0	9992	1536	53	2	575	2	MTCH2	11	47653265	Splice_Site	SNP	T	TCGA-KL-8345-01A-11D-2310-10		47653265	87353251	37	1722											
OR1S2	219958	mdanderson.org	37	chr11	57971190	57971190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgagatgactgtgagcaaaGtgccgaacctggcccgcatg	13	11	0	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	57971190	G	A	57971190	3	1	23	1	0	0	0	0	1	0	0	0	11052	1029	36	4	516	4	OR1S2	11	57971190	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	10317925	57971190	77035326	38	1723											
RASSF3	283349	mdanderson.org	37	chr12	65004520	65004520	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagccccgctccggccaAcaagtgagtggcgcgcggcg	16	15	0	1	rs77813527	byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	65004520	A	G	65004520	2	3	23	1	0	0	0	0	0	0	0	1	13179	40	2	2		2	RASSF3	12	65004520	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10		65004520	68847375	39	1724											
PABPC3	5042	mdanderson.org	37	chr13	25671795	25671795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacacagacagtgggtccaCgtcctgcagctgctgctgct	11	14	0	1	rs113416318	byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	25671795	C	T	25671795	3	4	23	1	0	0	0	0	1	0	0	0	11444	536	19	1	1461	1	PABPC3	13	25671795	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10		25671795	89498083	40	1725											
COMMD6	170622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	76111919	76111919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcggacttagcatccagcGgcggctcgctggacgcctcc	12	16	0	0	rs143172831	alternate_allele	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	76111919	G	A	76111919	3	1	23	1	0	0	0	0	1	0	0	0	3749	1116	39	1	293	1	COMMD6	13	76111919	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	50440124	76111919	39057959	41	1726											
APEX1	328	broad.mit.edu	37	chr14	20925577	20925578	+	Frame_Shift_Del	DEL	CT	CT	-													gattactttttgttgtcccaCtctctgttacctgcattgtg					novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		-	20925578	CT	-	20925577	7	5	23	1	0	1	0	1	0	0	0	0	771	564	20	0	881	0	APEX1	14	20925577	Frame_Shift_Del	DEL	CT	TCGA-KL-8345-01A-11D-2310-10		20925577	86423963	42	1727											
C14orf21	161424	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	24773484	24773484	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgctgcagaacctaaagGttagatttctggcttttgcc	11	8	1	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	24773484	G	A	24773484	5	1	23	1	0	0	0	0	0	0	1	0	1781	1275	44	3	1678	3	C14orf21	14	24773484	Splice_Site	SNP	G	TCGA-KL-8345-01A-11D-2310-10	3847907	24773484	82576056	43	1728											
BEGAIN	57596	ucsc.edu	37	chr14	101005154	101005154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtgctggcctgcgcgtGctccttctcctccgacgtgg	13	16	1	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	101005154	G	T	101005154	3	4	23	1	0	0	0	0	1	0	0	0	1401	1319	46	5	851	5	BEGAIN	14	101005154	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	76231670	101005154	6344386	44	1729											
CACNA1H	8912	ucsc.edu	37	chr16	1260601	1260601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcgggtcttcctcagcGtctccaattacatcttcacg	9	13	5	0	rs28365125		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	1260601	G	A	1260601	3	1	23	1	0	0	0	0	1	0	0	0	2570	1145	40	1	4062	1	CACNA1H	16	1260601	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10		1260601	89094152	45	1730											
CORO7	79585	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr16	4445319	4445319	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcggctttgttctggggtCaaagatccgcagctgcttgt	13	11	2	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	4445319	C	T	4445319	3	4	23	1	0	0	0	0	1	0	0	0	3788	826	29	4	2279	4	CORO7	16	4445319	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	3184718	4445319	85909434	46	1731											
KRT38	8687	mdanderson.org	37	chr17	39595539	39595539	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggccttggccagggtcgcAtcatccaggagcttctgtgt	13	12	2	0	rs117668654	byfrequency	TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	39595539	A	G	39595539	2	3	23	1	0	0	0	0	0	0	0	1	8536	214	8	4		4	KRT38	17	39595539	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10		39595539	41599671	47	1732											
BPTF	2186	hgsc.bcm.edu;bcgsc.ca	37	chr17	65908787	65908787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgatgacctccacagtggCcacagaatcaaaaactgtga	8	12	1	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	65908787	C	T	65908787	3	4	23	1	0	0	0	0	1	0	0	0	1503	739	26	3	5215	3	BPTF	17	65908787	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	26313248	65908787	15286423	48	1733											
SSTR2	6752	broad.mit.edu	37	chr17	71165682	71165682	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccgctatgccaagatgaAgaccatcaccaacatttaca	5	14	1	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	71165682	A	G	71165682	3	3	23	1	0	0	0	0	1	0	0	0	15298	72	3	2	226	2	SSTR2	17	71165682	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	5256895	71165682	10029528	49	1734											
CXXC1	30827	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr18	47812501	47812501	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgcccggcgctgcaggTctggatcagggacaggcctc	14	15	2	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	47812501	T	G	47812501	3	3	23	1	0	0	0	0	1	0	0	0	4128	1667	58	5	1680	5	CXXC1	18	47812501	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		47812501	30264747	50	1735											
MUC16	94025	broad.mit.edu	37	chr19	9068199	9068199	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccggtgacattgtgggcTtttcagtgccttggatggat	14	7	1	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		C	9068199	T	C	9068199	3	2	23	1	0	0	0	0	1	0	0	0	10051	1609	56	2	24604	2	MUC16	19	9068199	Missense_Mutation	SNP	T	TCGA-KL-8345-01A-11D-2310-10		9068199	50060784	51	1736											
MAG	4099	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	35800935	35800935	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgggagttcgtgtactcgGagcgcagcggcctcgtgctc	16	12	0	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	35800935	G	T	35800935	4	4	23	1	0	0	0	0	0	1	0	0	9235	1175	41	5	1412	5	MAG	19	35800935	Nonsense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	26732736	35800935	23328048	52	1737											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr21	41514495	41514495	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcctcttacctccgtccatGaggttggcccagtaaatgac	9	13	1	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	41514495	G	A	41514495	2	1	23	1	0	0	0	0	0	0	0	1	4805	1277	45	4		4	DSCAM	21	41514495	Silent	SNP	G	TCGA-KL-8345-01A-11D-2310-10		41514495	6615400	53	1738											
GAB4	128954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	17443634	17443634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcccgagtcacagcttggCgcccctgggaggctctgagg	16	13	2	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	17443634	C	T	17443634	3	4	23	1	0	0	0	0	1	0	0	0	6203	768	27	1	14	1	GAB4	22	17443634	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10		17443634	33860932	54	1739											
ARVCF	421	ucsc.edu	37	chr22	19967489	19967489	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgtacacgccgcttgacAccctcgttctcaaagcacag	8	16	1	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	19967489	A	G	19967489	2	3	23	1	0	0	0	0	0	0	0	1	1007	146	6	2		2	ARVCF	22	19967489	Silent	SNP	A	TCGA-KL-8345-01A-11D-2310-10	2523855	19967489	31337077	55	1740											
CSF2RB	1439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	37333576	37333576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagccaggcccgcctgccGcctcccacacacctgagaaa	8	21	0	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		A	37333576	G	A	37333576	3	1	23	1	0	0	0	0	1	0	0	0	3966	1087	38	1	1776	1	CSF2RB	22	37333576	Missense_Mutation	SNP	G	TCGA-KL-8345-01A-11D-2310-10	17366087	37333576	13970990	56	1741											
CELSR1	9620	broad.mit.edu;mdanderson.org	37	chr22	46763729	46763729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgatgagcagcagcaggAggaatgcggtcctcagcagg	16	10	1	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	46763729	A	G	46763729	3	3	23	1	0	0	0	0	1	0	0	0	3250	304	11	2	1100	2	CELSR1	22	46763729	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	9430153	46763729	4540837	57	1742											
SH3KBP1	30011	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	19854348	19854348	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgatttcacccacgctgatCgtcagctcatcatcgtgctg	8	13	4	2	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	19854348	C	T	19854348	2	4	23	1	0	0	0	0	0	0	0	1	14353	871	31	1		1	SH3KBP1	23	19854348	Silent	SNP	C	TCGA-KL-8345-01A-11D-2310-10		19854348	135416212	58	1743											
KDM5C	8242	broad.mit.edu;mdanderson.org	37	chrX	53239928	53239928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggctgagaagaccatgcCcacgtagagccagggcacct	12	12	0	3	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	53239928	C	T	53239928	3	4	23	1	0	0	0	0	1	0	0	0	8196	623	22	3	3331	3	KDM5C	23	53239928	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	33385580	53239928	102030632	59	1744											
TAF1	6872	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	70627428	70627428	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacatttctccttagagacCtcataagtccatccaccggc	5	15	3	1	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		T	70627428	C	T	70627428	3	4	23	1	0	0	0	0	1	0	0	0	15614	681	24	4	4278	4	TAF1	23	70627428	Missense_Mutation	SNP	C	TCGA-KL-8345-01A-11D-2310-10	17387500	70627428	84643132	60	1745											
SLITRK2	84631	broad.mit.edu	37	chrX	144906354	144906354	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcaataaaaccgttttatAtggaactcccaggaaatgct	6	8	1	0	novel		TCGA-KL-8345-01A-11D-2310-10	TCGA-KL-8345-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e75d4ed6-f99b-480f-b14b-66803de8151d	ba203c68-18a0-47ab-953c-39e98349d141		G	144906354	A	G	144906354	3	3	23	1	0	0	0	0	1	0	0	0	14841	449	16	4	2413	4	SLITRK2	23	144906354	Missense_Mutation	SNP	A	TCGA-KL-8345-01A-11D-2310-10	74278926	144906354	10364206	61	1746											
PRAMEF2	65122	mdanderson.org	37	chr1	12921594	12921594	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cccctgcccttcctgtggctCatcaccgtctgaggaactgg	10	16	3	1	rs2982090		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	12921594	C	G	12921594	4	3	24	1	0	0	0	0	0	1	0	0	12521	838	29	5	1395	5	PRAMEF2	1	12921594	Nonsense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		12921594	236329027	1	1747											
FAM131C	348487	mdanderson.org	37	chr1	16384986	16384986	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagccgctgtccatggagggGagggagcccggggggtgggt	23	8	0	0	rs28496958	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	16384986	G	T	16384986	2	4	24	1	0	0	0	0	0	0	0	1	5484	1161	41	5		5	FAM131C	1	16384986	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	3463392	16384986	232865635	2	1748											
NR0B2	8431	ucsc.edu	37	chr1	27240351	27240351	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggggacagccttgaggctGgagctcagaagtgcgtagag	18	8	1	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	27240351	G	A	27240351	2	1	24	1	0	0	0	0	0	0	0	1	10693	1335	47	4		4	NR0B2	1	27240351	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	10855365	27240351	222010270	3	1749											
COL16A1	1307	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	32148832	32148832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggggccaggtggtcccCgaggtcccggaagtccctgc	16	14	0	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	32148832	C	T	32148832	3	4	24	1	0	0	0	0	1	0	0	0	3702	652	23	1	2526	1	COL16A1	1	32148832	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	4908481	32148832	217101789	4	1750											
TAL1	6886	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	47685621	47685621	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaccacagggtccttgccaGtcttggcccgctgggtgccc	12	17	1	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	47685621	G	T	47685621	3	4	24	1	0	0	0	0	1	0	0	0	15642	1029	36	5	232	5	TAL1	1	47685621	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	15536789	47685621	201565000	5	1751											
CELSR2	1952	ucsc.edu	37	chr1	109810544	109810544	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagctagccctgctcctgcgCaacgccacgcagcacacagc	9	19	0	0	rs2281894	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	109810544	C	A	109810544	2	1	24	1	0	0	0	0	0	0	0	1	3251	697	25	5		5	CELSR2	1	109810544	Silent	SNP	C	TCGA-KL-8346-01A-11D-2310-10	62124923	109810544	139440077	6	1752											
OR10K1	391109	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	158436256	158436256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaattcaaatcagccctacGaagaacaatcggccaaactt	7	11	2	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	158436256	G	A	158436256	3	1	24	1	0	0	0	0	1	0	0	0	10992	1058	37	1	907	1	OR10K1	1	158436256	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	48625712	158436256	90814365	7	1753											
SPTA1	6708	broad.mit.edu	37	chr1	158647558	158647558	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggcaacaaggtctttGccatagtcctcagaggtgag	12	9	3	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	158647558	G	T	158647558	2	4	24	1	0	0	0	0	0	0	0	1	15216	1306	46	5		5	SPTA1	1	158647558	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	211302	158647558	90603063	8	1754											
ASPM	259266	hgsc.bcm.edu	37	chr1	197073057	197073057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgacaataattgctttaTacattttcagataatactgc	5	6	1	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	197073057	T	C	197073057	3	2	24	1	0	0	0	0	1	0	0	0	1060	1406	49	4	5153	4	ASPM	1	197073057	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	38425499	197073057	52177564	9	1755											
USH2A	7399	ucsc.edu	37	chr1	215916578	215916578	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggagtcaaattttccagaAgggtggattgatgatgacca	12	5	1	4	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	215916578	A	G	215916578	3	3	24	1	0	0	0	0	1	0	0	0	17142	72	3	2	4175	2	USH2A	1	215916578	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	18843521	215916578	33334043	10	1756											
SLC4A5	57835	bcgsc.ca	37	chr2	74480132	74480132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagggcaccttcttgggggGctcaatccggatatttgggt	15	8	2	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	74480132	G	A	74480132	3	1	24	1	0	0	0	0	1	0	0	0	14755	1203	42	3	2244	3	SLC4A5	2	74480132	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10		74480132	168719241	11	1757											
STARD7	56910	broad.mit.edu	37	chr2	96861118	96861118	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcctgtaattgggcgccGccacagcttaaagtgtttct	12	10	1	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	96861118	G	A	96861118	3	1	24	1	0	0	0	0	1	0	0	0	15362	1086	38	1	680	1	STARD7	2	96861118	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	22380986	96861118	146338255	12	1758											
IL1R2	7850	bcgsc.ca	37	chr2	102632493	102632493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacccgtgacaaaactgacGtgaagattcaatggtacaag	9	9	2	4	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	102632493	G	A	102632493	3	1	24	1	0	0	0	0	1	0	0	0	7720	1145	40	1	503	1	IL1R2	2	102632493	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	5771375	102632493	140566880	13	1759											
POTEE	445582	mdanderson.org	37	chr2	132021781	132021781	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catcaaagagaagctgtgctAtgttgccctggacttcgagc	11	10	1	1	rs77172375	bycluster	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	132021781	A	T	132021781	3	4	24	1	0	0	0	0	1	0	0	0	12344	449	16	5	2811	5	POTEE	2	132021781	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	29389288	132021781	111177592	14	1760											
TTN	7273	broad.mit.edu	37	chr2	179639167	179639167	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgattctggaacttctatgTcctgaagttctttcacaaac	6	9	4	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	179639167	T	C	179639167	3	2	24	1	0	0	0	0	1	0	0	0	16841	1667	58	2	104496	2	TTN	2	179639167	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	47617386	179639167	63560206	15	1761											
RAF1	5894	broad.mit.edu	37	chr3	12660138	12660138	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaactattgtaggagagAtgcagctggagccatcaaac	12	8	1	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	12660138	A	G	12660138	3	3	24	1	0	0	0	0	1	0	0	0	13094	333	12	4	1927	4	RAF1	3	12660138	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		12660138	185362292	16	1762											
TBC1D5	9779	broad.mit.edu	37	chr3	17415993	17415993	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatgctcaaaagttgaaaaCcaaggttcagcagtttccat	7	9	3	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	17415993	C	T	17415993	4	4	24	1	0	0	0	0	0	1	0	0	15727	508	18	3	1709	3	TBC1D5	3	17415993	Nonsense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	4755855	17415993	180606437	17	1763											
TOP2B	7155	broad.mit.edu;hgsc.bcm.edu	37	chr3	25647566	25647570	+	Frame_Shift_Del	DEL	GAGAA	GAGAA	-													tctgagaatatgaaggaaatGagaagagatttccaaaatcc					novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	GAGAA	GAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		-	25647570	GAGAA	-	25647566	7	5	24	1	0	1	0	1	0	0	0	0	16471	1294	45	0	554	0	TOP2B	3	25647566	Frame_Shift_Del	DEL	GAGAA	TCGA-KL-8346-01A-11D-2310-10	8231573	25647566	172374864	18	1764	48	2									
TOP2B	7155	bcgsc.ca	37	chr3	25647567	25647571	+	Frame_Shift_Del	DEL	GAGAA	GAGAA	-													ctgagaatatgaaggaaatgAgaagagatttccaaaatcct					novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	GAGAA	GAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		-	25647571	GAGAA	-	25647567	7	5	24	1	0	1	0	1	0	0	0	0	16471	304	11	0	555	0	TOP2B	3	25647567	Frame_Shift_Del	DEL	GAGAA	TCGA-KL-8346-01A-11D-2310-10	1	25647567	172374863	19	1765	48	2									
ZNF35	7584	broad.mit.edu	37	chr3	44700856	44700856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacattacggaaaaatgctAtgaatgtaatgaatgtggga	10	5	0	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	44700856	A	G	44700856	3	3	24	1	0	0	0	0	1	0	0	0	17967	449	16	4	1011	4	ZNF35	3	44700856	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	19053289	44700856	153321574	20	1766											
CHRD	8646	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	184100469	184100469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggccccccacagcagggcGtagggggcatcaccctgctc	13	16	1	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	184100469	G	A	184100469	3	1	24	1	0	0	0	0	1	0	0	0	3401	1145	40	1	919	1	CHRD	3	184100469	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	139399613	184100469	13921961	21	1767											
MUC4	4585	mdanderson.org	37	chr3	195507539	195507539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaaaGgctggtgacaggaagagggg	18	5	0	3	rs112530244		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	195507539	G	A	195507539	3	1	24	1	0	0	0	0	1	0	0	0	10056	1000	35	4		4	MUC4	3	195507539	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	11407070	195507539	2514891	22	1768			1	20		4	4	5041	N	GC_G_C_A	3.004864e-07
MUC4	4585	mdanderson.org	37	chr3	195509497	195509498	+	Missense_Mutation	DNP	GC	GC	AT													gggtggcgtgacctgtggatGctgaggaagtgtcggtgtca					novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		AT	195509498	GC	AT	195509497	3	1	24	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195509497	Missense_Mutation	DNP	GC	TCGA-KL-8346-01A-11D-2310-10	1958	195509497	2512933	23	1769			1	20		4	4	5041	N	GC_G_C_A	3.004864e-07
MUC4	4585	mdanderson.org	37	chr3	195512549	195512549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgtcggtgacaggaagagAggtggcgtgacctgtgggta	19	6	0	3	rs201832232		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	195512549	A	G	195512549	3	3	24	1	0	0	0	0	1	0	0	0	10056	304	11	2		2	MUC4	3	195512549	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	3052	195512549	2509881	24	1770			1	20		4	4	5041	N	GC_G_C_A	3.004864e-07
MUC4	4585	mdanderson.org	37	chr3	195512579	195512579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtgggtactgaggaagCgtcggtgacaggaagagggg	19	6	0	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	195512579	C	T	195512579	3	4	24	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195512579	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	30	195512579	2509851	25	1771			1	20		4	4	5041	N	GC_G_C_A	3.004864e-07
CRIPAK	285464	mdanderson.org	37	chr4	1388524	1388524	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtccatgtggagtgcccAcctgctcatgtgcccatgtg	12	13	1	0	rs55944930	bycluster;byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	1388524	A	G	1388524	2	3	24	1	0	0	0	0	0	0	0	1	3906	146	6	2		2	CRIPAK	4	1388524	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		1388524	189765752	26	1772											
PDS5A	23244	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr4	39839775	39839775	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgctgttactgttcttttCtttcctcggtcactgctgat	8	11	3	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	39839775	C	G	39839775	3	3	24	1	0	0	0	0	1	0	0	0	11770	912	32	5	310	5	PDS5A	4	39839775	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	38451251	39839775	151314501	27	1773											
PPM1K	152926	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	89199470	89199470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacattttccaagctgattTtgggaattggcttgccatac	8	10	0	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	89199470	T	C	89199470	3	2	24	1	0	0	0	0	1	0	0	0	12428	1841	64	4	876	4	PPM1K	4	89199470	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	49359695	89199470	101954806	28	1774											
ANK2	287	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr4	114290874	114290874	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagagaggagagctctccGcggaaaaccagcctcgtaat	11	12	1	2	rs143290935		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	114290874	G	A	114290874	2	1	24	1	0	0	0	0	0	0	0	1	621	1074	38	1		1	ANK2	4	114290874	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	25091404	114290874	76863402	29	1775											
PCDHA9	9752	mdanderson.org	37	chr5	140228473	140228473	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacattaacgacaaccctccAgtgttcccagcgacacaaaa	6	14	0	0	rs364063	bycluster;byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	140228473	A	G	140228473	2	3	24	1	0	0	0	0	0	0	0	1	11610	175	7	2		2	PCDHA9	5	140228473	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		140228473	40686787	30	1776											
ATP10B	23120	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	160044894	160044894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggcaatgcatagtgtgcGcaggccatctcttgcataca	10	11	1	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	160044894	G	A	160044894	3	1	24	1	0	0	0	0	1	0	0	0	1121	1087	38	1	1926	1	ATP10B	5	160044894	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	19816421	160044894	20870366	31	1777											
FAM65B	9750	ucsc.edu	37	chr6	24825517	24825517	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgtcacagcctcactaacTtcgttgtcctctctggttaa	7	13	3	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	24825517	T	C	24825517	2	2	24	1	0	0	0	0	0	0	0	1	5649	1606	56	2		2	FAM65B	6	24825517	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10		24825517	146289550	32	1778											
TNXB	7148	broad.mit.edu	37	chr6	31977381	31977381	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctccagaagtctgtctgTccatccatgcggcgctggaa	10	14	2	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	31977381	T	C	31977381	1	2	24	0	1	0	0	0	0	0	0	0	16450	1654	58	2		2	TNXB	6	31977381	RNA	SNP	T	TCGA-KL-8346-01A-11D-2310-10	7151864	31977381	139137686	33	1779											
RADIL	55698	bcgsc.ca	37	chr7	4917349	4917349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccataattcctggatcaagAggggcttctcactgtcccca	8	13	2	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	4917349	A	G	4917349	3	3	24	1	0	0	0	0	1	0	0	0	13089	304	11	2	2861	2	RADIL	7	4917349	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		4917349	154221314	34	1780											
WBSCR27	155368	hgsc.bcm.edu	37	chr7	73254452	73254455	+	Splice_Site	DEL	TGTG	TGTG	-													agcaccgcgtcgaaggtcccTgtgtgtgtgtgggggggggt					novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	TGTG	TGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		-	73254455	TGTG	-	73254452	8	5	24	1	0	1	0	1	0	0	1	0	17372	1594	55	0	358	0	WBSCR27	7	73254452	Splice_Site	DEL	TGTG	TCGA-KL-8346-01A-11D-2310-10	68337103	73254452	85884211	35	1781											
PRSS1	5644	mdanderson.org	37	chr7	142459667	142459667	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcacaacatcgaagtcctGgaggggaatgagcagttcat	13	8	1	1	rs142476093	alternate_allele	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	142459667	G	A	142459667	2	1	24	1	0	0	0	0	0	0	0	1	12703	1335	47	4		4	PRSS1	7	142459667	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	69205215	142459667	16678996	36	1782											
ADRA1A	148	broad.mit.edu	37	chr8	26722373	26722373	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttacccagcaccccgaaAagaatgaggccccccaagat	8	14	0	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	26722373	A	C	26722373	2	2	24	1	0	0	0	0	0	0	0	1	334	1	1	5		5	ADRA1A	8	26722373	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		26722373	119641649	37	1783											
KCNV1	27012	broad.mit.edu	37	chr8	110980349	110980349	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatctcccccgctgctccTagtacttgctctttctctgc	5	17	4	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	110980349	T	C	110980349	3	2	24	1	0	0	0	0	1	0	0	0	8155	1521	53	2	35	2	KCNV1	8	110980349	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	84257976	110980349	35383673	38	1784											
GDA	9615	ucsc.edu;bcgsc.ca	37	chr9	74842929	74842929	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgaacgaggagcatccaTcgcacactgtcccaattcta	7	14	1	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	74842929	T	C	74842929	3	2	24	1	0	0	0	0	1	0	0	0	6361	1435	50	4	927	4	GDA	9	74842929	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10		74842929	66370502	39	1785											
DUPD1	338599	mdanderson.org;bcgsc.ca	37	chr10	76803567	76803567	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttactgtggtcgtcgcTtagcgctctgtcgatgaagg	12	10	2	1	rs16931938	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	76803567	T	G	76803567	3	3	24	1	0	0	0	0	1	0	0	0	4841	1609	56	5	261	5	DUPD1	10	76803567	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10		76803567	58731180	40	1786											
FAM35A	54537	broad.mit.edu	37	chr10	88911469	88911469	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatataactagctctaatAtgcaaatatgtggatttaaa	7	4	1	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	88911469	A	G	88911469	3	3	24	1	0	0	0	0	1	0	0	0	5602	449	16	4	360	4	FAM35A	10	88911469	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	12107902	88911469	46623278	41	1787											
C10orf91	170393	ucsc.edu	37	chr10	134261475	134261475	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgtggtagatcaagcctcAcaggcggctggaagagccag	14	12	2	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	134261475	A	G	134261475	2	3	24	1	0	0	0	0	0	0	0	1	1634	146	6	2		2	C10orf91	10	134261475	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	45350006	134261475	1273272	42	1788											
TPH1	7166	ucsc.edu	37	chr11	18044471	18044471	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactttggcatgtccagaaAgtgcatgctagaagacaaag	10	7	0	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	18044471	A	G	18044471	3	3	24	1	0	0	0	0	1	0	0	0	16506	72	3	2	308	2	TPH1	11	18044471	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		18044471	116962045	43	1789											
C1QTNF4	114900	ucsc.edu	37	chr11	47612134	47612134	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagccgtgaaggagaagaAgtaggcgccgggcacgcggc	18	11	0	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	47612134	A	G	47612134	3	3	24	1	0	0	0	0	1	0	0	0	1984	72	3	2	764	2	C1QTNF4	11	47612134	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	29567663	47612134	87394382	44	1790											
CPSF7	79869	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	61183901	61183901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactggggggcttatccacaCgagcagatgagggtacaagg	15	9	0	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	61183901	C	T	61183901	3	4	24	1	0	0	0	0	1	0	0	0	3859	536	19	1	790	1	CPSF7	11	61183901	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	13571767	61183901	73822615	45	1791											
GDPD5	81544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	75152734	75152734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtagcgcaggttcagccGctggatgtggcctctccgca	14	12	2	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	75152734	G	A	75152734	3	1	24	1	0	0	0	0	1	0	0	0	6383	1086	38	1	555	1	GDPD5	11	75152734	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	13968833	75152734	59853782	46	1792											
CCDC82	79780	broad.mit.edu	37	chr11	96117896	96117896	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttctccttgtttcatgtcTtctaacatgtatcattttca	3	9	6	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	96117896	T	C	96117896	3	2	24	1	0	0	0	0	1	0	0	0	2883	1617	56	2	1646	2	CCDC82	11	96117896	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	20965162	96117896	38888620	47	1793											
CACNA1C	775	mdanderson.org	37	chr12	2794937	2794937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacgaaaatcggcaactgaCgctcccagaggaggacaaga	12	10	0	4	rs201777030		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	2794937	C	T	2794937	3	4	24	1	0	0	0	0	1	0	0	0	2565	536	19	1	6492	1	CACNA1C	12	2794937	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		2794937	131056958	48	1794											
ATN1	1822	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	7045495	7045495	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccaactctggctccttcAccccactctctgcctcctgc	6	21	3	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	7045495	A	C	7045495	2	2	24	1	0	0	0	0	0	0	0	1	1115	146	6	5		5	ATN1	12	7045495	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	4250558	7045495	126806400	49	1795											
C1RL	51279	bcgsc.ca	37	chr12	7252316	7252316	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaacctcctccccatcctgTctgtctttccaggtccctgg	7	17	2	1	rs146214220		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	7252316	T	C	7252316	2	2	24	1	0	0	0	0	0	0	0	1	1992	1664	58	2		2	C1RL	12	7252316	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10	206821	7252316	126599579	50	1796											
PABPC3	5042	mdanderson.org	37	chr13	25670873	25670873	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaagtctcgtaaagaacgAgaagctgaacttggagctag	11	6	1	3	rs77142265		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	25670873	A	G	25670873	2	3	24	1	0	0	0	0	0	0	0	1	11444	291	11	2		2	PABPC3	13	25670873	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10		25670873	89499005	51	1797											
SERPINA10	51156	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	94756470	94756470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggcccagttccaggttgCgggagagggtctctctgagt	16	9	2	3	rs61761870	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	94756470	C	T	94756470	3	4	24	1	0	0	0	0	1	0	0	0	14184	768	27	1	889	1	SERPINA10	14	94756470	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		94756470	12593070	52	1798											
MAPKBP1	23005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	42113229	42113229	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatctggtcccaggaagcAtgggcaggaggcccttgaga	14	12	1	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	42113229	A	C	42113229	3	2	24	1	0	0	0	0	1	0	0	0	9369	217	8	5	2789	5	MAPKBP1	15	42113229	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		42113229	60418163	53	1799											
USP8	9101	mdanderson.org	37	chr15	50784990	50784990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaggttctggaccagctcTtactggacttcgtaacttag	11	9	2	0	rs146125856	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	50784990	T	C	50784990	3	2	24	1	0	0	0	0	1	0	0	0	17195	1609	56	2	2381	2	USP8	15	50784990	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	8671761	50784990	51746402	54	1800											
DENND4A	10260	bcgsc.ca	37	chr15	65982751	65982751	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaatactaaccaaacttAccttagatgatgtggtgtac	7	8	0	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	65982751	A	G	65982751	5	3	24	1	0	0	0	0	0	0	1	0	4470	405	14	2	1586	2	DENND4A	15	65982751	Splice_Site	SNP	A	TCGA-KL-8346-01A-11D-2310-10	15197761	65982751	36548641	55	1801											
ALDOA	226	broad.mit.edu	37	chr16	30079974	30079974	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccccaacaggtagacaAgggcgtggtccccctggcag	13	14	0	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	30079974	A	G	30079974	3	3	24	1	0	0	0	0	1	0	0	0	507	72	3	2	342	2	ALDOA	16	30079974	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		30079974	60274779	56	1802											
MYO15A	51168	broad.mit.edu	37	chr17	18042900	18042900	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcgccaggatgtgctggAcctgttcgtacggagccgga	16	10	0	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	18042900	A	G	18042900	3	3	24	1	0	0	0	0	1	0	0	0	10141	275	10	2	5252	2	MYO15A	17	18042900	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		18042900	63152310	57	1803											
ITGB4	3691	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr17	73727413	73727413	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tccaagatgttccagaagacGaggactgggtcctttcacat	10	10	1	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	73727413	G	T	73727413	2	4	24	1	0	0	0	0	0	0	0	1	7958	1045	37	5		5	ITGB4	17	73727413	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	55684513	73727413	7467797	58	1804											
SLC38A10	124565	ucsc.edu	37	chr17	79219503	79219503	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcagggggttaaggccaatGatgaccccatccctcggggc	15	12	0	2	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	79219503	G	A	79219503	2	1	24	1	0	0	0	0	0	0	0	1	14700	1280	45	4		4	SLC38A10	17	79219503	Silent	SNP	G	TCGA-KL-8346-01A-11D-2310-10	5492090	79219503	1975707	59	1805											
VAPA	9218	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr18	9954094	9954094	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcacattcggataaaccTggatcaacctcaactgcatc	7	12	2	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	9954094	T	A	9954094	2	1	24	1	0	0	0	0	0	0	0	1	17227	1567	55	5		5	VAPA	18	9954094	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10		9954094	68123154	60	1806											
TBXA2R	6915	broad.mit.edu	37	chr19	3595778	3595778	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggagacgccggagcacggCgcggcggaacaggatataca	16	11	0	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	3595778	C	A	3595778	3	1	24	1	0	0	0	0	1	0	0	0	15767	768	27	5	340	5	TBXA2R	19	3595778	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10		3595778	55533205	61	1807											
CACNA1A	773	broad.mit.edu	37	chr19	13372388	13372388	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgatgaggatgttgaagaCgtttttaagtgagttcacca	12	5	1	4	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	13372388	C	T	13372388	3	4	24	1	0	0	0	0	1	0	0	0	2563	536	19	1	3584	1	CACNA1A	19	13372388	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	9776610	13372388	45756595	62	1808											
ZNF676	163223	mdanderson.org	37	chr19	22363610	22363610	+	Silent	SNP	A	A	G													ttgtagggtttctctccagtAtgaattctcttatgttccat					rs201622264	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	22363610	A	G	22363610	2	3	24	1	0	0	0	0	0	0	0	1	18188	446	16	4		4	ZNF676	19	22363610	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	8991222	22363610	36765373	63	1809	49	2									
ZNF676	163223	mdanderson.org	37	chr19	22363615	22363615	+	Missense_Mutation	SNP	T	T	C													gggtttctctccagtatgaaTtctcttatgttccatgagct					rs76328545	byfrequency	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	22363615	T	C	22363615	3	2	24	1	0	0	0	0	1	0	0	0	18188	1493	52	4	866	4	ZNF676	19	22363615	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	5	22363615	36765368	64	1810	49	2									
THAP8	199745	broad.mit.edu	37	chr19	36526406	36526406	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactgtggcaggtgcagggTcctgggcaaggaccatggct	16	11	0	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	36526406	T	G	36526406	3	3	24	1	0	0	0	0	1	0	0	0	15954	1667	58	5	67	5	THAP8	19	36526406	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	14162791	36526406	22602577	65	1811											
RYR1	6261	ucsc.edu;bcgsc.ca	37	chr19	39017691	39017691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccttcaccttcagggaaAggtatgcctccttcctctgc	7	15	3	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	39017691	A	G	39017691	3	3	24	1	0	0	0	0	1	0	0	0	13863	86	3	2	10971	2	RYR1	19	39017691	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10	2491285	39017691	20111292	66	1812											
HAS1	3036	ucsc.edu;bcgsc.ca	37	chr19	52222713	52222713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcctcgtcagcgaagacctCgcggaacatgtcgaccatgt	11	13	1	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	52222713	C	T	52222713	3	4	24	1	0	0	0	0	1	0	0	0	7019	893	31	1	1304	1	HAS1	19	52222713	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	13205022	52222713	6906270	67	1813											
ZNF28	7576	mdanderson.org	37	chr19	53303182	53303182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgaaggtcttgccacacTcattacacttgtaaggtttc	8	10	2	1	rs75548544		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	53303182	T	C	53303182	3	2	24	1	0	0	0	0	1	0	0	0	17918	1551	54	2	244	2	ZNF28	19	53303182	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	1080469	53303182	5825801	68	1814											
ZGPAT	84619	ucsc.edu	37	chr20	62340424	62340424	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggaggatggctcggcgggTgtccgtgtgctttacctgta	17	9	0	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	62340424	T	G	62340424	2	3	24	1	0	0	0	0	0	0	0	1	17779	1683	59	5		5	ZGPAT	20	62340424	Silent	SNP	T	TCGA-KL-8346-01A-11D-2310-10		62340424	685096	69	1815											
CARD10	29775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	37888769	37888769	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagggcagacaccagtagCggccgcaccaaactgtaggg	14	13	0	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	37888769	C	T	37888769	2	4	24	1	0	0	0	0	0	0	0	1	2669	755	27	1		1	CARD10	22	37888769	Silent	SNP	C	TCGA-KL-8346-01A-11D-2310-10		37888769	13415797	70	1816											
MICALL1	85377	broad.mit.edu;hgsc.bcm.edu	37	chr22	38328810	38328810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatctggcttccagagggcCgtgaggatgacatgctggtg	16	8	1	3	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	38328810	C	T	38328810	3	4	24	1	0	0	0	0	1	0	0	0	9650	652	23	1	2195	1	MICALL1	22	38328810	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	440041	38328810	12975756	71	1817											
CYP2D6	1565	mdanderson.org	37	chr22	42523539	42523539	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccaaagcgctgcacctcAtgaatcacggcagtggtgta	10	13	2	1	rs28371726	bycluster;byfrequency;by1000genomes	TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	42523539	A	G	42523539	2	3	24	1	0	0	0	0	0	0	0	1	4200	214	8	4		4	CYP2D6	22	42523539	Silent	SNP	A	TCGA-KL-8346-01A-11D-2310-10	4194729	42523539	8781027	72	1818											
UBA1	7317	bcgsc.ca	37	chrX	47058254	47058254	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtccgggcctgatccaaAgccgggttctaactgctccc	11	15	1	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		G	47058254	A	G	47058254	3	3	24	1	0	0	0	0	1	0	0	0	16933	72	3	2	55	2	UBA1	23	47058254	Missense_Mutation	SNP	A	TCGA-KL-8346-01A-11D-2310-10		47058254	108212306	73	1819											
ABCB7	22	broad.mit.edu	37	chrX	74273332	74273332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttatcatggttctgcacaCggctgctctgtgtatgccac	11	11	3	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	74273332	C	T	74273332	3	4	24	1	0	0	0	0	1	0	0	0	46	536	19	1	130	1	ABCB7	23	74273332	Missense_Mutation	SNP	C	TCGA-KL-8346-01A-11D-2310-10	27215078	74273332	80997228	74	1820											
TCEAL4	79921	mdanderson.org	37	chrX	102842229	102842229	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggccccacgaagggacaTtgaagacattccttatgtgt	11	10	0	2	rs201993261		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		C	102842229	T	C	102842229	3	2	24	1	0	0	0	0	1	0	0	0	15777	1493	52	4	628	4	TCEAL4	23	102842229	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	28568897	102842229	52428331	75	1821											
SLC25A5	292	mdanderson.org	37	chrX	118603756	118603756	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggccaatgtcatcagatacTtccccacccaggctcttaac	6	15	3	1	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		A	118603756	T	A	118603756	3	1	24	1	0	0	0	0	1	0	0	0	14610	1609	56	5	250	5	SLC25A5	23	118603756	Missense_Mutation	SNP	T	TCGA-KL-8346-01A-11D-2310-10	15761527	118603756	36666804	76	1822											
MTMR1	8776	broad.mit.edu	37	chrX	149901024	149901024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaacactaggtgttgtcatGgattcatccggaaagtcaag	10	7	3	0	novel		TCGA-KL-8346-01A-11D-2310-10	TCGA-KL-8346-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2ec47b-a120-4b3b-b10d-aee09805ab33	684b307d-9053-47dc-b223-a5b491327703		T	149901024	G	T	149901024	3	4	24	1	0	0	0	0	1	0	0	0	10016	1357	47	5	912	5	MTMR1	23	149901024	Missense_Mutation	SNP	G	TCGA-KL-8346-01A-11D-2310-10	31297268	149901024	5369536	77	1823											
H6PD	9563	broad.mit.edu	37	chr1	9324408	9324408	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacacgcacctgtggctggTtgacgagcgctgcgtcccac	12	16	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	9324408	T	G	9324408	3	3	25	1	0	0	0	0	1	0	0	0	6994	1725	60	5	1870	5	H6PD	1	9324408	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		9324408	239926213	1	1824											
ZNF593	51042	mdanderson.org	37	chr1	26496651	26496651	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgacctgccagggggcggTctgcaccgctgtctggcctg	15	16	2	0	rs7087	bycluster;byfrequency;by1000genomes	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	26496651	T	C	26496651	2	2	25	1	0	0	0	0	0	0	0	1	18128	1654	58	2		2	ZNF593	1	26496651	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	17172243	26496651	222753970	2	1825											
OLFM3	118427	broad.mit.edu	37	chr1	102269842	102269842	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaagggtgacattgaaCagcacctggtggccattgtt	13	7	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	102269842	C	T	102269842	2	4	25	1	0	0	0	0	0	0	0	1	10933	465	17	4		4	OLFM3	1	102269842	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10	75773191	102269842	146980779	3	1826											
LAD1	3898	mdanderson.org	37	chr1	201358386	201358386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtgccgccgcctgcgctcGcgctcctgttcctcctcatc	10	20	1	0	rs150992211	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	201358386	G	A	201358386	2	1	25	1	0	0	0	0	0	0	0	1	8661	1074	38	1		1	LAD1	1	201358386	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	99088544	201358386	47892235	4	1827											
CR1L	1379	broad.mit.edu	37	chr1	207896964	207896964	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttttgtcttccttttaggTtcacatgatgctcttatagt	6	8	3	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	207896964	T	C	207896964	2	2	25	1	0	0	0	0	0	0	0	1	3870	1739	60	2		2	CR1L	1	207896964	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	6538578	207896964	41353657	5	1828											
OR2T12	127064	mdanderson.org	37	chr1	248458419	248458419	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagcaacagcctgcaggagGccgtcagctgcacccaggag	14	13	1	0	rs35294053	bycluster	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	248458419	G	C	248458419	2	2	25	1	0	0	0	0	0	0	0	1	11098	1190	42	5		5	OR2T12	1	248458419	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	40561455	248458419	792202	6	1829											
OR2T2	401992	bcgsc.ca	37	chr1	248616706	248616712	+	Frame_Shift_Del	DEL	TGCTGCG	TGCTGCG	-													tgagaccctgatgtatgcctGctgcgtgctgatgctgctta					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	TGCTGCG	TGCTGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		-	248616712	TGCTGCG	-	248616706	7	5	25	1	0	1	0	1	0	0	0	0	11099	1319	46	0	610	0	OR2T2	1	248616706	Frame_Shift_Del	DEL	TGCTGCG	TCGA-KM-8438-01A-11D-2310-10	158287	248616706	633915	7	1830											
NRXN1	9378	ucsc.edu;bcgsc.ca	37	chr2	51255194	51255194	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaagtcgcagaagcccTcgtcgtcgaagtagagcacg	13	12	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	51255194	T	C	51255194	3	2	25	1	0	0	0	0	1	0	0	0	10744	1551	54	2	4780	2	NRXN1	2	51255194	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		51255194	191944179	8	1831											
CTNNA2	1496	broad.mit.edu	37	chr2	80816430	80816430	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctgtaacccacgcaggCcatcatggcgcaactaccgc	8	15	2	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	80816430	C	A	80816430	3	1	25	1	0	0	0	0	1	0	0	0	4044	753	26	5	1855	5	CTNNA2	2	80816430	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	29561236	80816430	162382943	9	1832											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	179641009	179641009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagcctgttaccctgcagCggaaccttgcagtctcccct	10	15	1	0	rs140914855		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	179641009	C	T	179641009	3	4	25	1	0	0	0	0	1	0	0	0	16841	768	27	1	105746	1	TTN	2	179641009	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	98824579	179641009	63558364	10	1833											
OSGEPL1	64172	ucsc.edu	37	chr2	190618648	190618648	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagataaaacttaccagtacTgcattattttgaggtaacaa	7	6	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	190618648	T	C	190618648	2	2	25	1	0	0	0	0	0	0	0	1	11367	1567	55	2		2	OSGEPL1	2	190618648	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	10977639	190618648	52580725	11	1834											
EEF1B2	1933	broad.mit.edu	37	chr2	207025365	207025365	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagccgtgtccagcccacCgcctgccgacttgtgtcatg	11	15	1	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	207025365	C	T	207025365	3	4	25	1	0	0	0	0	1	0	0	0	4962	652	23	1	140	1	EEF1B2	2	207025365	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	16406717	207025365	36174008	12	1835											
ALPP	250	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	233244614	233244614	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggggtgccaggacatcGctacgcagctcatctccaac	12	13	2	0	rs138033708	alternate_allele	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	233244614	G	A	233244614	3	1	25	1	0	0	0	0	1	0	0	0	548	1087	38	1	643	1	ALPP	2	233244614	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	26219249	233244614	9954759	13	1836											
LRRN1	57633	bcgsc.ca	37	chr3	3887089	3887089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaaactggttaaagtccCtcaacttgccctgcaaaaag	6	11	1	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	3887089	C	A	3887089	3	1	25	1	0	0	0	0	1	0	0	0	9106	681	24	5	766	5	LRRN1	3	3887089	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		3887089	194135341	14	1837											
TRANK1	9881	bcgsc.ca	37	chr3	36898643	36898643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatggcaaggatgattttcTtcttgatgaccttggtcatt	10	6	3	3	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	36898643	T	C	36898643	3	2	25	1	0	0	0	0	1	0	0	0	16559	1609	56	2	6387	2	TRANK1	3	36898643	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	33011554	36898643	161123787	15	1838											
ITGA9	3680	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	37785427	37785427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cctctttcagaatcatgtctCcaacctcctttgtatatggc	5	13	4	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	37785427	C	A	37785427	3	1	25	1	0	0	0	0	1	0	0	0	7944	855	30	5	2421	5	ITGA9	3	37785427	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	886784	37785427	160237003	16	1839											
CCDC13	152206	hgsc.bcm.edu	37	chr3	42777231	42777231	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccgatctccatctccaGctgtcgcactttggcctccc	7	17	2	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	42777231	G	A	42777231	2	1	25	1	0	0	0	0	0	0	0	1	2790	962	34	4		4	CCDC13	3	42777231	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	4991804	42777231	155245199	17	1840											
SETD2	29072	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	47084094	47084094	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aatcttcccttctggatctcGagctgtcttccagttgggag	10	11	4	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	47084094	G	A	47084094	4	1	25	1	0	0	0	0	0	1	0	0	14228	1066	37	1	519	1	SETD2	3	47084094	Nonsense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	4306863	47084094	150938336	18	1841											
ATP11B	23200	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	182631695	182631695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttggactccatgtgctGtttcccggaaggagaagcag	14	9	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	182631695	G	T	182631695	3	4	25	1	0	0	0	0	1	0	0	0	1124	1377	48	5	3479	5	ATP11B	3	182631695	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	135547601	182631695	15390735	19	1842											
MUC4	4585	mdanderson.org	37	chr3	195512531	195512531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggacactgaggaagCgtcggtgacaggaagagagg	17	7	0	3	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	195512531	C	T	195512531	3	4	25	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195512531	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	12880836	195512531	2509899	20	1843											
MUC4	4585	mdanderson.org	37	chr3	195515052	195515052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagagaggtggcGtgacctgtggatgctgagga	19	5	0	4	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	195515052	G	C	195515052	3	2	25	1	0	0	0	0	1	0	0	0	10056	1136	40	5		5	MUC4	3	195515052	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	2521	195515052	2507378	21	1844											
DGKQ	1609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	956357	956357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacggagaacgggtcctcgcCgctgtagcccgccccccagc	12	18	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	956357	C	T	956357	3	4	25	1	0	0	0	0	1	0	0	0	4510	652	23	1	772	1	DGKQ	4	956357	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		956357	190197919	22	1845											
ARSK	153642	broad.mit.edu;hgsc.bcm.edu	37	chr5	94936601	94936601	+	Frame_Shift_Del	DEL	C	C	-													tgagtggatactctttgttgCcgttatcatcagaaacattt					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		-	94936601	C	-	94936601	7	5	25	1	0	1	0	1	0	0	0	0	1000	739	26	0	1173	0	ARSK	5	94936601	Frame_Shift_Del	DEL	C	TCGA-KM-8438-01A-11D-2310-10		94936601	85978659	23	1846	50	2									
ARSK	153642	bcgsc.ca	37	chr5	94936602	94936602	+	Frame_Shift_Del	DEL	C	C	-													gagtggatactctttgttgcCgttatcatcagaaacattta					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		-	94936602	C	-	94936602	7	5	25	1	0	1	0	1	0	0	0	0	1000	652	23	0	1174	0	ARSK	5	94936602	Frame_Shift_Del	DEL	C	TCGA-KM-8438-01A-11D-2310-10	1	94936602	85978658	24	1847	50	2									
RNF39	80352	ucsc.edu;bcgsc.ca	37	chr6	30043356	30043356	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgggcccagctcgggcgCatccatggaaagccaggatc	13	16	0	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	30043356	C	T	30043356	3	4	25	1	0	0	0	0	1	0	0	0	13586	710	25	4	1067	4	RNF39	6	30043356	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		30043356	141071711	25	1848											
HLA-DRB1	3123	mdanderson.org	37	chr6	32557477	32557477	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccatcagtgtcactgtcaGcgctgtcatgcaggagcctc	10	14	4	0	rs150644773	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	32557477	G	A	32557477	2	1	25	1	0	0	0	0	0	0	0	1	7266	962	34	4		4	HLA-DRB1	6	32557477	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	2514121	32557477	138557590	26	1849											
COL12A1	1303	broad.mit.edu;bcgsc.ca	37	chr6	75875301	75875301	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgaaattctgtatttggTctctggctgcagattttcta	8	7	3	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	75875301	T	C	75875301	3	2	25	1	0	0	0	0	1	0	0	0	3698	1667	58	2	6498	2	COL12A1	6	75875301	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	43317824	75875301	95239766	27	1850											
CRHR2	1395	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	30739613	30739613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggaggaggtgtgggaCgtagaggaggcctgggggcc	23	6	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	30739613	C	T	30739613	3	4	25	1	0	0	0	0	1	0	0	0	3901	551	19	1		1	CRHR2	7	30739613	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		30739613	128399050	28	1851											
ARPC1B	10095	bcgsc.ca	37	chr7	98988571	98988571	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggcacccaccccgtggGgctccaagatgccctttggg	14	16	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	98988571	G	T	98988571	3	4	25	1	0	0	0	0	1	0	0	0	974	1232	43	5	574	5	ARPC1B	7	98988571	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	68248958	98988571	60150092	29	1852											
CFTR	1080	broad.mit.edu	37	chr7	117188705	117188705	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttaacagggatttggggAattatttgagaaagcaaaac	10	3	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	117188705	A	T	117188705	3	4	25	1	0	0	0	0	1	0	0	0	3323	246	9	5	1258	5	CFTR	7	117188705	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	18200134	117188705	41949958	30	1853											
LMOD2	442721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	123302156	123302156	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttaaaagtcaaatagagaaCataaatttgaccaatggcag	7	5	1	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	123302156	C	A	123302156	3	1	25	1	0	0	0	0	1	0	0	0	8921	477	17	5	522	5	LMOD2	7	123302156	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	6113451	123302156	35836507	31	1854											
GCC1	79571	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	127224826	127224826	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgctactgctaacgccactCtcggaccaactggcctcttc	7	17	2	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	127224826	C	A	127224826	3	1	25	1	0	0	0	0	1	0	0	0	6339	912	32	5	1924	5	GCC1	7	127224826	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	3922670	127224826	31913837	32	1855											
SLC4A2	6522	broad.mit.edu;hgsc.bcm.edu	37	chr7	150772848	150772851	+	Frame_Shift_Del	DEL	ACTT	ACTT	-													ccaaacaccacccagatgtcActtacgtcaagaaggtgagc					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	ACTT	ACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		-	150772851	ACTT	-	150772848	7	5	25	1	0	1	0	1	0	0	0	0	14752	159	6	0	3535	0	SLC4A2	7	150772848	Frame_Shift_Del	DEL	ACTT	TCGA-KM-8438-01A-11D-2310-10	23548022	150772848	8365815	33	1856	51	2									
SLC4A2	6522	bcgsc.ca	37	chr7	150772849	150772852	+	Frame_Shift_Del	DEL	ACTT	ACTT	-													caaacaccacccagatgtcaCttacgtcaagaaggtgagcc					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	ACTT	ACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		-	150772852	ACTT	-	150772849	7	5	25	1	0	1	0	1	0	0	0	0	14752	565	20	0	3536	0	SLC4A2	7	150772849	Frame_Shift_Del	DEL	ACTT	TCGA-KM-8438-01A-11D-2310-10	1	150772849	8365814	34	1857	51	2									
MLL3	58508	mdanderson.org	37	chr7	151945349	151945349	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaattttctttctgttcctTttctccttgtagcctttcta	4	10	4	1	rs201039690		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	151945349	T	A	151945349	4	1	25	1	0	0	0	0	0	1	0	0	9699	1850	64	5	12749	5	MLL3	7	151945349	Nonsense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	1172500	151945349	7193314	35	1858											
EFHA2	286097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	16935352	16935352	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggctcatcgaagctatttCgaaatcttaaagaaaaaggt	8	6	2	1	rs150021056	bycluster	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	16935352	C	T	16935352	4	4	25	1	0	0	0	0	0	1	0	0	4981	876	31	1	642	1	EFHA2	8	16935352	Nonsense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		16935352	129428670	36	1859											
RNF122	79845	broad.mit.edu;bcgsc.ca	37	chr8	33408896	33408896	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgctcactctgtgcctggTtccgcagtttgctgggagaa	12	11	2	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	33408896	T	C	33408896	3	2	25	1	0	0	0	0	1	0	0	0	13527	1725	60	2	289	2	RNF122	8	33408896	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	16473544	33408896	112955126	37	1860											
RP1	6101	bcgsc.ca	37	chr8	55538990	55538990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catctgggtatttgagaggaAtggcaaagaagagtttagtt	13	3	1	3	rs112884043		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	55538990	A	G	55538990	3	3	25	1	0	0	0	0	1	0	0	0	13627	101	4	4	2558	4	RP1	8	55538990	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	22130094	55538990	90825032	38	1861											
FAM82B	51115	broad.mit.edu;hgsc.bcm.edu	37	chr8	87487151	87487154	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													aagtatgtctttcctaaaagAagtaagtttttgctgtagaa					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		-	87487154	AAGT	-	87487151	7	5	25	1	0	1	0	1	0	0	0	0	5681	233	9	0	160	0	FAM82B	8	87487151	Frame_Shift_Del	DEL	AAGT	TCGA-KM-8438-01A-11D-2310-10	31948161	87487151	58876871	39	1862											
RPL30	6156	ucsc.edu	37	chr8	99054067	99054067	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctggcatgcttctaatgaTgtcagagtcacctaaaaaat	7	8	4	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	99054067	T	C	99054067	3	2	25	1	0	0	0	0	1	0	0	0	13675	1464	51	4	41	4	RPL30	8	99054067	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	11566916	99054067	47309955	40	1863											
GAS1	2619	ucsc.edu	37	chr9	89561028	89561028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgctcgaggccgtcgcacaCgcagtcgttgagcagcgccg	14	16	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	89561028	C	T	89561028	3	4	25	1	0	0	0	0	1	0	0	0	6298	536	19	1	374	1	GAS1	9	89561028	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		89561028	51652403	41	1864											
NCS1	23413	ucsc.edu	37	chr9	132934986	132934986	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagcccgaagttgtggaggAgctgaccaggaagacctact	14	9	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	132934986	A	G	132934986	3	3	25	1	0	0	0	0	1	0	0	0	10319	304	11	2	46	2	NCS1	9	132934986	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	43373958	132934986	8278445	42	1865											
TUBB8	347688	mdanderson.org	37	chr10	93804	93804	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagggctccaccacggtgtcCgacaccttgggcgagggcag	15	13	0	0	rs9329304	bycluster;byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	93804	C	T	93804	2	4	25	1	0	0	0	0	0	0	0	1	16867	639	23	1		1	TUBB8	10	93804	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10		93804	135440943	43	1866											
MUC6	4588	mdanderson.org	37	chr11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggacctgtggaagagaagGgactgctccctgtaggtggg	17	7	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	1016871	G	T	1016871	3	4	25	1	0	0	0	0	1	0	0	0	10058	1232	43	5	1401	5	MUC6	11	1016871	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		1016871	133989645	44	1867											
MUC6	4588	mdanderson.org	37	chr11	1017152	1017152	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggtggaccctgtggccttGatcgtggtcggtggaggaat	18	7	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	1017152	G	C	1017152	3	2	25	1	0	0	0	0	1	0	0	0	10058	1280	45	5	1682	5	MUC6	11	1017152	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	281	1017152	133989364	45	1868											
MUC5B	727897	mdanderson.org	37	chr11	1270383	1270383	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaccccgggccacaccacGgccacctccaggaccacggc	9	22	0	0	rs61869661	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	1270383	G	A	1270383	2	1	25	1	0	0	0	0	0	0	0	1	10057	1103	39	1		1	MUC5B	11	1270383	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	253231	1270383	133736133	46	1869			1	21		2	2	19	G		5.232974e-05
MUC5B	727897	mdanderson.org	37	chr11	1270401	1270401	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggccacctccaggaccacGgccacggccacacccagcaa	9	20	0	0	rs201512746	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	1270401	G	A	1270401	2	1	25	1	0	0	0	0	0	0	0	1	10057	1103	39	1		1	MUC5B	11	1270401	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	18	1270401	133736115	47	1870			1	21		2	2	19	G		5.232974e-05
TRPM5	29850	mdanderson.org	37	chr11	2435946	2435946	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagccgccggtcactcaccAagggccagccgctcgtattt	10	17	2	0	rs4929981	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	2435946	A	G	2435946	2	3	25	1	0	0	0	0	0	0	0	1	16694	144	5	4		4	TRPM5	11	2435946	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	1165545	2435946	132570570	48	1871											
SYT9	143425	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	7324616	7324616	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacagagccaacctcgtcGgcccggtcagtaatgccttc	10	15	2	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	7324616	G	A	7324616	2	1	25	1	0	0	0	0	0	0	0	1	15582	1103	39	1		1	SYT9	11	7324616	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	4888670	7324616	127681900	49	1872											
CALCB	797	broad.mit.edu;mdanderson.org	37	chr11	15096731	15096731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgaagcaggagcaggagAcacagggctccaggtgaggt	17	8	0	3	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	15096731	A	G	15096731	3	3	25	1	0	0	0	0	1	0	0	0	2601	275	10	2	217	2	CALCB	11	15096731	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	7772115	15096731	119909785	50	1873											
FOLH1	2346	mdanderson.org	37	chr11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacagcctctgcaattccaCgcctataagcatattctgaa	5	13	2	1	rs116795343	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	49204779	C	T	49204779	3	4	25	1	0	0	0	0	1	0	0	0	6028	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	34108048	49204779	85801737	51	1874			2	22	47934378	2	2	12	N	C_A	3.197961e-05
FOLH1	2346	mdanderson.org	37	chr11	49204790	49204790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaattccacgcctataagcAtattctgaaaaaaaaaattg	5	8	1	1	rs76509850	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	49204790	A	G	49204790	2	3	25	1	0	0	0	0	0	0	0	1	6028	224	8	4		4	FOLH1	11	49204790	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	11	49204790	85801726	52	1875			2	22	47934378	2	2	12	N	C_A	3.197961e-05
OR4D10	390197	broad.mit.edu	37	chr11	59245050	59245050	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatcatggtcactgttAcctgtgaatctcgccttcac	6	14	5	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	59245050	A	G	59245050	3	3	25	1	0	0	0	0	1	0	0	0	11133	391	14	2	150	2	OR4D10	11	59245050	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	10040260	59245050	75761466	53	1876											
TBC1D10C	374403	ucsc.edu	37	chr11	67176906	67176906	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggtgctgtcagagcgggAcctgcagcgggagatcaagg	18	9	2	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	67176906	A	G	67176906	3	3	25	1	0	0	0	0	1	0	0	0	15701	275	10	2	1056	2	TBC1D10C	11	67176906	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	7931856	67176906	67829610	54	1877											
PRB1	5542	broad.mit.edu	37	chr12	11506383	11506383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggggtggtccttgtggCtttcctggaggagattggga	19	5	0	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	11506383	C	T	11506383	2	4	25	1	0	0	0	0	0	0	0	1	12531	796	28	4		4	PRB1	12	11506383	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10		11506383	122345512	55	1878											
TESC	54997	ucsc.edu	37	chr12	117513078	117513078	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acccgctgccaatcttaccgAatggtaggctgatctccact	8	14	2	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	117513078	A	G	117513078	2	3	25	1	0	0	0	0	0	0	0	1	15870	242	9	4		4	TESC	12	117513078	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	106006695	117513078	16338817	56	1879											
HNF1A	6927	broad.mit.edu;hgsc.bcm.edu	37	chr12	121431369	121431370	+	Frame_Shift_Ins	INS	-	-	G													tgattgaagagcccacaggtINSgatgagctaccaaccaagaa					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	121431370	-	G	121431369	7	5	25	1	0	1	1	0	0	0	0	0	7309	1683	59	0	583	0	HNF1A	12	121431369	Frame_Shift_Ins	INS	-	TCGA-KM-8438-01A-11D-2310-10	3918291	121431369	12420526	57	1880											
C1QTNF9	338872	mdanderson.org	37	chr13	24895797	24895797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgcagctgaagctcgGggatgaggtgtggctgcagg	18	8	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	24895797	G	A	24895797	3	1	25	1	0	0	0	0	1	0	0	0	1989	1232	43	3	903	3	C1QTNF9	13	24895797	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		24895797	90274081	58	1881											
NIN	51199	mdanderson.org;bcgsc.ca	37	chr14	51237220	51237220	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgctgcaggatctgctctctCtcttttcggagttcattttt	8	10	4	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	51237220	C	A	51237220	3	1	25	1	0	0	0	0	1	0	0	0	10496	912	32	5	5309	5	NIN	14	51237220	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10		51237220	56112320	59	1882											
MARK3	4140	broad.mit.edu	37	chr14	103941508	103941508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaagtaatcctaataaggcGgatattcctgaacgcaagaa	9	8	0	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	103941508	G	A	103941508	2	1	25	1	0	0	0	0	0	0	0	1	9391	1103	39	1		1	MARK3	14	103941508	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	52704288	103941508	3408032	60	1883											
KIF26A	26153	mdanderson.org	37	chr14	104643409	104643409	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggccagcaaggtagaagcAgcacaccgtcttgccggaca	13	13	1	1	rs2487303	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	104643409	A	G	104643409	2	3	25	1	0	0	0	0	0	0	0	1	8355	175	7	2		2	KIF26A	14	104643409	Silent	SNP	A	TCGA-KM-8438-01A-11D-2310-10	701901	104643409	2706131	61	1884											
SQRDL	58472	broad.mit.edu;hgsc.bcm.edu	37	chr15	45951304	45951305	+	Frame_Shift_Ins	INS	-	-	A													gaatcaccatggctgcccgcINSatgaagaggaaagtgggtgc					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	45951305	-	A	45951304	7	5	25	1	0	1	1	0	0	0	0	0	15229	697	25	0	185	0	SQRDL	15	45951304	Frame_Shift_Ins	INS	-	TCGA-KM-8438-01A-11D-2310-10		45951304	56580088	62	1885	52	2									
SQRDL	58472	bcgsc.ca	37	chr15	45951305	45951306	+	Frame_Shift_Ins	INS	-	-	A													aatcaccatggctgcccgcaINStgaagaggaaagtgggtgca					novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	45951306	-	A	45951305	7	5	25	1	0	1	1	0	0	0	0	0	15229	217	8	0	186	0	SQRDL	15	45951305	Frame_Shift_Ins	INS	-	TCGA-KM-8438-01A-11D-2310-10	1	45951305	56580087	63	1886	52	2									
DMXL2	23312	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	51768854	51768854	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttctgtccttagtcttctaCgatcacttaaaagaagtcct	5	10	4	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	51768854	C	A	51768854	3	1	25	1	0	0	0	0	1	0	0	0	4632	536	19	5	2285	5	DMXL2	15	51768854	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	5817549	51768854	50762538	64	1887											
CHRNB4	1143	broad.mit.edu;mdanderson.org	37	chr15	78921471	78921471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttggaagctgcagaggcGgggttcacaaagtacatgga	15	7	1	1	rs142694602	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	78921471	G	A	78921471	2	1	25	1	0	0	0	0	0	0	0	1	3422	1103	39	1		1	CHRNB4	15	78921471	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	27152617	78921471	23609921	65	1888											
ZP2	7783	broad.mit.edu	37	chr16	21218242	21218242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctggacagaagaactgatAcatgacagctccgtgtctta	10	9	1	4	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	21218242	A	G	21218242	3	3	25	1	0	0	0	0	1	0	0	0	18319	391	14	2	1897	2	ZP2	16	21218242	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10		21218242	69136511	66	1889											
DNAH9	1770	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	11833188	11833188	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccttcccactagaacatTcacctggtggccaagtggct	8	14	1	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	11833188	T	C	11833188	2	2	25	1	0	0	0	0	0	0	0	1	4645	1771	62	4		4	DNAH9	17	11833188	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10		11833188	69362022	67	1890											
CDC27	996	mdanderson.org	37	chr17	45219669	45219669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttttcccttctgaaatgatgGaagagtccaattttgtaatt	7	6	1	3	rs11491191		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	45219669	G	A	45219669	3	1	25	1	0	0	0	0	1	0	0	0	3095	1174	41	3	1206	3	CDC27	17	45219669	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	33386481	45219669	35975541	68	1891											
ABCA10	10349	ucsc.edu	37	chr17	67190540	67190540	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctcaccttctgtagaaacaGacaatccactaagaatgttt	5	10	2	3	rs200155538		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	67190540	G	A	67190540	3	1	25	1	0	0	0	0	1	0	0	0	29	942	33	4	3412	4	ABCA10	17	67190540	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	21970871	67190540	14004670	69	1892											
AATK	9625	broad.mit.edu	37	chr17	79102327	79102327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggctgtgccggcccacGtctgtggacttgaggagctg	17	10	1	1	rs56384363	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	79102327	G	A	79102327	2	1	25	1	0	0	0	0	0	0	0	1	26	1136	40	1		1	AATK	17	79102327	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	11911787	79102327	2092883	70	1893											
NFATC1	4772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	77208855	77208855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcggacgaccgcctgctgcGcccgcacgccttctaccagg	13	18	1	0	rs139150912		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	77208855	G	A	77208855	3	1	25	1	0	0	0	0	1	0	0	0	10440	1087	38	1	1566	1	NFATC1	18	77208855	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		77208855	868393	71	1894											
SLC39A3	29985	mdanderson.org	37	chr19	2732986	2732986	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagggggatcatggcgctTacggtgaccgccagcttggc	15	13	1	1	rs759073	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	2732986	T	C	2732986	2	2	25	1	0	0	0	0	0	0	0	1	14717	1741	61	4		4	SLC39A3	19	2732986	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10		2732986	56395997	72	1895											
ZNRF4	148066	mdanderson.org	37	chr19	5455976	5455976	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaccgctctctgggcgccatCgtgctgatccgccgctacga	11	16	1	1	rs61740902	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	5455976	C	T	5455976	2	4	25	1	0	0	0	0	0	0	0	1	18317	874	31	1		1	ZNRF4	19	5455976	Silent	SNP	C	TCGA-KM-8438-01A-11D-2310-10	2722990	5455976	53673007	73	1896											
MUC16	94025	mdanderson.org	37	chr19	8999443	8999443	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaggggcccagctcagtgaTgctgtgggtcagctggctca	16	10	3	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	8999443	T	C	8999443	3	2	25	1	0	0	0	0	1	0	0	0	10051	1464	51	4	2907	4	MUC16	19	8999443	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	3543467	8999443	50129540	74	1897											
RFX1	5989	mdanderson.org	37	chr19	14083761	14083761	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccccagccccagtgctggTggagctggcgacgacctggc	16	15	0	0	rs2305780	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	14083761	T	C	14083761	3	2	25	1	0	0	0	0	1	0	0	0	13354	1696	59	2	1883	2	RFX1	19	14083761	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	5084318	14083761	45045222	75	1898											
NOTCH3	4854	mdanderson.org	37	chr19	15285052	15285052	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggaacgcagtagctcctcTggcggcagcagcactgtgag	14	12	1	1	rs1044006	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	15285052	T	C	15285052	2	2	25	1	0	0	0	0	0	0	0	1	10629	1567	55	2		2	NOTCH3	19	15285052	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	1201291	15285052	43843931	76	1899											
OR10H2	26538	mdanderson.org	37	chr19	15839311	15839311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctcctgggctggtggctCggtcatggggatggtggtga	19	8	1	1	rs139469467		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	15839311	C	T	15839311	3	4	25	1	0	0	0	0	1	0	0	0	10985	893	31	1	460	1	OR10H2	19	15839311	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	554259	15839311	43289672	77	1900											
FCGBP	8857	mdanderson.org	37	chr19	40368733	40368733	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgccatgatagctgctgggGagcgtcacgtctacccgcca	13	14	2	1	rs61732623	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	40368733	G	C	40368733	2	2	25	1	0	0	0	0	0	0	0	1	5827	1161	41	5		5	FCGBP	19	40368733	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	24529422	40368733	18760250	78	1901											
LMTK3	114783	ucsc.edu	37	chr19	48994716	48994716	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggtggcggggtggggaggTgtcgggggcgctggaggcgt	28	5	0	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	48994716	T	G	48994716	2	3	25	1	0	0	0	0	0	0	0	1	8924	1683	59	5		5	LMTK3	19	48994716	Silent	SNP	T	TCGA-KM-8438-01A-11D-2310-10	8625983	48994716	10134267	79	1902											
LILRB5	10990	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	54756385	54756385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccttgggctctggccccGcagcccctgcaggacggtag	15	15	1	0	rs138683047	alternate_allele	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	54756385	G	A	54756385	3	1	25	1	0	0	0	0	1	0	0	0	8857	1087	38	1	289	1	LILRB5	19	54756385	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	5761669	54756385	4372598	80	1903											
TGM6	343641	bcgsc.ca	37	chr20	2384095	2384095	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccggcaggacctaggccccTcttacaatggctggcaggtt	12	14	1	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	2384095	T	C	2384095	3	2	25	1	0	0	0	0	1	0	0	0	15938	1551	54	2	1072	2	TGM6	20	2384095	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		2384095	60641425	81	1904											
XKR7	343702	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	30584474	30584474	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgcggcctggccttcgcGctcttcgccagcgtctacaa	11	18	2	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	30584474	G	A	30584474	2	1	25	1	0	0	0	0	0	0	0	1	17542	1074	38	1		1	XKR7	20	30584474	Silent	SNP	G	TCGA-KM-8438-01A-11D-2310-10	28200379	30584474	32441046	82	1905											
NNAT	4826	broad.mit.edu	37	chr20	36149782	36149782	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgctcatcatcggctggTacatcttccgcgtgctgctg	10	13	3	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	36149782	T	C	36149782	3	2	25	1	0	0	0	0	1	0	0	0	10587	1638	57	2	51	2	NNAT	20	36149782	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	5565308	36149782	26875738	83	1906											
RALGAPB	57148	broad.mit.edu	37	chr20	37126161	37126161	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccaccaactgttcaaggTttgtttatttttttttttct	5	9	2	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	37126161	T	C	37126161	5	2	25	1	0	0	0	0	0	0	1	0	13107	1739	60	2	565	2	RALGAPB	20	37126161	Splice_Site	SNP	T	TCGA-KM-8438-01A-11D-2310-10	976379	37126161	25899359	84	1907											
RBM11	54033	mdanderson.org	37	chr21	15599340	15599340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctcatataaatggactcAccaacaaccaagtgactctg	6	12	3	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	15599340	A	G	15599340	3	3	25	1	0	0	0	0	1	0	0	0	13204	159	6	2	590	2	RBM11	21	15599340	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10		15599340	32530555	85	1908											
KRTAP10-2	386679	mdanderson.org	37	chr21	45971109	45971109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctagactgctggcagcacGagggcgtgcaggagctggtg	18	9	0	1	rs77233671		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	45971109	G	A	45971109	3	1	25	1	0	0	0	0	1	0	0	0	8570	1059	37	1	538	1	KRTAP10-2	21	45971109	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	30371769	45971109	2158786	86	1909											
SUSD2	56241	mdanderson.org	37	chr22	24579219	24579219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgtccagccccacagacGccagtgtgatctgcaggttg	12	12	1	3	rs79349493		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	24579219	G	A	24579219	3	1	25	1	0	0	0	0	1	0	0	0	15508	1087	38	1	277	1	SUSD2	22	24579219	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10		24579219	26725347	87	1910											
PMM1	5372	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	41973907	41973907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccagccctcggggaagaCgtcaaagctgatcatgcctc	11	14	2	2	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		T	41973907	C	T	41973907	3	4	25	1	0	0	0	0	1	0	0	0	12216	536	19	1	225	1	PMM1	22	41973907	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	17394688	41973907	9330659	88	1911											
TLR7	51284	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	12904430	12904430	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgttgttataatgccccatTtccttgtgcgccgtgtaaaa	8	10	0	0	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	12904430	T	C	12904430	3	2	25	1	0	0	0	0	1	0	0	0	16060	1841	64	4	809	4	TLR7	23	12904430	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10		12904430	142366130	89	1912											
PRICKLE3	4007	broad.mit.edu	37	chrX	49034679	49034679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtgacgcccgcagtagAccttgccaacatggtagaag	12	11	0	3	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		G	49034679	A	G	49034679	3	3	25	1	0	0	0	0	1	0	0	0	12577	275	10	2	1153	2	PRICKLE3	23	49034679	Missense_Mutation	SNP	A	TCGA-KM-8438-01A-11D-2310-10	36130249	49034679	106235881	90	1913											
WNK3	65267	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	54276507	54276507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtctcacggtttcttatcGtctgattgatacagaatcgc	9	9	3	3	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	54276507	G	A	54276507	3	1	25	1	0	0	0	0	1	0	0	0	17485	1145	40	1	2805	1	WNK3	23	54276507	Missense_Mutation	SNP	G	TCGA-KM-8438-01A-11D-2310-10	5241828	54276507	100994053	91	1914											
ARR3	407	broad.mit.edu	37	chrX	69498391	69498391	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attccagcttctcccagagcTttgcagtaaccccaatcctg	6	15	1	1	novel		TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		C	69498391	T	C	69498391	3	2	25	1	0	0	0	0	1	0	0	0	983	1609	56	2	847	2	ARR3	23	69498391	Missense_Mutation	SNP	T	TCGA-KM-8438-01A-11D-2310-10	15221884	69498391	85772169	92	1915											
SERPINA7	6906	mdanderson.org;bcgsc.ca	37	chrX	105278361	105278361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaaaactttggaacaaaCaagtcaacccatctgtggga	9	8	2	0	rs1804495	byfrequency	TCGA-KM-8438-01A-11D-2310-10	TCGA-KM-8438-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	148536ce-ee2a-4952-a19d-10d6f44146b9	503f8648-a261-4fad-9062-769d85f140df		A	105278361	C	A	105278361	3	1	25	1	0	0	0	0	1	0	0	0	14191	477	17	5	346	5	SERPINA7	23	105278361	Missense_Mutation	SNP	C	TCGA-KM-8438-01A-11D-2310-10	35779970	105278361	49992199	93	1916											
COL16A1	1307	broad.mit.edu;hgsc.bcm.edu	37	chr1	32149324	32149324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcacctggggtccctggactCcccttcctggaggccctggc	12	17	1	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	32149324	C	T	32149324	3	4	26	1	0	0	0	0	1	0	0	0	3702	855	30	3	2603	3	COL16A1	1	32149324	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		32149324	217101297	1	1917											
RSBN1	54665	mdanderson.org	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		C	114354654	T	C	114354654	2	2	26	1	0	0	0	0	0	0	0	1	13791	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-KM-8439-01A-11D-2310-10	82205330	114354654	134895967	2	1918											
NBPF10	100132406	broad.mit.edu	37	chr1	145299779	145299779	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagcatggtggtatcagcCggccctttgtccagcgagaa	13	11	2	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	145299779	C	T	145299779	2	4	26	1	0	0	0	0	0	0	0	1	10271	639	23	1		1	NBPF10	1	145299779	Silent	SNP	C	TCGA-KM-8439-01A-11D-2310-10	30945125	145299779	103950842	3	1919											
FLG	2312	mdanderson.org	37	chr1	152284576	152284576	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acccctctgattgtccctggCctgcctgtgagtgtctagag	11	13	2	3	rs71585892	alternate_allele	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	152284576	C	A	152284576	3	1	26	1	0	0	0	0	1	0	0	0	5971	739	26	5	9403	5	FLG	1	152284576	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	6984797	152284576	96966045	4	1920											
KISS1	3814	mdanderson.org	37	chr1	204159787	204159787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggacaggcccggctgctggGggctcccggagctctcgggg	19	14	1	0	rs4889	bycluster;byfrequency;by1000genomes	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		C	204159787	G	C	204159787	3	2	26	1	0	0	0	0	1	0	0	0	8388	1232	43	5	178	5	KISS1	1	204159787	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	51875211	204159787	45090834	5	1921											
FMN2	56776	mdanderson.org	37	chr1	240370995	240370995	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccgccccctcttcccggGgcaggcataccccttcctcc	7	23	1	0	rs201866430	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	240370995	G	A	240370995	2	1	26	1	0	0	0	0	0	0	0	1	5999	1219	43	3		3	FMN2	1	240370995	Silent	SNP	G	TCGA-KM-8439-01A-11D-2310-10	36211208	240370995	8879626	6	1922											
FMN2	56776	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	240371393	240371393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctccccctctacccggagCgggcataccccctccgcccc	7	24	1	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	240371393	C	T	240371393	3	4	26	1	0	0	0	0	1	0	0	0	5999	768	27	1	3299	1	FMN2	1	240371393	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	398	240371393	8879228	7	1923											
EPT1	85465	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	26608003	26608003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaacagcttttgccaacaGtacagtaagatttttttctt	7	7	1	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	26608003	G	A	26608003	3	1	26	1	0	0	0	0	1	0	0	0	5238	1029	36	4	938	4	EPT1	2	26608003	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		26608003	216591370	8	1924											
DUSP11	8446	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	74007178	74007178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgccctcaatgccaggataaGaccctaaacaggaaaagact	8	12	1	2	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	74007178	G	A	74007178	3	1	26	1	0	0	0	0	1	0	0	0	4848	942	33	4	1104	4	DUSP11	2	74007178	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	47399175	74007178	169192195	9	1925											
KCMF1	56888	broad.mit.edu;hgsc.bcm.edu	37	chr2	85262268	85262268	+	Frame_Shift_Del	DEL	C	C	-													ttctgaacatgcagaaacatCaacagaagtggtaagtgaag					novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		-	85262268	C	-	85262268	7	5	26	1	0	1	0	1	0	0	0	0	8061	838	29	0	324	0	KCMF1	2	85262268	Frame_Shift_Del	DEL	C	TCGA-KM-8439-01A-11D-2310-10	11255090	85262268	157937105	10	1926	53	2									
KCMF1	56888	bcgsc.ca	37	chr2	85262269	85262269	+	Frame_Shift_Del	DEL	C	C	-													tctgaacatgcagaaacatcAacagaagtggtaagtgaagc					novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		-	85262269	C	-	85262269	7	5	26	1	0	1	0	1	0	0	0	0	8061	117	5	0	325	0	KCMF1	2	85262269	Frame_Shift_Del	DEL	C	TCGA-KM-8439-01A-11D-2310-10	1	85262269	157937104	11	1927	53	2									
POTEE	445582	mdanderson.org	37	chr2	132021475	132021475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaaccccaaggccaaccGcgagaagatgacccagatca	9	15	1	5	rs11546936		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	132021475	G	A	132021475	3	1	26	1	0	0	0	0	1	0	0	0	12344	1087	38	1	2505	1	POTEE	2	132021475	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	46759206	132021475	111177898	12	1928											
MUC4	4585	mdanderson.org	37	chr3	195511403	195511403	+	Missense_Mutation	SNP	C	C	T													ggtgacatgaagaggggtggCgtgacctgtggatgctgagg					rs78846267		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	195511403	C	T	195511403	3	4	26	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195511403	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		195511403	2511027	13	1929	54	2									
MUC4	4585	mdanderson.org	37	chr3	195511412	195511412	+	Missense_Mutation	SNP	T	T	A													aagaggggtggcgtgacctgTggatgctgaggaagggctag					rs199878638		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	195511412	T	A	195511412	3	1	26	1	0	0	0	0	1	0	0	0	10056	1696	59	5		5	MUC4	3	195511412	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10	9	195511412	2511018	14	1930	54	2									
MUC4	4585	mdanderson.org	37	chr3	195515126	195515126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggatactgaggaagtgtCggtgacaggaagagaggtgg	19	3	0	3	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	195515126	C	T	195515126	3	4	26	1	0	0	0	0	1	0	0	0	10056	884	31	1		1	MUC4	3	195515126	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	3714	195515126	2507304	15	1931											
LRBA	987	broad.mit.edu	37	chr4	151842427	151842427	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctttaacacagacagcaActtcccagcatgtggaggct	9	11	0	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	151842427	A	G	151842427	2	3	26	1	0	0	0	0	0	0	0	1	9003	40	2	2		2	LRBA	4	151842427	Silent	SNP	A	TCGA-KM-8439-01A-11D-2310-10		151842427	39311849	16	1932											
DND1	373863	mdanderson.org	37	chr5	140052407	140052407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccacgcgctggaacagcGggataagctggtgctcgtac	15	12	0	0	rs75523379		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	140052407	G	A	140052407	3	1	26	1	0	0	0	0	1	0	0	0	4703	1116	39	1	842	1	DND1	5	140052407	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		140052407	40862853	17	1933											
PCDHA5	56143	hgsc.bcm.edu	37	chr5	140201458	140201458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagcggccagctccactactCgatcccggaggaagccaaac	11	15	0	0	rs144627570		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	140201458	C	T	140201458	3	4	26	1	0	0	0	0	1	0	0	0	11606	893	31	1	100	1	PCDHA5	5	140201458	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	149051	140201458	40713802	18	1934											
FAM8A1	51439	mdanderson.org	37	chr6	17602863	17602863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggcccacagatttatggCagagatggtggatttcttta	11	7	1	2	rs80120441	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	17602863	C	T	17602863	3	4	26	1	0	0	0	0	1	0	0	0	5698	710	25	4	761	4	FAM8A1	6	17602863	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		17602863	153512204	19	1935			1	23		3	3	48	N	G_C_A	2.38677e-09
FAM8A1	51439	mdanderson.org	37	chr6	17602895	17602895	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttctttattctcttctttAtaaaagcaaccattgtctta	2	8	4	0	rs79412549	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	17602895	A	G	17602895	3	3	26	1	0	0	0	0	1	0	0	0	5698	449	16	4	793	4	FAM8A1	6	17602895	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	32	17602895	153512172	20	1936			1	23		3	3	48	N	G_C_A	2.38677e-09
FAM8A1	51439	mdanderson.org	37	chr6	17602910	17602910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttataaaagcaaccattGtcttaagcattatgcacctc	4	10	2	0	rs144013791	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	17602910	G	A	17602910	3	1	26	1	0	0	0	0	1	0	0	0	5698	1377	48	4	808	4	FAM8A1	6	17602910	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	15	17602910	153512157	21	1937			1	23		3	3	48	N	G_C_A	2.38677e-09
MUC21	394263	mdanderson.org	37	chr6	30955201	30955201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacagtgtccagtgggGccagcactgccaccaattct	10	15	1	0	rs2508018		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	30955201	G	A	30955201	3	1	26	1	0	0	0	0	1	0	0	0	10055	1203	42	3	1255	3	MUC21	6	30955201	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	13352291	30955201	140159866	22	1938											
FAM26F	441168	mdanderson.org	37	chr6	116783330	116783330	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacgtggcgcctgctcaccGgatgctgctccagcgcccgc	13	18	1	0	rs3087828		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	116783330	G	A	116783330	3	1	26	1	0	0	0	0	1	0	0	0	5600	1117	39	1	240	1	FAM26F	6	116783330	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	85828129	116783330	54331737	23	1939											
EYA4	2070	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	133789819	133789819	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgatggcacaccctcttcaaCctctacttatcagttgcagg	7	14	4	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	133789819	C	A	133789819	3	1	26	1	0	0	0	0	1	0	0	0	5371	507	18	5	958	5	EYA4	6	133789819	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	17006489	133789819	37325248	24	1940											
CYP2W1	54905	mdanderson.org	37	chr7	1023013	1023013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgcaacaggaccggtccCtgatggaggtaagtcaggga	15	9	1	1	rs2272375	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	1023013	C	T	1023013	2	4	26	1	0	0	0	0	0	0	0	1	4207	680	24	4		4	CYP2W1	7	1023013	Silent	SNP	C	TCGA-KM-8439-01A-11D-2310-10		1023013	158115650	25	1941											
TNRC18	84629	ucsc.edu	37	chr7	5401630	5401630	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtccagctccagggcgTccatgtcctccagggaggac	14	13	0	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		C	5401630	T	C	5401630	3	2	26	1	0	0	0	0	1	0	0	0	16443	1667	58	2	4548	2	TNRC18	7	5401630	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10	4378617	5401630	153737033	26	1942											
WIPF3	644150	broad.mit.edu	37	chr7	29924113	29924114	+	Frame_Shift_Ins	INS	-	-	C													taaatcccccagcttccaggINSccccaccgcagaaggccggt					novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		C	29924114	-	C	29924113	7	5	26	1	0	1	1	0	0	0	0	0	17475	1203	42	0	1017	0	WIPF3	7	29924113	Frame_Shift_Ins	INS	-	TCGA-KM-8439-01A-11D-2310-10	24522483	29924113	129214550	27	1943											
CALU	813	broad.mit.edu	37	chr7	128407599	128407599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtttcgggataagaacCgtgatgggaagatggacaag	15	4	0	4	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	128407599	C	T	128407599	3	4	26	1	0	0	0	0	1	0	0	0	2619	652	23	1	949	1	CALU	7	128407599	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	98483486	128407599	30731064	28	1944											
IRF5	3663	ucsc.edu	37	chr7	128586594	128586594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactcttttggtgcaggagAggaggaggaagaagaggaag	17	3	1	3	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	128586594	A	G	128586594	3	3	26	1	0	0	0	0	1	0	0	0	7894	304	11	2	435	2	IRF5	7	128586594	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	178995	128586594	30552069	29	1945											
CNTLN	54875	broad.mit.edu	37	chr9	17409364	17409364	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcccagaaaataagtcctAcggaagatggaaaagaccag	9	9	0	3	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	17409364	A	G	17409364	3	3	26	1	0	0	0	0	1	0	0	0	3668	391	14	2	2781	2	CNTLN	9	17409364	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10		17409364	123804067	30	1946											
HSPA14	51182	broad.mit.edu	37	chr10	14890641	14890641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagctcagaaatacatcgcGgaaagtaaatgtttagtgag	10	6	1	2	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	14890641	G	A	14890641	2	1	26	1	0	0	0	0	0	0	0	1	7467	1103	39	1		1	HSPA14	10	14890641	Silent	SNP	G	TCGA-KM-8439-01A-11D-2310-10		14890641	120644106	31	1947											
ECHS1	1892	hgsc.bcm.edu	37	chr10	135186806	135186806	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcctcagcgggccgcggAcgcaggacagcaggacacgc	18	14	1	0	rs1130833		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	135186806	A	G	135186806	3	3	26	1	0	0	0	0	1	0	0	0	4933	275	10	2	872	2	ECHS1	10	135186806	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	120296165	135186806	347941	32	1948											
TUB	7275	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	8120345	8120345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcactgtttatgacaatGgagtcaaccctcagaaggcc	9	10	3	2	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	8120345	G	A	8120345	3	1	26	1	0	0	0	0	1	0	0	0	16848	1349	47	4	1284	4	TUB	11	8120345	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		8120345	126886171	33	1949											
OR5M10	390167	broad.mit.edu	37	chr11	56344713	56344713	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaggataagtgaaaggtcAgcagtgtctgagagagccca	14	6	2	4	rs140389540		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	56344713	A	T	56344713	3	4	26	1	0	0	0	0	1	0	0	0	11252	188	7	5	466	5	OR5M10	11	56344713	Missense_Mutation	SNP	A	TCGA-KM-8439-01A-11D-2310-10	48224368	56344713	78661803	34	1950											
MS4A14	84689	broad.mit.edu	37	chr11	60165391	60165391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgcacttaattacatcGgtttctcccaaagacttccc	4	12	1	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	60165391	G	A	60165391	3	1	26	1	0	0	0	0	1	0	0	0	9936	1116	39	1	211	1	MS4A14	11	60165391	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10	3820678	60165391	74841125	35	1951											
PLCB3	5331	mdanderson.org	37	chr11	64026685	64026685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgccctgagcgagagctcCgcggccaccgagccctcctc	11	19	1	2	rs28395882	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	64026685	C	T	64026685	2	4	26	1	0	0	0	0	0	0	0	1	12109	639	23	1		1	PLCB3	11	64026685	Silent	SNP	C	TCGA-KM-8439-01A-11D-2310-10	3861294	64026685	70979831	36	1952											
GOLGA3	2802	broad.mit.edu	37	chr12	133357472	133357472	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcatctggcgatcctccTcttctttgcgctgcaaaact	7	14	4	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		C	133357472	T	C	133357472	3	2	26	1	0	0	0	0	1	0	0	0	6610	1551	54	2	1030	2	GOLGA3	12	133357472	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10		133357472	494423	37	1953											
TPP2	7174	broad.mit.edu	37	chr13	103328696	103328696	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaataaaatgtatgggagAggccttaaatttgcaactaa	9	4	0	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	103328696	A	G	103328696	2	3	26	1	0	0	0	0	0	0	0	1	16517	301	11	2		2	TPP2	13	103328696	Silent	SNP	A	TCGA-KM-8439-01A-11D-2310-10		103328696	11841182	38	1954											
ZNF629	23361	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr16	30794552	30794552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctcgcgcaggtgagtcCgctggtgcttgatgagggtg	18	9	0	3	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	30794552	C	T	30794552	3	4	26	1	0	0	0	0	1	0	0	0	18158	652	23	1	1516	1	ZNF629	16	30794552	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10		30794552	59560201	39	1955											
CHST6	4166	broad.mit.edu	37	chr16	75512651	75512651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcctcagagtacacaggcCggtagcccagcagctgcagc	12	15	1	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	75512651	C	T	75512651	3	4	26	1	0	0	0	0	1	0	0	0	3437	652	23	1	115	1	CHST6	16	75512651	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	44718099	75512651	14842102	40	1956											
GUCY2D	3000	mdanderson.org	37	chr17	7906519	7906519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagccccccgccctctccGccgtgttcacggtgggggtc	13	18	2	0	rs61749665	byfrequency	TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	7906519	G	T	7906519	3	4	26	1	0	0	0	0	1	0	0	0	6955	1087	38	5	156	5	GUCY2D	17	7906519	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		7906519	73288691	41	1957											
WNT3	7473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	44847153	44847153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtagccgggctcaccgtgCggcccgcctcgttgttgtgc	16	14	1	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	44847153	C	T	44847153	3	4	26	1	0	0	0	0	1	0	0	0	17494	768	27	1	491	1	WNT3	17	44847153	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	36940634	44847153	36348057	42	1958											
LAMA3	3909	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	21404467	21404467	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tccctggaaatggttttgcaGacccattttcaatcacacca	6	12	2	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	21404467	G	T	21404467	3	4	26	1	0	0	0	0	1	0	0	0	8669	942	33	5	2591	5	LAMA3	18	21404467	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		21404467	56672781	43	1959											
TSHZ1	10194	broad.mit.edu	37	chr18	72997839	72997839	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctccgcccccacccccacAccccccacctgccccgtcag	5	27	1	0	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		C	72997839	A	C	72997839	2	2	26	1	0	0	0	0	0	0	0	1	16728	146	6	5		5	TSHZ1	18	72997839	Silent	SNP	A	TCGA-KM-8439-01A-11D-2310-10	51593372	72997839	5079409	44	1960											
UPF1	5976	ucsc.edu	37	chr19	18976950	18976950	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttaccagcatggcggggTgacggggctgtcccagtatt	16	10	0	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		G	18976950	T	G	18976950	3	3	26	1	0	0	0	0	1	0	0	0	17109	1696	59	5	3425	5	UPF1	19	18976950	Missense_Mutation	SNP	T	TCGA-KM-8439-01A-11D-2310-10		18976950	40152033	45	1961											
SOX12	6666	mdanderson.org	37	chr20	307249	307249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcggaggacgaggagccGgaggaagaggaggaggaggc	22	7	0	1	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	307249	G	A	307249	2	1	26	1	0	0	0	0	0	0	0	1	15041	1103	39	1		1	SOX12	20	307249	Silent	SNP	G	TCGA-KM-8439-01A-11D-2310-10		307249	62718271	46	1962											
GDF5	8200	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	34021967	34021967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggggtgcgatgatccagtCgtcccagcccatgtccttga	12	12	0	2	novel		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		T	34021967	C	T	34021967	3	4	26	1	0	0	0	0	1	0	0	0	6372	884	31	1	263	1	GDF5	20	34021967	Missense_Mutation	SNP	C	TCGA-KM-8439-01A-11D-2310-10	33714718	34021967	29003553	47	1963											
PKDREJ	10343	mdanderson.org;bcgsc.ca	37	chr22	46656278	46656278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagctaaacccacctgtcGtcttcttcaaggacccatca	6	14	4	0	rs117787407		TCGA-KM-8439-01A-11D-2310-10	TCGA-KM-8439-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d3b0b87-5fc5-4d09-9c63-4d5fc4bc46d0	1f433ac7-b321-46a9-87ac-c72ad5b1b4e5		A	46656278	G	A	46656278	3	1	26	1	0	0	0	0	1	0	0	0	12050	1145	40	1	3823	1	PKDREJ	22	46656278	Missense_Mutation	SNP	G	TCGA-KM-8439-01A-11D-2310-10		46656278	4648288	48	1964											
CR1	1378	mdanderson.org	37	chr1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atagcagtgttccagtgtgtGaacgtgagtagaaagaacta	12	5	0	4	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	207787831	G	T	207787831	4	4	27	1	0	0	0	0	0	1	0	0	3869	1291	45	5	6816	5	CR1	1	207787831	Nonsense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10		207787831	41462790	1	1965											
EXOC8	149371	ucsc.edu;bcgsc.ca	37	chr1	231473244	231473244	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggctgagctggtacatcTcgctctccaggtaggagatc	12	10	2	2	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	231473244	T	C	231473244	3	2	27	1	0	0	0	0	1	0	0	0	5350	1551	54	2	1933	2	EXOC8	1	231473244	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10	23685413	231473244	17777377	2	1966											
BIRC6	57448	broad.mit.edu;mdanderson.org	37	chr2	32694461	32694461	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgttttctttcttgtaatAggacactctgttcctgcagt	7	9	3	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	32694461	A	G	32694461	5	3	27	1	0	0	0	0	0	0	1	0	1443	434	15	2	6244	2	BIRC6	2	32694461	Splice_Site	SNP	A	TCGA-KM-8440-01A-11D-2310-10		32694461	210504912	3	1967											
CTNNA2	1496	broad.mit.edu;mdanderson.org	37	chr2	80816475	80816475	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaggcaaaaatagctgAgcaggtggagatattccatc	13	6	0	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	80816475	A	T	80816475	3	4	27	1	0	0	0	0	1	0	0	0	4044	304	11	5	1900	5	CTNNA2	2	80816475	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	48122014	80816475	162382898	4	1968											
RNF181	51255	ucsc.edu	37	chr2	85823695	85823695	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggttggtagtagattgggAccaccacctgcctccaccag	13	12	0	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	85823695	A	G	85823695	3	3	27	1	0	0	0	0	1	0	0	0	13560	275	10	2	146	2	RNF181	2	85823695	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	5007220	85823695	157375678	5	1969											
RBMS3	27303	broad.mit.edu;bcgsc.ca	37	chr3	29628650	29628650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcagccgcacagaaagCggtagcatctctcaaggcaa	10	13	2	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	29628650	C	T	29628650	3	4	27	1	0	0	0	0	1	0	0	0	13242	768	27	1	367	1	RBMS3	3	29628650	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		29628650	168393780	6	1970											
RAD54L2	23132	broad.mit.edu	37	chr3	51690165	51690165	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgcaggagtccttgtgCagaaggtggtcaccacgaca	14	10	1	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	51690165	C	T	51690165	4	4	27	1	0	0	0	0	0	1	0	0	13086	711	25	4	3275	4	RAD54L2	3	51690165	Nonsense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	22061515	51690165	146332265	7	1971											
MUC4	4585	mdanderson.org	37	chr3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagaggggtggCgtgacctgtggatgctgagg	21	5	0	4	rs11915935		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	195505787	C	T	195505787	3	4	27	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195505787	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	143815622	195505787	2516643	8	1972			1	24		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	chr3	195505886	195505886	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaggaagaggggtggtgtCacctgtggatgctgaggaag	19	5	1	2	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	195505886	C	G	195505886	3	3	27	1	0	0	0	0	1	0	0	0	10056	826	29	5		5	MUC4	3	195505886	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	99	195505886	2516544	9	1973			1	24		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	chr3	195509832	195509832	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggtggcatgacctgtggaCactgaggaagcgtcggtgac	18	8	0	3	rs199909366		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	195509832	C	T	195509832	2	4	27	1	0	0	0	0	0	0	0	1	10056	465	17	4		4	MUC4	3	195509832	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	3946	195509832	2512598	10	1974			1	24		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	chr3	195509843	195509843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggacactgaggaagCgtcggtgacaggaagagagg	17	7	0	3	rs200739317		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	195509843	C	T	195509843	3	4	27	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195509843	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	11	195509843	2512587	11	1975			1	24		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	chr3	195512483	195512483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggacactgaggaagCgtcggtgacaggaagagggg	18	7	0	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	195512483	C	T	195512483	3	4	27	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195512483	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	2640	195512483	2509947	12	1976			1	24		6	6	7994	N	G_C	1.01151e-11
MUC4	4585	mdanderson.org	37	chr3	195513780	195513780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtggatactgaggaagcGtcggtgacaggaagaggggt	18	6	0	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	195513780	G	A	195513780	2	1	27	1	0	0	0	0	0	0	0	1	10056	1136	40	1		1	MUC4	3	195513780	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10	1297	195513780	2508650	13	1977			1	24		6	6	7994	N	G_C	1.01151e-11
DGKQ	1609	broad.mit.edu	37	chr4	961063	961063	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttgcccccagcccaggcGtcacaggcctgagaggaagg	14	15	1	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	961063	G	A	961063	2	1	27	1	0	0	0	0	0	0	0	1	4510	1136	40	1		1	DGKQ	4	961063	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10		961063	190193213	14	1978											
KLB	152831	mdanderson.org	37	chr4	39448542	39448542	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacgaccggcagttcaggccCtcacagcgcggggccgtgtc	14	15	2	0	rs7685429	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	39448542	C	G	39448542	2	3	27	1	0	0	0	0	0	0	0	1	8393	668	24	5		5	KLB	4	39448542	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	38487479	39448542	151705734	15	1979											
NUDT9	53343	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr4	88379168	88379168	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagctgactgccatgcgTtgtagctgatggtctccgtg	13	10	1	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	88379168	T	C	88379168	2	2	27	1	0	0	0	0	0	0	0	1	10825	1722	60	2		2	NUDT9	4	88379168	Silent	SNP	T	TCGA-KM-8440-01A-11D-2310-10	48930626	88379168	102775108	16	1980											
H2AFZ	3015	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr4	100870503	100870503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacacgtccatgactggtcGtcctagattttaggtgtcga	10	11	0	2	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	100870503	G	T	100870503	3	4	27	1	0	0	0	0	1	0	0	0	6989	1145	40	5	276	5	H2AFZ	4	100870503	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	12491335	100870503	90283773	17	1981											
FRG1	2483	mdanderson.org	37	chr4	190874235	190874235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaatagttgatgagggccCtagtcctccagagcagttta	10	10	0	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	190874235	C	T	190874235	3	4	27	1	0	0	0	0	1	0	0	0	6098	681	24	4	286	4	FRG1	4	190874235	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	90003732	190874235	280041	18	1982											
TCERG1	10915	hgsc.bcm.edu	37	chr5	145838641	145838641	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggctcaggctcaggcCcaggcccaggcccaggccca	13	19	2	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	145838641	C	T	145838641	2	4	27	1	0	0	0	0	0	0	0	1	15789	610	22	3		3	TCERG1	5	145838641	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10		145838641	35076619	19	1983											
MUC21	394263	mdanderson.org	37	chr6	30955119	30955119	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtccagtggggccagcacAgccaccacctctgagtccag	12	15	1	1	rs55918804	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	30955119	A	T	30955119	2	4	27	1	0	0	0	0	0	0	0	1	10055	175	7	5		5	MUC21	6	30955119	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10		30955119	140159948	20	1984											
KCNK16	83795	ucsc.edu;bcgsc.ca	37	chr6	39290273	39290273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cataggccagcagcaggggcAgcacccggccaccccagcag	13	17	0	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	39290273	A	G	39290273	3	3	27	1	0	0	0	0	1	0	0	0	8124	188	7	2	1294	2	KCNK16	6	39290273	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	8335154	39290273	131824794	21	1985											
POM121C	100101267	broad.mit.edu	37	chr7	75055685	75055686	+	Frame_Shift_Ins	INS	-	-	CC													ccggtgtctgggagcgggatINSgaggctgggctagagaaggg					novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		CC	75055686	-	CC	75055685	7	5	27	1	0	1	1	0	0	0	0	0	12320	1451	51	0	2464	0	POM121C	7	75055685	Frame_Shift_Ins	INS	-	TCGA-KM-8440-01A-11D-2310-10		75055685	84082978	22	1986											
TRIM4	89122	broad.mit.edu	37	chr7	99514382	99514382	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctcttccattcatccacGtggatgtcaaagttacctgt	6	12	3	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	99514382	G	A	99514382	2	1	27	1	0	0	0	0	0	0	0	1	16619	1136	40	1		1	TRIM4	7	99514382	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10	24458697	99514382	59624281	23	1987											
KLF14	136259	mdanderson.org	37	chr7	130418525	130418525	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatcgggtcggagaagccGgacgaggcgcgtggagcttc	20	9	0	1	rs76603546	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	130418525	G	A	130418525	2	1	27	1	0	0	0	0	0	0	0	1	8403	1103	39	1		1	KLF14	7	130418525	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10	30904143	130418525	28720138	24	1988											
PRSS1	5644	mdanderson.org	37	chr7	142460779	142460779	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaggagttgtctcctggggtGatggctgtgcccagaagaac	15	8	1	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	142460779	G	T	142460779	3	4	27	1	0	0	0	0	1	0	0	0	12703	1290	45	5	670	5	PRSS1	7	142460779	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	12042254	142460779	16677884	25	1989											
MLL3	58508	mdanderson.org	37	chr7	151962290	151962290	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actgcacagtttgcatcttcCttcgctataattaacagtga	6	10	1	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	151962290	C	G	151962290	3	3	27	1	0	0	0	0	1	0	0	0	9699	680	24	5	13926	5	MLL3	7	151962290	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	9501511	151962290	7176373	26	1990											
EEF1D	1936	mdanderson.org	37	chr8	144671244	144671244	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgaggcaccaggccacCcgcagggcctcggcagcgtg	15	16	0	0	rs4874160	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	144671244	C	A	144671244	2	1	27	1	0	0	0	0	0	0	0	1	4963	610	22	5		5	EEF1D	8	144671244	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10		144671244	1692778	27	1991											
ZNF658	26149	mdanderson.org	37	chr9	40775035	40775035	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgatcaactttaaaataCcctaaaatgagaaaaattga	5	5	1	3	rs62561230		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	40775035	C	T	40775035	2	4	27	1	0	0	0	0	0	0	0	1	18174	521	18	3		3	ZNF658	9	40775035	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10		40775035	100438396	28	1992											
TTC16	158248	mdanderson.org	37	chr9	130487157	130487157	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcaggagaagatgggcTtctgcgagcagaggcgcaag	17	8	1	3	rs77630455	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	130487157	T	G	130487157	3	3	27	1	0	0	0	0	1	0	0	0	16789	1609	56	5	1274	5	TTC16	9	130487157	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10	89712122	130487157	10726274	29	1993											
TUBB8	347688	mdanderson.org	37	chr10	94006	94006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgactccatcagctccgcgCcttcggtgtagtgtcccttg	10	15	1	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	94006	C	T	94006	3	4	27	1	0	0	0	0	1	0	0	0	16867	739	26	3	1012	3	TUBB8	10	94006	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		94006	135440741	30	1994											
CELF2	10659	hgsc.bcm.edu	37	chr10	11207550	11207550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acagatcccccggtcatggtCggaaaaggagctgaaagaac	12	10	1	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	11207550	C	T	11207550	3	4	27	1	0	0	0	0	1	0	0	0	3245	893	31	1	239	1	CELF2	10	11207550	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	11113544	11207550	124327197	31	1995											
PDCD11	22984	ucsc.edu	37	chr10	105160258	105160258	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcagcaagtccgcaagAgagaagtttgaaatccttag	11	7	0	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	105160258	A	G	105160258	2	3	27	1	0	0	0	0	0	0	0	1	11696	301	11	2		2	PDCD11	10	105160258	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10	93952708	105160258	30374489	32	1996											
KRTAP5-4	387267	hgsc.bcm.edu	37	chr11	1643255	1643255	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccacagccagagccacaGcccccacagccggagccaca	8	22	0	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	1643255	G	A	1643255	2	1	27	1	0	0	0	0	0	0	0	1	8625	958	34	4		4	KRTAP5-4	11	1643255	Silent	SNP	G	TCGA-KM-8440-01A-11D-2310-10		1643255	133363261	33	1997											
VWCE	220001	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	61026257	61026257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggtggtgggagaaagcaCgcgaggcccgaggagggtga	21	6	0	3	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	61026257	C	T	61026257	3	4	27	1	0	0	0	0	1	0	0	0	17351	536	19	1	113	1	VWCE	11	61026257	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	59383002	61026257	73980259	34	1998											
AHNAK	79026	broad.mit.edu	37	chr11	62294617	62294617	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcaatgtcaatgtctggCccactgacatccacatgtgg	8	14	3	1	rs143003772		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	62294617	C	T	62294617	2	4	27	1	0	0	0	0	0	0	0	1	414	726	26	3		3	AHNAK	11	62294617	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	1268360	62294617	72711899	35	1999											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825362	95825362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgttgctgttgctgCtgctgctgctgttgctgctg	14	9	0	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	95825362	C	T	95825362	2	4	27	1	0	0	0	0	0	0	0	1	9283	796	28	4		4	MAML2	11	95825362	Silent	SNP	C	TCGA-KM-8440-01A-11D-2310-10	33530745	95825362	39181154	36	2000											
MLL2	8085	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	49436390	49436390	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcctgggtaggagtccaTtgggctgctggagggcagat	19	7	0	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	49436390	T	C	49436390	3	2	27	1	0	0	0	0	1	0	0	0	9698	1493	52	4	10904	4	MLL2	12	49436390	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10		49436390	84415505	37	2001											
RBM19	9904	hgsc.bcm.edu;ucsc.edu	37	chr12	114261040	114261040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccagctcacagctgaaGggtctgctcctcgctgtcgc	13	14	2	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	114261040	G	T	114261040	3	4	27	1	0	0	0	0	1	0	0	0	13213	1000	35	5	14	5	RBM19	12	114261040	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	64824650	114261040	19590855	38	2002											
FOXO1	2308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	41134356	41134356	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgctggattggccatatgtAtatttttggtagtttgggct	12	4	0	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	41134356	A	T	41134356	4	4	27	1	0	0	0	0	0	1	0	0	6074	456	16	5	699	5	FOXO1	13	41134356	Nonsense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10		41134356	74035522	39	2003											
DZIP1	22873	bcgsc.ca	37	chr13	96293631	96293631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgcactcttccttgagcGtcttgatctcccccgcctgc	8	16	3	2	rs9561921	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	96293631	G	A	96293631	3	1	27	1	0	0	0	0	1	0	0	0	4900	1145	40	1	2164	1	DZIP1	13	96293631	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	55159275	96293631	18876247	40	2004											
DDX24	57062	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	94524209	94524209	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gactttaggaatatccagacCccgagctgccacatctgttg	9	12	1	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	94524209	C	A	94524209	3	1	27	1	0	0	0	0	1	0	0	0	4383	623	22	5	647	5	DDX24	14	94524209	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		94524209	12825331	41	2005											
SLC24A1	9187	broad.mit.edu	37	chr15	65916547	65916547	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttatcagcaccttaggagAccccggggcctttcctcatt	8	14	2	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	65916547	A	G	65916547	2	3	27	1	0	0	0	0	0	0	0	1	14563	272	10	2		2	SLC24A1	15	65916547	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10		65916547	36614845	42	2006											
CSK	1445	broad.mit.edu	37	chr15	75093415	75093415	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtggaggagaagggcgggcTctacatcgtcactgagtaca	15	9	2	2	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	75093415	T	C	75093415	3	2	27	1	0	0	0	0	1	0	0	0	3974	1551	54	2	815	2	CSK	15	75093415	Missense_Mutation	SNP	T	TCGA-KM-8440-01A-11D-2310-10	9176868	75093415	27437977	43	2007											
KIAA0430	9665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	15695994	15695994	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtatgaagtaaagaccgcaCattctttgcaaacaaataca	6	8	1	2	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	15695994	C	A	15695994	3	1	27	1	0	0	0	0	1	0	0	0	8238	478	17	5	768	5	KIAA0430	16	15695994	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		15695994	74658759	44	2008											
COQ7	10229	mdanderson.org;bcgsc.ca	37	chr16	19085298	19085298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcaatgagttgatggttaCgttcagggtccggccaacag	13	8	2	2	rs11074359	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	19085298	C	T	19085298	3	4	27	1	0	0	0	0	1	0	0	0	3779	536	19	1	318	1	COQ7	16	19085298	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	3389304	19085298	71269455	45	2009											
PKD1L2	114780	hgsc.bcm.edu;bcgsc.ca	37	chr16	81213360	81213360	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggaccttggccaaaatcctCtgagtctgcaggcatccagg	11	12	2	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	81213360	C	T	81213360	3	4	27	1	0	0	0	0	1	0	0	0	12045	913	32	4	5422	4	PKD1L2	16	81213360	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	62128062	81213360	9141393	46	2010											
GLP2R	9340	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	9763353	9763353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaggcctctacctccacaCgctgctggagcccacagtgc	10	16	1	1	rs145296340	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	9763353	C	T	9763353	3	4	27	1	0	0	0	0	1	0	0	0	6509	536	19	1	886	1	GLP2R	17	9763353	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		9763353	71431857	47	2011											
HEXIM1	10614	ucsc.edu	37	chr17	43226939	43226939	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgtcatgactccgaggccAgtaagttgggggctcctgcc	13	12	1	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	43226939	A	G	43226939	3	3	27	1	0	0	0	0	1	0	0	0	7134	188	7	2	384	2	HEXIM1	17	43226939	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	33463586	43226939	37968271	48	2012											
TSEN54	283989	mdanderson.org	37	chr17	73518328	73518328	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagctgctgcagcggcggcAggtgcagaggagccagcgcc	19	12	0	1	rs77247739		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	73518328	A	C	73518328	3	2	27	1	0	0	0	0	1	0	0	0	16719	188	7	5	1196	5	TSEN54	17	73518328	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10	30291389	73518328	7676882	49	2013											
DNAH17	8632	bcgsc.ca	37	chr17	76455172	76455172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgcctcttgggcgccaCgtcgcagtagacctcgtaga	12	14	1	2	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	76455172	C	T	76455172	3	4	27	1	0	0	0	0	1	0	0	0	4638	536	19	1	3700	1	DNAH17	17	76455172	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	2936844	76455172	4740038	50	2014											
PIK3C3	5289	mdanderson.org;bcgsc.ca	37	chr18	39607490	39607490	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacttgaacgtaatgagaaGattcagccaagcattgttga	10	6	1	4	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	39607490	G	T	39607490	3	4	27	1	0	0	0	0	1	0	0	0	11992	942	33	5	1622	5	PIK3C3	18	39607490	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10		39607490	38469758	51	2015											
SIRT6	51548	mdanderson.org	37	chr19	4174859	4174859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacgggggccgtcccaggCggggatctccagccccaggt	15	16	1	0	rs74317014	byfrequency	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	4174859	C	T	4174859	3	4	27	1	0	0	0	0	1	0	0	0	14440	768	27	1	248	1	SIRT6	19	4174859	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		4174859	54954124	52	2016											
CACNA1A	773	mdanderson.org	37	chr19	13319693	13319693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttgtcggggggcgggggAtggtggtggtggtggtggtg	25	4	0	0	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	13319693	A	G	13319693	2	3	27	1	0	0	0	0	0	0	0	1	2563	330	12	4		4	CACNA1A	19	13319693	Silent	SNP	A	TCGA-KM-8440-01A-11D-2310-10	9144834	13319693	45809290	53	2017											
CLEC17A	388512	broad.mit.edu	37	chr19	14710546	14710548	+	In_Frame_Del	DEL	CTA	CTA	-													cagtgactggcatggcagggCtagctggcctgaagcatgac					novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		-	14710548	CTA	-	14710546	7	5	27	1	0	1	0	1	0	0	0	0	3530	796	28	0	651	0	CLEC17A	19	14710546	In_Frame_Del	DEL	CTA	TCGA-KM-8440-01A-11D-2310-10	1390853	14710546	44418437	54	2018											
MRPS12	6183	bcgsc.ca	37	chr19	39423174	39423175	+	Frame_Shift_Ins	INS	-	-	GGCTCAGCACTGGCCGCGA													cgcaagtgctgtcgagtgcgINSgctcagcactggccgcgagg					novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		GGCTCAGCACTGGCCGCGA	39423175	-	GGCTCAGCACTGGCCGCGA	39423174	7	5	27	1	0	1	1	0	0	0	0	0	9901	1116	39	0	257	0	MRPS12	19	39423174	Frame_Shift_Ins	INS	-	TCGA-KM-8440-01A-11D-2310-10	24712628	39423174	19705809	55	2019											
LIPE	3991	mdanderson.org	37	chr19	42905986	42905986	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtcgccccccgcagcccCcgtctacccccgcagccccc	8	25	1	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	42905986	C	A	42905986	3	1	27	1	0	0	0	0	1	0	0	0	8885	623	22	5	25	5	LIPE	19	42905986	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	3482812	42905986	16222997	56	2020											
KPTN	11133	broad.mit.edu	37	chr19	47987306	47987307	+	Frame_Shift_Ins	INS	-	-	C													gcggccagcagctccccgcgINScccgccggcgccgcctgcca					novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	47987307	-	C	47987306	7	5	27	1	0	1	1	0	0	0	0	0	8498	1087	38	0	1246	0	KPTN	19	47987306	Frame_Shift_Ins	INS	-	TCGA-KM-8440-01A-11D-2310-10	5081320	47987306	11141677	57	2021											
DEFB132	400830	ucsc.edu	37	chr20	238441	238441	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagttcctgctcctggtcTtggcagccctcggattcctg	11	13	1	1	rs74636637		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		C	238441	T	C	238441	2	2	27	1	0	0	0	0	0	0	0	1	4454	1606	56	2		2	DEFB132	20	238441	Silent	SNP	T	TCGA-KM-8440-01A-11D-2310-10		238441	62787079	58	2022											
SIRPB1	10326	mdanderson.org	37	chr20	1592120	1592120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggggtgatgttactgatgcGgatggaaaagtccatgttgt	15	4	0	2	rs1135201		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	1592120	G	T	1592120	3	4	27	1	0	0	0	0	1	0	0	0	14431	1116	39	5	2033	5	SIRPB1	20	1592120	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	1353679	1592120	61433400	59	2023											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr21	42080523	42080523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgttggggtggacgtggCggatcccggggacatcgtag	19	9	0	0	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	42080523	C	T	42080523	3	4	27	1	0	0	0	0	1	0	0	0	4805	768	27	1	5948	1	DSCAM	21	42080523	Missense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10		42080523	6049372	60	2024											
KRTAP10-10	353333	mdanderson.org	37	chr21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttccctcctctgccgccccGtgtgctcccgccctgcctgc	8	22	1	0	rs1785472	by2hit2allele	TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		A	46058034	G	A	46058034	3	1	27	1	0	0	0	0	1	0	0	0	8567	1145	40	1	702	1	KRTAP10-10	21	46058034	Missense_Mutation	SNP	G	TCGA-KM-8440-01A-11D-2310-10	3977511	46058034	2071861	61	2025											
CLTCL1	8218	broad.mit.edu;bcgsc.ca	37	chr22	19203748	19203748	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaggatcccgtgtttctgAcaatgctgtctgtaccacct	8	12	3	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		G	19203748	A	G	19203748	3	3	27	1	0	0	0	0	1	0	0	0	3596	275	10	2	2040	2	CLTCL1	22	19203748	Missense_Mutation	SNP	A	TCGA-KM-8440-01A-11D-2310-10		19203748	32100818	62	2026											
SCARF2	91179	broad.mit.edu	37	chr22	20791941	20791943	+	In_Frame_Del	DEL	AGC	AGC	-													cggtgtccggcagcatccagAgcagcagcagcagcagcagc					novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		-	20791943	AGC	-	20791941	7	5	27	1	0	1	0	1	0	0	0	0	13980	304	11	0	2555	0	SCARF2	22	20791941	In_Frame_Del	DEL	AGC	TCGA-KM-8440-01A-11D-2310-10	1588193	20791941	30512625	63	2027											
PKDREJ	10343	broad.mit.edu	37	chr22	46653502	46653502	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgtcttctcatccagCcaattgctttcttgaagttc	6	13	3	1	novel		TCGA-KM-8440-01A-11D-2310-10	TCGA-KM-8440-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cdf313c8-59f9-41c6-9bd2-f47cb4287da5	f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186		T	46653502	C	T	46653502	4	4	27	1	0	0	0	0	0	1	0	0	12050	740	26	3	1047	3	PKDREJ	22	46653502	Nonsense_Mutation	SNP	C	TCGA-KM-8440-01A-11D-2310-10	25861561	46653502	4651064	64	2028											
MEGF6	1953	mdanderson.org	37	chr1	3413868	3413868	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgacgtggtggcaggcagcgCcaggcgggcagctgcagcgc	19	12	0	1	rs4648506	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	3413868	C	G	3413868	3	3	28	1	0	0	0	0	1	0	0	0	9539	739	26	5	1259	5	MEGF6	1	3413868	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		3413868	245836753	1	2029											
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	11187847	11187847	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagaggatggccactcggAtcagctcctcgctcacctga	11	15	2	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	11187847	A	G	11187847	3	3	28	1	0	0	0	0	1	0	0	0	10032	333	12	4	1659	4	MTOR	1	11187847	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	7773979	11187847	238062774	2	2030											
FOXJ3	22887	hgsc.bcm.edu	37	chr1	42693588	42693588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccctcttctttggccgaGtaggcagcacatcttccttc	9	14	3	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	42693588	G	A	42693588	3	1	28	1	0	0	0	0	1	0	0	0	6064	1029	36	4	1410	4	FOXJ3	1	42693588	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	31505741	42693588	206557033	3	2031											
STIL	6491	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	47717422	47717422	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acaattattttggttcgatcGagtgacagacagttgtgaca	10	6	0	3	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	47717422	G	A	47717422	4	1	28	1	0	0	0	0	0	1	0	0	15382	1066	37	1	617	1	STIL	1	47717422	Nonsense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	5023834	47717422	201533199	4	2032											
FAM69A	388650	broad.mit.edu	37	chr1	93341936	93341936	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccagcttccaacaaaaaCcactaaccaggaaaagaaaa	4	11	0	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	93341936	C	A	93341936	3	1	28	1	0	0	0	0	1	0	0	0	5651	507	18	5	1196	5	FAM69A	1	93341936	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	45624514	93341936	155908685	5	2033											
ABCD3	5825	ucsc.edu	37	chr1	94884103	94884103	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgccgcgttcctgctgctCtgcctgctccacaagcggcg	13	16	1	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	94884103	C	T	94884103	2	4	28	1	0	0	0	0	0	0	0	1	62	900	32	4		4	ABCD3	1	94884103	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	1542167	94884103	154366518	6	2034											
EPHX1	2052	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	226027678	226027678	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcaaggagaaggtattcTacagcctgatgagggagagc	14	8	2	4	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	226027678	T	C	226027678	3	2	28	1	0	0	0	0	1	0	0	0	5218	1522	53	2	889	2	EPHX1	1	226027678	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	131143575	226027678	23222943	7	2035											
VPS54	51542	mdanderson.org	37	chr2	64124722	64124722	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcattaattcttaaaaataaCatctgaaaaagaaataaaac	3	5	2	2	rs11558741	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	64124722	C	A	64124722	3	1	28	1	0	0	0	0	1	0	0	0	17322	478	17	5	205	5	VPS54	2	64124722	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		64124722	179074651	8	2036											
NCK2	8440	ucsc.edu	37	chr2	106509538	106509538	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattgggcagcggcgcttccAcaccatggacgagctggtgg	15	12	0	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	106509538	A	G	106509538	3	3	28	1	0	0	0	0	1	0	0	0	10299	159	6	2	1059	2	NCK2	2	106509538	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	42384816	106509538	136689835	9	2037											
TANC1	85461	ucsc.edu	37	chr2	160031482	160031482	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtggtggcctaccactacTgccaggctgacaacacgtac	11	13	0	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	160031482	T	C	160031482	3	2	28	1	0	0	0	0	1	0	0	0	15645	1580	55	2	1560	2	TANC1	2	160031482	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	53521944	160031482	83167891	10	2038											
FASTKD1	79675	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr2	170428445	170428445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggttcacaactgatgggtCgaaattgaaacactctccag	10	9	2	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	170428445	C	T	170428445	3	4	28	1	0	0	0	0	1	0	0	0	5734	884	31	1	2504	1	FASTKD1	2	170428445	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	10396963	170428445	72770928	11	2039											
MTMR14	64419	bcgsc.ca	37	chr3	9712769	9712769	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttgataaggtcagaggcTatgacatcaagctgcttcga	10	7	2	3	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	9712769	T	C	9712769	3	2	28	1	0	0	0	0	1	0	0	0	10020	1522	53	2	614	2	MTMR14	3	9712769	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		9712769	188309661	12	2040											
DNAH1	25981	broad.mit.edu	37	chr3	52416340	52416340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacttctgcctccagggccGagtacgagtgcttccagatt	10	12	1	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	52416340	G	A	52416340	3	1	28	1	0	0	0	0	1	0	0	0	4634	1059	37	1	8004	1	DNAH1	3	52416340	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	42703571	52416340	145606090	13	2041											
HRG	3273	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	186395001	186395001	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacccccacctcctccagatGaaagagatcactcacatgga	7	15	2	3	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	186395001	G	T	186395001	4	4	28	1	0	0	0	0	0	1	0	0	7412	1291	45	5	933	5	HRG	3	186395001	Nonsense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	133978661	186395001	11627429	14	2042											
PDE6B	5158	ucsc.edu	37	chr4	656004	656004	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcgccacggcttcaacgtgGcccagacgatgttcacgctg	13	14	2	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	656004	G	T	656004	3	4	28	1	0	0	0	0	1	0	0	0	11725	1203	42	5	1746	5	PDE6B	4	656004	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10		656004	190498272	15	2043											
RASL11B	65997	hgsc.bcm.edu	37	chr4	53728693	53728694	+	Frame_Shift_Del	DEL	AT	AT	-													cgatgcgcctcattcagaacAtgtgcaccatcgccgagtac					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		-	53728694	AT	-	53728693	7	5	28	1	0	1	0	1	0	0	0	0	13174	217	8	0	21	0	RASL11B	4	53728693	Frame_Shift_Del	DEL	AT	TCGA-KM-8441-01A-11D-2310-10	53072689	53728693	137425583	16	2044											
UGT2B7	7364	broad.mit.edu	37	chr4	69962648	69962648	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttcaaataagaaatttaTgaaaaaagtacaagagtcaa	6	3	2	3	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	69962648	T	C	69962648	3	2	28	1	0	0	0	0	1	0	0	0	17068	1464	51	4	412	4	UGT2B7	4	69962648	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	16233955	69962648	121191628	17	2045											
PLK4	10733	broad.mit.edu;bcgsc.ca	37	chr4	128814529	128814529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtgaaagtgaagttaatAgcttgaaagaggagataaaa	11	1	0	5	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	128814529	A	C	128814529	3	2	28	1	0	0	0	0	1	0	0	0	12178	420	15	5	2320	5	PLK4	4	128814529	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	58851881	128814529	62339747	18	2046											
ENPP6	133121	bcgsc.ca	37	chr4	185138788	185138788	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tagggaagtctggagtcaagTaatccacttttactcccctg	9	10	2	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	185138788	T	A	185138788	3	1	28	1	0	0	0	0	1	0	0	0	5173	1638	57	5	1169	5	ENPP6	4	185138788	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	56324259	185138788	6015488	19	2047											
ISOC1	51015	ucsc.edu;mdanderson.org	37	chr5	128430757	128430757	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtgcgcctcgtgccgTtgcagatccaggtgggtcct	15	12	0	1	rs1127827	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	128430757	T	C	128430757	2	2	28	1	0	0	0	0	0	0	0	1	7923	1722	60	2		2	ISOC1	5	128430757	Silent	SNP	T	TCGA-KM-8441-01A-11D-2310-10		128430757	52484503	20	2048											
MRPS10	55173	broad.mit.edu	37	chr6	42179589	42179589	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ataactgtccaatacagcctTatcgtgacctttcaccaaaa	4	12	1	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	42179589	T	C	42179589	3	2	28	1	0	0	0	0	1	0	0	0	9899	1763	61	4	368	4	MRPS10	6	42179589	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		42179589	128935478	21	2049											
PRDM13	59336	bcgsc.ca	37	chr6	100057081	100057081	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcttctaccgagcattgCgagacgtccagccaggggag	13	11	2	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	100057081	C	T	100057081	4	4	28	1	0	0	0	0	0	1	0	0	12543	760	27	1	305	1	PRDM13	6	100057081	Nonsense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	57877492	100057081	71057986	22	2050											
MEST	4232	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr7	130140638	130140638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactctttcagtctcacccCagtctttgggccgtatactc	8	14	4	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	130140638	C	T	130140638	3	4	28	1	0	0	0	0	1	0	0	0	9561	594	21	4	690	4	MEST	7	130140638	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		130140638	28998025	23	2051											
FAM160B2	64760	broad.mit.edu;hgsc.bcm.edu	37	chr8	21956855	21956855	+	Frame_Shift_Del	DEL	C	C	-													tcttcgtggagaccctgcagCcccagctcctgcacgtgtaa					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		-	21956855	C	-	21956855	7	5	28	1	0	1	0	1	0	0	0	0	5514	739	26	0	968	0	FAM160B2	8	21956855	Frame_Shift_Del	DEL	C	TCGA-KM-8441-01A-11D-2310-10		21956855	124407167	24	2052	55	2									
FAM160B2	64760	bcgsc.ca	37	chr8	21956856	21956856	+	Frame_Shift_Del	DEL	C	C	-													cttcgtggagaccctgcagcCccagctcctgcacgtgtaag					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		-	21956856	C	-	21956856	7	5	28	1	0	1	0	1	0	0	0	0	5514	623	22	0	969	0	FAM160B2	8	21956856	Frame_Shift_Del	DEL	C	TCGA-KM-8441-01A-11D-2310-10	1	21956856	124407166	25	2053	55	2									
MCM4	4173	broad.mit.edu	37	chr8	48882495	48882495	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttgatgaagaagcagaaCagaaacttttttcagagaaa	9	6	1	6	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	48882495	C	T	48882495	4	4	28	1	0	0	0	0	0	1	0	0	9466	479	17	4	1350	4	MCM4	8	48882495	Nonsense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	26925639	48882495	97481527	26	2054											
PCMTD1	115294	mdanderson.org	37	chr8	52733016	52733016	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggctcctctggcttcatTgcttcattgtgatctttttc	9	10	4	1	rs117828481		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	52733016	T	C	52733016	2	2	28	1	0	0	0	0	0	0	0	1	11665	1799	63	4		4	PCMTD1	8	52733016	Silent	SNP	T	TCGA-KM-8441-01A-11D-2310-10	3850521	52733016	93631006	27	2055											
C9orf43	257169	hgsc.bcm.edu;bcgsc.ca	37	chr9	116183413	116183413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatttgaatgagacgcaaCttccctgccctgaagatgtt	9	9	0	5	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	116183413	C	T	116183413	3	4	28	1	0	0	0	0	1	0	0	0	2508	565	20	4	390	4	C9orf43	9	116183413	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		116183413	25030018	28	2056											
PAPPA	5069	broad.mit.edu	37	chr9	118950340	118950340	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgacggcggggattgccgCcacctgcgccaccctgcctt	12	18	0	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	118950340	C	T	118950340	2	4	28	1	0	0	0	0	0	0	0	1	11511	726	26	3		3	PAPPA	9	118950340	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	2766927	118950340	22263091	29	2057											
BAG3	9531	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr10	121431909	121431909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatacacgagcagaacgttaCccggccagcagcccagccct	10	16	0	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	121431909	C	T	121431909	3	4	28	1	0	0	0	0	1	0	0	0	1292	507	18	3	660	3	BAG3	10	121431909	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		121431909	14102838	30	2058											
PAMR1	25891	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	35492290	35492290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acgcttgatgatctggccatCgcggttgtctccatcacgaa	10	12	3	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	35492290	C	T	35492290	3	4	28	1	0	0	0	0	1	0	0	0	11492	884	31	1	1674	1	PAMR1	11	35492290	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10		35492290	99514226	31	2059											
CNTN5	53942	ucsc.edu	37	chr11	100141946	100141946	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggagatccaagcaccccaTctcgaatgatccgcacaaat	7	14	1	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	100141946	T	C	100141946	3	2	28	1	0	0	0	0	1	0	0	0	3673	1435	50	4	2349	4	CNTN5	11	100141946	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	64649656	100141946	34864570	32	2060											
ACAT1	38	mdanderson.org	37	chr11	107992346	107992346	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgaccatggctgtgctgGcggcacttctgcgcagcggc	15	14	1	0	rs3741056	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	107992346	G	C	107992346	3	2	28	1	0	0	0	0	1	0	0	0	121	1203	42	5	15	5	ACAT1	11	107992346	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	7850400	107992346	27014170	33	2061											
FOXM1	2305	ucsc.edu	37	chr12	2968317	2968317	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttaaaaggtcctcccacTtcctgggagtagctgagctg	11	11	1	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	2968317	T	C	2968317	2	2	28	1	0	0	0	0	0	0	0	1	6069	1606	56	2		2	FOXM1	12	2968317	Silent	SNP	T	TCGA-KM-8441-01A-11D-2310-10		2968317	130883578	34	2062											
OR4K5	79317	broad.mit.edu	37	chr14	20389392	20389392	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggaattctttccctaagCactttctctctcttggtcag	7	11	4	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	20389392	C	T	20389392	2	4	28	1	0	0	0	0	0	0	0	1	11152	709	25	4		4	OR4K5	14	20389392	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10		20389392	86960148	35	2063											
FLRT2	23768	broad.mit.edu	37	chr14	86088695	86088695	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatctgcgtaagctggaAcggctggatatatccaacaa	9	9	2	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	86088695	A	G	86088695	2	3	28	1	0	0	0	0	0	0	0	1	5988	40	2	2		2	FLRT2	14	86088695	Silent	SNP	A	TCGA-KM-8441-01A-11D-2310-10	65699303	86088695	21260845	36	2064											
SLC25A29	123096	mdanderson.org	37	chr14	100759046	100759046	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtagacgccgaagctgggCgtctcacgcagcaacgtgga	14	11	1	1	rs3825555	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	100759046	C	A	100759046	2	1	28	1	0	0	0	0	0	0	0	1	14590	755	27	5		5	SLC25A29	14	100759046	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	14670351	100759046	6590494	37	2065											
PLD4	122618	broad.mit.edu	37	chr14	105393529	105393529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccccacatggccatgctccAtgccgccccgccgcccgtgg	10	22	0	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	105393529	A	G	105393529	3	3	28	1	0	0	0	0	1	0	0	0	12128	217	8	4	54	4	PLD4	14	105393529	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10	4634483	105393529	1956011	38	2066											
SECISBP2L	9728	hgsc.bcm.edu;bcgsc.ca	37	chr15	49304956	49304956	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgtcaaacagggctgactTttggttaaaggttttctatt	10	5	2	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	49304956	T	A	49304956	3	1	28	1	0	0	0	0	1	0	0	0	14104	1838	64	5	1713	5	SECISBP2L	15	49304956	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		49304956	53226436	39	2067											
FOXB1	27023	ucsc.edu;bcgsc.ca	37	chr15	60297497	60297497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcaagcgcttcaaggtgcTtaagtccgaccacctggcgc	11	15	1	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	60297497	T	C	60297497	3	2	28	1	0	0	0	0	1	0	0	0	6041	1609	56	2	337	2	FOXB1	15	60297497	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10	10992541	60297497	42233895	40	2068											
SCAPER	49855	broad.mit.edu;bcgsc.ca	37	chr15	77046256	77046256	+	Missense_Mutation	SNP	G	G	T													catcctgcgtcgttgatctaGcaattcttccttccacttcc					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	77046256	G	T	77046256	3	4	28	1	0	0	0	0	1	0	0	0	13974	962	34	5	2515	5	SCAPER	15	77046256	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	16748759	77046256	25485136	41	2069	56	2									
SCAPER	49855	bcgsc.ca	37	chr15	77046257	77046257	+	Missense_Mutation	SNP	C	C	A													atcctgcgtcgttgatctagCaattcttccttccacttccg					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	77046257	C	A	77046257	3	1	28	1	0	0	0	0	1	0	0	0	13974	709	25	5	2516	5	SCAPER	15	77046257	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	1	77046257	25485135	42	2070	56	2									
TSC2	7249	bcgsc.ca	37	chr16	2131706	2131706	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcatggcggctgagcgcTtcaaggagcaccgggacaca	13	14	2	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	2131706	T	C	2131706	3	2	28	1	0	0	0	0	1	0	0	0	16711	1609	56	2	3839	2	TSC2	16	2131706	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		2131706	88223047	43	2071											
ZNF668	79759	broad.mit.edu	37	chr16	31072731	31072731	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttctcgtcagcctcctcAccccccgcctcgcctgcccc	7	24	3	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	31072731	A	C	31072731	2	2	28	1	0	0	0	0	0	0	0	1	18180	146	6	5		5	ZNF668	16	31072731	Silent	SNP	A	TCGA-KM-8441-01A-11D-2310-10	28941025	31072731	59282022	44	2072											
ITGAX	3687	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	31393193	31393193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaaattgccccagaaaacGggacacagacccccagcccg	9	16	0	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	31393193	G	A	31393193	3	1	28	1	0	0	0	0	1	0	0	0	7950	1116	39	1	3575	1	ITGAX	16	31393193	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	320462	31393193	58961560	45	2073											
SETD6	79918	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr16	58550764	58550764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggagcccaactcccccGtgatggtgcctgctgcagac	11	14	0	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	58550764	G	A	58550764	3	1	28	1	0	0	0	0	1	0	0	0	14232	1145	40	1	742	1	SETD6	16	58550764	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	27157571	58550764	31803989	46	2074											
HYDIN	54768	mdanderson.org	37	chr16	71025245	71025245	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagatcacactggaagctttCgtttttcttagttctttttc	7	8	3	1	rs1774516	bycluster;byfrequency;by2hit2allele	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	71025245	C	T	71025245	2	4	28	1	0	0	0	0	0	0	0	1	7528	871	31	1		1	HYDIN	16	71025245	Silent	SNP	C	TCGA-KM-8441-01A-11D-2310-10	12474481	71025245	19329508	47	2075											
GALNS	2588	broad.mit.edu;hgsc.bcm.edu	37	chr16	88908341	88908346	+	In_Frame_Del	DEL	TGCGGA	TGCGGA	-													gttggtggtgtagaagccatTgcggatgggtagccgtcctg					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	TGCGGA	TGCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		-	88908346	TGCGGA	-	88908341	7	5	28	1	0	1	0	1	0	0	0	0	6260	1812	63	0	1333	0	GALNS	16	88908341	In_Frame_Del	DEL	TGCGGA	TCGA-KM-8441-01A-11D-2310-10	17883096	88908341	1446412	48	2076	57	2	1	25		3	2	15	N	TGCGGA_C	2.62298e-05
GALNS	2588	bcgsc.ca	37	chr16	88908342	88908347	+	In_Frame_Del	DEL	TGCGGA	TGCGGA	-													ttggtggtgtagaagccattGcggatgggtagccgtcctgt					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	TGCGGA	TGCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		-	88908347	TGCGGA	-	88908342	7	5	28	1	0	1	0	1	0	0	0	0	6260	1306	46	0	1334	0	GALNS	16	88908342	In_Frame_Del	DEL	TGCGGA	TCGA-KM-8441-01A-11D-2310-10	1	88908342	1446411	49	2077	57	2	1	25		3	2	15	N	TGCGGA_C	2.62298e-05
GALNS	2588	bcgsc.ca	37	chr16	88908355	88908355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccattgcggatgggtagcCgtcctgtgagcagtgccgcc	15	12	0	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	88908355	C	T	88908355	3	4	28	1	0	0	0	0	1	0	0	0	6260	652	23	1	1347	1	GALNS	16	88908355	Missense_Mutation	SNP	C	TCGA-KM-8441-01A-11D-2310-10	13	88908355	1446398	50	2078			1	25		3	2	15	N	TGCGGA_C	2.62298e-05
CCDC144NL	339184	mdanderson.org	37	chr17	20768730	20768730	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttttggttgtgaatgtttAccttacaacattagacacat	7	6	0	2	rs4605228	byfrequency	TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	20768730	A	G	20768730	3	3	28	1	0	0	0	0	1	0	0	0	2804	404	14	2	5	2	CCDC144NL	17	20768730	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10		20768730	60426480	51	2079											
SPATA20	64847	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	48629513	48629513	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgaggctgagctgggGgctggcctgcccctgcgtct	17	12	1	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	48629513	G	T	48629513	2	4	28	1	0	0	0	0	0	0	0	1	15106	1219	43	5		5	SPATA20	17	48629513	Silent	SNP	G	TCGA-KM-8441-01A-11D-2310-10	27860783	48629513	32565697	52	2080											
DCC	1630	broad.mit.edu	37	chr18	50734080	50734080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatggactatcttataaacTggaaggcctgaaaaaattca	8	6	2	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	50734080	T	C	50734080	3	2	28	1	0	0	0	0	1	0	0	0	4314	1580	55	2	1796	2	DCC	18	50734080	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		50734080	27343168	53	2081											
HNRNPM	4670	ucsc.edu	37	chr19	8550892	8550892	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatcgagcgcatgggccTgagcatggagcgcatggtgc	16	11	0	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		C	8550892	T	C	8550892	3	2	28	1	0	0	0	0	1	0	0	0	7329	1580	55	2	1634	2	HNRNPM	19	8550892	Missense_Mutation	SNP	T	TCGA-KM-8441-01A-11D-2310-10		8550892	50578091	54	2082											
MUC16	94025	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	9002616	9002616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagtccagggcttttgggGtcaggacgatgggtgcagac	16	9	1	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	9002616	G	T	9002616	3	4	28	1	0	0	0	0	1	0	0	0	10051	1252	44	5	3459	5	MUC16	19	9002616	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	451724	9002616	50126367	55	2083											
MUC16	94025	broad.mit.edu	37	chr19	9066166	9066167	+	Frame_Shift_Ins	INS	-	-	G													agcagggaagggagagagctINSgggattttccagagagggag					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	9066167	-	G	9066166	7	5	28	1	0	1	1	0	0	0	0	0	10051	1580	55	0	22571	0	MUC16	19	9066166	Frame_Shift_Ins	INS	-	TCGA-KM-8441-01A-11D-2310-10	63550	9066166	50062817	56	2084											
ZNF440	126070	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr19	11942848	11942848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagaaaaggcttatcaatGtaaggaatgtggaaaagcat	13	3	1	1	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	11942848	G	A	11942848	3	1	28	1	0	0	0	0	1	0	0	0	18018	1377	48	4	871	4	ZNF440	19	11942848	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10	2876682	11942848	47186135	57	2085											
SIGLEC12	89858	hgsc.bcm.edu	37	chr19	52004795	52004796	+	Frame_Shift_Ins	INS	-	-	T													cttacatggtcccctgcccgINSgaaccagtagccatgaactg					novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		T	52004796	-	T	52004795	7	5	28	1	0	1	1	0	0	0	0	0	14406	1115	39	0	1699	0	SIGLEC12	19	52004795	Frame_Shift_Ins	INS	-	TCGA-KM-8441-01A-11D-2310-10	40061947	52004795	7124188	58	2086											
TGM6	343641	ucsc.edu	37	chr20	2381066	2381066	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcgggcggaccctggAggacctgacagaagacagca	13	13	0	3	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	2381066	A	G	2381066	3	3	28	1	0	0	0	0	1	0	0	0	15938	304	11	2	991	2	TGM6	20	2381066	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10		2381066	60644454	59	2087											
SFI1	9814	ucsc.edu	37	chr22	32009705	32009705	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcacccagcaggaaagtgAcgtttgagggtccccttctc	11	13	1	2	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		G	32009705	A	G	32009705	3	3	28	1	0	0	0	0	1	0	0	0	14253	275	10	2	2962	2	SFI1	22	32009705	Missense_Mutation	SNP	A	TCGA-KM-8441-01A-11D-2310-10		32009705	19294861	60	2088											
TKTL1	8277	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	153556232	153556232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccattaaacctctggatGtcgccaccatcgtctccagt	6	14	2	0	novel		TCGA-KM-8441-01A-11D-2310-10	TCGA-KM-8441-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	97c1a300-978d-4df1-9e97-ce2f92b9eff1	ea82c301-a5be-463a-9549-b493cd5c95d8		A	153556232	G	A	153556232	3	1	28	1	0	0	0	0	1	0	0	0	16039	1377	48	4	1592	4	TKTL1	23	153556232	Missense_Mutation	SNP	G	TCGA-KM-8441-01A-11D-2310-10		153556232	1714328	61	2089											
MORN1	79906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	2268198	2268198	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaaggggtggtacccaggCgggggcggccccaggaggac	21	10	0	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	2268198	C	T	2268198	2	4	29	1	0	0	0	0	0	0	0	1	9786	755	27	1		1	MORN1	1	2268198	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		2268198	246982423	1	2090											
FAM131C	348487	mdanderson.org	37	chr1	16388642	16388642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgttgtagttgccggggcGggatctggagtcggacaggt	18	8	1	0	rs79991837	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	16388642	G	A	16388642	3	1	29	1	0	0	0	0	1	0	0	0	5484	1116	39	1	638	1	FAM131C	1	16388642	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	14120444	16388642	232861979	2	2091											
CYP4Z1	199974	mdanderson.org	37	chr1	47548113	47548113	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tattcatcaccatgatgtctGagagtgttcggatgatgctg	11	7	3	3	rs200076743		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	47548113	G	A	47548113	3	1	29	1	0	0	0	0	1	0	0	0	4225	1291	45	4	486	4	CYP4Z1	1	47548113	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	31159471	47548113	201702508	3	2092											
FLG	2312	mdanderson.org	37	chr1	152278689	152278689	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactgtcactgtcctggctCacactggatccctggcgcct	9	16	3	0	rs57672167	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	152278689	C	A	152278689	2	1	29	1	0	0	0	0	0	0	0	1	5971	813	29	5		5	FLG	1	152278689	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	104730576	152278689	96971932	4	2093											
FLG	2312	mdanderson.org	37	chr1	152278814	152278814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaccctgagtgcctggagcCgtctcctgattgttcctcat	10	14	2	2	rs2184952	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	152278814	C	T	152278814	3	4	29	1	0	0	0	0	1	0	0	0	5971	652	23	1	3641	1	FLG	1	152278814	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	125	152278814	96971807	5	2094											
SNAPIN	23557	broad.mit.edu;hgsc.bcm.edu	37	chr1	153631301	153631301	+	Frame_Shift_Del	DEL	G	G	-													gccgcgaccttttcgccgaaGggctgctggagttcctgcga					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		-	153631301	G	-	153631301	7	5	29	1	0	1	0	1	0	0	0	0	14937	1000	35	0	84	0	SNAPIN	1	153631301	Frame_Shift_Del	DEL	G	TCGA-KM-8442-01A-11D-2310-10	1352487	153631301	95619320	6	2095	58	2									
SNAPIN	23557	bcgsc.ca	37	chr1	153631302	153631302	+	Frame_Shift_Del	DEL	G	G	-													ccgcgaccttttcgccgaagGgctgctggagttcctgcgac					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		-	153631302	G	-	153631302	7	5	29	1	0	1	0	1	0	0	0	0	14937	1232	43	0	85	0	SNAPIN	1	153631302	Frame_Shift_Del	DEL	G	TCGA-KM-8442-01A-11D-2310-10	1	153631302	95619319	7	2096	58	2									
CD5L	922	broad.mit.edu;mdanderson.org	37	chr1	157805633	157805633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgccatactcactctcacacGatgccccagcatcttcatca	4	17	5	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	157805633	G	A	157805633	3	1	29	1	0	0	0	0	1	0	0	0	3056	1059	37	1	691	1	CD5L	1	157805633	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	4174331	157805633	91444988	8	2097											
PPP1R15B	84919	broad.mit.edu	37	chr1	204379294	204379294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actacaagctggtctggcagAaatgggaaggtcaccttcta	11	9	3	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	204379294	A	G	204379294	3	3	29	1	0	0	0	0	1	0	0	0	12449	246	9	4	903	4	PPP1R15B	1	204379294	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	46573661	204379294	44871327	9	2098											
ELMOD3	84173	ucsc.edu	37	chr2	85604502	85604502	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacctgagaggcgcaggcTtccttgccctcctgcatctg	11	15	1	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	85604502	T	C	85604502	3	2	29	1	0	0	0	0	1	0	0	0	5109	1609	56	2	673	2	ELMOD3	2	85604502	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		85604502	157594871	10	2099											
KDM3A	55818	ucsc.edu;mdanderson.org	37	chr2	86693720	86693720	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttccacaagcattgacTggccttcctaaggagtgctt	9	11	1	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	86693720	T	G	86693720	2	3	29	1	0	0	0	0	0	0	0	1	8187	1567	55	5		5	KDM3A	2	86693720	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	1089218	86693720	156505653	11	2100											
RGPD2	729857	mdanderson.org	37	chr2	88125234	88125234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaccgctccccgtaggcTttgctgcgcctcatcgcacc	10	17	1	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	88125234	T	C	88125234	2	2	29	1	0	0	0	0	0	0	0	1	13378	1606	56	2		2	RGPD2	2	88125234	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	1431514	88125234	155074139	12	2101											
SNRNP200	23020	broad.mit.edu;bcgsc.ca	37	chr2	96953605	96953605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcactgggtccttacatgcGtttgtcgatcatcttgcaga	9	11	3	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	96953605	G	A	96953605	3	1	29	1	0	0	0	0	1	0	0	0	14950	1145	40	1	3133	1	SNRNP200	2	96953605	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	8828371	96953605	146245768	13	2102											
POTEE	445582	mdanderson.org	37	chr2	132021629	132021629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacactgtgcccatctatgaGgggaatgccctcccccatgc	9	16	1	1	rs76942994	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	132021629	G	T	132021629	3	4	29	1	0	0	0	0	1	0	0	0	12344	991	35	5	2659	5	POTEE	2	132021629	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	35068024	132021629	111177744	14	2103											
SPEG	10290	mdanderson.org	37	chr2	220350135	220350135	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaggacaaggggttatcGccaccaaacctctctgccag	11	13	1	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	220350135	G	T	220350135	2	4	29	1	0	0	0	0	0	0	0	1	15136	1074	38	5		5	SPEG	2	220350135	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	88328506	220350135	22849238	15	2104											
PRR21	643905	mdanderson.org	37	chr2	240982080	240982080	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgggtgaagaggcatggaCgaagggccgtgggtgaagag	21	5	0	4	rs143810849	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	240982080	C	G	240982080	3	3	29	1	0	0	0	0	1	0	0	0	12681	536	19	5	852	5	PRR21	2	240982080	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	20631945	240982080	2217293	16	2105											
ANO10	55129	broad.mit.edu	37	chr3	43607195	43607195	+	Frame_Shift_Del	DEL	A	A	-													aaaggcaatatagaagagtgAggcaaagcaattgaggaagt					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		-	43607195	A	-	43607195	7	5	29	1	0	1	0	1	0	0	0	0	696	304	11	0	763	0	ANO10	3	43607195	Frame_Shift_Del	DEL	A	TCGA-KM-8442-01A-11D-2310-10		43607195	154415235	17	2106											
FLNB	2317	broad.mit.edu	37	chr3	58067357	58067357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatgtcattatcctaggTcatcactcctgaagaaatca	5	12	4	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	58067357	T	C	58067357	3	2	29	1	0	0	0	0	1	0	0	0	5983	1681	58	2	655	2	FLNB	3	58067357	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	14460162	58067357	139955073	18	2107											
MUC4	4585	mdanderson.org	37	chr3	195512505	195512505	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgacaggaagaggggtGgcgtgacctgtggacactga	18	7	0	4	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	195512505	G	A	195512505	2	1	29	1	0	0	0	0	0	0	0	1	10056	1335	47	4		4	MUC4	3	195512505	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	137445148	195512505	2509925	19	2108											
MUC4	4585	mdanderson.org	37	chr3	195515141	195515141	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtcggtgacaggaagagAggtggcgtgacctgtggatg	19	5	0	3	rs71321850		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	195515141	A	G	195515141	3	3	29	1	0	0	0	0	1	0	0	0	10056	304	11	2		2	MUC4	3	195515141	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	2636	195515141	2507289	20	2109											
CRIPAK	285464	mdanderson.org	37	chr4	1389161	1389161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcacatgtgccgatgtggAgtgcccgcctgctcacacgt	12	14	2	0	rs71614973	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	1389161	A	G	1389161	3	3	29	1	0	0	0	0	1	0	0	0	3906	304	11	2	864	2	CRIPAK	4	1389161	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10		1389161	189765115	21	2110											
C4orf6	10141	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	5527059	5527059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtggatcaattaccaaTggacacccagaagcaaattc	9	10	1	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	5527059	T	C	5527059	3	2	29	1	0	0	0	0	1	0	0	0	2299	1464	51	4	4	4	C4orf6	4	5527059	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	4137898	5527059	185627217	22	2111											
CYP4V2	285440	mdanderson.org	37	chr4	187113041	187113041	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggcgcggcgagtgccCtttccctggccggcgccagt	17	14	0	0	rs1055138	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	187113041	C	G	187113041	3	3	29	1	0	0	0	0	1	0	0	0	4223	681	24	5	66	5	CYP4V2	4	187113041	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	181585982	187113041	4041235	23	2112											
PRDM9	56979	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	23521146	23521146	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaaagggaatgcccaaggcGtcattcagtaatgaatctag	10	7	3	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	23521146	G	A	23521146	2	1	29	1	0	0	0	0	0	0	0	1	12552	1132	40	1		1	PRDM9	5	23521146	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		23521146	157394114	24	2113											
ELOVL7	79993	ucsc.edu	37	chr5	60067915	60067915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggagccaatcttcaactcTtggatctaagagaaaaacaa	8	8	4	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	60067915	T	C	60067915	3	2	29	1	0	0	0	0	1	0	0	0	5118	1617	56	2	799	2	ELOVL7	5	60067915	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	36546769	60067915	120847345	25	2114											
NEDD9	4739	broad.mit.edu;mdanderson.org	37	chr6	11185614	11185614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagtcacctgccgtgtcagCgtgtctccaatgaacaccag	10	14	3	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	11185614	C	T	11185614	2	4	29	1	0	0	0	0	0	0	0	1	10392	755	27	1		1	NEDD9	6	11185614	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		11185614	159929453	26	2115											
HLA-DQA2	3118	mdanderson.org	37	chr6	32709265	32709266	+	Missense_Mutation	DNP	TG	TG	CA													ctgggggccctcgccctgacTgccgtgatgagcccctgtgg					rs201984640		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		CA	32709266	TG	CA	32709265	3	2	29	1	0	0	0	0	1	0	0	0	7263	1567	55	2	47	2	HLA-DQA2	6	32709265	Missense_Mutation	DNP	TG	TCGA-KM-8442-01A-11D-2310-10	21523651	32709265	138405802	27	2116											
TTBK1	84630	mdanderson.org	37	chr6	43252029	43252029	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatggcgcggccccagcatTggacacagccatcaccagca	10	17	1	0	rs3800298	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	43252029	T	C	43252029	3	2	29	1	0	0	0	0	1	0	0	0	16782	1821	63	4	3601	4	TTBK1	6	43252029	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	10542764	43252029	127863038	28	2117											
ARMC2	84071	ucsc.edu;bcgsc.ca	37	chr6	109232139	109232139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttcttaatgtctgcaAacttatatttaaaattagca	4	6	3	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	109232139	A	G	109232139	3	3	29	1	0	0	0	0	1	0	0	0	955	14	1	4	1091	4	ARMC2	6	109232139	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	65980110	109232139	61882928	29	2118											
FRK	2444	hgsc.bcm.edu	37	chr6	116265504	116265504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctctgtgaatgtagttcCgagactccagataggccatt	10	9	1	3	rs190064484	by1000genomes	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	116265504	C	T	116265504	3	4	29	1	0	0	0	0	1	0	0	0	6100	652	23	1	486	1	FRK	6	116265504	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	7033365	116265504	54849563	30	2119											
PHF10	55274	mdanderson.org	37	chr6	170115851	170115851	+	Missense_Mutation	SNP	G	G	A													tctttcttccatgcgttcccGgtttaagttgctattaaatt					rs77919800		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	170115851	G	A	170115851	3	1	29	1	0	0	0	0	1	0	0	0	11901	1115	39	1	878	1	PHF10	6	170115851	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	53850347	170115851	999216	31	2120	59	4									
PHF10	55274	mdanderson.org	37	chr6	170115857	170115857	+	Missense_Mutation	SNP	A	A	C													ttccatgcgttcccggtttaAgttgctattaaattctgctg					rs144595699		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	170115857	A	C	170115857	3	2	29	1	0	0	0	0	1	0	0	0	11901	69	3	5	884	5	PHF10	6	170115857	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	6	170115857	999210	32	2121	59	4									
PHF10	55274	mdanderson.org	37	chr6	170115864	170115864	+	Silent	SNP	A	A	G													cgttcccggtttaagttgctAttaaattctgctgctttttt					rs147886321	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	170115864	A	G	170115864	2	3	29	1	0	0	0	0	0	0	0	1	11901	446	16	4		4	PHF10	6	170115864	Silent	SNP	A	TCGA-KM-8442-01A-11D-2310-10	7	170115864	999203	33	2122	59	4									
PHF10	55274	mdanderson.org	37	chr6	170115873	170115873	+	Silent	SNP	T	T	A													tttaagttgctattaaattcTgctgcttttttggcagcttt					rs139968746	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	170115873	T	A	170115873	2	1	29	1	0	0	0	0	0	0	0	1	11901	1567	55	5		5	PHF10	6	170115873	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	9	170115873	999194	34	2123	59	4									
USP42	84132	mdanderson.org	37	chr7	6194266	6194266	+	Silent	SNP	G	G	C													cactcccgacaccggagcggGgtggagctggactgggtcag					rs7784072		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	6194266	G	C	6194266	2	2	29	1	0	0	0	0	0	0	0	1	17179	1219	43	5		5	USP42	7	6194266	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		6194266	152944397	35	2124	60	2									
USP42	84132	mdanderson.org	37	chr7	6194274	6194274	+	Missense_Mutation	SNP	T	T	C													acaccggagcggggtggagcTggactgggtcagacaccact					rs6463529	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	6194274	T	C	6194274	3	2	29	1	0	0	0	0	1	0	0	0	17179	1580	55	2		2	USP42	7	6194274	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	8	6194274	152944389	36	2125	60	2									
CREB5	9586	broad.mit.edu	37	chr7	28848967	28848967	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgctgcagacagaagaggaAggtctgggtgatgtcattgg	16	7	2	4	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	28848967	A	G	28848967	3	3	29	1	0	0	0	0	1	0	0	0	3889	72	3	2	1275	2	CREB5	7	28848967	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	22654693	28848967	130289696	37	2126											
AVL9	23080	bcgsc.ca	37	chr7	32591845	32591845	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctatattttataggagcTttatgaacatatgaatagtt	6	3	1	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	32591845	T	C	32591845	3	2	29	1	0	0	0	0	1	0	0	0	1232	1609	56	2	489	2	AVL9	7	32591845	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	3742878	32591845	126546818	38	2127											
ZAN	7455	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	100346036	100346036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggtggacactgggccctcGgacataaaaatggacccgtc	12	11	0	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	100346036	G	A	100346036	3	1	29	1	0	0	0	0	1	0	0	0	17619	1117	39	1	1230	1	ZAN	7	100346036	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	67754191	100346036	58792627	39	2128											
KCNH2	3757	broad.mit.edu	37	chr7	150642468	150642469	+	Frame_Shift_Ins	INS	-	-	G													cccactaactgcccgggtccINSgagccgtgtctgtgcagggg					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	150642469	-	G	150642468	7	5	29	1	0	1	1	0	0	0	0	0	8093	639	23	0	18	0	KCNH2	7	150642468	Frame_Shift_Ins	INS	-	TCGA-KM-8442-01A-11D-2310-10	50296432	150642468	8496195	40	2129											
MLL3	58508	broad.mit.edu;bcgsc.ca	37	chr7	151917680	151917680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggtctgaaggacggccaCgctattctgatttataatct	11	8	3	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	151917680	C	T	151917680	3	4	29	1	0	0	0	0	1	0	0	0	9699	536	19	1	11243	1	MLL3	7	151917680	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	1275212	151917680	7220983	41	2130											
TMEM70	54968	mdanderson.org	37	chr8	74888616	74888616	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgctccgaggtccccggGcctctgtctcccgggcgtcc	13	20	2	0	rs8075	bycluster;byfrequency;by1000genomes	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	74888616	G	C	74888616	3	2	29	1	0	0	0	0	1	0	0	0	16303	1203	42	5	102	5	TMEM70	8	74888616	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10		74888616	71475406	42	2131											
ADAMTSL1	92949	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	18777867	18777867	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccaaggcctaccatcagcTgggccaggaatggagaagaa	12	11	1	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	18777867	T	A	18777867	3	1	29	1	0	0	0	0	1	0	0	0	274	1580	55	5	3718	5	ADAMTSL1	9	18777867	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		18777867	122435564	43	2132											
AQP7	364	mdanderson.org;bcgsc.ca	37	chr9	33385808	33385808	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcctggcagtgctgggttGttctcctggtccgtgatggc	15	10	1	1	rs62542744	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	33385808	G	T	33385808	3	4	29	1	0	0	0	0	1	0	0	0	833	1368	48	5	454	5	AQP7	9	33385808	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	14607941	33385808	107827623	44	2133											
PRSS3	5646	mdanderson.org	37	chr9	33796801	33796801	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctcactgctacaagacGtaagtgtggggcccctgact	12	12	1	2	rs143707562		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	33796801	G	A	33796801	5	1	29	1	0	0	0	0	0	0	1	0	12711	1159	40	1	422	1	PRSS3	9	33796801	Splice_Site	SNP	G	TCGA-KM-8442-01A-11D-2310-10	410993	33796801	107416630	45	2134											
KIAA1217	56243	ucsc.edu	37	chr10	24790406	24790406	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacctcagccatccacatgAgcctgcttgagatgaggcgg	12	13	1	3	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	24790406	A	G	24790406	3	3	29	1	0	0	0	0	1	0	0	0	8277	304	11	2	1967	2	KIAA1217	10	24790406	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10		24790406	110744341	46	2135											
ZRANB1	54764	bcgsc.ca	37	chr10	126631811	126631811	+	Frame_Shift_Del	DEL	A	A	-													ggaacttgaagtagactttaAaaaactaaagcaaattaaaa					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		-	126631811	A	-	126631811	7	5	29	1	0	1	0	1	0	0	0	0	18325	14	1	0	751	0	ZRANB1	10	126631811	Frame_Shift_Del	DEL	A	TCGA-KM-8442-01A-11D-2310-10	101841405	126631811	8902936	47	2136											
CAPRIN1	4076	broad.mit.edu	37	chr11	34074126	34074126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctgtccagaccgaggcCatgaagcagattctcggggt	15	11	1	3	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	34074126	C	T	34074126	2	4	29	1	0	0	0	0	0	0	0	1	2660	581	21	4		4	CAPRIN1	11	34074126	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		34074126	100932390	48	2137											
OR4X1	390113	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	48285540	48285540	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgggcaatggcctcaTtgtggtgaccatcctggcca	13	11	1	1	rs144193033		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	48285540	T	C	48285540	3	2	29	1	0	0	0	0	1	0	0	0	11163	1493	52	4	130	4	OR4X1	11	48285540	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	14211414	48285540	86720976	49	2138											
OR4C12	283093	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	50004015	50004015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctattaaaatgaattcaGtcacattctttttcttctcc	3	10	5	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	50004015	G	A	50004015	3	1	29	1	0	0	0	0	1	0	0	0	11125	1029	36	4	910	4	OR4C12	11	50004015	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	1718475	50004015	85002501	50	2139											
OR5M9	390162	mdanderson.org;bcgsc.ca	37	chr11	56230678	56230678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggagaagcacacgtccGcaaaagacagatgactcagg	13	9	1	4	rs61902871	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	56230678	G	A	56230678	3	1	29	1	0	0	0	0	1	0	0	0	11256	1087	38	1	734	1	OR5M9	11	56230678	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	6226663	56230678	78775838	51	2140											
P2RY2	5029	ucsc.edu;mdanderson.org	37	chr11	72945651	72945651	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctggggccgggcccgctaCgctcgccgggtggccggggc	20	16	0	0	rs147817701	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	72945651	C	T	72945651	2	4	29	1	0	0	0	0	0	0	0	1	11431	547	19	1		1	P2RY2	11	72945651	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	16714973	72945651	62060865	52	2141											
MPZL3	196264	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	118111082	118111082	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgaatctccaaggaaaagacGatataaacacctaatcaaag	6	9	2	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	118111082	G	A	118111082	2	1	29	1	0	0	0	0	0	0	0	1	9829	1048	37	1		1	MPZL3	11	118111082	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	45165431	118111082	16895434	53	2142											
KRT6A	3853	mdanderson.org	37	chr12	52886641	52886641	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccggctccaccacccagaCcaaagccaatgccggctcca	9	19	0	1	rs681063	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	52886641	C	T	52886641	3	4	29	1	0	0	0	0	1	0	0	0	8541	507	18	3	1398	3	KRT6A	12	52886641	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10		52886641	80965254	54	2143											
SRGAP1	57522	hgsc.bcm.edu	37	chr12	64536390	64536390	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgttcttccaaaaacaAatcctaccataggacctgcc	5	14	1	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	64536390	A	C	64536390	3	2	29	1	0	0	0	0	1	0	0	0	15245	14	1	5	3282	5	SRGAP1	12	64536390	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	11649749	64536390	69315505	55	2144											
C1QTNF9B	387911	ucsc.edu	37	chr13	24465600	24465600	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagagctcacgtaagcatctCtggtgtgcagtatttttact	9	9	2	1	rs3864969	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	24465600	C	T	24465600	3	4	29	1	0	0	0	0	1	0	0	0	1990	913	32	4	174	4	C1QTNF9B	13	24465600	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10		24465600	90704278	56	2145											
PRMT5	10419	broad.mit.edu	37	chr14	23393288	23393288	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaatgagcccagaagcTcactgacaatgatgtctgct	9	11	2	4	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	23393288	T	C	23393288	3	2	29	1	0	0	0	0	1	0	0	0	12628	1551	54	2	633	2	PRMT5	14	23393288	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		23393288	83956252	57	2146											
AHNAK2	113146	broad.mit.edu	37	chr14	105412335	105412335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcagacaccccgaacgaCggcatcttgaacttgggcat	13	12	1	2	rs202104959	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	105412335	C	T	105412335	2	4	29	1	0	0	0	0	0	0	0	1	415	523	19	1		1	AHNAK2	14	105412335	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	82019047	105412335	1937205	58	2147											
EIF2AK4	440275	broad.mit.edu	37	chr15	40257897	40257897	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgtgcaggcagtgatgaAcaacttggaaaattagtcta	10	5	1	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	40257897	A	G	40257897	2	3	29	1	0	0	0	0	0	0	0	1	5036	40	2	2		2	EIF2AK4	15	40257897	Silent	SNP	A	TCGA-KM-8442-01A-11D-2310-10		40257897	62273495	59	2148											
DPP8	54878	bcgsc.ca	37	chr15	65743404	65743404	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tactggtatgtgcaaaatggAcattctcatccaggaaacca	8	9	1	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	65743404	A	G	65743404	3	3	29	1	0	0	0	0	1	0	0	0	4769	275	10	2	197	2	DPP8	15	65743404	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	25485507	65743404	36787988	60	2149											
ADAMTS7	11173	ucsc.edu;mdanderson.org	37	chr15	79092750	79092750	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtattgtagctcgtagaaGgcgggcgcgtctcggcgcac	16	11	1	1	rs7173267	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	79092750	G	C	79092750	2	2	29	1	0	0	0	0	0	0	0	1	271	987	35	5		5	ADAMTS7	15	79092750	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10	13349346	79092750	23438642	61	2150											
FSD2	123722	broad.mit.edu;mdanderson.org	37	chr15	83451563	83451563	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacctttatgaaatccaccTtctcctcgtgacacatctcc	4	15	2	3	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	83451563	T	C	83451563	3	2	29	1	0	0	0	0	1	0	0	0	6123	1609	56	2	1339	2	FSD2	15	83451563	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	4358813	83451563	19079829	62	2151											
WFIKKN1	117166	mdanderson.org	37	chr16	681284	681284	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgtccactcctgccgctcCtgctcctcctccggctgacc	7	21	0	1	rs8062289	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	681284	C	T	681284	2	4	29	1	0	0	0	0	0	0	0	1	17464	680	24	4		4	WFIKKN1	16	681284	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10		681284	89673469	63	2152											
CACNA1H	8912	mdanderson.org	37	chr16	1252259	1252259	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgccgctgccagcctcagActggccacagggctgggcac	13	16	1	1	rs9934839	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	1252259	A	G	1252259	2	3	29	1	0	0	0	0	0	0	0	1	2570	272	10	2		2	CACNA1H	16	1252259	Silent	SNP	A	TCGA-KM-8442-01A-11D-2310-10	570975	1252259	89102494	64	2153											
NME3	4832	mdanderson.org	37	chr16	1820992	1820992	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accacgtccagcccctgccaTacctgtgcggaggaacgggc	12	16	0	0	rs11890	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	1820992	T	A	1820992	2	1	29	1	0	0	0	0	0	0	0	1	10571	1393	49	5		5	NME3	16	1820992	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10	568733	1820992	88533761	65	2154											
KRTAP4-3	85290	mdanderson.org	37	chr17	39324139	39324139	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcggcagcaggtggtccTgcagcagctgggtttgcagc	19	10	0	0	rs12603046	bycluster;byfrequency;byhapmap	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	39324139	T	G	39324139	2	3	29	1	0	0	0	0	0	0	0	1	8614	1579	55	5		5	KRTAP4-3	17	39324139	Silent	SNP	T	TCGA-KM-8442-01A-11D-2310-10		39324139	41871071	66	2155											
GFAP	2670	ucsc.edu	37	chr17	42985455	42985455	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatcccgcatctccacggTcttcaccacgatgttcctct	5	18	4	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	42985455	T	C	42985455	3	2	29	1	0	0	0	0	1	0	0	0	6393	1667	58	2	72	2	GFAP	17	42985455	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10	3661316	42985455	38209755	67	2156											
TCF3	6929	mdanderson.org	37	chr19	1622116	1622116	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactgctgcccaccgggccGctaccgggcgggaggggcag	17	16	0	0	rs2240590	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	1622116	G	A	1622116	2	1	29	1	0	0	0	0	0	0	0	1	15798	1078	38	1		1	TCF3	19	1622116	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		1622116	57506867	68	2157											
IL12RB1	3594	mdanderson.org;bcgsc.ca	37	chr19	18188408	18188408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggggtctcccactccataCgcagctgcccggccaacttg	10	18	1	0	rs11575926	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	18188408	C	T	18188408	3	4	29	1	0	0	0	0	1	0	0	0	7687	536	19	1	1702	1	IL12RB1	19	18188408	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	16566292	18188408	40940575	69	2158											
FCGBP	8857	broad.mit.edu	37	chr19	40380652	40380652	+	Frame_Shift_Del	DEL	A	A	-													gggtgccgacaggctcgggcAgctcccaggacaggagtcac					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		-	40380652	A	-	40380652	7	5	29	1	0	1	0	1	0	0	0	0	5827	188	7	0	5610	0	FCGBP	19	40380652	Frame_Shift_Del	DEL	A	TCGA-KM-8442-01A-11D-2310-10	22192244	40380652	18748331	70	2159											
MAP3K10	4294	hgsc.bcm.edu;ucsc.edu	37	chr19	40719458	40719458	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaggatggaggcagcagCgtgcccccttccccctactc	12	16	0	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	40719458	C	T	40719458	2	4	29	1	0	0	0	0	0	0	0	1	9321	767	27	1		1	MAP3K10	19	40719458	Silent	SNP	C	TCGA-KM-8442-01A-11D-2310-10	338806	40719458	18409525	71	2160											
CYP2A6	1548	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	41354576	41354576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctcctggatgcgctcctCgatgcctcgcttgcccaccc	8	20	0	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	41354576	C	T	41354576	3	4	29	1	0	0	0	0	1	0	0	0	4193	893	31	1	1076	1	CYP2A6	19	41354576	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	635118	41354576	17774407	72	2161											
C20orf166	128826	mdanderson.org	37	chr20	61162267	61162267	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtggagaggacccagcaggTggcgcggggagagcccggct	20	11	0	2	rs6062251	byfrequency	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	61162267	T	C	61162267	3	2	29	1	0	0	0	0	1	0	0	0	2115	1696	59	2	86	2	C20orf166	20	61162267	Missense_Mutation	SNP	T	TCGA-KM-8442-01A-11D-2310-10		61162267	1863253	73	2162											
BAGE2	85319	mdanderson.org	37	chr21	11058197	11058197	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatgtgttctggacaaaGcaggaagatgtgactgaaat	12	5	2	3	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	11058197	G	A	11058197	2	1	29	1	0	0	0	0	0	0	0	1	1296	963	34	4		4	BAGE2	21	11058197	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		11058197	37071698	74	2163											
SON	6651	broad.mit.edu	37	chr21	34927419	34927420	+	Frame_Shift_Ins	INS	-	-	C													cgccgcagccgcacccccagINSccgccgcagccgcaccccca					novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		C	34927420	-	C	34927419	7	5	29	1	0	1	1	0	0	0	0	0	15024	971	34	0	5892	0	SON	21	34927419	Frame_Shift_Ins	INS	-	TCGA-KM-8442-01A-11D-2310-10	23869222	34927419	13202476	75	2164											
DGCR8	54487	broad.mit.edu	37	chr22	20094117	20094117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgttttctcttaaagaaAccatgggatgggtgacacgt	11	7	2	2	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		G	20094117	A	G	20094117	3	3	29	1	0	0	0	0	1	0	0	0	4501	43	2	2	1930	2	DGCR8	22	20094117	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10		20094117	31210449	76	2165											
PIWIL3	440822	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	25124310	25124310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttttatgctgtcatatctaCgtttgtcatcattgggcagg	9	7	4	0	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	25124310	C	T	25124310	3	4	29	1	0	0	0	0	1	0	0	0	12039	536	19	1	910	1	PIWIL3	22	25124310	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	5030193	25124310	26180256	77	2166											
MOV10L1	54456	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	50581577	50581577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctgagtggtgactgccGtcccctcccgtatattctct	9	13	2	2	rs140536899		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	50581577	G	A	50581577	3	1	29	1	0	0	0	0	1	0	0	0	9797	1145	40	1	2392	1	MOV10L1	22	50581577	Missense_Mutation	SNP	G	TCGA-KM-8442-01A-11D-2310-10	25457267	50581577	722989	78	2167											
CACNA1F	778	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	49084509	49084509	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccctcacccactcaggacGccaagcacaaggttgaggac	10	15	2	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		A	49084509	G	A	49084509	2	1	29	1	0	0	0	0	0	0	0	1	2568	1074	38	1		1	CACNA1F	23	49084509	Silent	SNP	G	TCGA-KM-8442-01A-11D-2310-10		49084509	106186051	79	2168											
SLC7A3	84889	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	70145693	70145693	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggacatagagagtgccgggAtcaaggtctacagttttggc	14	7	2	1	novel		TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	70145693	A	T	70145693	3	4	29	1	0	0	0	0	1	0	0	0	14796	330	12	5	33	5	SLC7A3	23	70145693	Missense_Mutation	SNP	A	TCGA-KM-8442-01A-11D-2310-10	21061184	70145693	85124867	80	2169											
PCDH11X	27328	mdanderson.org	37	chrX	91134112	91134112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcctgaaactcccctgaattCgaagcaccacatcatccaag	6	15	1	2	rs2563388	bysubmitter	TCGA-KM-8442-01A-11D-2310-10	TCGA-KM-8442-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9fb73d89-f7c4-47b2-810b-3ce37cd8a3c9	6fc570c7-dca7-4892-bbf8-94afd186a057		T	91134112	C	T	91134112	3	4	29	1	0	0	0	0	1	0	0	0	11587	893	31	1	2879	1	PCDH11X	23	91134112	Missense_Mutation	SNP	C	TCGA-KM-8442-01A-11D-2310-10	20988419	91134112	64136448	81	2170											
ZBTB48	3104	ucsc.edu	37	chr1	6646821	6646821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgcgggtgcacatggtgTctcacacaggggagatgccc	15	11	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	6646821	T	C	6646821	3	2	30	1	0	0	0	0	1	0	0	0	17654	1667	58	2	1125	2	ZBTB48	1	6646821	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		6646821	242603800	1	2171											
HSPG2	3339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	22207292	22207292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccacgggccaactcgtagcGcacgttgtaacgcagggagc	14	13	0	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	22207292	G	A	22207292	3	1	30	1	0	0	0	0	1	0	0	0	7491	1087	38	1	11652	1	HSPG2	1	22207292	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	15560471	22207292	227043329	2	2172											
ASXL2	55252	broad.mit.edu;hgsc.bcm.edu	37	chr2	25966455	25966455	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagctgctggcaaagtgctCgagggtggagctgatccagc	16	9	0	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	25966455	C	T	25966455	2	4	30	1	0	0	0	0	0	0	0	1	1071	871	31	1		1	ASXL2	2	25966455	Silent	SNP	C	TCGA-KM-8443-01A-11D-2310-10		25966455	217232918	3	2173											
CCT7	10574	ucsc.edu	37	chr2	73467611	73467611	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacaattctgaaacttctTgatgttgtccatcctgcagc	7	12	2	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	73467611	T	C	73467611	2	2	30	1	0	0	0	0	0	0	0	1	2988	1799	63	4		4	CCT7	2	73467611	Silent	SNP	T	TCGA-KM-8443-01A-11D-2310-10	47501156	73467611	169731762	4	2174											
NBEAL2	23218	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	47041771	47041771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actccttcgccactggatggGccgcggccctttcctgctgc	11	17	0	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	47041771	G	A	47041771	2	1	30	1	0	0	0	0	0	0	0	1	10267	1190	42	3		3	NBEAL2	3	47041771	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10		47041771	150980659	5	2175											
BSN	8927	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	49691694	49691694	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catctgacgcctccagccagAccaggatggtacatgccagt	10	14	1	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	49691694	A	T	49691694	3	4	30	1	0	0	0	0	1	0	0	0	1538	275	10	5	4723	5	BSN	3	49691694	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	2649923	49691694	148330736	6	2176											
DRD3	1814	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	113890761	113890761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatagtaggcatgtgggcGggcctggctggcacctgtgg	19	9	0	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	113890761	G	A	113890761	3	1	30	1	0	0	0	0	1	0	0	0	4795	1116	39	1	1147	1	DRD3	3	113890761	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	64199067	113890761	84131669	7	2177											
TIGIT	201633	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	114018494	114018494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgcttggagccatggccGcgacgctggtggtcatctgc	14	12	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	114018494	G	A	114018494	3	1	30	1	0	0	0	0	1	0	0	0	16006	1087	38	1	452	1	TIGIT	3	114018494	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	127733	114018494	84003936	8	2178											
KLF15	28999	broad.mit.edu	37	chr3	126071789	126071789	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggccgtgccggtggcGgctgcaggaaaggaacacag	18	11	0	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	126071789	G	A	126071789	5	1	30	1	0	0	0	0	0	0	1	0	8404	1130	39	1		1	KLF15	3	126071789	Splice_Site	SNP	G	TCGA-KM-8443-01A-11D-2310-10	12053295	126071789	71950641	9	2179											
CLCN2	1181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	184075816	184075816	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgaccttagctataaaggtCttgagtgtgaggtattcttt	10	5	2	3	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	184075816	C	G	184075816	3	3	30	1	0	0	0	0	1	0	0	0	3492	912	32	5	2227	5	CLCN2	3	184075816	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	58004027	184075816	13946614	10	2180											
MUC4	4585	mdanderson.org	37	chr3	195515460	195515460	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtggatactgaggaagcAtcggtgacatgaagaggggt	16	6	0	4	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	195515460	A	G	195515460	2	3	30	1	0	0	0	0	0	0	0	1	10056	214	8	4		4	MUC4	3	195515460	Silent	SNP	A	TCGA-KM-8443-01A-11D-2310-10	11439644	195515460	2506970	11	2181											
TNK2	10188	broad.mit.edu	37	chr3	195594314	195594314	+	Frame_Shift_Del	DEL	G	G	-													gcagccgagcagtggccctcGggggtggtggccgggcccct					novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		-	195594314	G	-	195594314	7	5	30	1	0	1	0	1	0	0	0	0	16422	1116	39	0	322	0	TNK2	3	195594314	Frame_Shift_Del	DEL	G	TCGA-KM-8443-01A-11D-2310-10	78854	195594314	2428116	12	2182											
UGT2B4	7363	mdanderson.org	37	chr4	70361420	70361420	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgaagatgccaatacagTcacctcatgacctctctgga	8	12	3	3	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	70361420	T	C	70361420	3	2	30	1	0	0	0	0	1	0	0	0	17067	1667	58	2	1450	2	UGT2B4	4	70361420	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		70361420	120792856	13	2183											
SNX25	83891	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	186283807	186283807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcaaaatgcccgccacgGtataataaaaatattcaatg	6	9	1	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	186283807	G	A	186283807	3	1	30	1	0	0	0	0	1	0	0	0	14994	1261	44	3	2450	3	SNX25	4	186283807	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	115922387	186283807	4870469	14	2184											
KIAA0947	23379	broad.mit.edu;hgsc.bcm.edu	37	chr5	5463283	5463284	+	Frame_Shift_Ins	INS	-	-	TA													aattctgaagattgcaatggINStaaagatactggcagtttat					novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		TA	5463284	-	TA	5463283	7	5	30	1	0	1	1	0	0	0	0	0	8263	1261	44	0	3886	0	KIAA0947	5	5463283	Frame_Shift_Ins	INS	-	TCGA-KM-8443-01A-11D-2310-10		5463283	175451977	15	2185	61	2									
KIAA0947	23379	bcgsc.ca	37	chr5	5463284	5463285	+	Frame_Shift_Ins	INS	-	-	TA													attctgaagattgcaatggtINSaaagatactggcagtttatt					novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		TA	5463285	-	TA	5463284	7	5	30	1	0	1	1	0	0	0	0	0	8263	1625	57	0	3887	0	KIAA0947	5	5463284	Frame_Shift_Ins	INS	-	TCGA-KM-8443-01A-11D-2310-10	1	5463284	175451976	16	2186	61	2									
TAS2R1	50834	hgsc.bcm.edu;ucsc.edu	37	chr5	9629359	9629359	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tatataccaatcacaaggatGaagaacagaaagatgaacct	7	7	1	5	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	9629359	G	A	9629359	2	1	30	1	0	0	0	0	0	0	0	1	15666	1281	45	4		4	TAS2R1	5	9629359	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10	4166075	9629359	171285901	17	2187											
GPBP1	65056	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	56545266	56545266	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caaattcctcttctcctgttGacaaacttaatcagcagcct	4	13	3	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	56545266	G	A	56545266	3	1	30	1	0	0	0	0	1	0	0	0	6652	1290	45	4	886	4	GPBP1	5	56545266	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	46915907	56545266	124369994	18	2188											
GPBP1	65056	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	56545374	56545374	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acagagtagaagaggaacatGaagatgaaagccgtgctggc	14	6	0	6	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	56545374	G	A	56545374	3	1	30	1	0	0	0	0	1	0	0	0	6652	1291	45	4	994	4	GPBP1	5	56545374	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	108	56545374	124369886	19	2189											
MAP1B	4131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	71493836	71493836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atatggagggtgtggcctcaGtgtccacagcctcagtggct	14	10	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	71493836	G	A	71493836	3	1	30	1	0	0	0	0	1	0	0	0	9305	1029	36	4	4672	4	MAP1B	5	71493836	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	14948462	71493836	109421424	20	2190											
RASA1	5921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	86675579	86675579	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	catcaaagttagaaaaaaatGaagatgtgaacactaattta	6	4	1	4	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	86675579	G	A	86675579	3	1	30	1	0	0	0	0	1	0	0	0	13152	1291	45	4	2601	4	RASA1	5	86675579	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	15181743	86675579	94239681	21	2191											
EBF1	1879	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	158526463	158526463	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgctgcttccactccgttgGatgctttcctgaatcccaaa	7	13	0	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	158526463	G	T	158526463	2	4	30	1	0	0	0	0	0	0	0	1	4917	1164	41	5		5	EBF1	5	158526463	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10	71850884	158526463	22388797	22	2192											
FAM193B	54540	bcgsc.ca	37	chr5	176966072	176966072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtccattttgagaagggCcttcttcccagcctttgcgt	9	13	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	176966072	C	T	176966072	3	4	30	1	0	0	0	0	1	0	0	0	5570	754	26	3		3	FAM193B	5	176966072	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	18439609	176966072	3949188	23	2193											
PPP1R11	6992	broad.mit.edu	37	chr6	30035207	30035207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catggccgaggcaggggctgGgctgagcgagaccgtcactg	18	11	1	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	30035207	G	A	30035207	3	1	30	1	0	0	0	0	1	0	0	0	12438	1232	43	3	22	3	PPP1R11	6	30035207	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		30035207	141079860	24	2194											
SP8	221833	ucsc.edu	37	chr7	20824901	20824901	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgcaccttggagatgaAcaccggctggtgggagccgt	17	9	0	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	20824901	A	G	20824901	3	3	30	1	0	0	0	0	1	0	0	0	15068	43	2	2	995	2	SP8	7	20824901	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		20824901	138313762	25	2195											
MYL7	58498	broad.mit.edu;hgsc.bcm.edu	37	chr7	44179423	44179423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccgctggggtcaaacatgCggaaggcactcaggatggct	15	10	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	44179423	C	T	44179423	3	4	30	1	0	0	0	0	1	0	0	0	10131	768	27	1	204	1	MYL7	7	44179423	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	23354522	44179423	114959240	26	2196											
CACNA2D1	781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	81641523	81641523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcttagctttgtctcctgCtaaaaccattggtcttccca	6	12	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	81641523	C	T	81641523	3	4	30	1	0	0	0	0	1	0	0	0	2573	797	28	4	2066	4	CACNA2D1	7	81641523	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	37462100	81641523	77497140	27	2197											
TOX	9760	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	60031454	60031454	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agagcgttcaccttgttgcaAtagtaggggtccaggcaggg	15	8	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	60031454	A	T	60031454	4	4	30	1	0	0	0	0	0	1	0	0	16482	108	4	5	1523	5	TOX	8	60031454	Nonsense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		60031454	86332568	28	2198											
EYA1	2138	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	72211306	72211306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggatctgtaactgcttGgctggtgatgccagatggcg	16	7	1	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	72211306	G	T	72211306	3	4	30	1	0	0	0	0	1	0	0	0	5368	1357	47	5	1016	5	EYA1	8	72211306	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	12179852	72211306	74152716	29	2199											
GEM	2669	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	95264412	95264412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaatcaggtatgcgtcccCgacctgcatgcagtggtcat	11	12	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	95264412	C	T	95264412	3	4	30	1	0	0	0	0	1	0	0	0	6385	652	23	1	450	1	GEM	8	95264412	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	23053106	95264412	51099610	30	2200											
PRSS3	5646	mdanderson.org	37	chr9	33797881	33797881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagtcctggaggggaatgaGcagttcatcaatgcggccaa	13	8	2	1	rs144235891	byfrequency	TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	33797881	G	A	33797881	2	1	30	1	0	0	0	0	0	0	0	1	12711	962	34	4		4	PRSS3	9	33797881	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10		33797881	107415550	31	2201											
TLE1	7088	broad.mit.edu	37	chr9	84199172	84199172	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagccagtgactatgtactTatcatccacagagatgtcac	8	11	2	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	84199172	T	C	84199172	3	2	30	1	0	0	0	0	1	0	0	0	16042	1763	61	4	62	4	TLE1	9	84199172	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	50401291	84199172	57014259	32	2202											
OR1L1	26737	broad.mit.edu	37	chr9	125424320	125424320	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcttagcctttggaaAcacagacagttacctgctag	7	10	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	125424320	A	G	125424320	3	3	30	1	0	0	0	0	1	0	0	0	11042	43	2	2	328	2	OR1L1	9	125424320	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	41225148	125424320	15789111	33	2203											
ABL1	25	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	133748274	133748274	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccgggagcccccgttctAtatcatcactgagttcatga	8	14	4	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	133748274	A	G	133748274	3	3	30	1	0	0	0	0	1	0	0	0	92	449	16	4	1097	4	ABL1	9	133748274	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	8323954	133748274	7465157	34	2204											
LCN10	414332	broad.mit.edu	37	chr9	139636409	139636409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgcccccagcttcctcttgtCcctggccggcaagaatccct	8	19	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	139636409	C	T	139636409	3	4	30	1	0	0	0	0	1	0	0	0	8743	855	30	3	441	3	LCN10	9	139636409	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	5888135	139636409	1577022	35	2205											
TUBB8	347688	broad.mit.edu	37	chr10	93637	93637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtggtgaccccactcatgGtagcagacaccaggtggttc	12	12	1	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	93637	G	A	93637	3	1	30	1	0	0	0	0	1	0	0	0	16867	1261	44	3	643	3	TUBB8	10	93637	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		93637	135441110	36	2206											
CDH23	64072	ucsc.edu	37	chr10	73572329	73572329	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctaccggagaacctgagtgAgatcgccgacctgtggaaca	12	12	0	3	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	73572329	A	G	73572329	3	3	30	1	0	0	0	0	1	0	0	0	3137	304	11	2	10155	2	CDH23	10	73572329	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	73478692	73572329	61962418	37	2207											
AMPD3	272	ucsc.edu	37	chr11	10506508	10506508	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggagcaccaggagccgcAcagcctaccctaccccgacc	10	19	0	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	10506508	A	G	10506508	3	3	30	1	0	0	0	0	1	0	0	0	587	159	6	2	796	2	AMPD3	11	10506508	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		10506508	124500008	38	2208											
RASSF10	644943	ucsc.edu	37	chr11	13032159	13032159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagttgctggagcgcCtttcagccgagattcaggag	16	8	2	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	13032159	C	T	13032159	3	4	30	1	0	0	0	0	1	0	0	0	13177	681	24	4	1366	4	RASSF10	11	13032159	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	2525651	13032159	121974357	39	2209											
SYT7	9066	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	61291299	61291299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggagaagccccgtacCtgatgtgcccccgatgtcca	11	15	0	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	61291299	C	A	61291299	3	1	30	1	0	0	0	0	1	0	0	0	15580	695	24	5	316	5	SYT7	11	61291299	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	48259140	61291299	73715217	40	2210											
PTS	5805	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	112101359	112101359	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tattctttagattgaccctgCtacgggaatggttatgaatc	9	7	1	3	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	112101359	C	G	112101359	3	3	30	1	0	0	0	0	1	0	0	0	12910	797	28	5	211	5	PTS	11	112101359	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	50810060	112101359	22905157	41	2211											
KRT76	51350	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr12	53169235	53169235	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctccaggttccccctcTcccctagaagtgaatctagc	6	18	2	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	53169235	T	C	53169235	3	2	30	1	0	0	0	0	1	0	0	0	8550	1551	54	2	1196	2	KRT76	12	53169235	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		53169235	80682660	42	2212											
ITGA5	3678	broad.mit.edu	37	chr12	54812840	54812840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccgagagtactgctgggGcctccgcgtctaagttgaag	14	12	1	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	54812840	G	T	54812840	3	4	30	1	0	0	0	0	1	0	0	0	7940	1203	42	5	3126	5	ITGA5	12	54812840	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	1643605	54812840	79039055	43	2213											
TBC1D15	64786	broad.mit.edu	37	chr12	72314554	72314554	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaatttccatcttcttcTctgttgtgctattctggaat	5	9	4	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	72314554	T	C	72314554	3	2	30	1	0	0	0	0	1	0	0	0	15705	1551	54	2	1880	2	TBC1D15	12	72314554	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	17501714	72314554	61537341	44	2214											
DDX55	57696	broad.mit.edu;mdanderson.org	37	chr12	124092052	124092052	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcctgtcgcatttcacgaAgcacttccccgagttcaggt	10	13	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	124092052	A	G	124092052	3	3	30	1	0	0	0	0	1	0	0	0	4405	72	3	2	334	2	DDX55	12	124092052	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	51777498	124092052	9759843	45	2215											
CHFR	55743	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	133435693	133435693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctggcagatgatgcatGtcagcgtctcctccatcttg	11	12	3	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	133435693	G	A	133435693	3	1	30	1	0	0	0	0	1	0	0	0	3366	1377	48	4	1130	4	CHFR	12	133435693	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	9343641	133435693	416202	46	2216											
SACS	26278	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	23915268	23915268	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgaataattcttttctctTtctcactgctatcggttaaa	4	9	3	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	23915268	T	G	23915268	3	3	30	1	0	0	0	0	1	0	0	0	13899	1841	64	5	10996	5	SACS	13	23915268	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		23915268	91254610	47	2217											
HOMEZ	57594	broad.mit.edu	37	chr14	23745955	23745955	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctattccaataccaacttgcTctggagctggcactggagga	10	11	1	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	23745955	T	C	23745955	3	2	30	1	0	0	0	0	1	0	0	0	7339	1551	54	2	1174	2	HOMEZ	14	23745955	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10		23745955	83603585	48	2218											
DTWD1	56986	broad.mit.edu	37	chr15	49935536	49935536	+	Frame_Shift_Del	DEL	C	C	-													tttttttgacagggttgttaCaagttgagttgaaaacaaga					novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		-	49935536	C	-	49935536	7	5	30	1	0	1	0	1	0	0	0	0	4828	479	17	0	690	0	DTWD1	15	49935536	Frame_Shift_Del	DEL	C	TCGA-KM-8443-01A-11D-2310-10		49935536	52595856	49	2219											
SIN3A	25942	broad.mit.edu	37	chr15	75682085	75682085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgaatcttcatactgtgAtgagtctatgttgccatcca	8	9	3	3	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	75682085	A	G	75682085	3	3	30	1	0	0	0	0	1	0	0	0	14423	333	12	4	916	4	SIN3A	15	75682085	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	25746549	75682085	26849307	50	2220											
BCAR1	9564	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr16	75270827	75270827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctccacactggggggcaCgtcatacacctccagcaacg	9	16	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	75270827	C	T	75270827	3	4	30	1	0	0	0	0	1	0	0	0	1352	536	19	1	1817	1	BCAR1	16	75270827	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10		75270827	15083926	51	2221											
SMCHD1	23347	mdanderson.org	37	chr18	2707619	2707619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaattattgcctaatgagGttaggcctgctggaacccct	10	9	0	2	rs2276092	byfrequency	TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	2707619	G	A	2707619	3	1	30	1	0	0	0	0	1	0	0	0	14886	1261	44	3	2184	3	SMCHD1	18	2707619	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		2707619	75369629	52	2222											
SERPINB3	6317	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	61323171	61323171	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattcccatggttctcaacGtgtccttgaggtcatagctc	8	13	2	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	61323171	G	A	61323171	3	1	30	1	0	0	0	0	1	0	0	0	14199	1145	40	1	283	1	SERPINB3	18	61323171	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	58615552	61323171	16754077	53	2223											
SEMA6B	10501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	4557004	4557004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacacgtttatgtcgctggGgttagatctccaggtcagct	11	10	2	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	4557004	G	A	4557004	3	1	30	1	0	0	0	0	1	0	0	0	14137	1232	43	3	2390	3	SEMA6B	19	4557004	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		4557004	54571979	54	2224											
CLEC4G	339390	ucsc.edu	37	chr19	7796207	7796207	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgcgcgctccgtggaggcTgaggagagaggctcctgcag	18	12	0	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	7796207	T	C	7796207	5	2	30	1	0	0	0	0	0	0	1	0	3546	1594	55	2	744	2	CLEC4G	19	7796207	Splice_Site	SNP	T	TCGA-KM-8443-01A-11D-2310-10	3239203	7796207	51332776	55	2225											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	8615207	8615207	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctcctgcagtcgcccgctgTcaatgcccagcaggtaggcg	12	15	2	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	8615207	T	A	8615207	3	1	30	1	0	0	0	0	1	0	0	0	10151	1667	58	5	2434	5	MYO1F	19	8615207	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	819000	8615207	50513776	56	2226											
RFX1	5989	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	14076447	14076447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagcactcactggggatggGccgcagcacgtcgggaatga	16	11	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	14076447	G	A	14076447	3	1	30	1	0	0	0	0	1	0	0	0	13354	1203	42	3	863	3	RFX1	19	14076447	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	5461240	14076447	45052536	57	2227											
CYP4F2	8529	broad.mit.edu	37	chr19	16000303	16000303	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcttggaggaagtcatcaAcaccctggctagggagagtg	15	8	2	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	16000303	A	G	16000303	3	3	30	1	0	0	0	0	1	0	0	0	4219	43	2	2	742	2	CYP4F2	19	16000303	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	1923856	16000303	43128680	58	2228											
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	38976258	38976258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcctggagctgtcggagCgcctggacctgcagcgcttc	13	14	0	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	38976258	C	T	38976258	3	4	30	1	0	0	0	0	1	0	0	0	13863	768	27	1	5097	1	RYR1	19	38976258	Missense_Mutation	SNP	C	TCGA-KM-8443-01A-11D-2310-10	22975955	38976258	20152725	59	2229											
RSPH6A	81492	ucsc.edu	37	chr19	46318402	46318402	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcccggaggctgctgggcAgggcgctcagggtagggcgg	22	11	1	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	46318402	A	G	46318402	2	3	30	1	0	0	0	0	0	0	0	1	13802	175	7	2		2	RSPH6A	19	46318402	Silent	SNP	A	TCGA-KM-8443-01A-11D-2310-10	7342144	46318402	12810581	60	2230											
EHD2	30846	broad.mit.edu;bcgsc.ca	37	chr19	48220038	48220038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggacgcagacttcgacGgcaagcccatggtgctggtg	16	10	0	1	rs34140460	byfrequency	TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	48220038	G	A	48220038	3	1	30	1	0	0	0	0	1	0	0	0	5015	1116	39	1	171	1	EHD2	19	48220038	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10	1901636	48220038	10908945	61	2231											
MX2	4600	bcgsc.ca	37	chr21	42770882	42770882	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagaaggcgaccgaggAgctgcggcgttgcggggctg	18	12	0	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	42770882	A	G	42770882	3	3	30	1	0	0	0	0	1	0	0	0	10076	304	11	2	1238	2	MX2	21	42770882	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10		42770882	5359013	62	2232											
MCM3AP	8888	ucsc.edu	37	chr21	47697480	47697480	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctggtcaagcaggcggtActtctccttggatgtctcag	11	11	4	0	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	47697480	A	G	47697480	3	3	30	1	0	0	0	0	1	0	0	0	9465	391	14	2	4219	2	MCM3AP	21	47697480	Missense_Mutation	SNP	A	TCGA-KM-8443-01A-11D-2310-10	4926598	47697480	432415	63	2233											
CSF2RB	1439	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	37334203	37334203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaccaaggaacaatcctGtcccccctgaggccaaaagc	9	15	1	1	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		T	37334203	G	T	37334203	3	4	30	1	0	0	0	0	1	0	0	0	3966	1377	48	5	2403	5	CSF2RB	22	37334203	Missense_Mutation	SNP	G	TCGA-KM-8443-01A-11D-2310-10		37334203	13970363	64	2234											
TTLL1	25809	broad.mit.edu	37	chr22	43459837	43459837	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accccgtgtttctggatggcGacgttggtgagatgaacgaa	14	8	1	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	43459837	G	A	43459837	2	1	30	1	0	0	0	0	0	0	0	1	16828	1045	37	1		1	TTLL1	22	43459837	Silent	SNP	G	TCGA-KM-8443-01A-11D-2310-10	6125634	43459837	7844729	65	2235											
PRR5-ARHGAP8	553158	ucsc.edu	37	chr22	45243892	45243892	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttccggagatccgccagcgTgcagaccgtccgcgagatcc	13	15	0	3	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		C	45243892	T	C	45243892	3	2	30	1	0	0	0	0	1	0	0	0	12690	1696	59	2	1122	2	PRR5-ARHGAP8	22	45243892	Missense_Mutation	SNP	T	TCGA-KM-8443-01A-11D-2310-10	1784055	45243892	6060674	66	2236											
NUP50	10762	mdanderson.org	37	chr22	45574342	45574342	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctgacacctatctttaaAgactatgagaaatatttagc	6	7	2	3	rs13209197		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		G	45574342	A	G	45574342	2	3	30	1	0	0	0	0	0	0	0	1	10845	69	3	2		2	NUP50	22	45574342	Silent	SNP	A	TCGA-KM-8443-01A-11D-2310-10	330450	45574342	5730224	67	2237											
MAGEC1	9947	mdanderson.org	37	chrX	140994087	140994087	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtacttttgagggttttccCcagtctcctctccagattcc	7	13	2	2	novel		TCGA-KM-8443-01A-11D-2310-10	TCGA-KM-8443-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c00de7a0-0b09-4e07-988c-ef2a7f8e932a	982dbbf8-fdf8-4653-91ed-2e857e1a7708		A	140994087	C	A	140994087	2	1	30	1	0	0	0	0	0	0	0	1	9257	610	22	5		5	MAGEC1	23	140994087	Silent	SNP	C	TCGA-KM-8443-01A-11D-2310-10		140994087	14276473	68	2238											
PLEKHG5	57449	ucsc.edu	37	chr1	6531590	6531590	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccgggctgtagcagcgcTcgcgtgcgccgcgccttctc	13	18	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	6531590	T	C	6531590	2	2	31	1	0	0	0	0	0	0	0	1	12153	1538	54	2		2	PLEKHG5	1	6531590	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10		6531590	242719031	1	2239											
SFPQ	6421	ucsc.edu;bcgsc.ca	37	chr1	35658491	35658491	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcggaggcttagggccgcTctggcccgggccaggaccca	16	14	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	35658491	T	C	35658491	3	2	31	1	0	0	0	0	1	0	0	0	14257	1551	54	2	2003	2	SFPQ	1	35658491	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	29126901	35658491	213592130	2	2240											
CAP1	10487	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	40537164	40537164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttcaagaccctatggaacGggcagaagttggtcaccaca	11	10	2	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	40537164	G	A	40537164	3	1	31	1	0	0	0	0	1	0	0	0	2644	1116	39	1	1433	1	CAP1	1	40537164	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	4878673	40537164	208713457	3	2241											
TCHHL1	126637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	152060616	152060616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatttctcaggagctgagGcatctttacaaactcaggag	10	9	3	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	152060616	G	A	152060616	3	1	31	1	0	0	0	0	1	0	0	0	15805	1203	42	3	2718	3	TCHHL1	1	152060616	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	111523452	152060616	97190005	4	2242											
HRNR	388697	mdanderson.org	37	chr1	152187510	152187510	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagccagacccatgttggcCgtggctggaggagtgccccg	16	12	0	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	152187510	C	T	152187510	3	4	31	1	0	0	0	0	1	0	0	0	7417	652	23	1	1961	1	HRNR	1	152187510	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	126894	152187510	97063111	5	2243											
RC3H1	149041	mdanderson.org;bcgsc.ca	37	chr1	173921192	173921192	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttggttccaatgtaggagcCgatggtgtcacatgaccagg	13	8	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	173921192	C	A	173921192	3	1	31	1	0	0	0	0	1	0	0	0	13258	652	23	5	974	5	RC3H1	1	173921192	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	21733682	173921192	75329429	6	2244											
OR2M2	391194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	248343361	248343361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caatcacagcccaccacacaCgttcctcttctttctggtcc	4	18	4	0	rs146796261	alternate_allele	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	248343361	C	T	248343361	3	4	31	1	0	0	0	0	1	0	0	0	11089	536	19	1	76	1	OR2M2	1	248343361	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	74422169	248343361	907260	7	2245											
ARHGAP15	55843	broad.mit.edu	37	chr2	143959765	143959765	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtcattcctccattggaAcaactggtgagtgtttaagt	10	7	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	143959765	A	G	143959765	2	3	31	1	0	0	0	0	0	0	0	1	868	40	2	2		2	ARHGAP15	2	143959765	Silent	SNP	A	TCGA-KM-8476-01A-11D-2310-10		143959765	99239608	8	2246											
OR6B3	150681	broad.mit.edu	37	chr2	240984793	240984793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaggctctccagcagcCggtggccgaggggatgcgca	17	11	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	240984793	C	T	240984793	3	4	31	1	0	0	0	0	1	0	0	0	11268	652	23	1	301	1	OR6B3	2	240984793	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	97025028	240984793	2214580	9	2247											
SLC4A7	9497	mdanderson.org	37	chr3	27444780	27444780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgagtaatataacacacaAggctgcttgcatctgttgca	8	9	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	27444780	A	G	27444780	3	3	31	1	0	0	0	0	1	0	0	0	14756	72	3	2	1544	2	SLC4A7	3	27444780	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10		27444780	170577650	10	2248											
LAMB2	3913	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	49162828	49162828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acgctggcagcggtcacagcGaagcccaaaggcaccagttc	12	14	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	49162828	G	A	49162828	3	1	31	1	0	0	0	0	1	0	0	0	8673	1058	37	1	2874	1	LAMB2	3	49162828	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	21718048	49162828	148859602	11	2249											
CYB561D2	11068	broad.mit.edu;bcgsc.ca	37	chr3	50391044	50391044	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcttgctgggcatgtgcTcactctggttcactgcctct	10	14	5	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	50391044	T	C	50391044	3	2	31	1	0	0	0	0	1	0	0	0	4152	1551	54	2	548	2	CYB561D2	3	50391044	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	1228216	50391044	147631386	12	2250											
DNAH1	25981	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	52365211	52365211	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaatggtgcgaggtcggcGtcctggactacgacgaggag	16	9	0	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	52365211	G	A	52365211	3	1	31	1	0	0	0	0	1	0	0	0	4634	1145	40	1	941	1	DNAH1	3	52365211	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	1974167	52365211	145657219	13	2251											
DNAH12	201625	broad.mit.edu	37	chr3	57438684	57438684	+	Frame_Shift_Del	DEL	A	A	-													atacgaactcgggcattctcAttttcccaataatatcggag					novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		-	57438684	A	-	57438684	7	5	31	1	0	1	0	1	0	0	0	0	4637	214	8	0	5815	0	DNAH12	3	57438684	Frame_Shift_Del	DEL	A	TCGA-KM-8476-01A-11D-2310-10	5073473	57438684	140583746	14	2252											
DCBLD2	131566	mdanderson.org	37	chr3	98620083	98620083	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggagcgggagagggggaGcgcggcccaggcgggggcgg	27	8	0	1	rs190637453		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	98620083	G	C	98620083	3	2	31	1	0	0	0	0	1	0	0	0	4313	971	34	5	2303	5	DCBLD2	3	98620083	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	41181399	98620083	99402347	15	2253											
ABTB1	80325	hgsc.bcm.edu	37	chr3	127396057	127396057	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtgctgaccatcgagccCccacctgcagacccccgcct	9	19	0	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	127396057	C	T	127396057	2	4	31	1	0	0	0	0	0	0	0	1	102	610	22	3		3	ABTB1	3	127396057	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	28775974	127396057	70626373	16	2254											
TRPC1	7220	broad.mit.edu	37	chr3	142525034	142525034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaataagggatttacttgGctttcggacttctaaatatg	9	5	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	142525034	G	T	142525034	3	4	31	1	0	0	0	0	1	0	0	0	16683	1203	42	5	2283	5	TRPC1	3	142525034	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	15128977	142525034	55497396	17	2255											
TP63	8626	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	189455532	189455532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	atttttgtccttttaagtttCgtagaaaccccagctcattt	5	9	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	189455532	C	A	189455532	3	1	31	1	0	0	0	0	1	0	0	0	16497	883	31	5	72	5	TP63	3	189455532	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	46930498	189455532	8566898	18	2256											
MUC4	4585	mdanderson.org	37	chr3	195507155	195507155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggacactgaggaagCgtcggtgacaagaagagggg	17	7	0	4	rs202193697		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	195507155	C	T	195507155	3	4	31	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195507155	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	6051623	195507155	2515275	19	2257											
MUC4	4585	mdanderson.org	37	chr3	195512646	195512646	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctagtgacaggaagaggCgtggtgtcacctgtggatgc	18	7	1	2	rs3107750	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	195512646	C	G	195512646	2	3	31	1	0	0	0	0	0	0	0	1	10056	755	27	5		5	MUC4	3	195512646	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	5491	195512646	2509784	20	2258											
GK2	2712	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	80327734	80327734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctccaattagcattaCcatgctactcactataaaaa	3	11	2	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	80327734	C	T	80327734	3	4	31	1	0	0	0	0	1	0	0	0	6477	507	18	3	44	3	GK2	4	80327734	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		80327734	110826542	21	2259											
FNIP2	57600	broad.mit.edu;mdanderson.org	37	chr4	159780275	159780275	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aatccagctatggttaggagGaagaaaattgccataagcat	10	6	0	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	159780275	G	A	159780275	2	1	31	1	0	0	0	0	0	0	0	1	6025	1165	41	3		3	FNIP2	4	159780275	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	79452541	159780275	31374001	22	2260											
FRG1	2483	mdanderson.org	37	chr4	190883004	190883004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagagcttccaagaccaCaaacttaaaataagtaaaga	5	8	1	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	190883004	C	A	190883004	3	1	31	1	0	0	0	0	1	0	0	0	6098	477	17	5	687	5	FRG1	4	190883004	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	31102729	190883004	271272	23	2261											
PRDM9	56979	broad.mit.edu;mdanderson.org	37	chr5	23527628	23527628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtctgcagggagtgtgggCggggctttagcaataagtca	16	6	2	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	23527628	C	T	23527628	3	4	31	1	0	0	0	0	1	0	0	0	12552	759	27	1	2469	1	PRDM9	5	23527628	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		23527628	157387632	24	2262											
PCDHA8	56140	broad.mit.edu	37	chr5	140223107	140223107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgagggcgggtgccgggCgggcaagcccactctggtgt	18	12	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	140223107	C	T	140223107	3	4	31	1	0	0	0	0	1	0	0	0	11609	768	27	1	2203	1	PCDHA8	5	140223107	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	116695479	140223107	40692153	25	2263											
SLC25A2	83884	broad.mit.edu	37	chr5	140683388	140683388	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcccccctgcggccccCgctgtgaggtcgatggcggc	15	17	0	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	140683388	C	T	140683388	2	4	31	1	0	0	0	0	0	0	0	1	14580	639	23	1		1	SLC25A2	5	140683388	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	460281	140683388	40231872	26	2264											
PCDH12	51294	broad.mit.edu;mdanderson.org	37	chr5	141335867	141335867	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgacctctgagcagtgAcctctcctgtgttggagtca	11	11	4	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	141335867	A	G	141335867	3	3	31	1	0	0	0	0	1	0	0	0	11589	275	10	2	2020	2	PCDH12	5	141335867	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	652479	141335867	39579393	27	2265											
GRIA1	2890	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	153065877	153065877	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgattgaaatgaaacatgaCggcatccgaaaggtaaggtc	12	6	0	4	rs140876127		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	153065877	C	T	153065877	2	4	31	1	0	0	0	0	0	0	0	1	6825	535	19	1		1	GRIA1	5	153065877	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	11730010	153065877	27849383	28	2266											
FLT4	2324	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	180053237	180053237	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcatgtggactgtggcGcccggacagtgcctttccat	14	12	0	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	180053237	G	A	180053237	3	1	31	1	0	0	0	0	1	0	0	0	5993	1087	38	1	3055	1	FLT4	5	180053237	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	26987360	180053237	862023	29	2267											
HIVEP1	3096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	12162043	12162043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgctgcgagagatgaaaacGacacaattccgtctgtagac	11	9	1	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	12162043	G	A	12162043	3	1	31	1	0	0	0	0	1	0	0	0	7244	1058	37	1	6885	1	HIVEP1	6	12162043	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10		12162043	158953024	30	2268											
MUC21	394263	mdanderson.org	37	chr6	30955158	30955158	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacgacctccagtggggcCagcacagccaccaactctga	10	16	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	30955158	C	T	30955158	2	4	31	1	0	0	0	0	0	0	0	1	10055	581	21	4		4	MUC21	6	30955158	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	18793115	30955158	140159909	31	2269											
SYNGAP1	8831	ucsc.edu	37	chr6	33400504	33400504	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagctccatcaaacgaAcgaagtcacaacccaaactt	4	12	2	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	33400504	A	G	33400504	3	3	31	1	0	0	0	0	1	0	0	0	15548	43	2	2	448	2	SYNGAP1	6	33400504	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	2445346	33400504	137714563	32	2270											
GRM1	2911	broad.mit.edu;ucsc.edu	37	chr6	146720023	146720023	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccctaatctttgtactGtaccgggacacaccagtggt	9	12	2	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	146720023	G	T	146720023	2	4	31	1	0	0	0	0	0	0	0	1	6854	1364	48	5		5	GRM1	6	146720023	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	113319519	146720023	24395044	33	2271											
PLG	5340	bcgsc.ca	37	chr6	161143514	161143514	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctaccgaggcacatcctccAccaccaccacaggaaagaag	8	16	0	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	161143514	A	T	161143514	3	4	31	1	0	0	0	0	1	0	0	0	12166	159	6	5	1213	5	PLG	6	161143514	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	14423491	161143514	9971553	34	2272											
SFT2D1	113402	broad.mit.edu	37	chr6	166736357	166736357	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcttaccttgcatatgggAtgtacgacaggctatacctg	10	9	0	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	166736357	A	G	166736357	3	3	31	1	0	0	0	0	1	0	0	0	14282	333	12	4	59	4	SFT2D1	6	166736357	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	5592843	166736357	4378710	35	2273											
MUC17	140453	mdanderson.org	37	chr7	100680472	100680472	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaactcctagggaaggaagGcctccattaacaagtatacc	8	11	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	100680472	G	C	100680472	3	2	31	1	0	0	0	0	1	0	0	0	10052	1194	42	5	5785	5	MUC17	7	100680472	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10		100680472	58458191	36	2274											
PMPCB	9512	broad.mit.edu	37	chr7	102944340	102944340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacattgggagaagcagAgattgaacgtgagcgtggag	16	6	0	4	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	102944340	A	G	102944340	3	3	31	1	0	0	0	0	1	0	0	0	12221	304	11	2	527	2	PMPCB	7	102944340	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	2263868	102944340	56194323	37	2275											
ABP1	26	broad.mit.edu;mdanderson.org	37	chr7	150555109	150555109	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcacttggtgcactaccgCgtagacctggatgtggcagg	13	11	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	150555109	C	T	150555109	2	4	31	1	0	0	0	0	0	0	0	1	98	755	27	1		1	ABP1	7	150555109	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	47610769	150555109	8583554	38	2276											
DEFA3	1668	mdanderson.org	37	chr8	6873603	6873603	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtattctgcaatagcagTccatgtttttccttgagcct	8	10	1	1	rs2230231	bycluster;byfrequency;byhapmap	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	6873603	T	G	6873603	3	3	31	1	0	0	0	0	1	0	0	0	4422	1667	58	5	94	5	DEFA3	8	6873603	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10		6873603	139490419	39	2277											
MFHAS1	9258	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	8748357	8748357	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atccctctggaagaagacatTgaggatgtcgatgaggcggg	15	7	1	4	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	8748357	T	A	8748357	3	1	31	1	0	0	0	0	1	0	0	0	9598	1812	63	5	958	5	MFHAS1	8	8748357	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	1874754	8748357	137615665	40	2278											
PABPC1	26986	broad.mit.edu	37	chr8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttacctttgcactagtgattGtaccaaatggagaaaactct	7	8	1	2	rs202060459		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	101724606	G	A	101724606	3	1	31	1	0	0	0	0	1	0	0	0	11442	1377	48	4	986	4	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	92976249	101724606	44639416	41	2279											
ADCY8	114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	131922101	131922101	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caacatcgtgttttgtccttGaccgcacatacctgttgaca	7	12	0	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	131922101	G	A	131922101	3	1	31	1	0	0	0	0	1	0	0	0	300	1294	45	4	2314	4	ADCY8	8	131922101	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	30197495	131922101	14441921	42	2280											
CNTNAP3	79937	mdanderson.org	37	chr9	39103743	39103743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagagtggcgagcttaccaCgcagctcaatcctgatgaaa	10	12	1	3	rs7852039	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	39103743	C	T	39103743	3	4	31	1	0	0	0	0	1	0	0	0	3677	536	19	1	1368	1	CNTNAP3	9	39103743	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		39103743	102109688	43	2281											
PCSK5	5125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	78749078	78749078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tattgtcaggacttcccgtgCgggacatttgaacgctaatg	11	9	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	78749078	C	T	78749078	3	4	31	1	0	0	0	0	1	0	0	0	11682	768	27	1	1300	1	PCSK5	9	78749078	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	39645335	78749078	62464353	44	2282											
ODF2	4957	broad.mit.edu	37	chr9	131245156	131245156	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagctccttcaggaaatacAatgtgagaaggtagtgtgct	12	6	1	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	131245156	A	G	131245156	3	3	31	1	0	0	0	0	1	0	0	0	10906	130	5	4	1066	4	ODF2	9	131245156	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	52496078	131245156	9968275	45	2283											
NUP188	23511	broad.mit.edu	37	chr9	131750367	131750367	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagggccagctgctgatcaAgacagtgaaactggcattct	12	10	2	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	131750367	A	G	131750367	3	3	31	1	0	0	0	0	1	0	0	0	10837	72	3	2	2529	2	NUP188	9	131750367	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	505211	131750367	9463064	46	2284											
PPAPDC3	84814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	134165625	134165625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccctccttcaagggcatcGccttcaactccctgctggcc	7	19	2	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	134165625	G	A	134165625	3	1	31	1	0	0	0	0	1	0	0	0	12376	1087	38	1	243	1	PPAPDC3	9	134165625	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	2415258	134165625	7047806	47	2285											
ZMYND11	10771	bcgsc.ca	37	chr10	283550	283550	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agatcttaataaaaaggggaAggacaataaacacccgatgt	9	6	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	283550	A	G	283550	3	3	31	1	0	0	0	0	1	0	0	0	17811	72	3	2	560	2	ZMYND11	10	283550	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10		283550	135251197	48	2286											
CUL2	8453	ucsc.edu;bcgsc.ca	37	chr10	35333504	35333504	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttcttaccttttccataTactgtgagcagtttgattct	5	8	2	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	35333504	T	C	35333504	3	2	31	1	0	0	0	0	1	0	0	0	4086	1406	49	4	1589	4	CUL2	10	35333504	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	35049954	35333504	100201243	49	2287											
ANK3	288	broad.mit.edu	37	chr10	61832802	61832802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgccatttttagggcgtgCctttttctctggggactgca	11	9	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	61832802	C	T	61832802	3	4	31	1	0	0	0	0	1	0	0	0	622	739	26	3	5637	3	ANK3	10	61832802	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	26499298	61832802	73701945	50	2288											
NRAP	4892	hgsc.bcm.edu;mdanderson.org	37	chr10	115381805	115381805	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cattgggatttggtgtcctcGaatcccttcttgtactccag	9	11	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	115381805	G	A	115381805	2	1	31	1	0	0	0	0	0	0	0	1	10717	1049	37	1		1	NRAP	10	115381805	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	53549003	115381805	20152942	51	2289											
TCERG1L	256536	broad.mit.edu	37	chr10	132932683	132932683	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttggtcttccctgttgtcTtcagaactggacccatcgct	8	13	4	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	132932683	T	C	132932683	2	2	31	1	0	0	0	0	0	0	0	1	15790	1606	56	2		2	TCERG1L	10	132932683	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10	17550878	132932683	2602064	52	2290											
FRG2B	441581	mdanderson.org	37	chr10	135439015	135439015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacgtcccctatggtgggcaTcacaggtctcctggatttca	10	12	3	0	rs75470891		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	135439015	T	C	135439015	3	2	31	1	0	0	0	0	1	0	0	0	6099	1435	50	4	414	4	FRG2B	10	135439015	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	2506332	135439015	95732	53	2291											
SIRT3	23410	broad.mit.edu	37	chr11	224195	224195	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtcgggcttcacaacgccGgtgcagaccgggcagcgggg	17	12	1	1	rs202035351		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	224195	G	A	224195	2	1	31	1	0	0	0	0	0	0	0	1	14437	1103	39	1		1	SIRT3	11	224195	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10		224195	134782321	54	2292											
MUC2	4583	mdanderson.org	37	chr11	1093452	1093452	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accacggtgaccccaaccccGacacccaccggcacacagac	7	21	0	2	rs34136803		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	1093452	G	A	1093452	2	1	31	1	0	0	0	0	0	0	0	1	10053	1045	37	1		1	MUC2	11	1093452	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	869257	1093452	133913064	55	2293											
DNHD1	144132	bcgsc.ca	37	chr11	6591281	6591281	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcagacccaagaccaGctgtgggcaagtcttagcaa	10	11	3	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	6591281	G	T	6591281	3	4	31	1	0	0	0	0	1	0	0	0	4705	962	34	5	13065	5	DNHD1	11	6591281	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	5497829	6591281	128415235	56	2294											
MICALCL	84953	mdanderson.org	37	chr11	12316389	12316389	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctcctcctcctcctAcagcgggaggtgcaggtaag	10	16	0	0	rs3812754		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	12316389	A	C	12316389	3	2	31	1	0	0	0	0	1	0	0	0	9649	391	14	5	1417	5	MICALCL	11	12316389	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	5725108	12316389	122690127	57	2295											
SLC43A1	8501	broad.mit.edu	37	chr11	57268329	57268329	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatatcaacggagacagagCtggaaaggggaaagcagcag	15	6	1	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	57268329	C	T	57268329	5	4	31	1	0	0	0	0	0	0	1	0	14730	811	28	4	1335	4	SLC43A1	11	57268329	Splice_Site	SNP	C	TCGA-KM-8476-01A-11D-2310-10	44951940	57268329	77738187	58	2296											
ARHGEF17	9828	hgsc.bcm.edu	37	chr11	73073258	73073258	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctctgcatcggggcggtGcccgggctgcagcctcgctg	15	15	1	0	rs148923147	by1000genomes	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	73073258	G	T	73073258	2	4	31	1	0	0	0	0	0	0	0	1	902	1306	46	5		5	ARHGEF17	11	73073258	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	15804929	73073258	61933258	59	2297											
INTS4	92105	mdanderson.org	37	chr11	77614592	77614592	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgaataagcttacctgtttCgctgctgctgaggccaaatc	9	11	0	2	rs140666680		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	77614592	C	T	77614592	2	4	31	1	0	0	0	0	0	0	0	1	7841	871	31	1		1	INTS4	11	77614592	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	4541334	77614592	57391924	60	2298											
TRIM49	57093	mdanderson.org	37	chr11	89531533	89531533	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaagaagaaagagtcccGcctttccatctatcttctca	5	14	3	3	rs570297	bycluster	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	89531533	G	T	89531533	3	4	31	1	0	0	0	0	1	0	0	0	16629	1087	38	5	238	5	TRIM49	11	89531533	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	11916941	89531533	45474983	61	2299											
PGR	5241	ucsc.edu	37	chr11	100999187	100999187	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcactggggccccggaCcagtgagggctctcagaggc	16	13	2	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	100999187	C	T	100999187	4	4	31	1	0	0	0	0	0	1	0	0	11885	508	18	3	2218	3	PGR	11	100999187	Nonsense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	11467654	100999187	34007329	62	2300											
CASP4	837	broad.mit.edu	37	chr11	104825546	104825546	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcctgccatacgttgctTctcttgcatagagtctgcca	8	12	2	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	104825546	T	C	104825546	3	2	31	1	0	0	0	0	1	0	0	0	2698	1792	62	4	971	4	CASP4	11	104825546	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	3826359	104825546	30180970	63	2301											
HSPA8	3312	mdanderson.org	37	chr11	122931403	122931403	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctcccttgtattctacttgGaccttgggcctgccagcatc	8	14	2	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	122931403	G	A	122931403	2	1	31	1	0	0	0	0	0	0	0	1	7476	1161	41	3		3	HSPA8	11	122931403	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	18105857	122931403	12075113	64	2302											
GALNT8	26290	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	4854614	4854614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcagagccaatcttggctCggattcaggaggaccgcact	14	11	2	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	4854614	C	T	4854614	3	4	31	1	0	0	0	0	1	0	0	0	6273	875	31	1	898	1	GALNT8	12	4854614	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		4854614	128997281	65	2303											
PRB2	653247	mdanderson.org	37	chr12	11546262	11546262	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggaccttggggctggttGcctccttgtgggggtggtcc	20	9	0	0	rs199808121	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	11546262	G	A	11546262	2	1	31	1	0	0	0	0	0	0	0	1	12532	1306	46	4		4	PRB2	12	11546262	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	6691648	11546262	122305633	66	2304											
EIF4B	1975	broad.mit.edu	37	chr12	53416356	53416356	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactggagggctcgtcctgcTacagacagctttgatgacta	12	10	0	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	53416356	T	C	53416356	2	2	31	1	0	0	0	0	0	0	0	1	5066	1509	53	2		2	EIF4B	12	53416356	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10	41870094	53416356	80435539	67	2305											
OR6C74	254783	mdanderson.org	37	chr12	55641157	55641157	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgattatttttcttctccTttttttcacctacatgttga	5	8	3	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	55641157	T	C	55641157	3	2	31	1	0	0	0	0	1	0	0	0	11277	1609	56	2	88	2	OR6C74	12	55641157	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	2224801	55641157	78210738	68	2306											
ACACB	32	broad.mit.edu	37	chr12	109577282	109577282	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctggttaaaaatctggggGaaaatgacggactccaagcc	11	9	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	109577282	G	A	109577282	2	1	31	1	0	0	0	0	0	0	0	1	107	1161	41	3		3	ACACB	12	109577282	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	53936125	109577282	24274613	69	2307											
TMEM132B	114795	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	126137027	126137027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccatcctggctgagaagaCggtgattgtcctggatgacc	12	11	0	4	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	126137027	C	T	126137027	3	4	31	1	0	0	0	0	1	0	0	0	16150	536	19	1	1970	1	TMEM132B	12	126137027	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	16559745	126137027	7714868	70	2308											
HEATR5A	25938	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	31844040	31844040	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accacacagtgcaccagctcGtccttccagggtcacctgcc	8	18	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	31844040	G	A	31844040	4	1	31	1	0	0	0	0	0	1	0	0	7089	1153	40	1	4397	1	HEATR5A	14	31844040	Nonsense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10		31844040	75505500	71	2309											
AHNAK2	113146	mdanderson.org	37	chr14	105416223	105416223	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaggggaggctcacttcGgcctccaccttcggcgcaga	14	13	1	1	rs141406015		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	105416223	G	A	105416223	2	1	31	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105416223	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	73572183	105416223	1933317	72	2310											
MYO5A	4644	broad.mit.edu;mdanderson.org	37	chr15	52613683	52613683	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtgttcattctggcgAgatgtgttgtgcttcataaa	12	6	3	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	52613683	A	G	52613683	2	3	31	1	0	0	0	0	0	0	0	1	10156	291	11	2		2	MYO5A	15	52613683	Silent	SNP	A	TCGA-KM-8476-01A-11D-2310-10		52613683	49917709	73	2311											
SLC24A1	9187	broad.mit.edu;mdanderson.org	37	chr15	65946296	65946296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgatctcttcaattgCgtcatgtaaatggagaatga	10	5	3	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	65946296	C	T	65946296	3	4	31	1	0	0	0	0	1	0	0	0	14563	768	27	1	1319	1	SLC24A1	15	65946296	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	13332613	65946296	36585096	74	2312											
SH3GL3	6457	broad.mit.edu	37	chr15	84286962	84286962	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaaatagatgaaaactggTatgaaggaatgatacacgga	10	4	1	4	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	84286962	T	C	84286962	3	2	31	1	0	0	0	0	1	0	0	0	14350	1638	57	2	1001	2	SH3GL3	15	84286962	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	18340666	84286962	18244430	75	2313											
SOX8	30812	mdanderson.org	37	chr16	1034954	1034954	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgagccgggccaggcctaTgggggcgcctacttccacgc	14	17	0	0	rs11542178		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	1034954	T	C	1034954	2	2	31	1	0	0	0	0	0	0	0	1	15055	1471	51	4		4	SOX8	16	1034954	Silent	SNP	T	TCGA-KM-8476-01A-11D-2310-10		1034954	89319799	76	2314											
XYLT1	64131	hgsc.bcm.edu	37	chr16	17202636	17202636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggccgtctggctgcaGgtctgcatgaccgggcaggc	15	14	2	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	17202636	G	A	17202636	2	1	31	1	0	0	0	0	0	0	0	1	17569	987	35	4		4	XYLT1	16	17202636	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	16167682	17202636	73152117	77	2315											
IL4R	3566	broad.mit.edu	37	chr16	27374339	27374339	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggagcagatcctccgcCgaaatgtcctccagcatggg	12	14	0	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	27374339	C	T	27374339	4	4	31	1	0	0	0	0	0	1	0	0	7759	644	23	1	1718	1	IL4R	16	27374339	Nonsense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	10171703	27374339	62980414	78	2316											
MAPK3	5595	broad.mit.edu	37	chr16	30128535	30128535	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggtcttggagggcagagActgtaggtagtttcgggcct	16	7	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	30128535	A	G	30128535	3	3	31	1	0	0	0	0	1	0	0	0	9356	275	10	2	361	2	MAPK3	16	30128535	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	2754196	30128535	60226218	79	2317											
ST3GAL2	6483	broad.mit.edu	37	chr16	70432188	70432188	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtggctgtcaaaccagtcGgaggcaccggcatcgcccat	12	13	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	70432188	G	A	70432188	2	1	31	1	0	0	0	0	0	0	0	1	15315	1103	39	1		1	ST3GAL2	16	70432188	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10	40303653	70432188	19922565	80	2318											
SDR42E1	93517	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	82032717	82032717	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttatttctggcccctccttCacagtgacagaatcacagaa	6	13	3	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	82032717	C	A	82032717	3	1	31	1	0	0	0	0	1	0	0	0	14070	837	29	5	4	5	SDR42E1	16	82032717	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	11600529	82032717	8322036	81	2319											
USP10	9100	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	84793019	84793019	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atgtaccacctgatgaagttCattcctctgtattccaaagt	6	10	2	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	84793019	C	A	84793019	3	1	31	1	0	0	0	0	1	0	0	0	17147	825	29	5	1357	5	USP10	16	84793019	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	2760302	84793019	5561734	82	2320											
C17orf97	400566	bcgsc.ca	37	chr17	263643	263643	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggccctcaagggcttccacCccgaccccgaggccctcaag	10	19	2	0	rs199668575	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	263643	C	A	263643	3	1	31	1	0	0	0	0	1	0	0	0	1909	623	22	5		5	C17orf97	17	263643	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		263643	80931567	83	2321											
MYH1	4619	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	10395792	10395792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaccctcagcttgttgaCctgggactcagcaatgtcag	9	13	4	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	10395792	C	T	10395792	3	4	31	1	0	0	0	0	1	0	0	0	10107	507	18	3	62	3	MYH1	17	10395792	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	10132149	10395792	70799418	84	2322											
TRIM16	10626	broad.mit.edu	37	chr17	15534987	15534987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttggaagtccaatatttgcGctgaacaacggcagacactt	9	9	0	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	15534987	G	A	15534987	3	1	31	1	0	0	0	0	1	0	0	0	16596	1087	38	1	645	1	TRIM16	17	15534987	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	5139195	15534987	65660223	85	2323											
ULK2	9706	ucsc.edu	37	chr17	19705212	19705212	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagcccatggggctggtgTtggaccttcgtaccactgca	14	11	0	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	19705212	T	C	19705212	3	2	31	1	0	0	0	0	1	0	0	0	17082	1725	60	2	1839	2	ULK2	17	19705212	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	4170225	19705212	61489998	86	2324											
LRRC37A	9884	ucsc.edu	37	chr17	44408776	44408776	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctggaagtatctgctcTttcagaacattttatagaga	7	6	4	2	rs273532	bycluster	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	44408776	T	C	44408776	3	2	31	1	0	0	0	0	1	0	0	0	9063	1609	56	2	4167	2	LRRC37A	17	44408776	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10	24703564	44408776	36786434	87	2325											
DLX3	1747	ucsc.edu	37	chr17	48072253	48072253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtagcccaggtcagtgAcagaagactcgggcagggta	15	8	1	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	48072253	A	G	48072253	3	3	31	1	0	0	0	0	1	0	0	0	4609	275	10	2	765	2	DLX3	17	48072253	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	3663477	48072253	33122957	88	2326											
RNF43	54894	ucsc.edu	37	chr17	56439960	56439960	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaccgaagccaggatgatcAcaaagatggtgcccaccact	10	13	1	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	56439960	A	G	56439960	3	3	31	1	0	0	0	0	1	0	0	0	13590	159	6	2	1739	2	RNF43	17	56439960	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	8367707	56439960	24755250	89	2327											
LRRC37A3	374819	bcgsc.ca	37	chr17	62892919	62892919	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gctccaacgctgagctggatCtttcttcagcttcttgggcg	11	12	4	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	62892919	C	A	62892919	3	1	31	1	0	0	0	0	1	0	0	0	9065	913	32	5	4495	5	LRRC37A3	17	62892919	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	6452959	62892919	18302291	90	2328											
ESCO1	114799	hgsc.bcm.edu;ucsc.edu	37	chr18	19116141	19116141	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaccatctctctaatctcGtcaacctgccaaataaagaa	3	13	5	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	19116141	G	A	19116141	2	1	31	1	0	0	0	0	0	0	0	1	5287	1136	40	1		1	ESCO1	18	19116141	Silent	SNP	G	TCGA-KM-8476-01A-11D-2310-10		19116141	58961107	91	2329											
FAM69C	125704	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	72114400	72114400	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggccggccgcgccagtcgGcctgcagcaccttcttgcct	13	18	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	72114400	G	T	72114400	3	4	31	1	0	0	0	0	1	0	0	0	5653	1203	42	5	954	5	FAM69C	18	72114400	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	52998259	72114400	5962848	92	2330											
ATP9B	374868	broad.mit.edu	37	chr18	77090010	77090010	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttatttttgttctttgatAggatgaatccacggcagaaa	9	5	1	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	77090010	A	G	77090010	5	3	31	1	0	0	0	0	0	0	1	0	1203	434	15	2	2000	2	ATP9B	18	77090010	Splice_Site	SNP	A	TCGA-KM-8476-01A-11D-2310-10	4975610	77090010	987238	93	2331											
ICAM1	3383	mdanderson.org;bcgsc.ca	37	chr19	10395799	10395799	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctccccacagccccccggTatgagattgtcatcatcact	6	17	3	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		C	10395799	T	C	10395799	3	2	31	1	0	0	0	0	1	0	0	0	7540	1638	57	2	1461	2	ICAM1	19	10395799	Missense_Mutation	SNP	T	TCGA-KM-8476-01A-11D-2310-10		10395799	48733184	94	2332											
QTRT1	81890	broad.mit.edu	37	chr19	10823283	10823283	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtgacatgttcgactgCgtcttccccacacggacagc	11	13	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	10823283	C	T	10823283	2	4	31	1	0	0	0	0	0	0	0	1	12977	776	27	1		1	QTRT1	19	10823283	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	427484	10823283	48305700	95	2333											
ZNF701	55762	broad.mit.edu;mdanderson.org	37	chr19	53086657	53086657	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgtggcaaggtttttaatCgaaaatcaaaccttgaacgt	8	6	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	53086657	C	T	53086657	4	4	31	1	0	0	0	0	0	1	0	0	18210	876	31	1	1557	1	ZNF701	19	53086657	Nonsense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	42263374	53086657	6042326	96	2334											
LILRA3	11026	broad.mit.edu	37	chr19	54803112	54803112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacgaccacctgcgacttgGgctcacggggcccacggaga	14	14	1	1	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	54803112	G	A	54803112	3	1	31	1	0	0	0	0	1	0	0	0	8849	1232	43	3	770	3	LILRA3	19	54803112	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	1716455	54803112	4325871	97	2335											
MYH7B	57644	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	33575696	33575696	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcatcggggttctggacatCgctgggtttgagatctttga	13	7	3	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	33575696	C	T	33575696	2	4	31	1	0	0	0	0	0	0	0	1	10118	874	31	1		1	MYH7B	20	33575696	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10		33575696	29449824	98	2336											
B3GALT5	10317	ucsc.edu	37	chr21	41033240	41033240	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggggctctgcctcgaaAggctgaacatcagattggag	14	8	2	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	41033240	A	G	41033240	3	3	31	1	0	0	0	0	1	0	0	0	1254	63	3	2	756	2	B3GALT5	21	41033240	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10		41033240	7096655	99	2337											
HIC2	23119	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	21800335	21800335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggctagtggggctggccCtagcgggccctatggggagc	18	12	0	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	21800335	C	G	21800335	3	3	31	1	0	0	0	0	1	0	0	0	7160	681	24	5	1157	5	HIC2	22	21800335	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		21800335	29504231	100	2338											
ZNF280B	140883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	22842485	22842485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttctacatcagcaaagacCgacgatctataatggcaaac	7	10	3	1	rs141102079		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	22842485	C	T	22842485	2	4	31	1	0	0	0	0	0	0	0	1	17920	639	23	1		1	ZNF280B	22	22842485	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	1042150	22842485	28462081	101	2339											
HPS4	89781	broad.mit.edu	37	chr22	26860415	26860415	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagccctgccatctggaAcaggcacatgtaggaaggca	13	10	1	0	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		G	26860415	A	G	26860415	3	3	31	1	0	0	0	0	1	0	0	0	7399	43	2	2	961	2	HPS4	22	26860415	Missense_Mutation	SNP	A	TCGA-KM-8476-01A-11D-2310-10	4017930	26860415	24444151	102	2340											
MGAT3	4248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	39884300	39884300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgacgtcttcatcattgaCgatgcggacgagatcccggc	12	12	3	2	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	39884300	C	T	39884300	2	4	31	1	0	0	0	0	0	0	0	1	9621	535	19	1		1	MGAT3	22	39884300	Silent	SNP	C	TCGA-KM-8476-01A-11D-2310-10	13023885	39884300	11420266	103	2341											
RBM3	5935	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	48434802	48434802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcgtggtcgcagctactCtagaggtgagtgcagtgatc	16	8	1	3	novel		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		T	48434802	C	T	48434802	3	4	31	1	0	0	0	0	1	0	0	0	13221	913	32	4	321	4	RBM3	23	48434802	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10		48434802	106835758	104	2342											
ZCCHC5	203430	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	77913571	77913571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcccgggttgctggaggcGccagggactctggggctgct	17	12	1	0	rs144237768		TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	77913571	G	A	77913571	3	1	31	1	0	0	0	0	1	0	0	0	17696	1087	38	1	1084	1	ZCCHC5	23	77913571	Missense_Mutation	SNP	G	TCGA-KM-8476-01A-11D-2310-10	29478769	77913571	77356989	105	2343											
MAGEC1	9947	mdanderson.org	37	chrX	140994352	140994352	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tctcctccactttactgagtCttttccagagttcccctgag	6	14	2	3	rs113701062	byfrequency	TCGA-KM-8476-01A-11D-2310-10	TCGA-KM-8476-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bebc389-de0d-45b8-9d2f-6476988c358a	69f24cd1-4ec4-4ef0-876f-4eda31a72245		A	140994352	C	A	140994352	3	1	31	1	0	0	0	0	1	0	0	0	9257	913	32	5	1168	5	MAGEC1	23	140994352	Missense_Mutation	SNP	C	TCGA-KM-8476-01A-11D-2310-10	63080781	140994352	14276208	106	2344											
HNRNPCL1	343069	bcgsc.ca	37	chr1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actccagctggtcatcccccTgatcttcattaacatcatca	4	15	5	1	rs74587302		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	12907358	T	C	12907358	3	2	32	1	0	0	0	0	1	0	0	0	7321	1580	55	2	98	2	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10		12907358	236343263	1	2345											
RBMXL1	494115	mdanderson.org	37	chr1	89449135	89449135	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcatccatgtgtcctccTcgtgaaggaggtcccctggt	10	14	1	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	89449135	T	C	89449135	2	2	32	1	0	0	0	0	0	0	0	1	13245	1538	54	2		2	RBMXL1	1	89449135	Silent	SNP	T	TCGA-KM-8477-01A-11D-2310-10	76541777	89449135	159801486	2	2346											
CHIA	27159	broad.mit.edu;bcgsc.ca	37	chr1	111857960	111857960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtcatcaaattcctgcGccagtatgagtttgacgggc	10	11	3	2	rs41445048	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	111857960	G	A	111857960	3	1	32	1	0	0	0	0	1	0	0	0	3371	1087	38	1	401	1	CHIA	1	111857960	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	22408825	111857960	137392661	3	2347											
NOTCH2	4853	broad.mit.edu	37	chr1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccagtctgccgacaggTgcctccattgacacaaggtg	11	13	2	1	rs200464440		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	120539668	T	A	120539668	3	1	32	1	0	0	0	0	1	0	0	0	10627	1696	59	5	6836	5	NOTCH2	1	120539668	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10	8681708	120539668	128710953	4	2348											
POLR3C	10623	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	145594109	145594109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatcatctcctctatttcttGtaactgtgcttcctctgcac	5	13	5	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	145594109	G	T	145594109	3	4	32	1	0	0	0	0	1	0	0	0	12310	1386	48	5	159	5	POLR3C	1	145594109	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	25054441	145594109	103656512	5	2349											
FLG	2312	mdanderson.org	37	chr1	152280597	152280597	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacccagaccgcctctcagaAtcttctgagtgtccctcact	7	16	4	3	rs3126077	bycluster;byfrequency;by2hit2allele	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	152280597	A	G	152280597	2	3	32	1	0	0	0	0	0	0	0	1	5971	98	4	4		4	FLG	1	152280597	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10	6686488	152280597	96970024	6	2350											
BIRC6	57448	ucsc.edu	37	chr2	32617105	32617105	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cataaagtatgtttacttttAgatcactgatgtatagtgaa	7	4	1	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	32617105	A	G	32617105	5	3	32	1	0	0	0	0	0	0	1	0	1443	434	15	2	856	2	BIRC6	2	32617105	Splice_Site	SNP	A	TCGA-KM-8477-01A-11D-2310-10		32617105	210582268	7	2351											
DNAH6	1768	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	84928427	84928427	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttatcaatctttacctGtctatgctgtctgaaaaaag	7	8	4	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	84928427	G	T	84928427	2	4	32	1	0	0	0	0	0	0	0	1	4642	1364	48	5		5	DNAH6	2	84928427	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	52311322	84928427	158270946	8	2352											
LCT	3938	broad.mit.edu	37	chr2	136555689	136555689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcttgaaaataggatgtGcaaaccagcctcccatgaac	7	11	1	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	136555689	G	A	136555689	3	1	32	1	0	0	0	0	1	0	0	0	8755	1319	46	4	917	4	LCT	2	136555689	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	51627262	136555689	106643684	9	2353											
FZD7	8324	broad.mit.edu	37	chr2	202901005	202901005	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgtcggcatcaccactggCttctggatctggtcgggcaa	12	12	3	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	202901005	C	T	202901005	2	4	32	1	0	0	0	0	0	0	0	1	6187	784	28	4		4	FZD7	2	202901005	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	66345316	202901005	40298368	10	2354											
PAK2	5062	mdanderson.org	37	chr3	196529982	196529982	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtgctggatgtcctaaAgttctacgactccaacacag	10	11	1	0	rs78043821	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	196529982	A	G	196529982	3	3	32	1	0	0	0	0	1	0	0	0	11480	72	3	2	393	2	PAK2	3	196529982	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		196529982	1492448	11	2355											
WDFY3	23001	broad.mit.edu	37	chr4	85630103	85630103	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatccaggggaagacaggatActgcatgagatcattatatg	12	6	1	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	85630103	A	G	85630103	3	3	32	1	0	0	0	0	1	0	0	0	17376	391	14	2	2468	2	WDFY3	4	85630103	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		85630103	105524173	12	2356											
CEP72	55722	hgsc.bcm.edu	37	chr5	612536	612536	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggttcgggcgaagagcggCttagggcctcaccgcgacct	16	13	1	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	612536	C	T	612536	2	4	32	1	0	0	0	0	0	0	0	1	3289	784	28	4		4	CEP72	5	612536	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10		612536	180302724	13	2357											
RXFP3	51289	broad.mit.edu	37	chr5	33937368	33937368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgtgttcttcctcactGccatgagtgtgacgcgctac	10	14	2	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	33937368	G	A	33937368	3	1	32	1	0	0	0	0	1	0	0	0	13856	1319	46	4	525	4	RXFP3	5	33937368	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	33324832	33937368	146977892	14	2358											
LRRTM2	26045	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	138209476	138209476	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcatttccagtcaggtcTagcttttctaaagtgcccca	6	11	4	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	138209476	T	G	138209476	2	3	32	1	0	0	0	0	0	0	0	1	9112	1509	53	5		5	LRRTM2	5	138209476	Silent	SNP	T	TCGA-KM-8477-01A-11D-2310-10	104272108	138209476	42705784	15	2359											
GTF2H4	2968	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	30879492	30879492	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggtatgagtgattctcTgttgaacttcctgcaacatc	10	8	1	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	30879492	T	A	30879492	3	1	32	1	0	0	0	0	1	0	0	0	6923	1580	55	5	803	5	GTF2H4	6	30879492	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10		30879492	140235575	16	2360											
DDX56	54606	broad.mit.edu	37	chr7	44611269	44611269	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtcttcctcagtctcacAgaccacctgaaactgctgta	6	13	3	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	44611269	A	G	44611269	3	3	32	1	0	0	0	0	1	0	0	0	4406	188	7	2	967	2	DDX56	7	44611269	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		44611269	114527394	17	2361											
ASB4	51666	broad.mit.edu	37	chr7	95166910	95166910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatttttaccactctctcTttactgtgtgctgtaactct	7	10	3	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	95166910	T	C	95166910	3	2	32	1	0	0	0	0	1	0	0	0	1029	1609	56	2	1210	2	ASB4	7	95166910	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10	50555641	95166910	63971753	18	2362											
AHCYL2	23382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	129037098	129037098	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtgctctgggggcccaGtgccgatgggctgcctgcaa	17	12	1	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	129037098	G	T	129037098	3	4	32	1	0	0	0	0	1	0	0	0	411	1020	36	5	896	5	AHCYL2	7	129037098	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	33870188	129037098	30101565	19	2363											
EBF2	64641	broad.mit.edu	37	chr8	25744302	25744302	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaccttcctggggctcctttGcagaactgtttagatttata	8	9	0	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	25744302	G	T	25744302	4	4	32	1	0	0	0	0	0	1	0	0	4918	1311	46	5	777	5	EBF2	8	25744302	Nonsense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		25744302	120619720	20	2364											
RDH10	157506	broad.mit.edu	37	chr8	74235228	74235228	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacccctttattgctcaaaGaaagcaagccacaaacaata	5	11	1	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	74235228	G	A	74235228	3	1	32	1	0	0	0	0	1	0	0	0	13281	942	33	4	1005	4	RDH10	8	74235228	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	48490926	74235228	72128794	21	2365											
NCALD	83988	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr8	102705065	102705065	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatcttttctgttcttttCtctggggttgactcatcttc	7	9	6	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	102705065	C	T	102705065	2	4	32	1	0	0	0	0	0	0	0	1	10280	912	32	4		4	NCALD	8	102705065	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	28469837	102705065	43658957	22	2366											
DPYS	1807	mdanderson.org	37	chr8	105478933	105478933	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaccgcgagcccatgaagggGaactgcatgtgcgtgtgtgt	16	9	0	1	rs2298840	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	105478933	G	A	105478933	2	1	32	1	0	0	0	0	0	0	0	1	4783	1165	41	3		3	DPYS	8	105478933	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	2773868	105478933	40885089	23	2367											
PRUNE2	158471	hgsc.bcm.edu	37	chr9	79324154	79324154	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgactgttgcagtgactgAggaggaatgtcagtctcctc	13	8	2	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	79324154	A	T	79324154	2	4	32	1	0	0	0	0	0	0	0	1	12730	291	11	5		5	PRUNE2	9	79324154	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10		79324154	61889277	24	2368											
TLE4	7091	hgsc.bcm.edu	37	chr9	82191095	82191095	+	Splice_Site	DEL	A	A	-													atagaaatgcacaagcaggtAagttatttctttataaccat					novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		-	82191095	A	-	82191095	8	5	32	1	0	1	0	1	0	0	1	0	16045	377	13	0		0	TLE4	9	82191095	Splice_Site	DEL	A	TCGA-KM-8477-01A-11D-2310-10	2866941	82191095	59022336	25	2369											
PTPN3	5774	broad.mit.edu	37	chr9	112219611	112219612	+	Frame_Shift_Del	DEL	AT	AT	-													tcatcatgctgtaaaccaaaAtattccttttcagtcacacc					novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		-	112219612	AT	-	112219611	7	5	32	1	0	1	0	1	0	0	0	0	12881	108	4	0	2630	0	PTPN3	9	112219611	Frame_Shift_Del	DEL	AT	TCGA-KM-8477-01A-11D-2310-10	30028516	112219611	28993820	26	2370	62	2									
PTPN3	5774	bcgsc.ca	37	chr9	112219612	112219613	+	Frame_Shift_Del	DEL	AT	AT	-													catcatgctgtaaaccaaaaTattccttttcagtcacaccc					novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		-	112219613	AT	-	112219612	7	5	32	1	0	1	0	1	0	0	0	0	12881	1406	49	0	2631	0	PTPN3	9	112219612	Frame_Shift_Del	DEL	AT	TCGA-KM-8477-01A-11D-2310-10	1	112219612	28993819	27	2371	62	2									
C10orf71	118461	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	50533936	50533936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggaggacctgacccacGccctcgtgtgggagggcggc	19	12	0	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	50533936	G	A	50533936	3	1	32	1	0	0	0	0	1	0	0	0	1624	1087	38	1	3348	1	C10orf71	10	50533936	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		50533936	85000811	28	2372											
MYPN	84665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	69881358	69881358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggggccgctgaaggaggcGgaggccaagatgaccttcca	16	11	0	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	69881358	G	A	69881358	3	1	32	1	0	0	0	0	1	0	0	0	10176	1117	39	1	165	1	MYPN	10	69881358	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	19347422	69881358	65653389	29	2373											
TET1	80312	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	70426913	70426913	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatggtgtgggatggcAtccctcttccaatggccgac	11	12	3	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	70426913	A	G	70426913	3	3	32	1	0	0	0	0	1	0	0	0	15873	217	8	4	4595	4	TET1	10	70426913	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10	545555	70426913	65107834	30	2374											
SEC24C	9632	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	75519464	75519464	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagccctatggccctcccccGacaagtgcacaggtggctac	10	17	0	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	75519464	G	A	75519464	2	1	32	1	0	0	0	0	0	0	0	1	14093	1045	37	1		1	SEC24C	10	75519464	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	5092551	75519464	60015283	31	2375											
PTPRE	5791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	129866455	129866455	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaccagctggcccgacttCggagtgccttttacccccat	8	16	1	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	129866455	C	T	129866455	2	4	32	1	0	0	0	0	0	0	0	1	12892	883	31	1		1	PTPRE	10	129866455	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	54346991	129866455	5668292	32	2376											
SMPD1	6609	ucsc.edu	37	chr11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggatgggcctggtgctggCgctggcgctggcgctggcgc	20	11	0	0	rs78250081		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	6411941	C	T	6411941	3	4	32	1	0	0	0	0	1	0	0	0	14902	768	27	1	115	1	SMPD1	11	6411941	Missense_Mutation	SNP	C	TCGA-KM-8477-01A-11D-2310-10		6411941	128594575	33	2377											
OR5F1	338674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	55762021	55762021	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcacaagaaaaaacaaaaaGaggataatctgtagctccag	7	7	2	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	55762021	G	A	55762021	2	1	32	1	0	0	0	0	0	0	0	1	11237	929	33	4		4	OR5F1	11	55762021	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	49350080	55762021	79244495	34	2378											
FOLR2	2350	hgsc.bcm.edu;mdanderson.org	37	chr11	71932761	71932761	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcatgggactgggggtctCctgctcagtctggccctgat	13	12	4	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	71932761	C	T	71932761	2	4	32	1	0	0	0	0	0	0	0	1	6031	842	30	3		3	FOLR2	11	71932761	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10	16170740	71932761	63073755	35	2379											
SORL1	6653	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	121444978	121444978	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgtgacctggacacccaGtttcgttgccaggagtctgg	12	11	2	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	121444978	G	C	121444978	3	2	32	1	0	0	0	0	1	0	0	0	15032	1020	36	5	3460	5	SORL1	11	121444978	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	49512217	121444978	13561538	36	2380											
WNT5B	81029	broad.mit.edu;bcgsc.ca	37	chr12	1742019	1742019	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagttccggcagcggcggtgGaattgcagcacagcggacaa	15	11	0	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	1742019	G	A	1742019	4	1	32	1	0	0	0	0	0	1	0	0	17498	1183	41	3	282	3	WNT5B	12	1742019	Nonsense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		1742019	132109876	37	2381											
VAMP1	6843	broad.mit.edu	37	chr12	6574085	6574085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaccacgatgatggcacagAtggctcccagcatgatcatc	9	13	1	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	6574085	A	G	6574085	3	3	32	1	0	0	0	0	1	0	0	0	17218	333	12	4	82	4	VAMP1	12	6574085	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10	4832066	6574085	127277810	38	2382											
SOS2	6655	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	50619875	50619875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atgatgttcaacccaatgccGaaatacatttaagatcctga	6	9	1	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	50619875	G	A	50619875	3	1	32	1	0	0	0	0	1	0	0	0	15035	1057	37	1	1968	1	SOS2	14	50619875	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		50619875	56729665	39	2383											
HERC2	8924	mdanderson.org	37	chr15	28482158	28482158	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgctcattgccaaataCgaagcgtgtaatccgagaag	12	8	1	1	rs3881419	by1000genomes	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	28482158	C	G	28482158	2	3	32	1	0	0	0	0	0	0	0	1	7116	523	19	5		5	HERC2	15	28482158	Silent	SNP	C	TCGA-KM-8477-01A-11D-2310-10		28482158	74049234	40	2384											
UNC13C	440279	broad.mit.edu	37	chr15	54557616	54557616	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtgatccatatgttacagTtcaagttggaaagaacaaaa	8	5	1	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	54557616	T	C	54557616	3	2	32	1	0	0	0	0	1	0	0	0	17092	1725	60	2	3770	2	UNC13C	15	54557616	Missense_Mutation	SNP	T	TCGA-KM-8477-01A-11D-2310-10	26075458	54557616	47973776	41	2385											
HBQ1	3049	mdanderson.org	37	chr16	230578	230578	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacacgacagaggccctggaAaggtgcggcaggctgggcgc	17	11	0	1	rs11863726		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	230578	A	G	230578	2	3	32	1	0	0	0	0	0	0	0	1	7044	11	1	4		4	HBQ1	16	230578	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10		230578	90124175	42	2386											
CRAMP1L	57585	ucsc.edu	37	chr16	1706144	1706144	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcccggggccaggtgaaAtgcccgcggagcggagctga	18	12	0	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	1706144	A	G	1706144	2	3	32	1	0	0	0	0	0	0	0	1	3875	98	4	4		4	CRAMP1L	16	1706144	Silent	SNP	A	TCGA-KM-8477-01A-11D-2310-10	1475566	1706144	88648609	43	2387											
SRRM2	23524	mdanderson.org	37	chr16	2813441	2813441	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagatacagtcattctgGgtcctcctcaccagatacca	7	14	3	2	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	2813441	G	T	2813441	3	4	32	1	0	0	0	0	1	0	0	0	15269	1232	43	5	2950	5	SRRM2	16	2813441	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	1107297	2813441	87541312	44	2388											
MLLT6	4302	broad.mit.edu	37	chr17	36873792	36873793	+	Frame_Shift_Ins	INS	-	-	C													ggggcccccagggacctcggINSccctgccccgcctcagccgc					novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	36873793	-	C	36873792	7	5	32	1	0	1	1	0	0	0	0	0	9707	1203	42	0	1801	0	MLLT6	17	36873792	Frame_Shift_Ins	INS	-	TCGA-KM-8477-01A-11D-2310-10		36873792	44321418	45	2389											
ZNF136	7695	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	12296934	12296934	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtctctgttttagggaaaAaatggaaggaccagaacatt	12	5	1	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		C	12296934	A	C	12296934	3	2	32	1	0	0	0	0	1	0	0	0	17831	15	1	5	146	5	ZNF136	19	12296934	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10		12296934	46832049	46	2390											
F2RL3	9002	mdanderson.org	37	chr19	17000632	17000632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgatgaacctcgcgGctgctgacctcctgctggcc	12	15	0	3	rs773902	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	17000632	G	A	17000632	3	1	32	1	0	0	0	0	1	0	0	0	5386	1203	42	3	364	3	F2RL3	19	17000632	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10	4703698	17000632	42128351	47	2391											
SLC7A10	56301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	33702229	33702229	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tagcccagcagcttctccccGaaggtctgggtgggcacagt	13	13	2	0	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	33702229	G	A	33702229	2	1	32	1	0	0	0	0	0	0	0	1	14791	1049	37	1		1	SLC7A10	19	33702229	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	16701597	33702229	25426754	48	2392											
CEACAM5	1048	broad.mit.edu	37	chr19	42219764	42219764	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtggatcctatacgtgccAagcccataactcagacactg	8	12	1	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		G	42219764	A	G	42219764	3	3	32	1	0	0	0	0	1	0	0	0	3224	130	5	4	913	4	CEACAM5	19	42219764	Missense_Mutation	SNP	A	TCGA-KM-8477-01A-11D-2310-10	8517535	42219764	16909219	49	2393											
PAX1	5075	mdanderson.org	37	chr20	21695347	21695347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcccgcggggtgcacgccCagccagcccccaggcccagc	14	21	0	0	rs17861061	byfrequency	TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	21695347	C	T	21695347	3	4	32	1	0	0	0	0	1	0	0	0	11557	594	21	4	1529	4	PAX1	20	21695347	Missense_Mutation	SNP	C	TCGA-KM-8477-01A-11D-2310-10		21695347	41330173	50	2394											
CTNNBL1	56259	broad.mit.edu;hgsc.bcm.edu	37	chr20	36470751	36470752	+	Frame_Shift_Ins	INS	-	-	A													ctctttcaggttgacagactINSaatggagttgcattttaaat					novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	36470752	-	A	36470751	7	5	32	1	0	1	1	0	0	0	0	0	4049	1522	53	0	1372	0	CTNNBL1	20	36470751	Frame_Shift_Ins	INS	-	TCGA-KM-8477-01A-11D-2310-10	14775404	36470751	26554769	51	2395	63	2									
CTNNBL1	56259	bcgsc.ca	37	chr20	36470752	36470753	+	Frame_Shift_Ins	INS	-	-	A													tctttcaggttgacagactaINSatggagttgcattttaaata					novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	36470753	-	A	36470752	7	5	32	1	0	1	1	0	0	0	0	0	4049	349	13	0	1373	0	CTNNBL1	20	36470752	Frame_Shift_Ins	INS	-	TCGA-KM-8477-01A-11D-2310-10	1	36470752	26554768	52	2396	63	2									
NTSR1	4923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	61386087	61386087	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtggtcatctcggtcctGaacaccatcatcgccaacaa	8	13	3	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	61386087	G	T	61386087	2	4	32	1	0	0	0	0	0	0	0	1	10789	1277	45	5		5	NTSR1	20	61386087	Silent	SNP	G	TCGA-KM-8477-01A-11D-2310-10	24915335	61386087	1639433	53	2397											
USP9X	8239	broad.mit.edu	37	chrX	41010226	41010226	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgctttatagaagaacttcGcacaaatgacaaatgggtta	8	7	0	3	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		T	41010226	G	T	41010226	3	4	32	1	0	0	0	0	1	0	0	0	17196	1087	38	5	1725	5	USP9X	23	41010226	Missense_Mutation	SNP	G	TCGA-KM-8477-01A-11D-2310-10		41010226	114260334	54	2398											
RBM10	8241	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	47041266	47041266	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaatcctacagccagtaccGtgagtagccacagcctgtgg	12	12	0	1	novel		TCGA-KM-8477-01A-11D-2310-10	TCGA-KM-8477-10A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ecbfd89-393f-4126-aa1c-951a2c23ef89	685b8712-1fe3-49fc-8f73-a1d25a089282		A	47041266	G	A	47041266	5	1	32	1	0	0	0	0	0	0	1	0	13203	1159	40	1	1748	1	RBM10	23	47041266	Splice_Site	SNP	G	TCGA-KM-8477-01A-11D-2310-10	6031040	47041266	108229294	55	2399											
BMP8A	353500	broad.mit.edu	37	chr1	39987055	39987055	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttctgtctcagggcacagCgtggatcctggcctggccgg	14	13	2	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	39987055	C	T	39987055	2	4	33	1	0	0	0	0	0	0	0	1	1471	767	27	1		1	BMP8A	1	39987055	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10		39987055	209263566	1	2400											
MYBPHL	343263	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	109840820	109840820	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gattagtaggttcactgtgtCcccaaccttccggatgtagg	11	10	1	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	109840820	C	A	109840820	3	1	33	1	0	0	0	0	1	0	0	0	10093	855	30	5	887	5	MYBPHL	1	109840820	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	69853765	109840820	139409801	2	2401											
GSTM5	2949	mdanderson.org	37	chr1	110257835	110257836	+	Silent	DNP	CT	CT	TC													tgcttggacgccttcctaaaCttgaaggacttcatctcccg					rs61744262	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		TC	110257836	CT	TC	110257835	2	4	33	1	0	0	0	0	0	0	0	1	6899	564	20	4		4	GSTM5	1	110257835	Silent	DNP	CT	TCGA-KM-8639-01A-11D-2397-10	417015	110257835	138992786	3	2402											
RNPEP	6051	broad.mit.edu	37	chr1	201969125	201969125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaacccactcaacaagctcCgcgtgaagattgaaccaggt	8	12	1	3	rs140770038	alternate_allele	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	201969125	C	T	201969125	3	4	33	1	0	0	0	0	1	0	0	0	13604	652	23	1	1208	1	RNPEP	1	201969125	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	91711290	201969125	47281496	4	2403											
OBSCN	84033	broad.mit.edu	37	chr1	228471449	228471449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acattggccaggcccagtccCgggcccagctcctagtgcaa	11	16	0	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	228471449	C	T	228471449	3	4	33	1	0	0	0	0	1	0	0	0	10891	643	23	1	9109	1	OBSCN	1	228471449	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	26502324	228471449	20779172	5	2404											
SLC4A5	57835	broad.mit.edu;mdanderson.org	37	chr2	74492256	74492256	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgtggtaaggagccactGtccaaatccagcagcaccgt	10	12	1	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	74492256	G	C	74492256	3	2	33	1	0	0	0	0	1	0	0	0	14755	1368	48	5	2968	5	SLC4A5	2	74492256	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		74492256	168707117	6	2405											
PARD3B	117583	broad.mit.edu;hgsc.bcm.edu	37	chr2	206110537	206110538	+	Frame_Shift_Ins	INS	-	-	A													ggttcactcattggctggacINSaaaaatcgggtaagaaattc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	206110538	-	A	206110537	7	5	33	1	0	1	1	0	0	0	0	0	11523	479	17	0	2238	0	PARD3B	2	206110537	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	131618281	206110537	37088836	7	2406	64	2									
PARD3B	117583	bcgsc.ca	37	chr2	206110538	206110539	+	Frame_Shift_Ins	INS	-	-	A													gttcactcattggctggacaINSaaaatcgggtaagaaattcc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	206110539	-	A	206110538	7	5	33	1	0	1	1	0	0	0	0	0	11523	130	5	0	2239	0	PARD3B	2	206110538	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	1	206110538	37088835	8	2407	64	2									
TRIP12	9320	broad.mit.edu	37	chr2	230650546	230650546	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacagactccgcctgtttcAgcagctcctctcggttcaca	7	16	4	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	230650546	A	C	230650546	3	2	33	1	0	0	0	0	1	0	0	0	16661	188	7	5	1218	5	TRIP12	2	230650546	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	24540008	230650546	12548827	9	2408											
NCL	4691	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	232325533	232325533	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaacaacttttgcagcttTctttcctttggctggtgtag	10	8	1	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	232325533	T	C	232325533	3	2	33	1	0	0	0	0	1	0	0	0	10305	1792	62	4	1518	4	NCL	2	232325533	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	1674987	232325533	10873840	10	2409											
DNAJC13	23317	bcgsc.ca	37	chr3	132226100	132226100	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgattgtgacaaaacttAtggatcagaatttgtctaca	10	5	2	3	rs79953286	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	132226100	A	G	132226100	3	3	33	1	0	0	0	0	1	0	0	0	4669	449	16	4	5184	4	DNAJC13	3	132226100	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10		132226100	65796330	11	2410											
OTOL1	131149	broad.mit.edu	37	chr3	161220991	161220991	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggagagaagggggagaTgggggagaagggggagatgg	25	1	0	4	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	161220991	T	G	161220991	3	3	33	1	0	0	0	0	1	0	0	0	11383	1464	51	5	709	5	OTOL1	3	161220991	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	28994891	161220991	36801439	12	2411											
CAMK2N2	94032	broad.mit.edu	37	chr3	183977958	183977959	+	Frame_Shift_Del	DEL	GG	GG	-													ggcgcgtctacactccggacGgcggcttctcccccatcccc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	183977959	GG	-	183977958	7	5	33	1	0	1	0	1	0	0	0	0	2629	1116	39	0	16	0	CAMK2N2	3	183977958	Frame_Shift_Del	DEL	GG	TCGA-KM-8639-01A-11D-2397-10	22756967	183977958	14044472	13	2412											
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu	37	chr4	74012976	74012979	+	Frame_Shift_Del	DEL	TAAC	TAAC	-													acctgcagctaataagtattTaactaactccaaatgaccct					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	TAAC	TAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	74012979	TAAC	-	74012976	7	5	33	1	0	1	0	1	0	0	0	0	646	1763	61	0	6174	0	ANKRD17	4	74012976	Frame_Shift_Del	DEL	TAAC	TCGA-KM-8639-01A-11D-2397-10		74012976	117141300	14	2413	65	2									
ANKRD17	26057	bcgsc.ca	37	chr4	74012977	74012980	+	Frame_Shift_Del	DEL	TAAC	TAAC	-													cctgcagctaataagtatttAactaactccaaatgaccctc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	TAAC	TAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	74012980	TAAC	-	74012977	7	5	33	1	0	1	0	1	0	0	0	0	646	349	13	0	6175	0	ANKRD17	4	74012977	Frame_Shift_Del	DEL	TAAC	TCGA-KM-8639-01A-11D-2397-10	1	74012977	117141299	15	2414	65	2									
ABCE1	6059	mdanderson.org;bcgsc.ca	37	chr4	146044692	146044692	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttcatcatggccacctAtctagcggatcgcgtcatcg	9	13	4	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	146044692	A	G	146044692	3	3	33	1	0	0	0	0	1	0	0	0	64	449	16	4	1638	4	ABCE1	4	146044692	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	72031715	146044692	45109584	16	2415											
CLPTM1L	81037	hgsc.bcm.edu	37	chr5	1344897	1344897	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacccagcaggtgtgcacCacgtagaccacgaacacgcc	10	15	0	2	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	1344897	C	A	1344897	2	1	33	1	0	0	0	0	0	0	0	1	3584	581	21	5		5	CLPTM1L	5	1344897	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10		1344897	179570363	17	2416											
NUDT12	83594	hgsc.bcm.edu	37	chr5	102891744	102891744	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcatttccacaggttggGcaaaacttgtatcgactgtg	11	8	0	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	102891744	G	A	102891744	2	1	33	1	0	0	0	0	0	0	0	1	10807	1195	42	3		3	NUDT12	5	102891744	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	101546847	102891744	78023516	18	2417											
FER	2241	mdanderson.org	37	chr5	108133967	108133967	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacggttactggaaacagtAaagaaatttatggccctgag	10	6	0	2	rs2229085	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	108133967	A	G	108133967	2	3	33	1	0	0	0	0	0	0	0	1	5862	349	13	4		4	FER	5	108133967	Silent	SNP	A	TCGA-KM-8639-01A-11D-2397-10	5242223	108133967	72781293	19	2418											
ADAM19	8728	mdanderson.org	37	chr5	156997987	156997987	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgccttcctcacttccTcctgccaatacaagatgcaa	7	15	1	1	rs200503236	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	156997987	T	C	156997987	2	2	33	1	0	0	0	0	0	0	0	1	240	1565	54	2		2	ADAM19	5	156997987	Silent	SNP	T	TCGA-KM-8639-01A-11D-2397-10	48864020	156997987	23917273	20	2419											
ADAMTS2	9509	broad.mit.edu	37	chr5	178634608	178634608	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagcaggacctcgatgttgTagtcatcgtccgcagcatgc	11	13	1	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	178634608	T	A	178634608	3	1	33	1	0	0	0	0	1	0	0	0	265	1638	57	5	2989	5	ADAMTS2	5	178634608	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	21636621	178634608	2280652	21	2420											
HLA-DRB5	3127	mdanderson.org	37	chr6	32487353	32487353	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcctggatagaaaccaTtcacagagcagaccaggagg	12	10	1	3	rs114293611	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	32487353	T	C	32487353	3	2	33	1	0	0	0	0	1	0	0	0	7267	1493	52	4	370	4	HLA-DRB5	6	32487353	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10		32487353	138627714	22	2421											
TREML2	79865	mdanderson.org	37	chr6	41165977	41165977	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaccaccttggcctgggcAtcgtcctgcagcaagtagcg	12	13	0	1	rs41273770	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	41165977	A	G	41165977	2	3	33	1	0	0	0	0	0	0	0	1	16578	214	8	4		4	TREML2	6	41165977	Silent	SNP	A	TCGA-KM-8639-01A-11D-2397-10	8678624	41165977	129949090	23	2422											
INTS1	26173	bcgsc.ca	37	chr7	1513878	1513878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcggaacacgtgcggctGcagcagctccagcaggccca	14	15	0	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	1513878	G	T	1513878	3	4	33	1	0	0	0	0	1	0	0	0	7836	1328	46	5	849	5	INTS1	7	1513878	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		1513878	157624785	24	2423											
CDK13	8621	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	40132819	40132819	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actcaggccacctccagaacCtagcactccggtgtcgggta	10	15	1	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	40132819	C	G	40132819	3	3	33	1	0	0	0	0	1	0	0	0	3158	681	24	5	3721	5	CDK13	7	40132819	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	38618941	40132819	119005844	25	2424											
CNOT4	4850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	135079031	135079031	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttggtcttgaacggacagTtccttctcaatcaggtctgc	11	10	4	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	135079031	T	C	135079031	2	2	33	1	0	0	0	0	0	0	0	1	3650	1722	60	2		2	CNOT4	7	135079031	Silent	SNP	T	TCGA-KM-8639-01A-11D-2397-10	94946212	135079031	24059632	26	2425											
ANXA13	312	bcgsc.ca	37	chr8	124710664	124710664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaggacctcaatgaggaCggactcatctgtgcccagac	11	13	3	2	rs6995099	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	124710664	C	T	124710664	3	4	33	1	0	0	0	0	1	0	0	0	717	536	19	1	660	1	ANXA13	8	124710664	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10		124710664	21653358	27	2426											
RMI1	80010	bcgsc.ca	37	chr9	86616443	86616443	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccgtcttggtgttctctTattgaaaccagaaaacgtga	8	8	2	3	rs200956667		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	86616443	T	C	86616443	3	2	33	1	0	0	0	0	1	0	0	0	13490	1764	61	4	544	4	RMI1	9	86616443	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10		86616443	54596988	28	2427											
TSC1	7248	broad.mit.edu;hgsc.bcm.edu	37	chr9	135779084	135779093	+	Frame_Shift_Del	DEL	CGGAGGAGCC	CGGAGGAGCC	-													ctgctgctttgatcaccttgCggaggagccgcctgttccgg					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CGGAGGAGCC	CGGAGGAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	135779093	CGGAGGAGCC	-	135779084	7	5	33	1	0	1	0	1	0	0	0	0	16710	768	27	0	1360	0	TSC1	9	135779084	Frame_Shift_Del	DEL	CGGAGGAGCC	TCGA-KM-8639-01A-11D-2397-10	49162641	135779084	5434347	29	2428	66	2									
TSC1	7248	bcgsc.ca	37	chr9	135779085	135779094	+	Frame_Shift_Del	DEL	CGGAGGAGCC	CGGAGGAGCC	-													tgctgctttgatcaccttgcGgaggagccgcctgttccgga					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CGGAGGAGCC	CGGAGGAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	135779094	CGGAGGAGCC	-	135779085	7	5	33	1	0	1	0	1	0	0	0	0	16710	1116	39	0	1361	0	TSC1	9	135779085	Frame_Shift_Del	DEL	CGGAGGAGCC	TCGA-KM-8639-01A-11D-2397-10	1	135779085	5434346	30	2429	66	2									
GPR158	57512	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr10	25464834	25464834	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtaccaggcgctggtgtGgagccttctggagggcgagc	18	9	1	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	25464834	G	A	25464834	4	1	33	1	0	0	0	0	0	1	0	0	6720	1357	47	4	487	4	GPR158	10	25464834	Nonsense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		25464834	110069913	31	2430											
ZNF33A	7581	bcgsc.ca	37	chr10	38344700	38344700	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagagaacacacacagggCagaaaccctttgcatgtccc	8	13	1	2	rs2505232	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	38344700	C	G	38344700	3	3	33	1	0	0	0	0	1	0	0	0	17959	711	25	5	1662	5	ZNF33A	10	38344700	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	12879866	38344700	97190047	32	2431											
SEC23IP	11196	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	121652313	121652313	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatggccgagagaaaacctAacggtggcagcggcggcgcc	15	13	0	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	121652313	A	C	121652313	3	2	33	1	0	0	0	0	1	0	0	0	14090	362	13	5	21	5	SEC23IP	10	121652313	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	83307613	121652313	13882434	33	2432											
TRIM22	10346	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	5717467	5717467	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagggagcagtgcaatggAtttctcagtaaaggtagaca	12	7	1	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	5717467	A	G	5717467	3	3	33	1	0	0	0	0	1	0	0	0	16601	333	12	4	7	4	TRIM22	11	5717467	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10		5717467	129289049	34	2433											
PACS1	55690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66008957	66008957	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggactactggctgggccAccccggggagcggaggaggg	21	10	0	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	66008957	A	G	66008957	3	3	33	1	0	0	0	0	1	0	0	0	11451	159	6	2	2575	2	PACS1	11	66008957	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	60291490	66008957	68997559	35	2434											
BIRC3	330	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	102206944	102206944	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgtgttatatgagcaTttatttggtgagtgatagaa	12	2	0	4	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	102206944	T	G	102206944	3	3	33	1	0	0	0	0	1	0	0	0	1441	1490	52	5	1594	5	BIRC3	11	102206944	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	36197987	102206944	32799572	36	2435											
KCNH5	27133	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr14	63174364	63174364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctggggtacgcttttttcCgacagtatttttaaaatttc	8	8	0	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	63174364	C	T	63174364	2	4	33	1	0	0	0	0	0	0	0	1	8096	639	23	1		1	KCNH5	14	63174364	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10		63174364	44175176	37	2436											
VPS18	57617	bcgsc.ca	37	chr15	41191887	41191887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgcctggatgatgggggatGgtgtgttgtatggggcattg	19	4	0	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	41191887	G	T	41191887	3	4	33	1	0	0	0	0	1	0	0	0	17300	1348	47	5	885	5	VPS18	15	41191887	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		41191887	61339505	38	2437											
SPTBN5	51332	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	42143342	42143342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaggagggctatggaagCtactttctgaggagagatga	15	5	2	3	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	42143342	C	T	42143342	3	4	33	1	0	0	0	0	1	0	0	0	15222	797	28	4	290	4	SPTBN5	15	42143342	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	951455	42143342	60388050	39	2438											
CYP1A2	1544	ucsc.edu	37	chr15	75047426	75047426	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctgcgcttctccatcaaCtgaagaagacaccaccattc	7	15	2	3	rs2470890	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	75047426	C	T	75047426	2	4	33	1	0	0	0	0	0	0	0	1	4181	564	20	4		4	CYP1A2	15	75047426	Silent	SNP	C	TCGA-KM-8639-01A-11D-2397-10	32904084	75047426	27483966	40	2439											
AMDHD2	51005	broad.mit.edu	37	chr16	2570776	2570776	+	Frame_Shift_Del	DEL	T	T	-													cactgcgtccccagggaggaTctgtgggtgcgcggaggccg					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	2570776	T	-	2570776	7	5	33	1	0	1	0	1	0	0	0	0	568	1432	50	0	96	0	AMDHD2	16	2570776	Frame_Shift_Del	DEL	T	TCGA-KM-8639-01A-11D-2397-10		2570776	87783977	41	2440	67	2									
AMDHD2	51005	broad.mit.edu	37	chr16	2570778	2570778	+	Frame_Shift_Del	DEL	T	T	-													ctgcgtccccagggaggatcTgtgggtgcgcggaggccgca					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	2570778	T	-	2570778	7	5	33	1	0	1	0	1	0	0	0	0	568	1580	55	0	98	0	AMDHD2	16	2570778	Frame_Shift_Del	DEL	T	TCGA-KM-8639-01A-11D-2397-10	2	2570778	87783975	42	2441	67	2									
DNAJA2	10294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	46991077	46991077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgaagctctacctcctctGtttctccaattatgttagga	6	12	3	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	46991077	G	A	46991077	3	1	33	1	0	0	0	0	1	0	0	0	4649	1377	48	4	139	4	DNAJA2	16	46991077	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	44420299	46991077	43363676	43	2442											
BCAR1	9564	broad.mit.edu	37	chr16	75263529	75263530	+	Frame_Shift_Del	DEL	CT	CT	-													gggtactgcaaggcagcggcCttggtggtggccacgatgcc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	75263530	CT	-	75263529	7	5	33	1	0	1	0	1	0	0	0	0	1352	680	24	0	123	0	BCAR1	16	75263529	Frame_Shift_Del	DEL	CT	TCGA-KM-8639-01A-11D-2397-10	28272452	75263529	15091224	44	2443	68	2									
BCAR1	9564	broad.mit.edu	37	chr16	75263533	75263534	+	Frame_Shift_Ins	INS	-	-	T													ctgcaaggcagcggccttggINStggtggccacgatgccgcgc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		T	75263534	-	T	75263533	7	5	33	1	0	1	1	0	0	0	0	0	1352	1261	44	0	127	0	BCAR1	16	75263533	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	4	75263533	15091220	45	2444	68	2									
USP10	9100	mdanderson.org	37	chr16	84797726	84797726	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacggccccaaaaaccactcGgtcaatgaagaagagcagga	10	11	1	3	rs117002428	byfrequency;by1000genomes	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	84797726	G	A	84797726	2	1	33	1	0	0	0	0	0	0	0	1	17147	1103	39	1		1	USP10	16	84797726	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	9534193	84797726	5557027	46	2445											
CCDC144B	284047	broad.mit.edu	37	chr17	18454926	18454927	+	RNA	INS	-	-	C													atttccaacgcaaggtgactINStaggactggccttgtagcat					rs201304632		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	18454927	-	C	18454926	6	5	33	0	1	1	1	0	0	0	0	0	2803	1624	56	0		0	CCDC144B	17	18454926	RNA	INS	-	TCGA-KM-8639-01A-11D-2397-10		18454926	62740284	47	2446											
LMNB2	84823	broad.mit.edu	37	chr19	2434856	2434857	+	Frame_Shift_Ins	INS	-	-	A													ggcctccttcagctcctcgcINSgagccgcactggccgccttg					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	2434857	-	A	2434856	7	5	33	1	0	1	1	0	0	0	0	0	8914	768	27	0	979	0	LMNB2	19	2434856	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10		2434856	56694127	48	2447											
TMED1	11018	broad.mit.edu;hgsc.bcm.edu	37	chr19	10943859	10943865	+	Frame_Shift_Del	DEL	CCAGCCG	CCAGCCG	-													gagcatctggatgctgcgctCcagccgggtccgcatggtct					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CCAGCCG	CCAGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	10943865	CCAGCCG	-	10943859	7	5	33	1	0	1	0	1	0	0	0	0	16106	864	30	0	191	0	TMED1	19	10943859	Frame_Shift_Del	DEL	CCAGCCG	TCGA-KM-8639-01A-11D-2397-10	8509003	10943859	48185124	49	2448	69	2									
TMED1	11018	bcgsc.ca	37	chr19	10943860	10943866	+	Frame_Shift_Del	DEL	CCAGCCG	CCAGCCG	-													agcatctggatgctgcgctcCagccgggtccgcatggtctc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	CCAGCCG	CCAGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		-	10943866	CCAGCCG	-	10943860	7	5	33	1	0	1	0	1	0	0	0	0	16106	581	21	0	192	0	TMED1	19	10943860	Frame_Shift_Del	DEL	CCAGCCG	TCGA-KM-8639-01A-11D-2397-10	1	10943860	48185123	50	2449	69	2									
ZNF799	90576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	12501695	12501695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttcttacatgtgttaCactcataaggtttctctcct	6	10	3	0	rs201843472		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	12501695	C	A	12501695	3	1	33	1	0	0	0	0	1	0	0	0	18269	478	17	5	418	5	ZNF799	19	12501695	Missense_Mutation	SNP	C	TCGA-KM-8639-01A-11D-2397-10	1557835	12501695	46627288	51	2450											
GIPC1	10755	broad.mit.edu	37	chr19	14593617	14593618	+	Frame_Shift_Ins	INS	-	-	A													agctgggtgtggaacacgagINSgcggggccgcagggctgggg					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	14593618	-	A	14593617	7	5	33	1	0	1	1	0	0	0	0	0	6448	1000	35	0	853	0	GIPC1	19	14593617	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	2091922	14593617	44535366	52	2451											
ZNF101	94039	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	19790063	19790063	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcagccagattcctgatTgtcacctgaacaagaaaagt	7	10	2	4	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	19790063	T	C	19790063	3	2	33	1	0	0	0	0	1	0	0	0	17819	1812	63	4	279	4	ZNF101	19	19790063	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	5196446	19790063	39338920	53	2452											
CEACAM5	1048	mdanderson.org	37	chr19	42213772	42213772	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggatggcaaccgtcaaattAtaggatatgtaataggaact	10	5	1	0	rs12971352	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		G	42213772	A	G	42213772	3	3	33	1	0	0	0	0	1	0	0	0	3224	449	16	4	244	4	CEACAM5	19	42213772	Missense_Mutation	SNP	A	TCGA-KM-8639-01A-11D-2397-10	22423709	42213772	16915211	54	2453											
MYH7B	57644	broad.mit.edu;bcgsc.ca	37	chr20	33577581	33577581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctggaggaggaatgcatGttccccaaggcctcagacgc	12	12	1	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	33577581	G	A	33577581	3	1	33	1	0	0	0	0	1	0	0	0	10118	1377	48	4	1822	4	MYH7B	20	33577581	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		33577581	29447939	55	2454											
C20orf111	51526	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	42825743	42825743	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attttcttgggaatatacaaGtaatactccatgtagcctga	7	7	1	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	42825743	G	C	42825743	4	2	33	1	0	0	0	0	0	1	0	0	2100	1024	36	5	54	5	C20orf111	20	42825743	Nonsense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	9248162	42825743	20199777	56	2455											
NCOA3	8202	hgsc.bcm.edu	37	chr20	46279839	46279839	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcaacaGcagcagcagcagcagcagca	12	14	0	0	rs2664555		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	46279839	G	A	46279839	2	1	33	1	0	0	0	0	0	0	0	1	10309	962	34	4		4	NCOA3	20	46279839	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	3454096	46279839	16745681	57	2456											
MYO18B	84700	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	26351240	26351240	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcgggagagcagccaGtactaccagcggcgcctgga	15	13	0	1	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	26351240	G	C	26351240	3	2	33	1	0	0	0	0	1	0	0	0	10144	1020	36	5	6216	5	MYO18B	22	26351240	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10		26351240	24953326	58	2457											
APOL5	80831	mdanderson.org	37	chr22	36122931	36122931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacacatccctttctggacGgctagaggggtgcagagagc	14	10	1	3	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	36122931	G	A	36122931	2	1	33	1	0	0	0	0	0	0	0	1	811	1103	39	1		1	APOL5	22	36122931	Silent	SNP	G	TCGA-KM-8639-01A-11D-2397-10	9771691	36122931	15181635	59	2458											
NLGN4X	57502	mdanderson.org;bcgsc.ca	37	chrX	6069116	6069116	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcatcaaagtatccaaaTtggcggtaaaccagatgggc	11	8	2	1	rs145307351		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	6069116	T	C	6069116	3	2	33	1	0	0	0	0	1	0	0	0	10543	1493	52	4	2078	4	NLGN4X	23	6069116	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10		6069116	149201444	60	2459											
WWC3	55841	broad.mit.edu	37	chrX	10085451	10085452	+	Frame_Shift_Ins	INS	-	-	A													acgccccagtccctggcatcINSgctgtcctcccgctcctcgc					novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	10085452	-	A	10085451	7	5	33	1	0	1	1	0	0	0	0	0	17519	893	31	0	1390	0	WWC3	23	10085451	Frame_Shift_Ins	INS	-	TCGA-KM-8639-01A-11D-2397-10	4016335	10085451	145185109	61	2460											
TBC1D25	4943	bcgsc.ca	37	chrX	48418659	48418659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccagccaagtggcagacGctggttttggtggccacagg	14	13	0	1	rs235836	byfrequency	TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		A	48418659	G	A	48418659	3	1	33	1	0	0	0	0	1	0	0	0	15716	1087	38	1	1385	1	TBC1D25	23	48418659	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	38333208	48418659	106851901	62	2461											
SATL1	340562	mdanderson.org	37	chrX	84363716	84363716	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgttgcagcatgcctgGttggctcctacctaattgcc	9	12	1	0	rs141330942		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	84363716	G	C	84363716	3	2	33	1	0	0	0	0	1	0	0	0	13951	1261	44	5	1659	5	SATL1	23	84363716	Missense_Mutation	SNP	G	TCGA-KM-8639-01A-11D-2397-10	35945057	84363716	70906844	63	2462											
HCFC1	3054	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	153220585	153220585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggcggtggtggcggtgtTggtggtgcccgtctcgtggg	23	7	1	0	novel		TCGA-KM-8639-01A-11D-2397-10	TCGA-KM-8639-10A-01D-2397-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0b811c6a-8f05-44bd-ac33-fb720d189e71	04e0d4a3-5826-41d0-9e72-19c5d4ce08ff		C	153220585	T	C	153220585	3	2	33	1	0	0	0	0	1	0	0	0	7049	1812	63	4	2882	4	HCFC1	23	153220585	Missense_Mutation	SNP	T	TCGA-KM-8639-01A-11D-2397-10	68856869	153220585	2049975	64	2463											
ESPN	83715	ucsc.edu;bcgsc.ca	37	chr1	6512010	6512010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttcccgtgccgcccactActcctgcgccgggagtgcag	13	16	0	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	6512010	A	G	6512010	3	3	34	1	0	0	0	0	1	0	0	0	5293	391	14	2	2217	2	ESPN	1	6512010	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10		6512010	242738611	1	2464											
PARS2	25973	ucsc.edu	37	chr1	55224826	55224826	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctgcatcttgtcagcagCccttccatgacaccctggca	8	16	3	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	55224826	C	T	55224826	2	4	34	1	0	0	0	0	0	0	0	1	11546	726	26	3		3	PARS2	1	55224826	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	48712816	55224826	194025795	2	2465											
AMPD2	271	broad.mit.edu	37	chr1	110169839	110169839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggagcagcacccgtatgAgcactgtgagccaagcacca	12	13	0	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	110169839	A	G	110169839	3	3	34	1	0	0	0	0	1	0	0	0	586	304	11	2	990	2	AMPD2	1	110169839	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	54945013	110169839	139080782	3	2466											
PRG4	10216	bcgsc.ca	37	chr1	186276175	186276175	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacccaccacccccaagAagcctgccccaactaccccc	4	24	0	1	rs140988757	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	186276175	A	G	186276175	3	3	34	1	0	0	0	0	1	0	0	0	12570	247	9	4	1346	4	PRG4	1	186276175	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	76106336	186276175	62974446	4	2467											
FBXO41	150726	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	73493739	73493739	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagctcctcaatgaactgcTgcagccgcagcttggcgctg	13	13	1	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	73493739	T	G	73493739	3	3	34	1	0	0	0	0	1	0	0	0	5799	1580	55	5	1694	5	FBXO41	2	73493739	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		73493739	169705634	5	2468											
TMEM127	55654	broad.mit.edu	37	chr2	96920609	96920609	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcatagcgacgagtgatcTtcagagcaggatgcttcggc	14	9	2	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	96920609	T	C	96920609	3	2	34	1	0	0	0	0	1	0	0	0	16144	1609	56	2	353	2	TMEM127	2	96920609	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	23426870	96920609	146278764	6	2469											
INPP4A	3631	broad.mit.edu;mdanderson.org	37	chr2	99163146	99163146	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagctgcacaaatttgaagaGaccaagaaacagtaagtagc	9	7	0	3	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	99163146	G	A	99163146	2	1	34	1	0	0	0	0	0	0	0	1	7813	933	33	4		4	INPP4A	2	99163146	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	2242537	99163146	144036227	7	2470											
FOXD4L1	200350	mdanderson.org	37	chr2	114257162	114257162	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagccggcaaagcccccctActcgtacatcgcgctcatca	8	18	2	0	rs201655302		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	114257162	A	C	114257162	3	2	34	1	0	0	0	0	1	0	0	0	6049	391	14	5	331	5	FOXD4L1	2	114257162	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	15094016	114257162	128942211	8	2471											
SCN3A	6328	ucsc.edu	37	chr2	166032778	166032778	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtttgttctcatcatcatTatcttgttcctttttgggct	7	8	4	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	166032778	T	C	166032778	3	2	34	1	0	0	0	0	1	0	0	0	14015	1754	61	4	6075	4	SCN3A	2	166032778	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	51775616	166032778	77166595	9	2472											
TUBA4A	7277	broad.mit.edu	37	chr2	220115802	220115802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcagatgtcatagattgcttCgttgtccaccatgaaggcac	10	10	1	3	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	220115802	C	T	220115802	3	4	34	1	0	0	0	0	1	0	0	0	16855	893	31	1	731	1	TUBA4A	2	220115802	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	54083024	220115802	23083571	10	2473											
SPEG	10290	hgsc.bcm.edu;ucsc.edu	37	chr2	220354242	220354242	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctagccaggccttgtcctcGctcaaggctgtgggtccacc	11	16	1	0	rs148685205	by1000genomes	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	220354242	G	A	220354242	2	1	34	1	0	0	0	0	0	0	0	1	15136	1074	38	1		1	SPEG	2	220354242	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	238440	220354242	22845131	11	2474											
SEPT2	4735	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	242283310	242283310	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgaagctgagaaccatgctCatgtaagacatttggtgtgt	11	7	1	3	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	242283310	C	A	242283310	2	1	34	1	0	0	0	0	0	0	0	1	14161	813	29	5		5	SEPT2	2	242283310	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	21929068	242283310	916063	12	2475											
RFT1	91869	broad.mit.edu	37	chr3	53139767	53139767	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaactttcctctattggctgGaaaattaatctggccacaag	7	9	2	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	53139767	G	A	53139767	2	1	34	1	0	0	0	0	0	0	0	1	13349	1165	41	3		3	RFT1	3	53139767	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10		53139767	144882663	13	2476											
ALCAM	214	broad.mit.edu	37	chr3	105269023	105269023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatagtaaaattatcatttCccctgaagagaatgttacat	5	6	1	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	105269023	C	T	105269023	3	4	34	1	0	0	0	0	1	0	0	0	487	855	30	3	1473	3	ALCAM	3	105269023	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	52129256	105269023	92753407	14	2477											
PARP14	54625	broad.mit.edu	37	chr3	122433231	122433231	+	Frame_Shift_Del	DEL	G	G	-													cctctgttttgcaggagtgtGaaaaaaaaaattactcatcc					novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		-	122433231	G	-	122433231	7	5	34	1	0	1	0	1	0	0	0	0	11537	1291	45	0	4001	0	PARP14	3	122433231	Frame_Shift_Del	DEL	G	TCGA-KN-8418-01A-11D-2310-10	17164208	122433231	75589199	15	2478											
MUC4	4585	broad.mit.edu	37	chr3	195507051	195507051	+	Silent	SNP	T	T	C													gtggcctgacctgtggatgcTgaggaagtgtcggtgacagg					novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	195507051	T	C	195507051	2	2	34	1	0	0	0	0	0	0	0	1	10056	1567	55	2		2	MUC4	3	195507051	Silent	SNP	T	TCGA-KN-8418-01A-11D-2310-10	73073820	195507051	2515379	16	2479	70	2	1	26		4	3	6172	N	T_G_C	5.965582e-05
MUC4	4585	broad.mit.edu	37	chr3	195507059	195507059	+	Missense_Mutation	SNP	T	T	C													acctgtggatgctgaggaagTgtcggtgacaggaagagggg					rs76367261		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	195507059	T	C	195507059	3	2	34	1	0	0	0	0	1	0	0	0	10056	1696	59	2		2	MUC4	3	195507059	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	8	195507059	2515371	17	2480	70	2	1	26		4	3	6172	N	T_G_C	5.965582e-05
MUC4	4585	mdanderson.org	37	chr3	195509180	195509180	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tactgaggaaaggctggtgaCaggaagaggggtggcgtgac	19	5	0	4	rs201718547	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	195509180	C	G	195509180	3	3	34	1	0	0	0	0	1	0	0	0	10056	478	17	5		5	MUC4	3	195509180	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	2121	195509180	2513250	18	2481			1	26		4	3	6172	N	T_G_C	5.965582e-05
MUC4	4585	mdanderson.org	37	chr3	195513222	195513222	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcagtgacaagaagaggGctggcgtgacctgtggatgc	17	8	1	4	rs2688554	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	195513222	G	A	195513222	2	1	34	1	0	0	0	0	0	0	0	1	10056	1194	42	3		3	MUC4	3	195513222	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	4042	195513222	2509208	19	2482			1	26		4	3	6172	N	T_G_C	5.965582e-05
PRKAA1	5562	broad.mit.edu	37	chr5	40775606	40775606	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtactgatgacctggtacCtggtgagagaaaacattgtc	12	7	0	4	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	40775606	C	T	40775606	5	4	34	1	0	0	0	0	0	0	1	0	12582	695	24	4	1487	4	PRKAA1	5	40775606	Splice_Site	SNP	C	TCGA-KN-8418-01A-11D-2310-10		40775606	140139654	20	2483											
HEATR7B2	133558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	41045851	41045851	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcagctgaaaaaccaaccttCtcagtggagttattgctgta	8	9	2	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	41045851	C	T	41045851	2	4	34	1	0	0	0	0	0	0	0	1	7093	912	32	4		4	HEATR7B2	5	41045851	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	270245	41045851	139869409	21	2484											
DHFR	1719	broad.mit.edu;mdanderson.org	37	chr5	79945302	79945302	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cttcttacccataatcaccaGattctgtttacctataaaat	2	11	3	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	79945302	G	A	79945302	2	1	34	1	0	0	0	0	0	0	0	1	4518	933	33	4		4	DHFR	5	79945302	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	38899451	79945302	100969958	22	2485											
ATXN1	6310	broad.mit.edu	37	chr6	16326646	16326646	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctcggtgctccccgacGgcgaactgtatcacggccac	13	15	1	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	16326646	G	A	16326646	2	1	34	1	0	0	0	0	0	0	0	1	1213	1103	39	1		1	ATXN1	6	16326646	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10		16326646	154788421	23	2486											
HEATR2	54919	mdanderson.org	37	chr7	814788	814788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatccagagaaactcatcaGgatttatcctggtaggacat	10	8	2	1	rs3922641	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	814788	G	A	814788	3	1	34	1	0	0	0	0	1	0	0	0	7086	1000	35	4	2270	4	HEATR2	7	814788	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		814788	158323875	24	2487											
SRRM3	222183	broad.mit.edu	37	chr7	75914932	75914933	+	Splice_Site	INS	-	-	C													cagctttttcttcccggcagINScgccgcaagcgtcctattcc					novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	75914933	-	C	75914932	8	5	34	1	0	1	1	0	0	0	1	0	15270	985	34	0	1787	0	SRRM3	7	75914932	Splice_Site	INS	-	TCGA-KN-8418-01A-11D-2310-10	75100144	75914932	83223731	25	2488											
MLL3	58508	mdanderson.org	37	chr7	151932990	151932990	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcacctcgaggtctcCgctttcctggaaatccagac	9	15	1	1	rs76844681		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	151932990	C	T	151932990	3	4	34	1	0	0	0	0	1	0	0	0	9699	652	23	1	12230	1	MLL3	7	151932990	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	76018058	151932990	7205673	26	2489											
FAM86B1	85002	mdanderson.org	37	chr8	12042969	12042969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcccgcttgtgctcccGgcaggcagccagcctctgca	13	16	1	0	rs201172089	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	12042969	G	A	12042969	3	1	34	1	0	0	0	0	1	0	0	0	5693	1115	39	1	192	1	FAM86B1	8	12042969	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		12042969	134321053	27	2490											
FAM86B2	653333	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	12287958	12287958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctccgtgtggacagcctcGtgctgggggcagacagagtg	18	10	0	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	12287958	G	T	12287958	3	4	34	1	0	0	0	0	1	0	0	0	5694	1136	40	5	769	5	FAM86B2	8	12287958	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10	244989	12287958	134076064	28	2491											
NOTCH1	4851	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	139395222	139395222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcggagatgacggccggcgCgtcctcctcttcctcgctgt	13	15	1	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	139395222	C	T	139395222	3	4	34	1	0	0	0	0	1	0	0	0	10626	768	27	1	1967	1	NOTCH1	9	139395222	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10		139395222	1818209	29	2492											
PITRM1	10531	mdanderson.org	37	chr10	3208557	3208557	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtactgtccatgggagtAgtacggaactgcacgctagg	13	10	0	0	rs12359035	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	3208557	A	G	3208557	2	3	34	1	0	0	0	0	0	0	0	1	12033	407	15	2		2	PITRM1	10	3208557	Silent	SNP	A	TCGA-KN-8418-01A-11D-2310-10		3208557	132326190	30	2493											
MSRB2	22921	broad.mit.edu	37	chr10	23399207	23399207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgaataacaaggaagcaGgaatgtatcattgcgtgtgc	11	7	1	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	23399207	G	A	23399207	3	1	34	1	0	0	0	0	1	0	0	0	9966	1001	35	4	266	4	MSRB2	10	23399207	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10	20190650	23399207	112135540	31	2494											
EIF5AL1	143244	mdanderson.org	37	chr10	81272627	81272627	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatatgaagatatctgcccGtcaactcataatatggatgt	7	7	3	2	rs75496770		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	81272627	G	A	81272627	2	1	34	1	0	0	0	0	0	0	0	1	5082	1132	40	1		1	EIF5AL1	10	81272627	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	57873420	81272627	54262120	32	2495											
INPP5F	22876	ucsc.edu	37	chr10	121587065	121587065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggcttcatgtaactcctTctccttcagagagcagtagc	9	12	3	1	rs148162878		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	121587065	T	C	121587065	3	2	34	1	0	0	0	0	1	0	0	0	7819	1783	62	4	3250	4	INPP5F	10	121587065	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	40314438	121587065	13947682	33	2496											
BDNF	627	mdanderson.org;bcgsc.ca	37	chr11	27679447	27679447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagccaattctctttttgCtatccatggtaagggcccgc	9	13	1	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	27679447	C	T	27679447	3	4	34	1	0	0	0	0	1	0	0	0	1398	797	28	4	82	4	BDNF	11	27679447	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10		27679447	107327069	34	2497											
MTA2	9219	broad.mit.edu	37	chr11	62367694	62367694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgtccctgcgccggaaaAgacagacaacctttgcctcc	8	14	0	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	62367694	A	G	62367694	3	3	34	1	0	0	0	0	1	0	0	0	9987	72	3	2	1936	2	MTA2	11	62367694	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	34688247	62367694	72638822	35	2498											
BACE1	23621	broad.mit.edu;hgsc.bcm.edu	37	chr11	117163878	117163880	+	In_Frame_Del	DEL	CAG	CAG	-													taccagagactgcctgtgtaCagcgagtggtcgatacctcc					novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		-	117163880	CAG	-	117163878	7	5	34	1	0	1	0	1	0	0	0	0	1285	465	17	0	793	0	BACE1	11	117163878	In_Frame_Del	DEL	CAG	TCGA-KN-8418-01A-11D-2310-10	54796184	117163878	17842638	36	2499	71	2									
BACE1	23621	bcgsc.ca	37	chr11	117163879	117163881	+	In_Frame_Del	DEL	CAG	CAG	-													accagagactgcctgtgtacAgcgagtggtcgatacctcca					novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		-	117163881	CAG	-	117163879	7	5	34	1	0	1	0	1	0	0	0	0	1285	188	7	0	794	0	BACE1	11	117163879	In_Frame_Del	DEL	CAG	TCGA-KN-8418-01A-11D-2310-10	1	117163879	17842637	37	2500	71	2									
VWF	7450	ucsc.edu	37	chr12	6181608	6181608	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcatccaggagctgtcccTctggggtcaagggcatcaag	12	12	4	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	6181608	T	C	6181608	3	2	34	1	0	0	0	0	1	0	0	0	17352	1565	54	2	7619	2	VWF	12	6181608	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		6181608	127670287	38	2501											
SPERT	220082	mdanderson.org	37	chr13	46288145	46288145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagctgcgcgccctgcggAagatggtcagcaacatgtcc	14	12	1	1	rs7317245	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	46288145	A	G	46288145	3	3	34	1	0	0	0	0	1	0	0	0	15139	247	9	4	995	4	SPERT	13	46288145	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10		46288145	68881733	39	2502											
DMXL2	23312	broad.mit.edu	37	chr15	51787229	51787229	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgaattaccttgatgaAgtagctgcactcggtataaa	10	6	0	4	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	51787229	A	G	51787229	3	3	34	1	0	0	0	0	1	0	0	0	4632	72	3	2	4438	2	DMXL2	15	51787229	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10		51787229	50744163	40	2503											
HEXA	3073	broad.mit.edu	37	chr15	72640036	72640037	+	Frame_Shift_Ins	INS	-	-	T													cccggctcacctttactttaINSttatcaaacacctcctgcca					novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	72640037	-	T	72640036	7	5	34	1	0	1	1	0	0	0	0	0	7131	446	16	0	472	0	HEXA	15	72640036	Frame_Shift_Ins	INS	-	TCGA-KN-8418-01A-11D-2310-10	20852807	72640036	29891356	41	2504											
CHTF18	63922	broad.mit.edu	37	chr16	840180	840180	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcccttccccacagggcTctctcctccacgtcccatgg	6	21	1	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	840180	T	C	840180	3	2	34	1	0	0	0	0	1	0	0	0	3443	1551	54	2	628	2	CHTF18	16	840180	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		840180	89514573	42	2505											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7578396	7578396	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatctgagcagcgctcatgGtgggggcagcgcctcacaac	13	13	3	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	7578396	G	T	7578396	3	4	34	1	0	0	0	0	1	0	0	0	16486	1252	44	5	764	5	TP53	17	7578396	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		7578396	73616814	43	2506											
ATAD5	79915	broad.mit.edu	37	chr17	29161986	29161986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgttccttctgaaactgTcgacgaaatagtcaaaagtg	9	7	2	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	29161986	T	C	29161986	3	2	34	1	0	0	0	0	1	0	0	0	1080	1667	58	2	893	2	ATAD5	17	29161986	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10	21583590	29161986	52033224	44	2507											
GRB7	2886	ucsc.edu	37	chr17	37901742	37901742	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggcgtgtcattgagaAcccccgggaggctctgagtg	16	10	2	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		G	37901742	A	G	37901742	3	3	34	1	0	0	0	0	1	0	0	0	6817	43	2	2	1198	2	GRB7	17	37901742	Missense_Mutation	SNP	A	TCGA-KN-8418-01A-11D-2310-10	8739756	37901742	43293468	45	2508											
BPTF	2186	broad.mit.edu;mdanderson.org	37	chr17	65889530	65889530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatttcacggttgagcacCaaaaaggaagtgatcatgaa	10	6	2	3	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	65889530	C	T	65889530	2	4	34	1	0	0	0	0	0	0	0	1	1503	581	21	4		4	BPTF	17	65889530	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	27987788	65889530	15305680	46	2509											
MUC16	94025	mdanderson.org	37	chr19	8999395	8999395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcacaactactcaccatTgacatagagactgtccctgt	5	13	2	2	rs200813849		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	8999395	T	C	8999395	3	2	34	1	0	0	0	0	1	0	0	0	10051	1812	63	4	2859	4	MUC16	19	8999395	Missense_Mutation	SNP	T	TCGA-KN-8418-01A-11D-2310-10		8999395	50129588	47	2510											
MUC16	94025	mdanderson.org	37	chr19	9002587	9002587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcagcttccagtacagcCgctctctgtccagtccaggg	11	15	2	0	rs201053591		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	9002587	C	T	9002587	3	4	34	1	0	0	0	0	1	0	0	0	10051	652	23	1	3430	1	MUC16	19	9002587	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	3192	9002587	50126396	48	2511											
MUC16	94025	mdanderson.org	37	chr19	9018539	9018539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgaagttgagggtgaaCagcaccaggagagggccagc	17	7	0	4	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	9018539	C	T	9018539	2	4	34	1	0	0	0	0	0	0	0	1	10051	465	17	4		4	MUC16	19	9018539	Silent	SNP	C	TCGA-KN-8418-01A-11D-2310-10	15952	9018539	50110444	49	2512											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	13340907	13340907	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttcttaccaagctgcgggGtcatactcggcccagacacg	10	14	2	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	13340907	G	A	13340907	2	1	34	1	0	0	0	0	0	0	0	1	2563	1252	44	3		3	CACNA1A	19	13340907	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	4322368	13340907	45788076	50	2513											
SPINT2	10653	broad.mit.edu;mdanderson.org	37	chr19	38782514	38782514	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gggctgttcgtgatggtgttGatcctcttcctgggagcctc	14	10	1	2	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	38782514	G	A	38782514	2	1	34	1	0	0	0	0	0	0	0	1	15169	1281	45	4		4	SPINT2	19	38782514	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10	25441607	38782514	20346469	51	2514											
ZNF28	7576	mdanderson.org	37	chr19	53303332	53303332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccaggtgtgaatccctcCggaaagccttgtcacaaacc	10	13	1	1	rs142442328	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	53303332	C	T	53303332	3	4	34	1	0	0	0	0	1	0	0	0	17918	652	23	1	394	1	ZNF28	19	53303332	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	14520818	53303332	5825651	52	2515											
USP29	57663	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	57641826	57641826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgattccctggttctacccGttgaaccagacaagaatgcc	9	12	1	4	rs141050797	byfrequency	TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	57641826	G	A	57641826	3	1	34	1	0	0	0	0	1	0	0	0	17165	1145	40	1	1785	1	USP29	19	57641826	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10	4338494	57641826	1487157	53	2516											
TIAM1	7074	broad.mit.edu;hgsc.bcm.edu	37	chr21	32624307	32624307	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcatctccagctcccgccGgaagttctcgtacaccccct	7	19	3	0	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	32624307	G	A	32624307	3	1	34	1	0	0	0	0	1	0	0	0	15994	1115	39	1	3709	1	TIAM1	21	32624307	Missense_Mutation	SNP	G	TCGA-KN-8418-01A-11D-2310-10		32624307	15505588	54	2517											
IFNAR1	3454	broad.mit.edu	37	chr21	34727798	34727798	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagattcaggaaattattcTaatgaagatgaaagcgaaag	9	4	2	4	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		C	34727798	T	C	34727798	2	2	34	1	0	0	0	0	0	0	0	1	7605	1509	53	2		2	IFNAR1	21	34727798	Silent	SNP	T	TCGA-KN-8418-01A-11D-2310-10	2103491	34727798	13402097	55	2518											
DIP2A	23181	broad.mit.edu	37	chr21	47970588	47970588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctggaagggacgctgcacCcgtgtaatgtgctgatgtgc	14	9	1	1	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		T	47970588	C	T	47970588	3	4	34	1	0	0	0	0	1	0	0	0	4564	623	22	3	2942	3	DIP2A	21	47970588	Missense_Mutation	SNP	C	TCGA-KN-8418-01A-11D-2310-10	13242790	47970588	159307	56	2519											
NAGA	4668	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr22	42456379	42456379	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgaagttggtttcatctcgGaggccactgatgatgtcacc	12	9	3	3	novel		TCGA-KN-8418-01A-11D-2310-10	TCGA-KN-8418-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a90f951-ad96-4883-b97f-ac43395dae5d	3fd6a085-bd95-4632-af35-79f1ba65fe96		A	42456379	G	A	42456379	2	1	34	1	0	0	0	0	0	0	0	1	10219	1161	41	3		3	NAGA	22	42456379	Silent	SNP	G	TCGA-KN-8418-01A-11D-2310-10		42456379	8848187	57	2520											
CTH	1491	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	70897872	70897872	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacggaatggcagttgcCcagttcctggaatctaatcc	9	10	1	0	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	70897872	C	A	70897872	2	1	35	1	0	0	0	0	0	0	0	1	4040	610	22	5		5	CTH	1	70897872	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10		70897872	178352749	1	2521											
RPRD2	23248	broad.mit.edu	37	chr1	150445701	150445701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agactttcggcctagggaacCttttctcagcagagacccat	9	12	1	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	150445701	C	T	150445701	3	4	35	1	0	0	0	0	1	0	0	0	13712	681	24	4	4319	4	RPRD2	1	150445701	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	79547829	150445701	98804920	2	2522											
C1orf204	284677	ucsc.edu	37	chr1	159810538	159810538	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcagtcaggagaaggtagAgctctcatccatgcactcac	12	11	3	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	159810538	A	G	159810538	2	3	35	1	0	0	0	0	0	0	0	1	2047	291	11	2		2	C1orf204	1	159810538	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10	9364837	159810538	89440083	3	2523											
NAV1	89796	mdanderson.org	37	chr1	201618543	201618543	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagcagctgctcttcagCcagatgctgggtaagtcctg	13	11	2	1	rs6665525		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	201618543	C	T	201618543	2	4	35	1	0	0	0	0	0	0	0	1	10261	738	26	3		3	NAV1	1	201618543	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	41808005	201618543	47632078	4	2524											
FLVCR1	28982	mdanderson.org	37	chr1	213031948	213031948	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaccttcccggtgaatgggGccccccgggacagcctcgct	13	17	0	1	rs11120047	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	213031948	G	C	213031948	3	2	35	1	0	0	0	0	1	0	0	0	5994	1203	42	5	156	5	FLVCR1	1	213031948	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	11413405	213031948	36218673	5	2525											
HHIPL2	79802	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	222721242	222721242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggggctggaaagggggccCgtaatccaggcactgggggt	20	8	0	0	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	222721242	C	T	222721242	3	4	35	1	0	0	0	0	1	0	0	0	7152	652	23	1	2065	1	HHIPL2	1	222721242	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	9689294	222721242	26529379	6	2526											
MERTK	10461	mdanderson.org	37	chr2	112656372	112656372	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccccgcgctctggcgtagAggtgagtgcgcccggctggg	17	14	1	2	rs35898499		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	112656372	A	T	112656372	3	4	35	1	0	0	0	0	1	0	0	0	9556	318	11	5	62	5	MERTK	2	112656372	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10		112656372	130543001	7	2527											
RBPJ	3516	broad.mit.edu	37	chr4	26432510	26432511	+	Frame_Shift_Ins	INS	-	-	G													tgcagcaggagcaatccttcINSgagccaattcaagccaggtg					novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	26432511	-	G	26432510	7	5	35	1	0	1	1	0	0	0	0	0	13253	876	31	0	1489	0	RBPJ	4	26432510	Frame_Shift_Ins	INS	-	TCGA-KN-8419-01A-11D-2310-10		26432510	164721766	8	2528											
KIAA1211	57482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	57182677	57182677	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccagagccaagtgagccGtccaaggaggaccaggagag	15	11	0	3	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	57182677	G	A	57182677	2	1	35	1	0	0	0	0	0	0	0	1	8276	1132	40	1		1	KIAA1211	4	57182677	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	30750167	57182677	133971599	9	2529											
DSPP	1834	broad.mit.edu	37	chr4	88536259	88536264	+	In_Frame_Del	DEL	CAGTGA	CAGTGA	-													agcagtgatagcagtgacagCagtgatagcgacagcagcaa					rs200486992	alternate_allele	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	CAGTGA	CAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		-	88536264	CAGTGA	-	88536259	7	5	35	1	0	1	0	1	0	0	0	0	4819	709	25	0	2459	0	DSPP	4	88536259	In_Frame_Del	DEL	CAGTGA	TCGA-KN-8419-01A-11D-2310-10	31353582	88536259	102618017	10	2530											
FRG1	2483	mdanderson.org	37	chr4	190876268	190876268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttgggcgttcagatgcaAttggaccaagagaacaatgg	13	6	1	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	190876268	A	G	190876268	3	3	35	1	0	0	0	0	1	0	0	0	6098	101	4	4	412	4	FRG1	4	190876268	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	102340009	190876268	278008	11	2531											
KIF4B	285643	broad.mit.edu	37	chr5	154394949	154394949	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagcaggtcttctgacgcTtttaccactcagcatgctct	7	13	4	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	154394949	T	C	154394949	2	2	35	1	0	0	0	0	0	0	0	1	8365	1596	56	2		2	KIF4B	5	154394949	Silent	SNP	T	TCGA-KN-8419-01A-11D-2310-10		154394949	26520311	12	2532											
F12	2161	mdanderson.org	37	chr5	176831544	176831544	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagttccgcgcttgctcGgcagtcacgttccggtaggt	12	15	1	0	rs41309752		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	176831544	G	A	176831544	2	1	35	1	0	0	0	0	0	0	0	1	5379	1103	39	1		1	F12	5	176831544	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	22436595	176831544	4083716	13	2533											
FLT4	2324	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	180057729	180057729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgcaccacccccgtgtcctCgctgtccttgtctccggtgg	10	18	1	0	rs202015753		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	180057729	C	T	180057729	3	4	35	1	0	0	0	0	1	0	0	0	5993	893	31	1	3985	1	FLT4	5	180057729	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	3226185	180057729	857531	14	2534											
HLA-A	3105	mdanderson.org	37	chr6	29911119	29911119	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcctccgcgggtaccggcagGacgcctacgacggcaaggat	14	14	0	0	rs3173419	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	29911119	G	C	29911119	3	2	35	1	0	0	0	0	1	0	0	0	7253	1174	41	5	428	5	HLA-A	6	29911119	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		29911119	141203948	15	2535											
RSPH10B2	728194	mdanderson.org	37	chr7	6836259	6836259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacacgtgggtcaataataCgtacgtcttctttgtgaaca	8	9	3	1	rs2528353	bycluster	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	6836259	C	T	6836259	3	4	35	1	0	0	0	0	1	0	0	0	13799	536	19	1	5053	1	RSPH10B2	7	6836259	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10		6836259	152302404	16	2536											
DDC	1644	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr7	50596997	50596997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgatggatcactttggtcCgagcggccagcagggccacc	14	14	1	0	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	50596997	C	T	50596997	3	4	35	1	0	0	0	0	1	0	0	0	4357	652	23	1	1003	1	DDC	7	50596997	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	43760738	50596997	108541666	17	2537											
MUC17	140453	mdanderson.org	37	chr7	100680117	100680117	+	Missense_Mutation	SNP	T	T	C													ctcgactcttagtgaaggaaTgactccattaacaagcacac					rs147353603	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	100680117	T	C	100680117	3	2	35	1	0	0	0	0	1	0	0	0	10052	1464	51	4	5430	4	MUC17	7	100680117	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	50083120	100680117	58458546	18	2538	72	2									
MUC17	140453	mdanderson.org	37	chr7	100680120	100680120	+	Missense_Mutation	SNP	C	C	A													gactcttagtgaaggaatgaCtccattaacaagcacacctg					rs147991653	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	100680120	C	A	100680120	3	1	35	1	0	0	0	0	1	0	0	0	10052	565	20	5	5433	5	MUC17	7	100680120	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	3	100680120	58458543	19	2539	72	2									
GIMAP8	155038	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	150171183	150171183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcctccttgtggggaaaCgcggtgctggaaaaagtgca	14	9	0	0	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	150171183	C	T	150171183	3	4	35	1	0	0	0	0	1	0	0	0	6441	536	19	1	776	1	GIMAP8	7	150171183	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	49491063	150171183	8967480	20	2540											
EN2	2020	hgsc.bcm.edu	37	chr7	155251201	155251201	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcgaagcggacaccggGcgccggcgggctctgatgct	18	14	1	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	155251201	G	A	155251201	2	1	35	1	0	0	0	0	0	0	0	1	5149	1190	42	3		3	EN2	7	155251201	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	5080018	155251201	3887462	21	2541											
TNFRSF10C	8794	broad.mit.edu	37	chr8	22974315	22974315	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgctgaagagacaatgaAcaccagcccggggactcctg	12	12	0	3	rs61736405		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	22974315	A	C	22974315	3	2	35	1	0	0	0	0	1	0	0	0	16386	43	2	5	569	5	TNFRSF10C	8	22974315	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10		22974315	123389707	22	2542											
DENND3	22898	broad.mit.edu	37	chr8	142175380	142175380	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctcgacacccagtcggaGgaggacaggtgcttcactgt	13	12	1	0	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	142175380	G	A	142175380	2	1	35	1	0	0	0	0	0	0	0	1	4469	991	35	4		4	DENND3	8	142175380	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	119201065	142175380	4188642	23	2543											
SLC45A4	57210	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	142221657	142221657	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caactcgctgaggaaaagaaGatacgtcattcttctaagag	9	8	3	4	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	142221657	G	A	142221657	3	1	35	1	0	0	0	0	1	0	0	0	14741	942	33	4	119	4	SLC45A4	8	142221657	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	46277	142221657	4142365	24	2544											
AQP7	364	mdanderson.org	37	chr9	33385786	33385786	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgcctatcaccagcgcctCtgttcctggcagtgctgggt	12	13	2	0	rs76908057		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	33385786	C	G	33385786	3	3	35	1	0	0	0	0	1	0	0	0	833	922	32	5	432	5	AQP7	9	33385786	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10		33385786	107827645	25	2545											
TMEM2	23670	ucsc.edu;bcgsc.ca	37	chr9	74300250	74300250	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctgtccagcaggactggTaaatagcttagtccatgatg	11	10	0	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	74300250	T	C	74300250	3	2	35	1	0	0	0	0	1	0	0	0	16225	1638	57	2	140	2	TMEM2	9	74300250	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	40914464	74300250	66913181	26	2546											
SLC46A2	57864	bcgsc.ca	37	chr9	115652859	115652859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtagccccgcatcgtagaGggaggcagccacctgggacg	16	12	0	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	115652859	G	A	115652859	3	1	35	1	0	0	0	0	1	0	0	0	14743	1000	35	4	1340	4	SLC46A2	9	115652859	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	41352609	115652859	25560572	27	2547											
ZBTB34	403341	ucsc.edu	37	chr9	129642226	129642226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcccaccgcaagcagtgAcctccggatggagacgaccc	12	16	0	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	129642226	A	G	129642226	3	3	35	1	0	0	0	0	1	0	0	0	17642	275	10	2	538	2	ZBTB34	9	129642226	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	13989367	129642226	11571205	28	2548											
TUBB8	347688	mdanderson.org	37	chr10	93778	93778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggtggactgagagggtgGcgttgtagggctccaccacg	18	9	0	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	93778	G	A	93778	3	1	35	1	0	0	0	0	1	0	0	0	16867	1203	42	3	784	3	TUBB8	10	93778	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		93778	135440969	29	2549											
FRG2B	441581	mdanderson.org	37	chr10	135439077	135439077	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcttgattttttattcaaTgacaagctgcactccttttc	5	9	2	2	rs34204891	bycluster;alternate_allele	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	135439077	T	C	135439077	2	2	35	1	0	0	0	0	0	0	0	1	6099	1451	51	4		4	FRG2B	10	135439077	Silent	SNP	T	TCGA-KN-8419-01A-11D-2310-10	135345299	135439077	95670	30	2550											
TRIM48	79097	mdanderson.org	37	chr11	55032663	55032663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagcaaatgtgtggcaTtcacagggagacaaagaaga	14	5	1	4	rs200778682	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	55032663	T	C	55032663	3	2	35	1	0	0	0	0	1	0	0	0	16628	1493	52	4	338	4	TRIM48	11	55032663	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10		55032663	79973853	31	2551											
NAA40	79829	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	63719920	63719920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaaggaccgagagaaacGggaggaaatgacagatgacc	15	7	0	4	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	63719920	G	A	63719920	3	1	35	1	0	0	0	0	1	0	0	0	10203	1116	39	1	311	1	NAA40	11	63719920	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	8687257	63719920	71286596	32	2552											
KRT84	3890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	52777475	52777475	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aactgcctccgcaggttggtGatgtagctctcgaagagtgg	14	9	1	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	52777475	G	A	52777475	2	1	35	1	0	0	0	0	0	0	0	1	8559	1280	45	4		4	KRT84	12	52777475	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10		52777475	81074420	33	2553											
IRAK3	11213	bcgsc.ca	37	chr12	66597673	66597673	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcatttaattacaaactatGgtaaatgctgattcttataa	4	5	2	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	66597673	G	T	66597673	4	4	35	1	0	0	0	0	0	1	0	0	7885	1362	47	5	322	5	IRAK3	12	66597673	Nonsense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	13820198	66597673	67254222	34	2554											
SELPLG	6404	hgsc.bcm.edu	37	chr12	109017489	109017489	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtggtctgtgcctccaTggctgctggtgcagtggtct	15	10	2	0	rs143013043	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	109017489	T	G	109017489	3	3	35	1	0	0	0	0	1	0	0	0	14117	1464	51	5	647	5	SELPLG	12	109017489	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	42419816	109017489	24834406	35	2555											
OASL	8638	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	121471492	121471492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagctcagaaacgccaCcagctccacctctctggtgc	8	16	2	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	121471492	C	A	121471492	3	1	35	1	0	0	0	0	1	0	0	0	10881	507	18	5	1311	5	OASL	12	121471492	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	12454003	121471492	12380403	36	2556											
SPTB	6710	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	65245965	65245965	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctctcctccacccaaagCtgcagagaccaggaggcagg	11	15	1	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	65245965	C	T	65245965	5	4	35	1	0	0	0	0	0	0	1	0	15218	811	28	4	2642	4	SPTB	14	65245965	Splice_Site	SNP	C	TCGA-KN-8419-01A-11D-2310-10		65245965	42103575	37	2557											
AHNAK2	113146	mdanderson.org	37	chr14	105410417	105410417	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcacatccttgtcggccaGggacaggtccccctccagct	10	16	1	0	rs200284292	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	105410417	G	A	105410417	2	1	35	1	0	0	0	0	0	0	0	1	415	991	35	4		4	AHNAK2	14	105410417	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	40164452	105410417	1939123	38	2558			1	27		3	3	2727	G		1.532595e-05
AHNAK2	113146	mdanderson.org	37	chr14	105410435	105410435	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggacaggtccccctccaGctgtgcactatccagtttgg	11	14	0	0	rs201237638	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	105410435	G	A	105410435	2	1	35	1	0	0	0	0	0	0	0	1	415	962	34	4		4	AHNAK2	14	105410435	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	18	105410435	1939105	39	2559			1	27		3	3	2727	G		1.532595e-05
AHNAK2	113146	mdanderson.org	37	chr14	105413143	105413143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgggaacgtggccctctGggagtttcacgtccacctgg	13	14	2	0	rs201434975	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	105413143	G	A	105413143	3	1	35	1	0	0	0	0	1	0	0	0	415	1348	47	4	8746	4	AHNAK2	14	105413143	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	2708	105413143	1936397	40	2560			1	27		3	3	2727	G		1.532595e-05
OR4N4	283694	mdanderson.org	37	chr15	22383138	22383138	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttcctatgcagtcatcctCtgccatgttcgtagggcagc	10	13	2	0	rs145480212	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	22383138	C	G	22383138	2	3	35	1	0	0	0	0	0	0	0	1	11157	900	32	5		5	OR4N4	15	22383138	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10		22383138	80148254	41	2561											
CHTF18	63922	mdanderson.org	37	chr16	840607	840607	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acggtcaagacgcctccagtCactgcctctgggtggatgag	13	12	3	2	rs149274107		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	840607	C	G	840607	3	3	35	1	0	0	0	0	1	0	0	0	3443	826	29	5	861	5	CHTF18	16	840607	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10		840607	89514146	42	2562											
CHTF18	63922	mdanderson.org	37	chr16	845819	845819	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcctggacattcttgcAcccaagctccgccccgtgag	9	17	1	1	rs2294446	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	845819	A	G	845819	2	3	35	1	0	0	0	0	0	0	0	1	3443	146	6	2		2	CHTF18	16	845819	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10	5212	845819	89508934	43	2563											
TAOK2	9344	mdanderson.org	37	chr16	29999225	29999225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctagggccccctgcctcccGccagccactgccagggactc	11	20	0	0	rs11864149	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	29999225	G	A	29999225	3	1	35	1	0	0	0	0	1	0	0	0	15649	1087	38	1	3690	1	TAOK2	16	29999225	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	29153406	29999225	60355528	44	2564											
HSF5	124535	broad.mit.edu	37	chr17	56565433	56565434	+	In_Frame_Ins	INS	-	-	CGGCCC													ggttttgaagagctcgggctINScggccccggcccccgcagtc					novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		CGGCCC	56565434	-	CGGCCC	56565433	7	5	35	1	0	1	1	0	0	0	0	0	7457	1551	54	0	1611	0	HSF5	17	56565433	In_Frame_Ins	INS	-	TCGA-KN-8419-01A-11D-2310-10		56565433	24629777	45	2565											
TEX14	56155	broad.mit.edu;bcgsc.ca	37	chr17	56693673	56693673	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtaagataaaactgaaaCcaaggcatagcctcaaatta	6	9	1	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	56693673	C	T	56693673	4	4	35	1	0	0	0	0	0	1	0	0	15882	522	18	3		3	TEX14	17	56693673	Nonsense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	128240	56693673	24501537	46	2566											
MED13	9969	ucsc.edu;bcgsc.ca	37	chr17	60030379	60030379	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctggagaatgtacaggagAaccagttggagaagcaggaa	14	6	0	3	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	60030379	A	G	60030379	3	3	35	1	0	0	0	0	1	0	0	0	9507	246	9	4	476	4	MED13	17	60030379	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	3336706	60030379	21164831	47	2567											
DSG1	1828	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	28926018	28926018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagagagaatgacaGgatttgaactaacagaggga	16	3	0	5	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	28926018	G	A	28926018	3	1	35	1	0	0	0	0	1	0	0	0	4813	1001	35	4	2011	4	DSG1	18	28926018	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		28926018	49151230	48	2568											
ZCCHC2	54877	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	60242420	60242420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taaatagttactattatcctAatccaatgcctggaccaatg	5	9	0	0	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	60242420	A	T	60242420	3	4	35	1	0	0	0	0	1	0	0	0	17692	362	13	5	3156	5	ZCCHC2	18	60242420	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	31316402	60242420	17834828	49	2569											
MED16	10025	mdanderson.org	37	chr19	871135	871135	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgggctgcaggcggctAaccaggccgtcgctggctgg	17	12	0	0	rs1683569	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	871135	A	G	871135	2	3	35	1	0	0	0	0	0	0	0	1	9511	349	13	4		4	MED16	19	871135	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10		871135	58257848	50	2570											
WDR18	57418	mdanderson.org	37	chr19	984533	984533	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggcgcagctgggcaagaaTtacatcagcgcctgggagct	15	11	1	1	rs2301810	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	984533	T	C	984533	2	2	35	1	0	0	0	0	0	0	0	1	17384	1490	52	4		4	WDR18	19	984533	Silent	SNP	T	TCGA-KN-8419-01A-11D-2310-10	113398	984533	58144450	51	2571											
HMHA1	23526	broad.mit.edu;bcgsc.ca	37	chr19	1073206	1073206	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgggtgaggctctgcgtgtCatgcatcagatcatctccaa	11	11	5	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	1073206	C	A	1073206	2	1	35	1	0	0	0	0	0	0	0	1	7298	813	29	5		5	HMHA1	19	1073206	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	88673	1073206	58055777	52	2572											
PRAM1	84106	mdanderson.org	37	chr19	8564469	8564469	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggggaggtcagtgacctCaggcggcgggggcttcaagg	19	9	3	1	rs4990821	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	8564469	C	G	8564469	3	3	35	1	0	0	0	0	1	0	0	0	12508	835	29	5	1822	5	PRAM1	19	8564469	Missense_Mutation	SNP	C	TCGA-KN-8419-01A-11D-2310-10	7491263	8564469	50564514	53	2573											
MUC16	94025	mdanderson.org	37	chr19	8999449	8999449	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagctcagtgatgctgtGggtcagctggctcagctccc	13	14	3	1	rs76798407	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	8999449	G	T	8999449	3	4	35	1	0	0	0	0	1	0	0	0	10051	1348	47	5	2913	5	MUC16	19	8999449	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10	434980	8999449	50129534	54	2574			2	28		3	3	6157	N	T_G_A	7.781122e-05
MUC16	94025	mdanderson.org	37	chr19	8999478	8999478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcagctcccagtatagcTgctctctgtccagtccaggg	11	14	2	0	rs73493659	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		C	8999478	T	C	8999478	3	2	35	1	0	0	0	0	1	0	0	0	10051	1580	55	2	2942	2	MUC16	19	8999478	Missense_Mutation	SNP	T	TCGA-KN-8419-01A-11D-2310-10	29	8999478	50129505	55	2575			2	28		3	3	6157	N	T_G_A	7.781122e-05
MUC16	94025	mdanderson.org	37	chr19	9005605	9005605	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agggtgtagggtcccagctcAgtgatgctgtgggtcagctg	17	8	2	1	rs74835716		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	9005605	A	T	9005605	2	4	35	1	0	0	0	0	0	0	0	1	10051	175	7	5		5	MUC16	19	9005605	Silent	SNP	A	TCGA-KN-8419-01A-11D-2310-10	6127	9005605	50123378	56	2576			2	28		3	3	6157	N	T_G_A	7.781122e-05
NLRP9	338321	ucsc.edu;bcgsc.ca	37	chr19	56241255	56241255	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcaaagaatcgccagggAgggatcatcaaggctggtat	13	7	2	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		G	56241255	A	G	56241255	3	3	35	1	0	0	0	0	1	0	0	0	10563	304	11	2	1067	2	NLRP9	19	56241255	Missense_Mutation	SNP	A	TCGA-KN-8419-01A-11D-2310-10	47235650	56241255	2887728	57	2577											
ZNF831	128611	mdanderson.org	37	chr20	57767041	57767041	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcggcagcaggcgacggcaGcggagaagccctgggatgcc	18	12	0	1	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	57767041	G	A	57767041	3	1	35	1	0	0	0	0	1	0	0	0	18288	971	34	4	969	4	ZNF831	20	57767041	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		57767041	5258479	58	2578											
KRTAP10-1	386677	mdanderson.org	37	chr21	45959195	45959195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagaggcctcagcaggccGggcgggagcacgcggggcgg	21	12	1	1	rs233316	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	45959195	G	A	45959195	3	1	35	1	0	0	0	0	1	0	0	0	8566	1116	39	1	13	1	KRTAP10-1	21	45959195	Missense_Mutation	SNP	G	TCGA-KN-8419-01A-11D-2310-10		45959195	2170700	59	2579											
PI4KA	5297	mdanderson.org	37	chr22	21088357	21088357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggggcccgatggccgccacGtgccggttcatgctcccctt	13	17	1	0	rs2629363		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	21088357	G	A	21088357	2	1	35	1	0	0	0	0	0	0	0	1	11953	1136	40	1		1	PI4KA	22	21088357	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10		21088357	30216209	60	2580											
OSBP2	23762	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	31266429	31266429	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacagatgactctggggaCgacgacgaggctaccacccc	11	15	1	2	novel		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	31266429	C	T	31266429	2	4	35	1	0	0	0	0	0	0	0	1	11353	535	19	1		1	OSBP2	22	31266429	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	10178072	31266429	20038137	61	2581											
SSTR3	6753	hgsc.bcm.edu	37	chr22	37603327	37603327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accacgggcagcaccaccacGgctgaggccacccacacagc	10	19	0	1	rs141903633	byfrequency	TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	37603327	G	A	37603327	2	1	35	1	0	0	0	0	0	0	0	1	15299	1103	39	1		1	SSTR3	22	37603327	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10	6336898	37603327	13701239	62	2582											
TYMP	1890	mdanderson.org	37	chr22	50965102	50965102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggcccacgcagcgaccCaggggcttgtccatggcggt	16	14	0	0	rs8141558		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		T	50965102	C	T	50965102	2	4	35	1	0	0	0	0	0	0	0	1	16917	581	21	4		4	TYMP	22	50965102	Silent	SNP	C	TCGA-KN-8419-01A-11D-2310-10	13361775	50965102	339464	63	2583											
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-KN-8419-01A-11D-2310-10	TCGA-KN-8419-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a592e80a-3b1a-46aa-be30-bcd87d6bca6f	04adced3-96c5-4ec2-8e06-293544f0c3d7		A	51076024	G	A	51076024	2	1	35	1	0	0	0	0	0	0	0	1	10805	991	35	4		4	NUDT10	23	51076024	Silent	SNP	G	TCGA-KN-8419-01A-11D-2310-10		51076024	104194536	64	2584											
HCRTR1	3061	ucsc.edu	37	chr1	32085198	32085198	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actacttcattgtcaacctgTccctggctgacgttctggtg	9	12	3	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	32085198	T	C	32085198	3	2	36	1	0	0	0	0	1	0	0	0	7059	1667	58	2	271	2	HCRTR1	1	32085198	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10		32085198	217165423	1	2585											
ZC3H12A	80149	ucsc.edu;bcgsc.ca	37	chr1	37947246	37947246	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagaagaagatcctggtgTtcacaccatcacgacgcgtg	11	10	2	4	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	37947246	T	C	37947246	3	2	36	1	0	0	0	0	1	0	0	0	17666	1725	60	2	638	2	ZC3H12A	1	37947246	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	5862048	37947246	211303375	2	2586											
DNASE2B	58511	broad.mit.edu;mdanderson.org	37	chr1	84876612	84876612	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagaaggctatgattatccAcccacagggagacgaaatgg	12	8	0	3	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	84876612	A	T	84876612	2	4	36	1	0	0	0	0	0	0	0	1	4702	146	6	5		5	DNASE2B	1	84876612	Silent	SNP	A	TCGA-KN-8421-01A-11D-2310-10	46929366	84876612	164374009	3	2587											
STX6	10228	hgsc.bcm.edu;ucsc.edu	37	chr1	180945772	180945772	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggatggctatggcacaccaTtggcgccgatctggaaggca	14	10	1	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	180945772	T	C	180945772	2	2	36	1	0	0	0	0	0	0	0	1	15449	1490	52	4		4	STX6	1	180945772	Silent	SNP	T	TCGA-KN-8421-01A-11D-2310-10	96069160	180945772	68304849	4	2588											
PRKD3	23683	broad.mit.edu	37	chr2	37483813	37483813	+	Frame_Shift_Del	DEL	G	G	-													ttttttttttaccttcaccaGaaatttctctccatggattt					novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		-	37483813	G	-	37483813	7	5	36	1	0	1	0	1	0	0	0	0	12609	942	33	0	279	0	PRKD3	2	37483813	Frame_Shift_Del	DEL	G	TCGA-KN-8421-01A-11D-2310-10		37483813	205715560	5	2589											
CCDC85A	114800	broad.mit.edu;mdanderson.org	37	chr2	56420144	56420144	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcctgtggaaccccagatcGccccaaagcactcaaaggac	9	15	1	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	56420144	G	A	56420144	3	1	36	1	0	0	0	0	1	0	0	0	2886	1087	38	1	815	1	CCDC85A	2	56420144	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	18936331	56420144	186779229	6	2590											
RAB11FIP5	26056	mdanderson.org	37	chr2	73316240	73316240	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctatggcgctgcttgggAggatggcagaggcagattcc	15	10	1	2	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		G	73316240	A	G	73316240	3	3	36	1	0	0	0	0	1	0	0	0	12989	304	11	2	1342	2	RAB11FIP5	2	73316240	Missense_Mutation	SNP	A	TCGA-KN-8421-01A-11D-2310-10	16896096	73316240	169883133	7	2591											
R3HDM1	23518	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	136473266	136473266	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttttgtccccgggcaaggTaagtgcacatgaaactagtc	10	11	0	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	136473266	T	A	136473266	5	1	36	1	0	0	0	0	0	0	1	0	12979	1652	57	5	2860	5	R3HDM1	2	136473266	Splice_Site	SNP	T	TCGA-KN-8421-01A-11D-2310-10	63157026	136473266	106726107	8	2592											
PRPF40A	55660	hgsc.bcm.edu;ucsc.edu	37	chr2	153573942	153573942	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctccgccggcggccactGccgctacacataccaacaag	9	18	0	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	153573942	G	A	153573942	2	1	36	1	0	0	0	0	0	0	0	1	12660	1306	46	4		4	PRPF40A	2	153573942	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	17100676	153573942	89625431	9	2593											
SCN3A	6328	broad.mit.edu;mdanderson.org	37	chr2	165987817	165987817	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaccaagctccattaaactGaggctgacaataattccatc	6	11	0	3	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	165987817	G	T	165987817	2	4	36	1	0	0	0	0	0	0	0	1	14015	1277	45	5		5	SCN3A	2	165987817	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	12413875	165987817	77211556	10	2594											
FASTKD1	79675	bcgsc.ca	37	chr2	170393737	170393737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taacctacccaataacttacCtactttgtggtaataaggcg	6	10	0	0	rs139576803		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	170393737	C	T	170393737	3	4	36	1	0	0	0	0	1	0	0	0	5734	695	24	4	371	4	FASTKD1	2	170393737	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	4405920	170393737	72805636	11	2595											
TTN	7273	broad.mit.edu	37	chr2	179401232	179401232	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccatcactggcaggtggCttccaggccacaacacaaga	9	15	1	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	179401232	C	T	179401232	2	4	36	1	0	0	0	0	0	0	0	1	16841	796	28	4		4	TTN	2	179401232	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	9007495	179401232	63798141	12	2596											
WDR52	55779	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	113114596	113114596	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaaataataatgacttaCatgagacatgggagaccaca	8	7	0	4	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	113114596	C	T	113114596	5	4	36	1	0	0	0	0	0	0	1	0	17410	492	17	4	3772	4	WDR52	3	113114596	Splice_Site	SNP	C	TCGA-KN-8421-01A-11D-2310-10		113114596	84907834	13	2597											
MUC4	4585	mdanderson.org	37	chr3	195505945	195505945	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgccgtgacctgtggacActgaggaagcgtcggtgaca	17	9	0	3	rs200786826		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		G	195505945	A	G	195505945	3	3	36	1	0	0	0	0	1	0	0	0	10056	159	6	2		2	MUC4	3	195505945	Missense_Mutation	SNP	A	TCGA-KN-8421-01A-11D-2310-10	82391349	195505945	2516485	14	2598			1	29		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	mdanderson.org	37	chr3	195507049	195507049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcctgacctgtggatGctgaggaagtgtcggtgaca	18	7	0	3	rs76834296		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	195507049	G	A	195507049	3	1	36	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195507049	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	1104	195507049	2515381	15	2599			1	29		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	mdanderson.org	37	chr3	195509093	195509093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcggtgacaggaagagGggtggtgtgacctgtggatg	20	4	0	3	rs77902873		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	195509093	G	A	195509093	3	1	36	1	0	0	0	0	1	0	0	0	10056	1232	43	3		3	MUC4	3	195509093	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	2044	195509093	2513337	16	2600			1	29		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	mdanderson.org	37	chr3	195509108	195509108	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaggggtggtgtgacctgTggatgctgaggaagggctag	20	4	0	3	rs200863118		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	195509108	T	A	195509108	3	1	36	1	0	0	0	0	1	0	0	0	10056	1696	59	5		5	MUC4	3	195509108	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	15	195509108	2513322	17	2601			1	29		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	bcgsc.ca	37	chr3	195514379	195514379	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgacatgaagaggggtggTgtgacctgtggatactgagg	18	4	0	5	rs79461778		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	195514379	T	C	195514379	3	2	36	1	0	0	0	0	1	0	0	0	10056	1696	59	2		2	MUC4	3	195514379	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	5271	195514379	2508051	18	2602			1	29		6	6	8459	N	T_G_C_A	8.93914e-12
MUC4	4585	bcgsc.ca	37	chr3	195514403	195514403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaagCgtcggtgacaggaagagggg	18	6	0	3	rs79754259		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	195514403	C	T	195514403	3	4	36	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195514403	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	24	195514403	2508027	19	2603			1	29		6	6	8459	N	T_G_C_A	8.93914e-12
TLR1	7096	hgsc.bcm.edu	37	chr4	38798159	38798159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttagcccaaaaaaggccaCgtttgctcttttccttgggc	9	11	1	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	38798159	C	T	38798159	3	4	36	1	0	0	0	0	1	0	0	0	16053	536	19	1	70	1	TLR1	4	38798159	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		38798159	152356117	20	2604											
DSPP	1834	mdanderson.org	37	chr4	88537088	88537088	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatagcagtgacagcagcAatagcagtgacagcagcgat	13	8	0	3	rs201754564		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		G	88537088	A	G	88537088	3	3	36	1	0	0	0	0	1	0	0	0	4819	130	5	4	3288	4	DSPP	4	88537088	Missense_Mutation	SNP	A	TCGA-KN-8421-01A-11D-2310-10	49738929	88537088	102617188	21	2605											
POMZP3	22932	mdanderson.org	37	chr7	76255328	76255328	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatactcacatcgcagaacgCgaaaatcttctgtcaggagg	9	10	4	1	rs199608185		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	76255328	C	T	76255328	2	4	36	1	0	0	0	0	0	0	0	1	12327	755	27	1		1	POMZP3	7	76255328	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10		76255328	82883335	22	2606											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	82579951	82579951	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccagaagggtcatagttaTactggtagatctgccgaatc	10	8	2	2	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	82579951	T	C	82579951	3	2	36	1	0	0	0	0	1	0	0	0	11662	1406	49	4	5572	4	PCLO	7	82579951	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	6324623	82579951	76558712	23	2607											
FAM86B1	85002	mdanderson.org	37	chr8	12044010	12044010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cattgagaaggacattccctCggagctgctcgaggacccgg	13	12	0	1	rs201876260	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	12044010	C	T	12044010	3	4	36	1	0	0	0	0	1	0	0	0	5693	884	31	1	411	1	FAM86B1	8	12044010	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		12044010	134320012	24	2608											
MYC	4609	broad.mit.edu	37	chr8	128752827	128752827	+	Frame_Shift_Del	DEL	A	A	-													actacgcagcgcctccctccActcggaaggactatcctgct					novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		-	128752827	A	-	128752827	7	5	36	1	0	1	0	1	0	0	0	0	10094	159	6	0	998	0	MYC	8	128752827	Frame_Shift_Del	DEL	A	TCGA-KN-8421-01A-11D-2310-10	116708817	128752827	17611195	25	2609											
ARC	23237	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr8	143694490	143694490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggactcgctgttgggggcGggcgtgagggtctccgcctc	18	12	1	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	143694490	G	A	143694490	2	1	36	1	0	0	0	0	0	0	0	1	843	1103	39	1		1	ARC	8	143694490	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	14941663	143694490	2669532	26	2610											
PLEC	5339	mdanderson.org	37	chr8	144996111	144996111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgcatcccggccattgggCagggtctttgtggcagccac	14	12	1	0	rs34803322	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	144996111	C	T	144996111	2	4	36	1	0	0	0	0	0	0	0	1	12132	697	25	4		4	PLEC	8	144996111	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	1301621	144996111	1367911	27	2611											
PTPRD	5789	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	8521528	8521528	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tagtgggtgggatagagaatCttggtgggacacggcgaact	17	5	1	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		G	8521528	C	G	8521528	3	3	36	1	0	0	0	0	1	0	0	0	12891	913	32	5	5204	5	PTPRD	9	8521528	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		8521528	132691903	28	2612											
PRSS3	5646	mdanderson.org	37	chr9	33798016	33798016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccatctctctgcccacCacccctccagctgctggcac	5	22	2	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	33798016	C	T	33798016	2	4	36	1	0	0	0	0	0	0	0	1	12711	581	21	4		4	PRSS3	9	33798016	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	25276488	33798016	107415415	29	2613											
FAM120AOS	158293	mdanderson.org	37	chr9	96214928	96214928	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gacacttgagggctgggagaGagccccggaccagaattcgg	16	10	0	3	rs1055710	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	96214928	G	A	96214928	3	1	36	1	0	0	0	0	1	0	0	0	5459	942	33	4	718	4	FAM120AOS	9	96214928	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	62416912	96214928	44998503	30	2614											
MUC6	4588	mdanderson.org	37	chr11	1017684	1017684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtagaagttgaggtgGcttcagcatggtgtgtggag	19	3	1	2	rs112886536	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	1017684	G	A	1017684	3	1	36	1	0	0	0	0	1	0	0	0	10058	1203	42	3	2214	3	MUC6	11	1017684	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10		1017684	133988832	31	2615											
MUC2	4583	mdanderson.org	37	chr11	1093575	1093575	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccatcaccaccacaactacGgtgaccgcaaccccaacacc	4	21	1	1	rs201450769	alternate_allele	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	1093575	G	T	1093575	2	4	36	1	0	0	0	0	0	0	0	1	10053	1103	39	5		5	MUC2	11	1093575	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	75891	1093575	133912941	32	2616											
OR9G1	390174	mdanderson.org	37	chr11	56468440	56468440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcctgtggcgagaagggcGgctataaaattatgatgtac	14	6	0	2	rs12421330	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	56468440	G	T	56468440	3	4	36	1	0	0	0	0	1	0	0	0	11329	1116	39	5	579	5	OR9G1	11	56468440	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	55374865	56468440	78538076	33	2617											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	64664265	64664265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacgcctcccagcaggcCgggcagctggttcttgcgga	14	16	1	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	64664265	C	T	64664265	3	4	36	1	0	0	0	0	1	0	0	0	1097	652	23	1	605	1	ATG2A	11	64664265	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	8195825	64664265	70342251	34	2618											
KRTAP5-10	387273	mdanderson.org	37	chr11	71276702	71276702	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggctccggctgtgggggCtgtggctccggctgtggggg	22	9	0	0	rs113977776		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	71276702	C	T	71276702	2	4	36	1	0	0	0	0	0	0	0	1	8621	784	28	4		4	KRTAP5-10	11	71276702	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	6612437	71276702	63729814	35	2619											
DLG2	1740	mdanderson.org	37	chr11	84245725	84245725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcttacttcgtgggttagtCgaggtaaggaatgatcatgt	12	6	2	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	84245725	C	T	84245725	3	4	36	1	0	0	0	0	1	0	0	0	4592	884	31	1	2767	1	DLG2	11	84245725	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	12969023	84245725	50760791	36	2620											
OR10G4	390264	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr11	123886665	123886665	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacttggccatcagttacccGctcaggtacaccagcatgat	8	13	2	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	123886665	G	A	123886665	2	1	36	1	0	0	0	0	0	0	0	1	10980	1074	38	1		1	OR10G4	11	123886665	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	39640940	123886665	11119851	37	2621											
PRB2	653247	mdanderson.org	37	chr12	11546006	11546006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtgggggaccttgagGtttgttgcctccttgtgggg	19	6	0	1	rs74718516		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	11546006	G	A	11546006	3	1	36	1	0	0	0	0	1	0	0	0	12532	1261	44	3	248	3	PRB2	12	11546006	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10		11546006	122305889	38	2622											
GALNT6	11226	broad.mit.edu	37	chr12	51757967	51757967	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaggaagtgtttcccagccGaaggtcaggctccagtcaaa	13	10	2	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	51757967	G	A	51757967	2	1	36	1	0	0	0	0	0	0	0	1	6271	1049	37	1		1	GALNT6	12	51757967	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10	40211961	51757967	82093928	39	2623											
KBTBD6	89890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	41704863	41704863	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aatgtggtacctatattaatCcattggtctcccctaatatc	5	10	1	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	41704863	C	A	41704863	3	1	36	1	0	0	0	0	1	0	0	0	8058	856	30	5	243	5	KBTBD6	13	41704863	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		41704863	73465015	40	2624											
POTEG	404785	mdanderson.org	37	chr14	19558994	19558994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtaatactgacaggccGtacaatgccgggaagatgaa	13	7	0	3	rs4497955	bycluster;by2hit2allele	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	19558994	G	A	19558994	3	1	36	1	0	0	0	0	1	0	0	0	12346	1145	40	1	650	1	POTEG	14	19558994	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10		19558994	87790546	41	2625											
OR4N2	390429	broad.mit.edu	37	chr14	20296067	20296067	+	Frame_Shift_Del	DEL	G	G	-													ctctgtggcttgggggttttGtccactccattatccaggtg					novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		-	20296067	G	-	20296067	7	5	36	1	0	1	0	1	0	0	0	0	11156	1377	48	0	462	0	OR4N2	14	20296067	Frame_Shift_Del	DEL	G	TCGA-KN-8421-01A-11D-2310-10	737073	20296067	87053473	42	2626											
RFX7	64864	ucsc.edu	37	chr15	56388708	56388708	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggagtctttggtgcctgTttcacagactgcatgtgctg	14	8	2	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	56388708	T	C	56388708	2	2	36	1	0	0	0	0	0	0	0	1	13360	1722	60	2		2	RFX7	15	56388708	Silent	SNP	T	TCGA-KN-8421-01A-11D-2310-10		56388708	46142684	43	2627											
ELMO3	79767	ucsc.edu	37	chr16	67233116	67233116	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgagtgcgggacaccgaggTcaggtctcggaaagggagga	19	8	2	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	67233116	T	C	67233116	3	2	36	1	0	0	0	0	1	0	0	0	5106	1667	58	2	48	2	ELMO3	16	67233116	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10		67233116	23121637	44	2628											
KIAA0753	9851	hgsc.bcm.edu	37	chr17	6510586	6510586	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtttcagcatcaagccaagCgagcctagcagacagtcaaa	9	11	3	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	6510586	C	T	6510586	3	4	36	1	0	0	0	0	1	0	0	0	8252	768	27	1	1105	1	KIAA0753	17	6510586	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		6510586	74684624	45	2629											
BCAS3	54828	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	59118255	59118255	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagttcctgcttgctggccgTaagtagttcagatttttttt	9	8	1	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		G	59118255	T	G	59118255	5	3	36	1	0	0	0	0	0	0	1	0	1356	1652	57	5	2150	5	BCAS3	17	59118255	Splice_Site	SNP	T	TCGA-KN-8421-01A-11D-2310-10	52607669	59118255	22076955	46	2630											
XAB2	56949	mdanderson.org	37	chr19	7694393	7694393	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccggccgctcgggccgcgaGagtcgcgccatcaccaccat	12	18	1	1	rs4134809	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	7694393	G	A	7694393	2	1	36	1	0	0	0	0	0	0	0	1	17524	929	33	4		4	XAB2	19	7694393	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10		7694393	51434590	47	2631											
VSTM1	284415	hgsc.bcm.edu;mdanderson.org	37	chr19	54561798	54561798	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcacattgctctcggcttcAaccaccgagctgggccaggc	11	15	3	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	54561798	A	T	54561798	2	4	36	1	0	0	0	0	0	0	0	1	17334	117	5	5		5	VSTM1	19	54561798	Silent	SNP	A	TCGA-KN-8421-01A-11D-2310-10	46867405	54561798	4567185	48	2632											
NLRP7	199713	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	55447692	55447692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcatcagcatcatcgtgCgttcccactcgatgtgccct	8	15	2	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	55447692	C	T	55447692	3	4	36	1	0	0	0	0	1	0	0	0	10561	768	27	1	900	1	NLRP7	19	55447692	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	885894	55447692	3681291	49	2633											
SNRPB2	6629	mdanderson.org;bcgsc.ca	37	chr20	16717906	16717906	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaaataattaaaacagCgaatacagtatgcaaaaaca	4	6	1	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	16717906	C	T	16717906	4	4	36	1	0	0	0	0	0	1	0	0	14960	782	27	1	248	1	SNRPB2	20	16717906	Nonsense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10		16717906	46307614	50	2634											
WFDC5	149708	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	43739299	43739299	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaccctggggacacactggCggaagcaagctctgtagcag	14	11	1	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	43739299	C	T	43739299	3	4	36	1	0	0	0	0	1	0	0	0	17460	768	27	1	180	1	WFDC5	20	43739299	Missense_Mutation	SNP	C	TCGA-KN-8421-01A-11D-2310-10	27021393	43739299	19286221	51	2635											
TMPRSS15	5651	broad.mit.edu;mdanderson.org	37	chr21	19744529	19744529	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacacattttattgtcttcGtcagaaccatctggacagtt	6	11	3	1	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	19744529	G	A	19744529	2	1	36	1	0	0	0	0	0	0	0	1	16350	1136	40	1		1	TMPRSS15	21	19744529	Silent	SNP	G	TCGA-KN-8421-01A-11D-2310-10		19744529	28385366	52	2636											
B3GALT5	10317	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr21	41033159	41033159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctacgtgttttctggcgacGtggcgagtcaggtgtacaat	14	8	2	0	rs144752439		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	41033159	G	A	41033159	3	1	36	1	0	0	0	0	1	0	0	0	1254	1145	40	1	675	1	B3GALT5	21	41033159	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	21288630	41033159	7096736	53	2637											
KRTAP10-2	386679	mdanderson.org	37	chr21	45971081	45971081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggaggtgcagcaagcCggctggcagctagactgctg	19	9	0	1	rs79593866		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	45971081	C	T	45971081	2	4	36	1	0	0	0	0	0	0	0	1	8570	639	23	1		1	KRTAP10-2	21	45971081	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	4937922	45971081	2158814	54	2638											
GAS2L1	10634	ucsc.edu;mdanderson.org	37	chr22	29704662	29704662	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gacaccactgaaaccgccccCgcaccagggactcctgcccg	9	20	0	1	rs56037813		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		G	29704662	C	G	29704662	2	3	36	1	0	0	0	0	0	0	0	1	6300	639	23	5		5	GAS2L1	22	29704662	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10		29704662	21599904	55	2639											
ELFN2	114794	bcgsc.ca	37	chr22	37770611	37770611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtactgcacgaggatgtacaTcttgctgtaggggtgtggga	16	6	1	0	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		C	37770611	T	C	37770611	3	2	36	1	0	0	0	0	1	0	0	0	5097	1435	50	4	1502	4	ELFN2	22	37770611	Missense_Mutation	SNP	T	TCGA-KN-8421-01A-11D-2310-10	8065949	37770611	13533955	56	2640											
ZRSR2	8233	mdanderson.org	37	chrX	15838366	15838366	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccctttctctgtttaaCggacgatggtatgcaggacg	12	10	1	0	rs2301724	byfrequency	TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	15838366	C	T	15838366	2	4	36	1	0	0	0	0	0	0	0	1	18328	535	19	1		1	ZRSR2	23	15838366	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10		15838366	139432194	57	2641											
NKAP	79576	broad.mit.edu	37	chrX	119072773	119072773	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctctctctcacttaatctCctagcagataaagacatgta	4	12	4	2	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		T	119072773	C	T	119072773	2	4	36	1	0	0	0	0	0	0	0	1	10518	869	30	3		3	NKAP	23	119072773	Silent	SNP	C	TCGA-KN-8421-01A-11D-2310-10	103234407	119072773	36197787	58	2642											
ZBTB33	10009	broad.mit.edu	37	chrX	119389135	119389135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggtataaggttgacactgGaaaagaacctccagtaggga	13	6	0	2	novel		TCGA-KN-8421-01A-11D-2310-10	TCGA-KN-8421-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ba686386-8113-4885-b20f-6ad09a295604	9d5ee3f8-490f-4865-bb90-fe0a1bbf3643		A	119389135	G	A	119389135	3	1	36	1	0	0	0	0	1	0	0	0	17641	1174	41	3	1867	3	ZBTB33	23	119389135	Missense_Mutation	SNP	G	TCGA-KN-8421-01A-11D-2310-10	316362	119389135	35881425	59	2643											
PRAMEF1	65121	mdanderson.org	37	chr1	12854401	12854401	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tatacctgaatagtattcaaGagctggaaattcgcaacatg	8	7	1	2	rs78584260	alternate_allele	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	12854401	G	T	12854401	4	4	37	1	0	0	0	0	0	1	0	0	12510	943	33	5	631	5	PRAMEF1	1	12854401	Nonsense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10		12854401	236396220	1	2644											
PRAMEF4	400735	mdanderson.org	37	chr1	12939548	12939548	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagcaccataactctcccgGggggcaggatacagctccac	10	15	2	0	rs77695621	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	12939548	G	C	12939548	2	2	37	1	0	0	0	0	0	0	0	1	12525	1219	43	5		5	PRAMEF4	1	12939548	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	85147	12939548	236311073	2	2645											
CPT2	1376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	53676357	53676357	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccattaaggaccttgtccaCttgtcccacaatatgctgca	6	14	0	0	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	53676357	C	G	53676357	3	3	37	1	0	0	0	0	1	0	0	0	3863	564	20	5	1025	5	CPT2	1	53676357	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	40736809	53676357	195574264	3	2646											
RBMXL1	494115	mdanderson.org	37	chr1	89448841	89448841	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacgagaacttgggtaatcTctgcttgaatagctgtcttt	9	8	3	2	rs150045246		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	89448841	T	C	89448841	2	2	37	1	0	0	0	0	0	0	0	1	13245	1548	54	2		2	RBMXL1	1	89448841	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	35772484	89448841	159801780	4	2647			1	30		2	2	28	N	T_A	6.105108e-05
RBMXL1	494115	mdanderson.org	37	chr1	89448868	89448868	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaatagctgtctttagtagaAtacccatcatctcttgggga	9	8	3	1	rs200907077		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	89448868	A	T	89448868	4	4	37	1	0	0	0	0	0	1	0	0	13245	108	4	5	534	5	RBMXL1	1	89448868	Nonsense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	27	89448868	159801753	5	2648			1	30		2	2	28	N	T_A	6.105108e-05
RPRD2	23248	broad.mit.edu	37	chr1	150432553	150432553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcgaggacaggaaggaaAaacctgcagagaagtcagct	13	8	1	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	150432553	A	G	150432553	3	3	37	1	0	0	0	0	1	0	0	0	13712	15	1	4	1205	4	RPRD2	1	150432553	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	60983685	150432553	98818068	6	2649											
FLG	2312	mdanderson.org	37	chr1	152276282	152276282	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaccggccacgtgtggactCttggtggctctgctgatggg	16	10	2	2	rs76133835	bycluster	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	152276282	C	G	152276282	3	3	37	1	0	0	0	0	1	0	0	0	5971	922	32	5	1109	5	FLG	1	152276282	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	1843729	152276282	96974339	7	2650											
PEAR1	375033	broad.mit.edu	37	chr1	156877478	156877478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgccaaaatggaggtgtcTtccaaaccccacagggctcc	9	14	1	0	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	156877478	T	C	156877478	3	2	37	1	0	0	0	0	1	0	0	0	11791	1609	56	2	743	2	PEAR1	1	156877478	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	4601196	156877478	92373143	8	2651											
OR10Z1	128368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	158576392	158576392	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	catcaggctggatagccatcTgcacacccccatgtacctct	7	16	3	0	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	158576392	T	A	158576392	3	1	37	1	0	0	0	0	1	0	0	0	11002	1580	55	5	166	5	OR10Z1	1	158576392	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	1698914	158576392	90674229	9	2652											
ACBD3	64746	broad.mit.edu;hgsc.bcm.edu	37	chr1	226349254	226349255	+	In_Frame_Ins	INS	-	-	TTC													tgctgctccaaccgaagcctINSttcttcttctatccgtctcc					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		TTC	226349255	-	TTC	226349254	7	5	37	1	0	1	1	0	0	0	0	0	123	1608	56	0	900	0	ACBD3	1	226349254	In_Frame_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10	67772862	226349254	22901367	10	2653	73	2									
ACBD3	64746	bcgsc.ca	37	chr1	226349255	226349256	+	In_Frame_Ins	INS	-	-	TTC													gctgctccaaccgaagccttINStcttcttctatccgtctcct					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		TTC	226349256	-	TTC	226349255	7	5	37	1	0	1	1	0	0	0	0	0	123	1838	64	0	901	0	ACBD3	1	226349255	In_Frame_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10	1	226349255	22901366	11	2654	73	2									
MARCO	8685	hgsc.bcm.edu	37	chr2	119750740	119750740	+	Frame_Shift_Del	DEL	C	C	-													aggattgtcggcagtagtaaCcgaggccgggctgaagttta					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		-	119750740	C	-	119750740	7	5	37	1	0	1	0	1	0	0	0	0	9388	506	18	0	1355	0	MARCO	2	119750740	Frame_Shift_Del	DEL	C	TCGA-KN-8422-01A-11D-2310-10		119750740	123448633	12	2655	74	2									
MARCO	8685	bcgsc.ca	37	chr2	119750741	119750741	+	Frame_Shift_Del	DEL	C	C	-													ggattgtcggcagtagtaacCgaggccgggctgaagtttac					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		-	119750741	C	-	119750741	7	5	37	1	0	1	0	1	0	0	0	0	9388	644	23	0	1356	0	MARCO	2	119750741	Frame_Shift_Del	DEL	C	TCGA-KN-8422-01A-11D-2310-10	1	119750741	123448632	13	2656	74	2									
MFSD6	54842	broad.mit.edu	37	chr2	191364759	191364759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggggaccaatgagaataggGaaaattctcctgctggtaga	13	6	1	2	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	191364759	G	A	191364759	3	1	37	1	0	0	0	0	1	0	0	0	9612	1175	41	3	2213	3	MFSD6	2	191364759	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	71614018	191364759	51834614	14	2657											
BHLHE40	8553	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	5025274	5025274	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcccttgctcatgccccAgagactcccttctcccttgc	7	19	2	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	5025274	A	C	5025274	3	2	37	1	0	0	0	0	1	0	0	0	1428	188	7	5	1154	5	BHLHE40	3	5025274	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		5025274	192997156	15	2658											
CLASP2	23122	ucsc.edu;mdanderson.org	37	chr3	33586217	33586217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattgccagtgtttcgaagGtgattatgaagaagcttggt	12	6	0	3	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	33586217	G	A	33586217	2	1	37	1	0	0	0	0	0	0	0	1	3484	1252	44	3		3	CLASP2	3	33586217	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	28560943	33586217	164436213	16	2659											
KBTBD5	131377	hgsc.bcm.edu	37	chr3	42730128	42730128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatggggtgaatcggaccCgctgccttacgtggtgtatg	14	9	0	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	42730128	C	T	42730128	3	4	37	1	0	0	0	0	1	0	0	0	8057	652	23	1	1350	1	KBTBD5	3	42730128	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	9143911	42730128	155292302	17	2660											
C3orf38	285237	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	88205252	88205252	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtcattggttctttggacttCttaattctcagaatcctttt	6	8	4	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	88205252	C	A	88205252	3	1	37	1	0	0	0	0	1	0	0	0	2248	913	32	5	467	5	C3orf38	3	88205252	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	45475124	88205252	109817178	18	2661											
MUC4	4585	mdanderson.org	37	chr3	195509331	195509331	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtcggtgacaggaagCggggtggcgtgaccggtgga	21	6	0	2	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	195509331	C	A	195509331	2	1	37	1	0	0	0	0	0	0	0	1	10056	755	27	5		5	MUC4	3	195509331	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	107304079	195509331	2513099	19	2662											
MUC4	4585	mdanderson.org	37	chr3	195512445	195512445	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actgaggaagtgtcggtgacCggaagaggggtggcatgacc	18	7	0	4	rs200972857	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	195512445	C	A	195512445	2	1	37	1	0	0	0	0	0	0	0	1	10056	639	23	5		5	MUC4	3	195512445	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	3114	195512445	2509985	20	2663											
SDAD1	55153	broad.mit.edu	37	chr4	76896979	76896979	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctatctcttaacatggtgtAcatgaaattttgcaatacct	6	8	1	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	76896979	A	G	76896979	3	3	37	1	0	0	0	0	1	0	0	0	14047	391	14	2	1635	2	SDAD1	4	76896979	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		76896979	114257297	21	2664											
AGPAT9	84803	mdanderson.org	37	chr4	84502873	84502873	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcctcagaggagctagtgTcatggaatctcctcacaaga	9	10	4	2	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	84502873	T	C	84502873	3	2	37	1	0	0	0	0	1	0	0	0	392	1667	58	2	377	2	AGPAT9	4	84502873	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	7605894	84502873	106651403	22	2665											
NDST4	64579	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	115767025	115767025	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggtcaatgaggatggtgAtgatcttggctttggggaca	17	4	2	3	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	115767025	A	T	115767025	3	4	37	1	0	0	0	0	1	0	0	0	10337	333	12	5	569	5	NDST4	4	115767025	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	31264152	115767025	75387251	23	2666											
ABCE1	6059	broad.mit.edu	37	chr4	146041093	146041093	+	Frame_Shift_Del	DEL	T	T	-													cttcccaacaggcataaacaTttttttggatggctatgttc					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		-	146041093	T	-	146041093	7	5	37	1	0	1	0	1	0	0	0	0	64	1493	52	0	970	0	ABCE1	4	146041093	Frame_Shift_Del	DEL	T	TCGA-KN-8422-01A-11D-2310-10	30274068	146041093	45113183	24	2667											
ADAM29	11086	mdanderson.org	37	chr4	175899075	175899076	+	Silent	DNP	CA	CA	TG													ccagagtcaacctcctgtgaCaccctcccagaggcaacctc					rs61744599	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		TG	175899076	CA	TG	175899075	2	4	37	1	0	0	0	0	0	0	0	1	247	478	17	4		4	ADAM29	4	175899075	Silent	DNP	CA	TCGA-KN-8422-01A-11D-2310-10	29857982	175899075	15255201	25	2668											
PRDM9	56979	mdanderson.org	37	chr5	23527323	23527323	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcagtcagtcctcctcaCtcaccagaggacacacacag	8	16	3	1	rs200539936	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	23527323	C	G	23527323	3	3	37	1	0	0	0	0	1	0	0	0	12552	565	20	5	2164	5	PRDM9	5	23527323	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		23527323	157387937	26	2669											
CDC23	8697	broad.mit.edu	37	chr5	137524673	137524673	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagagtagccaactatggCgtgacagaagacaagttgag	13	6	0	5	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	137524673	C	T	137524673	2	4	37	1	0	0	0	0	0	0	0	1	3090	755	27	1		1	CDC23	5	137524673	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	113997350	137524673	43390587	27	2670											
FAM184A	79632	ucsc.edu	37	chr6	119332586	119332586	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttatctttgttatgttgtTcttccaaatccttagaaaaa	5	6	2	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	119332586	T	C	119332586	3	2	37	1	0	0	0	0	1	0	0	0	5555	1783	62	4	1933	4	FAM184A	6	119332586	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		119332586	51782481	28	2671											
COL28A1	340267	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	7477054	7477054	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtggtccaggaattgatgTtccaggcattccaaaagggc	13	8	0	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	7477054	T	C	7477054	3	2	37	1	0	0	0	0	1	0	0	0	3715	1725	60	2	1671	2	COL28A1	7	7477054	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		7477054	151661609	29	2672											
DOCK5	80005	broad.mit.edu	37	chr8	25203089	25203089	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaggcaagctcgcagcttCtgagcaacatcctggaggtg	13	11	1	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	25203089	C	T	25203089	2	4	37	1	0	0	0	0	0	0	0	1	4727	912	32	4		4	DOCK5	8	25203089	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10		25203089	121160933	30	2673											
CNGB3	54714	bcgsc.ca	37	chr8	87660049	87660049	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttaacatcctatttgctcTaaacattggattaaacccaa	3	10	1	0	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	87660049	T	C	87660049	3	2	37	1	0	0	0	0	1	0	0	0	3630	1530	53	2	1503	2	CNGB3	8	87660049	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	62456960	87660049	58703973	31	2674											
ORM1	5004	broad.mit.edu	37	chr9	117088629	117088629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaggaaacaggaggaggggGaatcctagcaggacacagcc	16	8	0	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	117088629	G	A	117088629	3	1	37	1	0	0	0	0	1	0	0	0	11346	1175	41	3	620	3	ORM1	9	117088629	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10		117088629	24124802	32	2675											
TFAM	7019	ucsc.edu	37	chr10	60148464	60148464	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatagggcggagtggcaggTatataaagaagagataagca	14	3	0	2	rs77418790		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	60148464	T	G	60148464	3	3	37	1	0	0	0	0	1	0	0	0	15890	1638	57	5	340	5	TFAM	10	60148464	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		60148464	75386283	33	2676											
TYSND1	219743	mdanderson.org	37	chr10	71905695	71905695	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagaccagcaatggcgcAcccttgggcacggccccgag	13	17	0	1	rs10999158		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	71905695	A	G	71905695	2	3	37	1	0	0	0	0	0	0	0	1	16923	146	6	2		2	TYSND1	10	71905695	Silent	SNP	A	TCGA-KN-8422-01A-11D-2310-10	11757231	71905695	63629052	34	2677											
TBC1D12	23232	ucsc.edu	37	chr10	96163181	96163181	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcttttctgacattcacTtcaactctcgcaacacgttc	6	13	4	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	96163181	T	C	96163181	3	2	37	1	0	0	0	0	1	0	0	0	15702	1609	56	2	813	2	TBC1D12	10	96163181	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	24257486	96163181	39371566	35	2678											
MUC6	4588	mdanderson.org	37	chr11	1017530	1017530	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgaggtgacttcaggatgGtgtgtggaggaagtgtgtga	19	2	1	3	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	1017530	G	A	1017530	2	1	37	1	0	0	0	0	0	0	0	1	10058	1252	44	3		3	MUC6	11	1017530	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10		1017530	133988986	36	2679											
MUC6	4588	mdanderson.org	37	chr11	1018394	1018394	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggaggcagatgtggccatCtgtgcgtgggtaggggtgat	19	5	1	2	rs111444881		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	1018394	C	T	1018394	2	4	37	1	0	0	0	0	0	0	0	1	10058	912	32	4		4	MUC6	11	1018394	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	864	1018394	133988122	37	2680											
EML3	256364	mdanderson.org	37	chr11	62378660	62378660	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccttcagattgggtcccGctaggctcttcgctggcccc	10	17	2	1	rs12808829	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	62378660	G	A	62378660	2	1	37	1	0	0	0	0	0	0	0	1	5137	1078	38	1		1	EML3	11	62378660	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	61360266	62378660	72627856	38	2681											
EFEMP2	30008	ucsc.edu	37	chr11	65635766	65635766	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcatcgaattgactcacTtctcagagacctggatgtag	10	10	2	2	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	65635766	T	C	65635766	3	2	37	1	0	0	0	0	1	0	0	0	4979	1623	56	2	369	2	EFEMP2	11	65635766	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	3257106	65635766	69370750	39	2682											
PPFIA1	8500	ucsc.edu	37	chr11	70178163	70178163	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagacgctcccggaggtggAggcggagctggcccagaggg	20	10	0	2	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	70178163	A	G	70178163	3	3	37	1	0	0	0	0	1	0	0	0	12389	304	11	2	1205	2	PPFIA1	11	70178163	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	4542397	70178163	64828353	40	2683											
FOLH1B	219595	broad.mit.edu;mdanderson.org	37	chr11	89421805	89421805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtgttcttccaacgacttgGaattgcttcaggcagagcac	11	10	2	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	89421805	G	C	89421805	3	2	37	1	0	0	0	0	1	0	0	0	6029	1174	41	5	692	5	FOLH1B	11	89421805	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	19243642	89421805	45584711	41	2684											
PGR	5241	broad.mit.edu	37	chr11	100999089	100999089	+	Frame_Shift_Del	DEL	T	T	-													ccagagcccgaggtttgcccTtcagaagcggacccgcagac					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		-	100999089	T	-	100999089	7	5	37	1	0	1	0	1	0	0	0	0	11885	1609	56	0	2120	0	PGR	11	100999089	Frame_Shift_Del	DEL	T	TCGA-KN-8422-01A-11D-2310-10	11577284	100999089	34007427	42	2685											
CEP164	22897	hgsc.bcm.edu;mdanderson.org	37	chr11	117214946	117214946	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccagaactgatgtggctGgcgcgagagggcatcgtggc	17	9	0	3	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	117214946	G	T	117214946	2	4	37	1	0	0	0	0	0	0	0	1	3278	1335	47	5		5	CEP164	11	117214946	Silent	SNP	G	TCGA-KN-8422-01A-11D-2310-10	16215857	117214946	17791570	43	2686											
TAS2R31	259290	mdanderson.org	37	chr12	11183066	11183066	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgccgcaaaactgaaagaAaagtctgctttagcttcttg	8	9	2	2	rs138895028		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	11183066	A	T	11183066	3	4	37	1	0	0	0	0	1	0	0	0	15675	14	1	5	64	5	TAS2R31	12	11183066	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		11183066	122668829	44	2687											
TAS2R31	259290	mdanderson.org	37	chr12	11183496	11183496	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaatctctttcatgtttaTcacaaaaagttgacaagcca	4	9	3	1	rs199736450		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	11183496	T	C	11183496	3	2	37	1	0	0	0	0	1	0	0	0	15675	1435	50	4	494	4	TAS2R31	12	11183496	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10	430	11183496	122668399	45	2688											
MLL2	8085	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	49432249	49432249	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcgacgggggccggttgaCcagctccaaaccagttggca	14	13	0	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	49432249	C	A	49432249	3	1	37	1	0	0	0	0	1	0	0	0	9698	507	18	5	7807	5	MLL2	12	49432249	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	38248753	49432249	84419646	46	2689											
SMARCC2	6601	hgsc.bcm.edu	37	chr12	56565715	56565715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagtcatctttgtacatttCcagtgcctggtggtagtggt	11	9	2	0	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	56565715	C	T	56565715	3	4	37	1	0	0	0	0	1	0	0	0	14874	864	30	3	1840	3	SMARCC2	12	56565715	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	7133466	56565715	77286180	47	2690											
MPHOSPH8	54737	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr13	20220943	20220943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atttaaagacgaaaacaagaGaagatcccaaagaaaataga	7	5	0	5	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	20220943	G	C	20220943	3	2	37	1	0	0	0	0	1	0	0	0	9805	943	33	5	740	5	MPHOSPH8	13	20220943	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10		20220943	94948935	48	2691											
SRP14	6727	broad.mit.edu	37	chr15	40328594	40328595	+	In_Frame_Ins	INS	-	-	GGG													gtgctgttgctgctgcggcaINSggtgctgctgctgctgctgc					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		GGG	40328595	-	GGG	40328594	7	5	37	1	0	1	1	0	0	0	0	0	15253	175	7	0	63	0	SRP14	15	40328594	In_Frame_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10		40328594	62202798	49	2692											
GOLGA6A	342096	mdanderson.org	37	chr15	74363307	74363307	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctgtacagtggggttgtCatggggagaaccctccctgg	15	10	1	1	rs2740420		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	74363307	C	T	74363307	3	4	37	1	0	0	0	0	1	0	0	0	6613	826	29	4	59	4	GOLGA6A	15	74363307	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	34034713	74363307	28168085	50	2693											
RGMA	56963	broad.mit.edu	37	chr15	93588500	93588500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctccttgcacttggccaCggctgtctcgtatgggaagg	12	12	2	0	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	93588500	C	T	93588500	3	4	37	1	0	0	0	0	1	0	0	0	13372	536	19	1	275	1	RGMA	15	93588500	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	19225193	93588500	8942892	51	2694											
SRRM2	23524	broad.mit.edu	37	chr16	2818052	2818053	+	Frame_Shift_Ins	INS	-	-	C													ccccactctgatgtgggggaINSgccacctgcctctactgggg					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	2818053	-	C	2818052	7	5	37	1	0	1	1	0	0	0	0	0	15269	304	11	0	7561	0	SRRM2	16	2818052	Frame_Shift_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10		2818052	87536701	52	2695											
MEFV	4210	mdanderson.org	37	chr16	3304654	3304654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaccgcaggctggcagcTccgcccccgtacggccgagg	14	18	0	0	rs224224	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	3304654	T	C	3304654	2	2	37	1	0	0	0	0	0	0	0	1	9536	1538	54	2		2	MEFV	16	3304654	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	486602	3304654	87050099	53	2696											
FAM86A	196483	mdanderson.org	37	chr16	5141852	5141852	+	Silent	SNP	C	C	T													gccatcagggtctccgccagCgcttcatacagctcgtccaa					rs117562636	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	5141852	C	T	5141852	2	4	37	1	0	0	0	0	0	0	0	1	5692	755	27	1		1	FAM86A	16	5141852	Silent	SNP	C	TCGA-KN-8422-01A-11D-2310-10	1837198	5141852	85212901	54	2697	75	2									
FAM86A	196483	mdanderson.org	37	chr16	5141855	5141855	+	Silent	SNP	T	T	C													atcagggtctccgccagcgcTtcatacagctcgtccaaagg					rs116976665	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	5141855	T	C	5141855	2	2	37	1	0	0	0	0	0	0	0	1	5692	1606	56	2		2	FAM86A	16	5141855	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	3	5141855	85212898	55	2698	75	2									
CLEC18B	497190	mdanderson.org	37	chr16	74444923	74444923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgatctgggccagcacccCgcctttcctctgtaacccca	7	18	2	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	74444923	C	T	74444923	3	4	37	1	0	0	0	0	1	0	0	0	3532	652	23	1	393	1	CLEC18B	16	74444923	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	69303068	74444923	15909830	56	2699											
WDR59	79726	mdanderson.org	37	chr16	74942828	74942828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagtaggctctgtgggagAcaccgcccgatgcattgtca	14	11	2	1	rs201965155	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	74942828	A	G	74942828	3	3	37	1	0	0	0	0	1	0	0	0	17414	275	10	2	1274	2	WDR59	16	74942828	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	497905	74942828	15411925	57	2700			2	31		3	3	38	N	T_A	3.405148e-09
WDR59	79726	mdanderson.org	37	chr16	74942844	74942844	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagacaccgcccgatgcatTgtcatgggccttgtgaaata	12	10	1	2	rs147993698	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	74942844	T	C	74942844	2	2	37	1	0	0	0	0	0	0	0	1	17414	1799	63	4		4	WDR59	16	74942844	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	16	74942844	15411909	58	2701			2	31		3	3	38	N	T_A	3.405148e-09
WDR59	79726	mdanderson.org	37	chr16	74942865	74942865	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgggccttgtgaaataTaccaggtaacctaaaggagg	12	7	1	1	rs141093453	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	74942865	T	C	74942865	2	2	37	1	0	0	0	0	0	0	0	1	17414	1393	49	4		4	WDR59	16	74942865	Silent	SNP	T	TCGA-KN-8422-01A-11D-2310-10	21	74942865	15411888	59	2702			2	31		3	3	38	N	T_A	3.405148e-09
CDH13	1012	broad.mit.edu	37	chr16	83636109	83636110	+	Frame_Shift_Ins	INS	-	-	G													tcgaggctcaagatatggctINSggactggatgttggattaac					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	83636110	-	G	83636109	7	5	37	1	0	1	1	0	0	0	0	0	3128	1567	55	0	1041	0	CDH13	16	83636109	Frame_Shift_Ins	INS	-	TCGA-KN-8422-01A-11D-2310-10	8693244	83636109	6718644	60	2703											
SPAG5	10615	broad.mit.edu	37	chr17	26919762	26919762	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctctctcaccagatcgTctgttctcaaaggtccattt	5	15	4	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	26919762	T	C	26919762	3	2	37	1	0	0	0	0	1	0	0	0	15081	1667	58	2	3169	2	SPAG5	17	26919762	Missense_Mutation	SNP	T	TCGA-KN-8422-01A-11D-2310-10		26919762	54275448	61	2704											
ADCYAP1	116	mdanderson.org	37	chr18	907710	907710	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacccgctgccagacttcgAtggctcggagccgccgggcg	14	15	0	1	rs2856966	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	907710	A	G	907710	3	3	37	1	0	0	0	0	1	0	0	0	302	333	12	4	167	4	ADCYAP1	18	907710	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10		907710	77169538	62	2705											
MAST1	22983	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	12985463	12985463	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcggtcctcgctccaagCccgcctccccaaagctctcc	8	20	1	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	12985463	C	A	12985463	3	1	37	1	0	0	0	0	1	0	0	0	9401	739	26	5	4594	5	MAST1	19	12985463	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		12985463	46143520	63	2706											
MYO9B	4650	broad.mit.edu	37	chr19	17321179	17321179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggttttcgtctccctatgAgggggtcctggtatgtacgc	15	9	1	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	17321179	A	G	17321179	3	3	37	1	0	0	0	0	1	0	0	0	10163	304	11	2	5928	2	MYO9B	19	17321179	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	4335716	17321179	41807804	64	2707											
PSG9	5678	mdanderson.org	37	chr19	43763023	43763023	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcacagaggacatttaggAtgactgggttactgcggagg	14	7	1	2	rs1135905	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	43763023	A	G	43763023	3	3	37	1	0	0	0	0	1	0	0	0	12751	333	12	4	318	4	PSG9	19	43763023	Missense_Mutation	SNP	A	TCGA-KN-8422-01A-11D-2310-10	26441844	43763023	15365960	65	2708											
TPRX1	284355	mdanderson.org	37	chr19	48305555	48305555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagattgggcctgggatcGggcctgggttcgggcctgag	19	9	0	2	rs147380237		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	48305555	G	A	48305555	3	1	37	1	0	0	0	0	1	0	0	0	16527	1116	39	1	526	1	TPRX1	19	48305555	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	4542532	48305555	10823428	66	2709											
SIGLEC14	100049587	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	52149193	52149193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggctgagggcattccccGtccaggagaatgtgagaggt	18	8	0	3	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	52149193	G	A	52149193	3	1	37	1	0	0	0	0	1	0	0	0	14407	1145	40	1	668	1	SIGLEC14	19	52149193	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	3843638	52149193	6979790	67	2710											
ZNF528	84436	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	52909852	52909852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagtgaagagaaaatagCaaacgatccagacggcaggg	14	7	0	4	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	52909852	C	T	52909852	3	4	37	1	0	0	0	0	1	0	0	0	18074	710	25	4	237	4	ZNF528	19	52909852	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10	760659	52909852	6219131	68	2711											
NLRP7	199713	hgsc.bcm.edu;mdanderson.org	37	chr19	55450827	55450827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagactctgtcctggcggaGgatgtctccgtccaggaaca	14	11	2	1	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	55450827	G	A	55450827	3	1	37	1	0	0	0	0	1	0	0	0	10561	1000	35	4	1785	4	NLRP7	19	55450827	Missense_Mutation	SNP	G	TCGA-KN-8422-01A-11D-2310-10	2540975	55450827	3678156	69	2712											
GART	2618	mdanderson.org	37	chr21	34903861	34903861	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagctgccccaaaggctttCtcctgattgtaagatttttt	7	11	1	2	rs142038738	byfrequency	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		A	34903861	C	A	34903861	3	1	37	1	0	0	0	0	1	0	0	0	6297	912	32	5	2573	5	GART	21	34903861	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		34903861	13226034	70	2713											
SLC19A1	6573	mdanderson.org	37	chr21	46951556	46951556	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagcttcccgcctgggccAggattcatgcgctccagctc	10	18	1	0	rs12659	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		G	46951556	A	G	46951556	2	3	37	1	0	0	0	0	0	0	0	1	14526	175	7	2		2	SLC19A1	21	46951556	Silent	SNP	A	TCGA-KN-8422-01A-11D-2310-10	12047695	46951556	1178339	71	2714											
FAM9A	171482	broad.mit.edu	37	chrX	8767124	8767124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcctgggaagttagaggCgatccctgaacctggttgag	14	9	0	3	novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		T	8767124	C	T	8767124	3	4	37	1	0	0	0	0	1	0	0	0	5708	768	27	1	923	1	FAM9A	23	8767124	Missense_Mutation	SNP	C	TCGA-KN-8422-01A-11D-2310-10		8767124	146503436	72	2715											
FAM122B	159090	broad.mit.edu	37	chrX	133930385	133930386	+	Splice_Site	INS	-	-	C													cttggggacgggggcgggggINSctgggggcggagaaaagtag					novel		TCGA-KN-8422-01A-11D-2310-10	TCGA-KN-8422-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d648c804-4eaf-4252-8b6f-13378158a07d	e13915df-0ba2-4242-b4f7-27733b6a01c1		C	133930386	-	C	133930385	8	5	37	1	0	1	1	0	0	0	1	0	5463	1217	42	0		0	FAM122B	23	133930385	Splice_Site	INS	-	TCGA-KN-8422-01A-11D-2310-10	125163261	133930385	21340175	73	2716											
NRD1	4898	mdanderson.org	37	chr1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	catcatcttcttcttcttccTccacctcctcttcttcttca	0	18	9	0	rs62648104		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	52306079	T	A	52306079	3	1	38	1	0	0	0	0	1	0	0	0	10724	1551	54	5	3338	5	NRD1	1	52306079	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		52306079	196944542	1	2717											
MTX1	4580	mdanderson.org	37	chr1	155178782	155178782	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggacgaggcgccgtgacActccgaggcgcgccgggccg	17	15	0	1	rs760077		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	155178782	A	T	155178782	3	4	38	1	0	0	0	0	1	0	0	0	10045	159	6	5	189	5	MTX1	1	155178782	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	102872703	155178782	94071839	2	2718											
HNRNPU	3192	broad.mit.edu	37	chr1	245022136	245022136	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatacccataagaaaattcTtcttcacctaagaaaataat	3	8	3	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	245022136	T	C	245022136	2	2	38	1	0	0	0	0	0	0	0	1	7331	1606	56	2		2	HNRNPU	1	245022136	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10	89843354	245022136	4228485	3	2719											
KYNU	8942	broad.mit.edu	37	chr2	143718278	143718278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgatcctgttcagtggggTgcatttttacactggacagc	12	8	1	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	143718278	T	C	143718278	3	2	38	1	0	0	0	0	1	0	0	0	8649	1696	59	2	694	2	KYNU	2	143718278	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		143718278	99481095	4	2720											
DNAJB2	3300	hgsc.bcm.edu	37	chr2	220149586	220149586	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggcacagcaccgacggcaGgggcggcccaaggcccagca	16	15	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	220149586	G	T	220149586	3	4	38	1	0	0	0	0	1	0	0	0	4657	991	35	5	882	5	DNAJB2	2	220149586	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	76431308	220149586	23049787	5	2721											
DAZL	1618	broad.mit.edu	37	chr3	16638275	16638275	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgaacatactgagttatAggattcatcgtggttgtggg	12	6	1	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	16638275	A	G	16638275	2	3	38	1	0	0	0	0	0	0	0	1	4278	407	15	2		2	DAZL	3	16638275	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		16638275	181384155	6	2722											
LEKR1	389170	broad.mit.edu	37	chr3	156745919	156745919	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttaatcacaggcgctacaAgagatctaaggcaggaagtg	11	8	2	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	156745919	A	G	156745919	3	3	38	1	0	0	0	0	1	0	0	0	8779	64	3	2	1438	2	LEKR1	3	156745919	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	140107644	156745919	41276511	7	2723											
HTT	3064	broad.mit.edu	37	chr4	3234985	3234985	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagccctgcacggcgtcctCtatgtgctggagtgcgacct	14	13	1	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	3234985	C	G	3234985	2	3	38	1	0	0	0	0	0	0	0	1	7518	900	32	5		5	HTT	4	3234985	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10		3234985	187919291	8	2724											
DSPP	1834	mdanderson.org	37	chr4	88536448	88536448	+	Silent	SNP	C	C	T													gacagcagcaacagcagtgaCagcagtgatagcagtgacag					rs142168734		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	88536448	C	T	88536448	2	4	38	1	0	0	0	0	0	0	0	1	4819	477	17	4		4	DSPP	4	88536448	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	85301463	88536448	102617828	9	2725	76	4									
DSPP	1834	mdanderson.org	37	chr4	88536451	88536451	+	Silent	SNP	C	C	T													agcagcaacagcagtgacagCagtgatagcagtgacagcaa					rs141946550		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	88536451	C	T	88536451	2	4	38	1	0	0	0	0	0	0	0	1	4819	709	25	4		4	DSPP	4	88536451	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	3	88536451	102617825	10	2726	76	4									
DSPP	1834	mdanderson.org	37	chr4	88536457	88536457	+	Silent	SNP	T	T	C													aacagcagtgacagcagtgaTagcagtgacagcaacgaaag					rs142031576		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	88536457	T	C	88536457	2	2	38	1	0	0	0	0	0	0	0	1	4819	1403	49	4		4	DSPP	4	88536457	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10	6	88536457	102617819	11	2727	76	4									
DSPP	1834	mdanderson.org	37	chr4	88536460	88536460	+	Silent	SNP	C	C	T													agcagtgacagcagtgatagCagtgacagcaacgaaagcag					rs199691318		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	88536460	C	T	88536460	2	4	38	1	0	0	0	0	0	0	0	1	4819	709	25	4		4	DSPP	4	88536460	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	3	88536460	102617816	12	2728	76	4									
UGT3A1	133688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	35957478	35957478	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggagccaaaggccacaaggAcaaaccctgcatccccaaag	9	14	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	35957478	A	T	35957478	3	4	38	1	0	0	0	0	1	0	0	0	17069	275	10	5	696	5	UGT3A1	5	35957478	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		35957478	144957782	13	2729											
RASGRF2	5924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	80504195	80504195	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttcttgggcaggggtggAtgaagctggataaaaacgaa	15	4	1	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	80504195	A	G	80504195	3	3	38	1	0	0	0	0	1	0	0	0	13165	333	12	4	3180	4	RASGRF2	5	80504195	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	44546717	80504195	100411065	14	2730											
HNRNPA0	10949	ucsc.edu;bcgsc.ca	37	chr5	137089608	137089608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtaggtcacgaagccaaAgcaacgggagcgcttggtct	15	9	2	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	137089608	A	G	137089608	3	3	38	1	0	0	0	0	1	0	0	0	7314	72	3	2	773	2	HNRNPA0	5	137089608	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	56585413	137089608	43825652	15	2731											
HAVCR1	26762	ucsc.edu	37	chr5	156479568	156479568	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acagttgtcgttggaacagtCgtcattggaacagtcgttgt	12	7	1	0	rs10068551		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	156479568	C	T	156479568	2	4	38	1	0	0	0	0	0	0	0	1	7031	871	31	1		1	HAVCR1	5	156479568	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	19389960	156479568	24435692	16	2732											
HLA-DRB1	3123	mdanderson.org	37	chr6	32549587	32549587	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcaggggctgggtcttTgaaggatatacagtcacctt	13	8	2	1	rs201597010	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	32549587	T	G	32549587	2	3	38	1	0	0	0	0	0	0	0	1	7266	1799	63	5		5	HLA-DRB1	6	32549587	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10		32549587	138565480	17	2733											
HERPUD2	64224	ucsc.edu	37	chr7	35678074	35678074	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgcccaggaaattggttgTctacatttctgcaagaaata	8	8	2	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	35678074	T	C	35678074	3	2	38	1	0	0	0	0	1	0	0	0	7122	1667	58	2	733	2	HERPUD2	7	35678074	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		35678074	123460589	18	2734											
UPP1	7378	broad.mit.edu;hgsc.bcm.edu	37	chr7	48147910	48147911	+	Frame_Shift_Ins	INS	-	-	GGCT													gtaccagcagaggccgcagcINSggctggtgagctacttcatc					novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		GGCT	48147911	-	GGCT	48147910	7	5	38	1	0	1	1	0	0	0	0	0	17118	759	27	0	915	0	UPP1	7	48147910	Frame_Shift_Ins	INS	-	TCGA-KN-8423-01A-11D-2310-10	12469836	48147910	110990753	19	2735	77	2									
UPP1	7378	bcgsc.ca	37	chr7	48147911	48147912	+	Frame_Shift_Ins	INS	-	-	GGCT													taccagcagaggccgcagcgINSgctggtgagctacttcatca					novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		GGCT	48147912	-	GGCT	48147911	7	5	38	1	0	1	1	0	0	0	0	0	17118	1116	39	0	916	0	UPP1	7	48147911	Frame_Shift_Ins	INS	-	TCGA-KN-8423-01A-11D-2310-10	1	48147911	110990752	20	2736	77	2									
IQUB	154865	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	123119977	123119977	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagcagctttcctttcagCtccagtaaaagattggttaa	8	9	1	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	123119977	C	G	123119977	3	3	38	1	0	0	0	0	1	0	0	0	7881	797	28	5	1117	5	IQUB	7	123119977	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	74972066	123119977	36018686	21	2737											
NOBOX	135935	bcgsc.ca	37	chr7	144096937	144096937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatttttcgccacttggccCggcgattctggaaccacacc	8	16	1	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	144096937	C	T	144096937	3	4	38	1	0	0	0	0	1	0	0	0	10591	652	23	1	1028	1	NOBOX	7	144096937	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	20976960	144096937	15041726	22	2738											
PCMTD1	115294	bcgsc.ca	37	chr8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgttaattctctgtttaActctctttcttttccttttg	4	8	3	0	rs111785933		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	52733143	A	G	52733143	3	3	38	1	0	0	0	0	1	0	0	0	11665	43	2	2	235	2	PCMTD1	8	52733143	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		52733143	93630879	23	2739											
EYA1	2138	broad.mit.edu	37	chr8	72129213	72129213	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcaccttaggtcctgtcCgttatcatctgaagaaacat	7	11	3	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	72129213	C	T	72129213	3	4	38	1	0	0	0	0	1	0	0	0	5368	661	23	1	616	1	EYA1	8	72129213	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	19396070	72129213	74234809	24	2740											
PRSS3	5646	mdanderson.org	37	chr9	33794840	33794840	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagaaggggaggagtgcGccattggttttccatcctcc	13	9	0	2	rs10117993	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	33794840	G	A	33794840	2	1	38	1	0	0	0	0	0	0	0	1	12711	1102	38	1		1	PRSS3	9	33794840	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10		33794840	107418591	25	2741											
SYK	6850	bcgsc.ca	37	chr9	93650875	93650875	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagggtgtccaagagagAtgtacgatctcatgaatctg	12	8	2	3	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	93650875	A	G	93650875	3	3	38	1	0	0	0	0	1	0	0	0	15539	333	12	4	1847	4	SYK	9	93650875	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	59856035	93650875	47562556	26	2742											
RC3H2	54542	broad.mit.edu	37	chr9	125620200	125620200	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtaattaaaacctttcttAcatccgcacgaaagtctaca	4	10	2	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	125620200	A	G	125620200	5	3	38	1	0	0	0	0	0	0	1	0	13259	405	14	2	1233	2	RC3H2	9	125620200	Splice_Site	SNP	A	TCGA-KN-8423-01A-11D-2310-10	31969325	125620200	15593231	27	2743											
NMT2	9397	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr10	15172216	15172216	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agatcccttccaggttcactCttctagtgatctctcggatt	7	12	4	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	15172216	C	T	15172216	3	4	38	1	0	0	0	0	1	0	0	0	10583	913	32	4	705	4	NMT2	10	15172216	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10		15172216	120362531	28	2744											
FAM171A1	221061	bcgsc.ca	37	chr10	15254967	15254967	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccgtttctgccaggggcTtttcttgtcttctccttggt	9	13	4	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	15254967	T	C	15254967	3	2	38	1	0	0	0	0	1	0	0	0	5533	1609	56	2	56	2	FAM171A1	10	15254967	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	82751	15254967	120279780	29	2745											
GPRIN2	9721	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	46998903	46998903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctccagccgccccgagcCgggtccctgggcacccctga	13	19	0	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	46998903	C	T	46998903	3	4	38	1	0	0	0	0	1	0	0	0	6788	652	23	1	25	1	GPRIN2	10	46998903	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	31743936	46998903	88535844	30	2746											
PRLHR	2834	mdanderson.org	37	chr10	120353899	120353899	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagccagcagacggcgaaCaccaccacgatcaccaccag	10	17	1	1	rs116062593	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	120353899	C	A	120353899	2	1	38	1	0	0	0	0	0	0	0	1	12619	465	17	5		5	PRLHR	10	120353899	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	73354996	120353899	15180848	31	2747											
PAOX	196743	ucsc.edu;bcgsc.ca	37	chr10	135193598	135193598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacgggctgctgggggagAaggagctgtcccaggagaac	18	8	0	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	135193598	A	G	135193598	3	3	38	1	0	0	0	0	1	0	0	0	11502	247	9	4	283	4	PAOX	10	135193598	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	14839699	135193598	341149	32	2748											
MUC6	4588	mdanderson.org	37	chr11	1016606	1016606	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtcccactggtggtcacTgtcattggtggggctgtgtg	16	9	2	0	rs148905794		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	1016606	T	C	1016606	2	2	38	1	0	0	0	0	0	0	0	1	10058	1567	55	2		2	MUC6	11	1016606	Silent	SNP	T	TCGA-KN-8423-01A-11D-2310-10		1016606	133989910	33	2749											
MUC2	4583	broad.mit.edu	37	chr11	1092849	1092849	+	Frame_Shift_Del	DEL	G	G	-													ccaacacccaccggcacacaGaccccaacaacgacacccat					novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		-	1092849	G	-	1092849	7	5	38	1	0	1	0	1	0	0	0	0	10053	933	33	0	4786	0	MUC2	11	1092849	Frame_Shift_Del	DEL	G	TCGA-KN-8423-01A-11D-2310-10	76243	1092849	133913667	34	2750											
KRTAP5-8	57830	mdanderson.org	37	chr11	71249605	71249605	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgccagtccagctgctgCaagccctgctgttcccagtc	10	16	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	71249605	C	T	71249605	2	4	38	1	0	0	0	0	0	0	0	1	8629	718	25	4		4	KRTAP5-8	11	71249605	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	70156756	71249605	63756911	35	2751											
KIRREL3	84623	broad.mit.edu	37	chr11	126396466	126396466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacacccagagccaagcCgtccttgatccacagaacga	8	17	0	3	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	126396466	C	T	126396466	3	4	38	1	0	0	0	0	1	0	0	0	8387	652	23	1	2253	1	KIRREL3	11	126396466	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	55146861	126396466	8610050	36	2752											
RNF10	9921	hgsc.bcm.edu	37	chr12	120972755	120972755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggcggggccagccggcgaGtctaaacccaagagcggtaa	15	12	1	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	120972755	G	A	120972755	2	1	38	1	0	0	0	0	0	0	0	1	13517	1020	36	4		4	RNF10	12	120972755	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10		120972755	12879140	37	2753											
EP400	57634	mdanderson.org	37	chr12	132547141	132547141	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcaacaGcagcagcagcaacagacgac	11	14	0	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	132547141	G	A	132547141	2	1	38	1	0	0	0	0	0	0	0	1	5188	962	34	4		4	EP400	12	132547141	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10	11574386	132547141	1304754	38	2754											
CSNK1A1L	122011	broad.mit.edu	37	chr13	37678605	37678605	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcaaagcgcagcccacgAcagtagttcaagtacatggc	9	13	2	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	37678605	A	G	37678605	2	3	38	1	0	0	0	0	0	0	0	1	3982	273	10	2		2	CSNK1A1L	13	37678605	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		37678605	77491273	39	2755											
MYCBP2	23077	hgsc.bcm.edu;bcgsc.ca	37	chr13	77714270	77714270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctacggatgcgaagccccGcactgtccttggccacaaat	11	14	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	77714270	G	A	77714270	3	1	38	1	0	0	0	0	1	0	0	0	10096	1087	38	1	6738	1	MYCBP2	13	77714270	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	40035665	77714270	37455608	40	2756											
TPP2	7174	ucsc.edu	37	chr13	103288039	103288039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagtatttgctcaaggacAtggtattattcaggtattgt	10	4	2	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	103288039	A	G	103288039	3	3	38	1	0	0	0	0	1	0	0	0	16517	217	8	4	1542	4	TPP2	13	103288039	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	25573769	103288039	11881839	41	2757											
ACIN1	22985	mdanderson.org	37	chr14	23548793	23548793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctgaacgagaacgtgaaCgtgaccttgatctggactct	11	9	2	5	rs80007670	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	23548793	C	T	23548793	3	4	38	1	0	0	0	0	1	0	0	0	142	536	19	1	2303	1	ACIN1	14	23548793	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10		23548793	83800747	42	2758											
MLH3	27030	broad.mit.edu	37	chr14	75513814	75513814	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcagggtcataggacTttctctcaaactaggcatct	7	12	5	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	75513814	T	C	75513814	3	2	38	1	0	0	0	0	1	0	0	0	9695	1609	56	2	1864	2	MLH3	14	75513814	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	51965021	75513814	31835726	43	2759											
FLVCR2	55640	mdanderson.org	37	chr14	76045417	76045418	+	Missense_Mutation	DNP	GG	GG	CA													tcggtccatcccagcgtctcGgtccatcccagcgtctccat					rs143304751	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		CA	76045418	GG	CA	76045417	3	2	38	1	0	0	0	0	1	0	0	0	5995	1103	39	5	104	5	FLVCR2	14	76045417	Missense_Mutation	DNP	GG	TCGA-KN-8423-01A-11D-2310-10	531603	76045417	31304123	44	2760											
HSP90AA1	3320	mdanderson.org	37	chr14	102551272	102551272	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcttctttttctttttcttCttctttgtcttccttttctt	1	11	8	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	102551272	C	T	102551272	3	4	38	1	0	0	0	0	1	0	0	0	7461	922	32	4	1499	4	HSP90AA1	14	102551272	Missense_Mutation	SNP	C	TCGA-KN-8423-01A-11D-2310-10	26505855	102551272	4798268	45	2761											
AHNAK2	113146	mdanderson.org	37	chr14	105411957	105411957	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggctcctggggcctcgacGtccacctccatgctgggctg	13	15	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	105411957	G	A	105411957	2	1	38	1	0	0	0	0	0	0	0	1	415	1136	40	1		1	AHNAK2	14	105411957	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10	2860685	105411957	1937583	46	2762			1	32		2	2	15	N	T_G	2.668204e-05
AHNAK2	113146	mdanderson.org	37	chr14	105411971	105411971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgacgtccacctccatgcTgggctgagacacctccacgt	9	17	0	1	rs28737397		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	105411971	T	C	105411971	3	2	38	1	0	0	0	0	1	0	0	0	415	1580	55	2	7574	2	AHNAK2	14	105411971	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	14	105411971	1937569	47	2763			1	32		2	2	15	N	T_G	2.668204e-05
MTA1	9112	bcgsc.ca	37	chr14	105932850	105932850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccgccaaggtggcccccgTcatcaacaacggctccccca	9	20	2	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	105932850	T	C	105932850	3	2	38	1	0	0	0	0	1	0	0	0	9986	1667	58	2	1778	2	MTA1	14	105932850	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	520879	105932850	1416690	48	2764											
MGA	23269	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	42052530	42052530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttggacaggctccaccaAttcctctaaaactgaagcct	7	12	1	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	42052530	A	G	42052530	3	3	38	1	0	0	0	0	1	0	0	0	9617	101	4	4	7275	4	MGA	15	42052530	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		42052530	60478862	49	2765											
METTL9	51108	hgsc.bcm.edu	37	chr16	21611112	21611112	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtccgtgtggctggcgcggAggatgtggacgctgcggagc	20	10	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	21611112	A	T	21611112	3	4	38	1	0	0	0	0	1	0	0	0	9585	295	11	5	60	5	METTL9	16	21611112	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		21611112	68743641	50	2766											
FHOD1	29109	bcgsc.ca	37	chr16	67271285	67271285	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccgggagcgccgccagcgTctggagggcggggataagaa	19	10	1	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	67271285	T	C	67271285	3	2	38	1	0	0	0	0	1	0	0	0	5931	1681	58	2	2700	2	FHOD1	16	67271285	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	45660173	67271285	23083468	51	2767											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7577566	7577566	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgcccatgcaggaactgtTacacatgtagttgtagtgga	12	9	0	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	7577566	T	C	7577566	3	2	38	1	0	0	0	0	1	0	0	0	16486	1754	61	4	575	4	TP53	17	7577566	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10		7577566	73617644	52	2768											
ZNF555	148254	broad.mit.edu;hgsc.bcm.edu	37	chr19	2853382	2853382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caattggcccatatctttacGaaaacatatgagaacacata	5	9	1	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	2853382	G	A	2853382	3	1	38	1	0	0	0	0	1	0	0	0	18091	1058	37	1	1333	1	ZNF555	19	2853382	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10		2853382	56275601	53	2769											
MUC16	94025	mdanderson.org	37	chr19	9005616	9005616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccagctcagtgatgctgtGggtcagctggctcagctccc	12	14	3	1	rs78831402		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	9005616	G	T	9005616	3	4	38	1	0	0	0	0	1	0	0	0	10051	1348	47	5	3889	5	MUC16	19	9005616	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	6152234	9005616	50123367	54	2770											
MUC16	94025	mdanderson.org	37	chr19	9018508	9018508	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcatgtcctcctcatactTcaggttggtgatggtgaagt	11	8	2	2	rs74488264		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	9018508	T	G	9018508	3	3	38	1	0	0	0	0	1	0	0	0	10051	1792	62	5	6101	5	MUC16	19	9018508	Missense_Mutation	SNP	T	TCGA-KN-8423-01A-11D-2310-10	12892	9018508	50110475	55	2771											
ZNF20	7568	broad.mit.edu	37	chr19	12244276	12244276	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagttctttcatgtactggaAgggtagtggaacgagtaaag	14	4	2	0	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	12244276	A	G	12244276	3	3	38	1	0	0	0	0	1	0	0	0	17866	72	3	2	877	2	ZNF20	19	12244276	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	3225768	12244276	46884707	56	2772											
CRTC1	23373	broad.mit.edu	37	chr19	18879483	18879483	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtggccccctgttgccCagcgccagcctgactcgtgg	13	17	0	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	18879483	C	T	18879483	2	4	38	1	0	0	0	0	0	0	0	1	3928	581	21	4		4	CRTC1	19	18879483	Silent	SNP	C	TCGA-KN-8423-01A-11D-2310-10	6635207	18879483	40249500	57	2773											
GAPDHS	26330	hgsc.bcm.edu	37	chr19	36033313	36033313	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccatacaggcagcttcggTaagctggggagaggtgccca	14	11	0	1	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		C	36033313	T	C	36033313	5	2	38	1	0	0	0	0	0	0	1	0	6291	1652	57	2	560	2	GAPDHS	19	36033313	Splice_Site	SNP	T	TCGA-KN-8423-01A-11D-2310-10	17153830	36033313	23095670	58	2774											
PTPRA	5786	broad.mit.edu;bcgsc.ca	37	chr20	2998555	2998555	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaacctgaaggagagaaAggaggtaagtggaaaaattg	13	4	0	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	2998555	A	G	2998555	3	3	38	1	0	0	0	0	1	0	0	0	12887	72	3	2	1075	2	PTPRA	20	2998555	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10		2998555	60026965	59	2775											
NCOA3	8202	mdanderson.org	37	chr20	46279863	46279863	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcaacagcaacagcaacagca	10	14	0	0	rs141008500	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	46279863	G	A	46279863	2	1	38	1	0	0	0	0	0	0	0	1	10309	962	34	4		4	NCOA3	20	46279863	Silent	SNP	G	TCGA-KN-8423-01A-11D-2310-10	43281308	46279863	16745657	60	2776											
KRTAP10-2	386679	mdanderson.org	37	chr21	45970772	45970772	+	Silent	SNP	A	A	G													cagatggacttgcagcagacAggcttgcagcagacggacac					rs76021731	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		G	45970772	A	G	45970772	2	3	38	1	0	0	0	0	0	0	0	1	8570	175	7	2		2	KRTAP10-2	21	45970772	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		45970772	2159123	61	2777	78	2									
KRTAP10-2	386679	mdanderson.org	37	chr21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A													gatggacttgcagcagacagGcttgcagcagacggacacac					rs76536096	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		A	45970774	G	A	45970774	3	1	38	1	0	0	0	0	1	0	0	0	8570	1203	42	3	203	3	KRTAP10-2	21	45970774	Missense_Mutation	SNP	G	TCGA-KN-8423-01A-11D-2310-10	2	45970774	2159121	62	2778	78	2									
NEFH	4744	ucsc.edu;mdanderson.org	37	chr22	29885594	29885594	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgagaaggccaagtccccAgagaaggaagaggccaagtc	13	11	0	3	rs79235463	byfrequency	TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	29885594	A	T	29885594	2	4	38	1	0	0	0	0	0	0	0	1	10393	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-KN-8423-01A-11D-2310-10		29885594	21418972	63	2779											
ENTHD1	150350	broad.mit.edu	37	chr22	40161248	40161248	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccgtgtggttgtcttgaggAttttatcatccatctgaatg	10	8	3	2	novel		TCGA-KN-8423-01A-11D-2310-10	TCGA-KN-8423-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07943d6c-20fe-4b85-9c02-3b7eab4069c1	09835591-2837-4694-87b2-df002105d3e7		T	40161248	A	T	40161248	3	4	38	1	0	0	0	0	1	0	0	0	5176	333	12	5	632	5	ENTHD1	22	40161248	Missense_Mutation	SNP	A	TCGA-KN-8423-01A-11D-2310-10	10275654	40161248	11143318	64	2780											
LOC440563	0	mdanderson.org	37	chr1	13183530	13183530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcataataatcccgttgaaAgccatagtccaagtcaaaag	6	9	2	1	rs71253869		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	13183530	A	G	13183530	3	3	39	1	0	0	0	0	1	0	0	0	8949	72	3	2	542	2	LOC440563	1	13183530	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		13183530	236067091	1	2781											
ZSCAN20	7579	bcgsc.ca	37	chr1	33958892	33958892	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccagaacagccaggtgtAccgggccattgcagagcggc	13	13	1	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	33958892	A	G	33958892	3	3	39	1	0	0	0	0	1	0	0	0	18334	391	14	2	1572	2	ZSCAN20	1	33958892	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	20775362	33958892	215291729	2	2782											
CLCA1	1179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	86954776	86954776	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttaacgaggtcaaacAaagtggtgccatcatccaca	9	10	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	86954776	A	T	86954776	3	4	39	1	0	0	0	0	1	0	0	0	3486	130	5	5	1310	5	CLCA1	1	86954776	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	52995884	86954776	162295845	3	2783											
WNT2B	7482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	113062943	113062943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgcagcaagacatcaAaaggaacagacggttgtgaa	12	7	2	3	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	113062943	A	G	113062943	3	3	39	1	0	0	0	0	1	0	0	0	17493	15	1	4	1139	4	WNT2B	1	113062943	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	26108167	113062943	136187678	4	2784											
RPTN	126638	broad.mit.edu	37	chr1	152127952	152127952	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatagtgggaactctggccTtgtctgtccatctgactgta	10	11	3	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	152127952	T	C	152127952	2	2	39	1	0	0	0	0	0	0	0	1	13759	1606	56	2		2	RPTN	1	152127952	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	39065009	152127952	97122669	5	2785											
KIRREL	55243	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	158056511	158056511	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gccatccctagtggcaaggaGacttccatcgagctggatgt	12	11	0	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	158056511	G	A	158056511	2	1	39	1	0	0	0	0	0	0	0	1	8385	933	33	4		4	KIRREL	1	158056511	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	5928559	158056511	91194110	6	2786											
OR6N2	81442	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	158746533	158746533	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctcttgatagctttaAtgatttccttgttacgaaga	8	7	1	3	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	158746533	A	G	158746533	3	3	39	1	0	0	0	0	1	0	0	0	11286	101	4	4	63	4	OR6N2	1	158746533	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	690022	158746533	90504088	7	2787											
C1orf27	54953	ucsc.edu	37	chr1	186388183	186388183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtccttgctgcgggtaTctcctttcattacttcagtg	9	11	3	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	186388183	T	C	186388183	3	2	39	1	0	0	0	0	1	0	0	0	2056	1435	50	4	1390	4	C1orf27	1	186388183	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	27641650	186388183	62862438	8	2788											
KLHL12	59349	bcgsc.ca	37	chr1	202888918	202888918	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaggctgcaggaagcagtTcttgtacattctccactgtc	10	11	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	202888918	T	C	202888918	3	2	39	1	0	0	0	0	1	0	0	0	8429	1783	62	4	1432	4	KLHL12	1	202888918	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	16500735	202888918	46361703	9	2789											
MARCO	8685	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	119731958	119731958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcctggtgcccctggcccGccgggaccacctgctgagaa	13	16	0	1	rs140866852		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	119731958	G	A	119731958	2	1	39	1	0	0	0	0	0	0	0	1	9388	1074	38	1		1	MARCO	2	119731958	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10		119731958	123467415	10	2790											
LRP2	4036	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	170060758	170060758	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcacgatccacgcccgtcAgagtgctgcgttcaatcctc	8	16	3	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	170060758	A	G	170060758	3	3	39	1	0	0	0	0	1	0	0	0	9028	188	7	2	6380	2	LRP2	2	170060758	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	50328800	170060758	73138615	11	2791											
TTN	7273	broad.mit.edu	37	chr2	179497287	179497287	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccacttgtgtgcttatcTtcagcttcaaacatgtattt	6	9	3	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	179497287	T	C	179497287	2	2	39	1	0	0	0	0	0	0	0	1	16841	1606	56	2		2	TTN	2	179497287	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	9436529	179497287	63702086	12	2792											
ERBB4	2066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	212578299	212578299	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtttacacattttaaTcccattttcttctacttcca	3	11	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	212578299	T	C	212578299	3	2	39	1	0	0	0	0	1	0	0	0	5248	1435	50	4	3052	4	ERBB4	2	212578299	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	33081012	212578299	30621074	13	2793											
ALPPL2	251	mdanderson.org	37	chr2	233271799	233271799	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acccggacttctggaaccgcCaggcagccgaggccctgggt	14	15	1	0	rs146369944	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	233271799	C	G	233271799	3	3	39	1	0	0	0	0	1	0	0	0	549	595	21	5	106	5	ALPPL2	2	233271799	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	20693500	233271799	9927574	14	2794											
CAPN10	11132	mdanderson.org	37	chr2	241526428	241526428	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgcgacttgtctacgccgCtggcccagttccgcgaggac	12	15	2	0	rs138005500		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	241526428	C	G	241526428	3	3	39	1	0	0	0	0	1	0	0	0	2648	796	28	5	102	5	CAPN10	2	241526428	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	8254629	241526428	1672945	15	2795											
ZNF385D	79750	bcgsc.ca	37	chr3	21462711	21462711	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcctatttggaatttagtAaggagcaaacagcacaggag	10	7	0	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	21462711	A	G	21462711	3	3	39	1	0	0	0	0	1	0	0	0	17983	362	13	4	8	4	ZNF385D	3	21462711	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		21462711	176559719	16	2796											
XYLB	9942	hgsc.bcm.edu;mdanderson.org	37	chr3	38388378	38388378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccatggcggagcacgcccctCgccgctgctgcctgggctgg	15	17	0	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	38388378	C	T	38388378	3	4	39	1	0	0	0	0	1	0	0	0	17568	884	31	1	21	1	XYLB	3	38388378	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	16925667	38388378	159634052	17	2797											
VPRBP	9730	broad.mit.edu;mdanderson.org	37	chr3	51475088	51475088	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgaatatgggaagtagCtgaaatgaacaccaaataca	9	6	0	3	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	51475088	C	T	51475088	5	4	39	1	0	0	0	0	0	0	1	0	17291	811	28	4	3402	4	VPRBP	3	51475088	Splice_Site	SNP	C	TCGA-KN-8424-01A-11D-2310-10	13086710	51475088	146547342	18	2798											
ALAS1	211	broad.mit.edu	37	chr3	52233380	52233380	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgatggaagttggggcCaagccagcccctcgggcatt	14	10	0	2	rs182395582		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	52233380	C	A	52233380	2	1	39	1	0	0	0	0	0	0	0	1	484	581	21	5		5	ALAS1	3	52233380	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	758292	52233380	145789050	19	2799											
FAM194A	131831	broad.mit.edu	37	chr3	150421569	150421569	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctccacctcTtcctcctcctcctccacctc	0	26	1	0	rs142916868	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	150421569	T	C	150421569	2	2	39	1	0	0	0	0	0	0	0	1	5571	1606	56	2		2	FAM194A	3	150421569	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	98188189	150421569	47600861	20	2800											
EIF4G1	1981	broad.mit.edu	37	chr3	184035256	184035256	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagatctcctacccagccTcccagggggcctactacatc	7	19	1	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	184035256	T	C	184035256	3	2	39	1	0	0	0	0	1	0	0	0	5075	1551	54	2	305	2	EIF4G1	3	184035256	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	33613687	184035256	13987174	21	2801											
MUC4	4585	mdanderson.org	37	chr3	195510169	195510169	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatGctgaggaagtgtcggtgaca	19	6	0	3	rs201935809		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	195510169	G	A	195510169	3	1	39	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195510169	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	11474913	195510169	2512261	22	2802											
MUC4	4585	mdanderson.org	37	chr3	195511534	195511534	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagcgtcggtgacaTgaagaggggtggcgtgacct	18	7	0	5	rs75459784	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	195511534	T	G	195511534	3	3	39	1	0	0	0	0	1	0	0	0	10056	1464	51	5		5	MUC4	3	195511534	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	1365	195511534	2510896	23	2803											
SHROOM3	57619	mdanderson.org	37	chr4	77662125	77662125	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatcaaggacgcacagtcCcgtgtcttgggggccacctc	12	14	2	0	rs36036308		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	77662125	C	T	77662125	2	4	39	1	0	0	0	0	0	0	0	1	14393	610	22	3		3	SHROOM3	4	77662125	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		77662125	113492151	24	2804											
GZMK	3003	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	54329718	54329718	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accaagaaataccagacttgGatcaaaagcaaccttgtccc	6	12	1	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	54329718	G	A	54329718	4	1	39	1	0	0	0	0	0	1	0	0	6976	1183	41	3	777	3	GZMK	5	54329718	Nonsense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10		54329718	126585542	25	2805											
PCDHA8	56140	mdanderson.org	37	chr5	140222641	140222641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactggtggcgcagcgagcAagctggtgccgcggtctgtg	18	11	1	0	rs6580012	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	140222641	A	G	140222641	3	3	39	1	0	0	0	0	1	0	0	0	11609	131	5	4	1737	4	PCDHA8	5	140222641	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	85892923	140222641	40692619	26	2806											
PCDHA10	56139	bcgsc.ca	37	chr5	140236871	140236871	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctggacagcgctctggAccgcgagagggtgtcggcct	18	11	1	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	140236871	A	G	140236871	3	3	39	1	0	0	0	0	1	0	0	0	11599	275	10	2	1240	2	PCDHA10	5	140236871	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	14230	140236871	40678389	27	2807											
STC2	8614	broad.mit.edu	37	chr5	172750382	172750382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatgcagccgaacctgtGccgcagagcgtgggccttac	13	13	0	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	172750382	G	T	172750382	3	4	39	1	0	0	0	0	1	0	0	0	15376	1319	46	5	570	5	STC2	5	172750382	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	32513511	172750382	8164878	28	2808											
DSP	1832	ucsc.edu	37	chr6	7572208	7572208	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagattcgcaggcagatAgagcactgcgagggcaggat	15	8	0	4	rs151049942	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	7572208	A	G	7572208	3	3	39	1	0	0	0	0	1	0	0	0	4818	410	15	2	2095	2	DSP	6	7572208	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		7572208	163542859	29	2809											
MDC1	9656	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	30672144	30672144	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aactggctcaggggtcttgaCagaggacctatttgtcctgc	12	10	2	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	30672144	C	A	30672144	3	1	39	1	0	0	0	0	1	0	0	0	9480	478	17	5	1477	5	MDC1	6	30672144	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	23099936	30672144	140442923	30	2810											
HLA-C	3107	mdanderson.org	37	chr6	31239049	31239049	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taatccttgccgtcgtaggcGgactggtcatacccgcggag	13	12	1	0	rs1065406	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	31239049	G	T	31239049	2	4	39	1	0	0	0	0	0	0	0	1	7255	1103	39	5		5	HLA-C	6	31239049	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	566905	31239049	139876018	31	2811			1	33		2	2	12	N	G_A	3.233494e-05
HLA-C	3107	mdanderson.org	37	chr6	31239060	31239060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtaggcggactggtcatAcccgcggaggaggcgcccgt	17	12	1	0	rs2308574	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	31239060	A	G	31239060	3	3	39	1	0	0	0	0	1	0	0	0	7255	391	14	2	715	2	HLA-C	6	31239060	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	11	31239060	139876007	32	2812			1	33		2	2	12	N	G_A	3.233494e-05
HSP90AB1	3326	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	44218791	44218791	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtttctttcagcactttTctgtagaaggtcagttggaa	10	6	4	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	44218791	T	G	44218791	3	3	39	1	0	0	0	0	1	0	0	0	7462	1783	62	5	986	5	HSP90AB1	6	44218791	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	12979731	44218791	126896276	33	2813											
MAP3K4	4216	bcgsc.ca	37	chr6	161527702	161527702	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgcacgttggcttgaggaAggtgaccttcaaatggcaaa	12	7	1	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	161527702	A	G	161527702	3	3	39	1	0	0	0	0	1	0	0	0	9329	72	3	2	4091	2	MAP3K4	6	161527702	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	117308911	161527702	9587365	34	2814											
DNAH11	8701	broad.mit.edu;hgsc.bcm.edu	37	chr7	21904162	21904165	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													ctactctcaagattttgttgAgaaagaaagagatagaccct					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		-	21904165	AGAA	-	21904162	7	5	39	1	0	1	0	1	0	0	0	0	4636	296	11	0	11683	0	DNAH11	7	21904162	Frame_Shift_Del	DEL	AGAA	TCGA-KN-8424-01A-11D-2310-10		21904162	137234501	35	2815	79	2									
DNAH11	8701	bcgsc.ca	37	chr7	21904163	21904166	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													tactctcaagattttgttgaGaaagaaagagatagaccctc					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		-	21904166	AGAA	-	21904163	7	5	39	1	0	1	0	1	0	0	0	0	4636	942	33	0	11684	0	DNAH11	7	21904163	Frame_Shift_Del	DEL	AGAA	TCGA-KN-8424-01A-11D-2310-10	1	21904163	137234500	36	2816	79	2									
NPSR1	387129	broad.mit.edu	37	chr7	34724247	34724247	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttttccacatggaggagAaagaagaagtcaagaatgac	10	6	1	5	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	34724247	A	G	34724247	2	3	39	1	0	0	0	0	0	0	0	1	10679	243	9	4		4	NPSR1	7	34724247	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	12820084	34724247	124414416	37	2817											
TNS3	64759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	47451335	47451335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gggcactcaccatgacatctCccttcagaagctgggccggc	11	15	3	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	47451335	C	G	47451335	3	3	39	1	0	0	0	0	1	0	0	0	16448	855	30	5	3700	5	TNS3	7	47451335	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	12727088	47451335	111687328	38	2818											
FGL2	10875	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	76828559	76828559	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	catttgccatccaaactattGacaacaaatgttagatttgc	5	9	0	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	76828559	G	A	76828559	2	1	39	1	0	0	0	0	0	0	0	1	5922	1277	45	4		4	FGL2	7	76828559	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	29377224	76828559	82310104	39	2819											
KLHDC10	23008	hgsc.bcm.edu	37	chr7	129710524	129710524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggacaggaaccgccggagggGaggaggcgccgccggcgctg	21	12	0	0	rs1062154		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	129710524	G	C	129710524	3	2	39	1	0	0	0	0	1	0	0	0	8416	1174	41	5	43	5	KLHDC10	7	129710524	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	52881965	129710524	29428139	40	2820											
OR2A5	393046	broad.mit.edu	37	chr7	143748124	143748124	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcatcctggtggggccGctctgcctggtgctggtctc	15	12	3	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	143748124	G	A	143748124	2	1	39	1	0	0	0	0	0	0	0	1	11060	1074	38	1		1	OR2A5	7	143748124	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	14037600	143748124	15390539	41	2821											
MLL3	58508	hgsc.bcm.edu;mdanderson.org	37	chr7	152132844	152132845	+	Silent	DNP	CC	CC	TT													tggcggcggctgcggctgctCcacgctcttgtcctcctccg					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		TT	152132845	CC	TT	152132844	2	4	39	1	0	0	0	0	0	0	0	1	9699	864	30	3		3	MLL3	7	152132844	Silent	DNP	CC	TCGA-KN-8424-01A-11D-2310-10	8384720	152132844	7005819	42	2822											
RNF32	140545	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	156437191	156437191	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttttttcctactttttAgggtcactcatctaagaaag	6	8	3	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	156437191	A	G	156437191	5	3	39	1	0	0	0	0	0	0	1	0	13583	434	15	2	20	2	RNF32	7	156437191	Splice_Site	SNP	A	TCGA-KN-8424-01A-11D-2310-10	4304347	156437191	2701472	43	2823											
TG	7038	hgsc.bcm.edu	37	chr8	134128949	134128949	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taccatgctcctgaaaactaCggccatggcaggtaagacgc	10	12	0	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	134128949	C	T	134128949	2	4	39	1	0	0	0	0	0	0	0	1	15917	547	19	1		1	TG	8	134128949	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		134128949	12235073	44	2824											
PSCA	8000	mdanderson.org	37	chr8	143763547	143763547	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctctggggacccggccagctCtaggctctggggggccccgc	16	16	3	0	rs1045531	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	143763547	C	A	143763547	2	1	39	1	0	0	0	0	0	0	0	1	12734	900	32	5		5	PSCA	8	143763547	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	9634598	143763547	2600475	45	2825											
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874055	144874055	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctcctcaccaggcgtccCggggaggtgctggtctgggg	18	13	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	144874055	C	T	144874055	2	4	39	1	0	0	0	0	0	0	0	1	14034	639	23	1		1	SCRIB	8	144874055	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	1110508	144874055	1489967	46	2826											
ADCK5	203054	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	145617189	145617189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcagatattttacaccGgcttcatccactcggaccca	7	14	1	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	145617189	G	A	145617189	3	1	39	1	0	0	0	0	1	0	0	0	291	1116	39	1	1101	1	ADCK5	8	145617189	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	743134	145617189	746833	47	2827											
GLIS3	169792	broad.mit.edu	37	chr9	3856040	3856040	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataccatttggttgaaaagaAgagtttgtttctggctgata	10	4	1	4	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	3856040	A	G	3856040	2	3	39	1	0	0	0	0	0	0	0	1	6503	59	3	2		2	GLIS3	9	3856040	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10		3856040	137357391	48	2828											
HABP4	22927	broad.mit.edu	37	chr9	99227725	99227725	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaacagagtttttgacGcttttgaccagagaggaaag	13	6	0	4	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	99227725	G	T	99227725	3	4	39	1	0	0	0	0	1	0	0	0	6997	1087	38	5	629	5	HABP4	9	99227725	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	95371685	99227725	41985706	49	2829											
NUP188	23511	broad.mit.edu	37	chr9	131730829	131730829	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgttcagtgccttcgggaAcagtccatgctgctagaaat	10	9	1	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	131730829	A	G	131730829	2	3	39	1	0	0	0	0	0	0	0	1	10837	40	2	2		2	NUP188	9	131730829	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	32503104	131730829	9482602	50	2830											
SNAPC4	6621	mdanderson.org	37	chr9	139272502	139272502	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcaggcccaggctggggTaggggcggcttctccaggtc	16	12	2	0	rs3812565	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	139272502	T	C	139272502	2	2	39	1	0	0	0	0	0	0	0	1	14935	1625	57	2		2	SNAPC4	9	139272502	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	7541673	139272502	1940929	51	2831											
ZNF438	220929	broad.mit.edu	37	chr10	31138701	31138701	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagggttcagactgccAtgggtgttggtcactggtgg	18	7	2	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	31138701	A	G	31138701	2	3	39	1	0	0	0	0	0	0	0	1	18015	214	8	4		4	ZNF438	10	31138701	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10		31138701	104396046	52	2832											
JMJD1C	221037	bcgsc.ca	37	chr10	64957253	64957254	+	Frame_Shift_Ins	INS	-	-	A													ggcagacccagtgaatgttaINSaacaatgttgcttcacatgc					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	64957254	-	A	64957253	7	5	39	1	0	1	1	0	0	0	0	0	8011	359	13	0	2116	0	JMJD1C	10	64957253	Frame_Shift_Ins	INS	-	TCGA-KN-8424-01A-11D-2310-10	33818552	64957253	70577494	53	2833											
HPSE2	60495	ucsc.edu	37	chr10	100401630	100401630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattttcctaatctggtcagAgagtgtgtctaacaggcgag	11	7	3	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	100401630	A	G	100401630	3	3	39	1	0	0	0	0	1	0	0	0	7403	304	11	2	768	2	HPSE2	10	100401630	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	35444377	100401630	35133117	54	2834											
CYP2E1	1571	hgsc.bcm.edu	37	chr10	135346309	135346309	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagggtgaaggagcaccaTcaatctctggaccccaactg	11	11	2	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	135346309	T	C	135346309	2	2	39	1	0	0	0	0	0	0	0	1	4201	1432	50	4		4	CYP2E1	10	135346309	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	34944679	135346309	188438	55	2835											
PKP3	11187	mdanderson.org	37	chr11	397063	397063	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctcgctgcggctggggCccgggggcctggacgaccgc	19	15	0	0	rs113852684	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	397063	C	A	397063	3	1	39	1	0	0	0	0	1	0	0	0	12066	739	26	5	572	5	PKP3	11	397063	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10		397063	134609453	56	2836											
DNHD1	144132	bcgsc.ca	37	chr11	6592054	6592054	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcccagcttgcggaaaggCgactgcggcaacgcctagtg	15	13	0	0	rs80197979		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	6592054	C	T	6592054	4	4	39	1	0	0	0	0	0	1	0	0	4705	760	27	1	13479	1	DNHD1	11	6592054	Nonsense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	6194991	6592054	128414462	57	2837											
USP28	57646	bcgsc.ca	37	chr11	113685956	113685956	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtcttaacaaaatttaTctcctcatctgtgactgttc	5	10	4	1	rs141617594		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	113685956	T	C	113685956	3	2	39	1	0	0	0	0	1	0	0	0	17164	1435	50	4	1669	4	USP28	11	113685956	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	107093902	113685956	21320560	58	2838											
SLC4A8	9498	broad.mit.edu	37	chr12	51868953	51868954	+	Frame_Shift_Ins	INS	-	-	A													ttcatcctctcaagcaccttINSaaagacgtttaagacgagcc					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	51868954	-	A	51868953	7	5	39	1	0	1	1	0	0	0	0	0	14757	1764	61	0	2197	0	SLC4A8	12	51868953	Frame_Shift_Ins	INS	-	TCGA-KN-8424-01A-11D-2310-10		51868953	81982942	59	2839											
ACVRL1	94	ucsc.edu	37	chr12	52306933	52306933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgacctgcacgtgtgagAgcccacattgcaaggggcct	14	11	0	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	52306933	A	G	52306933	3	3	39	1	0	0	0	0	1	0	0	0	225	304	11	2	118	2	ACVRL1	12	52306933	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	437980	52306933	81544962	60	2840											
MON2	23041	hgsc.bcm.edu;mdanderson.org	37	chr12	62954344	62954344	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcaaaaacaatgaagtAtctctggctgctctgaaaag	8	9	3	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	62954344	A	T	62954344	2	4	39	1	0	0	0	0	0	0	0	1	9778	436	16	5		5	MON2	12	62954344	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	10647411	62954344	70897551	61	2841											
KRR1	11103	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	75895756	75895756	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atttgccttcaaaaagtattCaccactagccaattctttat	3	10	3	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	75895756	C	T	75895756	3	4	39	1	0	0	0	0	1	0	0	0	8507	835	29	4	301	4	KRR1	12	75895756	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	12941412	75895756	57956139	62	2842											
CCDC62	84660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	123282632	123282632	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgtcaatatctatgacagAtttatgtaaaacaacagagt	6	5	2	3	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	123282632	A	T	123282632	3	4	39	1	0	0	0	0	1	0	0	0	2860	347	12	5	892	5	CCDC62	12	123282632	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	47386876	123282632	10569263	63	2843											
SCFD1	23256	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr14	31107412	31107412	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaaactggaagatattgcaAatgcagcgttagcagctagt	11	6	0	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	31107412	A	G	31107412	3	3	39	1	0	0	0	0	1	0	0	0	13985	14	1	4	412	4	SCFD1	14	31107412	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		31107412	76242128	64	2844											
JAG2	3714	mdanderson.org	37	chr14	105609335	105609335	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtggccccccggccgctcAatggggttgcggatggggtt	17	11	1	0	rs10149229	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	105609335	A	G	105609335	2	3	39	1	0	0	0	0	0	0	0	1	7996	126	5	4		4	JAG2	14	105609335	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	74501923	105609335	1740205	65	2845											
CACNA1H	8912	broad.mit.edu	37	chr16	1265531	1265531	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccggccctagtgctgaagCtgctgaagatggctacgggc	14	12	0	3	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	1265531	C	T	1265531	2	4	39	1	0	0	0	0	0	0	0	1	2570	796	28	4		4	CACNA1H	16	1265531	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		1265531	89089222	66	2846											
CACNA1H	8912	mdanderson.org	37	chr16	1268485	1268485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccccaggagagtccgggCgccagggacgccccaaacct	13	16	0	1	rs2738891	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	1268485	C	T	1268485	2	4	39	1	0	0	0	0	0	0	0	1	2570	755	27	1		1	CACNA1H	16	1268485	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10	2954	1268485	89086268	67	2847											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7574017	7574017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctcggaacatctcgaagCgctcacgcccacggatctgc	10	16	4	0	rs121912664		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	7574017	C	T	7574017	3	4	39	1	0	0	0	0	1	0	0	0	16486	768	27	1	179	1	TP53	17	7574017	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10		7574017	73621193	68	2848											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcgctcatggtgggggCagcgcctcacaacctccgtc	13	15	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	7578403	C	A	7578403	3	1	39	1	0	0	0	0	1	0	0	0	16486	710	25	5	771	5	TP53	17	7578403	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	4386	7578403	73616807	69	2849											
LLGL2	3993	broad.mit.edu;hgsc.bcm.edu	37	chr17	73566231	73566231	+	Frame_Shift_Del	DEL	T	T	-													gcagtgtcagcccccggctgTggtcacctccttggccctgc					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		-	73566231	T	-	73566231	7	5	39	1	0	1	0	1	0	0	0	0	8898	1696	59	0	1858	0	LLGL2	17	73566231	Frame_Shift_Del	DEL	T	TCGA-KN-8424-01A-11D-2310-10	65987828	73566231	7628979	70	2850	80	2									
LLGL2	3993	bcgsc.ca	37	chr17	73566232	73566232	+	Frame_Shift_Del	DEL	T	T	-													cagtgtcagcccccggctgtGgtcacctccttggccctgca					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		-	73566232	T	-	73566232	7	5	39	1	0	1	0	1	0	0	0	0	8898	1335	47	0	1859	0	LLGL2	17	73566232	Frame_Shift_Del	DEL	T	TCGA-KN-8424-01A-11D-2310-10	1	73566232	7628978	71	2851	80	2									
UNC13D	201294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	73826730	73826730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggccgcctgcagctccaggtCcctctgcagagcctgggaac	13	16	1	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	73826730	C	T	73826730	3	4	39	1	0	0	0	0	1	0	0	0	17093	855	30	3	654	3	UNC13D	17	73826730	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	260498	73826730	7368480	72	2852											
ZBTB7C	201501	mdanderson.org	37	chr18	45555829	45555829	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcccgaacagcttcatctgTgtctcctcgaactgccgctc	8	17	3	0	rs7231151	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	45555829	T	C	45555829	2	2	39	1	0	0	0	0	0	0	0	1	17660	1683	59	2		2	ZBTB7C	18	45555829	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10		45555829	32521419	73	2853											
NEDD4L	23327	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	56063457	56063457	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagatttacgagagaaacttCtcatggccgtggaaaatgct	10	7	1	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	56063457	C	T	56063457	3	4	39	1	0	0	0	0	1	0	0	0	10390	913	32	4	3034	4	NEDD4L	18	56063457	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	10507628	56063457	22013791	74	2854											
NFATC1	4772	mdanderson.org	37	chr18	77171061	77171061	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctccagacccgcgtccccTtgcaacaagaggaagtacag	9	15	0	2	rs2230112	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	77171061	T	G	77171061	2	3	39	1	0	0	0	0	0	0	0	1	10440	1596	56	5		5	NFATC1	18	77171061	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	21107604	77171061	906187	75	2855											
C19orf26	255057	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	1236022	1236022	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtccagtggcattgtcccaCgacgtcgtcagggctactgt	12	13	1	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	1236022	C	T	1236022	2	4	39	1	0	0	0	0	0	0	0	1	1934	523	19	1		1	C19orf26	19	1236022	Silent	SNP	C	TCGA-KN-8424-01A-11D-2310-10		1236022	57892961	76	2856											
ARHGEF18	23370	broad.mit.edu	37	chr19	7504944	7504944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcataaaaacggcgcaGcccagcctggcgccgcgccg	14	16	0	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	7504944	G	A	7504944	3	1	39	1	0	0	0	0	1	0	0	0	903	971	34	4	120	4	ARHGEF18	19	7504944	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	6268922	7504944	51624039	77	2857											
MUC16	94025	mdanderson.org	37	chr19	9018476	9018476	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagtggtgttgaacttcctGgagccagggcgatgcatgtc	14	9	1	1	rs112059772	bycluster;by1000genomes	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	9018476	G	A	9018476	2	1	39	1	0	0	0	0	0	0	0	1	10051	1335	47	4		4	MUC16	19	9018476	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	1513532	9018476	50110507	78	2858											
COL5A3	50509	mdanderson.org	37	chr19	10077419	10077419	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccatgcagctcggcaggggCaccctgggcgtaggggatgg	18	12	0	0	rs3745584	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	10077419	C	G	10077419	3	3	39	1	0	0	0	0	1	0	0	0	3727	710	25	5	795	5	COL5A3	19	10077419	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	1058943	10077419	49051564	79	2859											
KANK2	25959	mdanderson.org	37	chr19	11303943	11303943	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcccaagtcccgttctcgAacccaggtgcccacactccg	8	18	1	0	rs3745681	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	11303943	A	G	11303943	2	3	39	1	0	0	0	0	0	0	0	1	8038	233	9	4		4	KANK2	19	11303943	Silent	SNP	A	TCGA-KN-8424-01A-11D-2310-10	1226524	11303943	47825040	80	2860											
GDF15	9518	mdanderson.org	37	chr19	18499238	18499238	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgggacgtgacacgaccGctgcggcgtcagctcagcct	14	14	2	1	rs1804826	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	18499238	G	T	18499238	2	4	39	1	0	0	0	0	0	0	0	1	6369	1074	38	5		5	GDF15	19	18499238	Silent	SNP	G	TCGA-KN-8424-01A-11D-2310-10	7195295	18499238	40629745	81	2861											
CIC	23152	ucsc.edu	37	chr19	42791707	42791707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaatgcagcgggagaaggAccacatccggcggcccatga	13	11	0	2	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	42791707	A	G	42791707	3	3	39	1	0	0	0	0	1	0	0	0	3453	275	10	2	611	2	CIC	19	42791707	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	24292469	42791707	16337276	82	2862											
SIGLEC1	6614	broad.mit.edu;bcgsc.ca	37	chr20	3669873	3669873	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcttacaaacacgcctccTtctgcaaggcccggagtgga	10	14	1	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	3669873	T	C	3669873	3	2	39	1	0	0	0	0	1	0	0	0	14403	1623	56	2	138	2	SIGLEC1	20	3669873	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10		3669873	59355647	83	2863											
SGK2	10110	bcgsc.ca	37	chr20	42199308	42199308	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctggagccccgggccaggTtctacgctgctgaggtggcc	15	14	1	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	42199308	T	C	42199308	3	2	39	1	0	0	0	0	1	0	0	0	14306	1725	60	2	614	2	SGK2	20	42199308	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	38529435	42199308	20826212	84	2864											
TMPRSS15	5651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr21	19770214	19770214	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	actcaaattgtaaaactcttGagttcttatattcattcttc	3	8	5	1	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	19770214	G	T	19770214	4	4	39	1	0	0	0	0	0	1	0	0	16350	1294	45	5	2825	5	TMPRSS15	21	19770214	Nonsense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10		19770214	28359681	85	2865											
OSM	5008	broad.mit.edu	37	chr22	30661055	30661055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttctggagctggccaaggAgcacgcggtactctttcgag	14	11	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	30661055	A	G	30661055	3	3	39	1	0	0	0	0	1	0	0	0	11370	304	11	2	653	2	OSM	22	30661055	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		30661055	20643511	86	2866											
BRD1	23774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	50187922	50187922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccaggtgggctctgttggCggggtccagcaacctgtcca	15	13	1	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		T	50187922	C	T	50187922	3	4	39	1	0	0	0	0	1	0	0	0	1509	768	27	1	1085	1	BRD1	22	50187922	Missense_Mutation	SNP	C	TCGA-KN-8424-01A-11D-2310-10	19526867	50187922	1116644	87	2867											
SHROOM2	357	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	9905226	9905226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatggtgcccatcaagAtcgtgcactcggagagccag	13	10	1	4	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	9905226	A	G	9905226	3	3	39	1	0	0	0	0	1	0	0	0	14392	333	12	4	3666	4	SHROOM2	23	9905226	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10		9905226	145365334	88	2868											
WWC3	55841	mdanderson.org	37	chrX	10085674	10085674	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacacggggtccccggggaTggggaagggccgcacgagcg	19	13	0	0	rs6530368	byfrequency	TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	10085674	T	C	10085674	2	2	39	1	0	0	0	0	0	0	0	1	17519	1461	51	4		4	WWC3	23	10085674	Silent	SNP	T	TCGA-KN-8424-01A-11D-2310-10	180448	10085674	145184886	89	2869											
RPGR	6103	broad.mit.edu	37	chrX	38145385	38145385	+	Frame_Shift_Del	DEL	T	T	-													ctccttcctcctcttcccccTcccattctccttcctcctct					novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		-	38145385	T	-	38145385	7	5	39	1	0	1	0	1	0	0	0	0	13643	1551	54	0	1154	0	RPGR	23	38145385	Frame_Shift_Del	DEL	T	TCGA-KN-8424-01A-11D-2310-10	28059711	38145385	117125175	90	2870											
SLC16A2	6567	mdanderson.org	37	chrX	73641569	73641569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtagcccagagccggagTctgagccggagcctgagccc	16	13	1	3	rs6647476		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	73641569	T	C	73641569	3	2	39	1	0	0	0	0	1	0	0	0	14506	1667	58	2	321	2	SLC16A2	23	73641569	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	35496184	73641569	81628991	91	2871											
BRS3	680	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	135570529	135570529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacagttccaaatattttcAtcaccagcctggcttttgga	6	10	2	0	novel		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		G	135570529	A	G	135570529	3	3	39	1	0	0	0	0	1	0	0	0	1530	217	8	4	258	4	BRS3	23	135570529	Missense_Mutation	SNP	A	TCGA-KN-8424-01A-11D-2310-10	61928960	135570529	19700031	92	2872											
ABCD1	215	mdanderson.org	37	chrX	153008476	153008476	+	Missense_Mutation	SNP	T	T	C													gtgactggaaggacgtcctgTcgggtggcgagaagcagaga					rs201774661		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		C	153008476	T	C	153008476	3	2	39	1	0	0	0	0	1	0	0	0	60	1667	58	2	1846	2	ABCD1	23	153008476	Missense_Mutation	SNP	T	TCGA-KN-8424-01A-11D-2310-10	17437947	153008476	2262084	93	2873	81	2									
ABCD1	215	mdanderson.org	37	chrX	153008483	153008483	+	Missense_Mutation	SNP	G	G	A													gaaggacgtcctgtcgggtgGcgagaagcagagaatcggca					rs78993751		TCGA-KN-8424-01A-11D-2310-10	TCGA-KN-8424-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1e8ae8dd-74c1-44d5-a74e-bfdce801c736	5e382ff9-b2b7-49ea-9ae5-b1ae7ab5b910		A	153008483	G	A	153008483	3	1	39	1	0	0	0	0	1	0	0	0	60	1203	42	3	1853	3	ABCD1	23	153008483	Missense_Mutation	SNP	G	TCGA-KN-8424-01A-11D-2310-10	7	153008483	2262077	94	2874	81	2									
RPL11	6135	hgsc.bcm.edu	37	chr1	24021261	24021261	+	Frame_Shift_Del	DEL	T	T	-													atgacccaagcattggtatcTacggcctggacttctatgtg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		-	24021261	T	-	24021261	7	5	40	1	0	1	0	1	0	0	0	0	13652	1522	53	0	390	0	RPL11	1	24021261	Frame_Shift_Del	DEL	T	TCGA-KN-8425-01A-11D-2310-10		24021261	225229360	1	2875	82	2									
RPL11	6135	bcgsc.ca	37	chr1	24021262	24021262	+	Frame_Shift_Del	DEL	T	T	-													tgacccaagcattggtatctAcggcctggacttctatgtgg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		-	24021262	T	-	24021262	7	5	40	1	0	1	0	1	0	0	0	0	13652	391	14	0	391	0	RPL11	1	24021262	Frame_Shift_Del	DEL	T	TCGA-KN-8425-01A-11D-2310-10	1	24021262	225229359	2	2876	82	2									
HRNR	388697	broad.mit.edu	37	chr1	152186038	152186038	+	Frame_Shift_Del	DEL	A	A	-													tgaccaaagacagaagagtgAcccaagcgagactcatatgg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		-	152186038	A	-	152186038	7	5	40	1	0	1	0	1	0	0	0	0	7417	262	10	0	489	0	HRNR	1	152186038	Frame_Shift_Del	DEL	A	TCGA-KN-8425-01A-11D-2310-10	128164776	152186038	97064583	3	2877	83	3									
HRNR	388697	broad.mit.edu	37	chr1	152186041	152186042	+	Frame_Shift_Ins	INS	-	-	GG													caaagacagaagagtgacccINSaagcgagactcatatgggcc					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		GG	152186042	-	GG	152186041	7	5	40	1	0	1	1	0	0	0	0	0	7417	593	21	0	492	0	HRNR	1	152186041	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	3	152186041	97064580	4	2878	83	3									
HRNR	388697	broad.mit.edu	37	chr1	152186047	152186047	+	Frame_Shift_Del	DEL	A	A	-													acagaagagtgacccaagcgAgactcatatgggccacggct					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		-	152186047	A	-	152186047	7	5	40	1	0	1	0	1	0	0	0	0	7417	291	11	0	498	0	HRNR	1	152186047	Frame_Shift_Del	DEL	A	TCGA-KN-8425-01A-11D-2310-10	6	152186047	97064574	5	2879	83	3									
TGFB2	7042	bcgsc.ca	37	chr1	218520179	218520179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgatccgcgggcagatcctgAgcaagctgaagctcaccagt	12	13	1	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	218520179	A	G	218520179	3	3	40	1	0	0	0	0	1	0	0	0	15922	304	11	2	138	2	TGFB2	1	218520179	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	66334132	218520179	30730442	6	2880											
PLB1	151056	bcgsc.ca	37	chr2	28812354	28812354	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgagagtgggcgatatgAcacaagggaagattttactg	14	4	0	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	28812354	A	G	28812354	3	3	40	1	0	0	0	0	1	0	0	0	12104	275	10	2	1992	2	PLB1	2	28812354	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		28812354	214387019	7	2881											
PSD4	23550	broad.mit.edu	37	chr2	113940985	113940985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatcagtgggcattgtaccCctccattccctgtgcccatc	7	16	1	0	rs148062987	byfrequency;alternate_allele	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	113940985	C	T	113940985	3	4	40	1	0	0	0	0	1	0	0	0	12738	623	22	3	954	3	PSD4	2	113940985	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	85128631	113940985	129258388	8	2882											
SLC16A14	151473	bcgsc.ca	37	chr2	230911292	230911292	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attcctccagccgtactctgCgcacaggtacttcagcagca	8	15	2	0	rs62191755	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	230911292	C	A	230911292	3	1	40	1	0	0	0	0	1	0	0	0	14505	768	27	5	990	5	SLC16A14	2	230911292	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	116970307	230911292	12288081	9	2883											
DOCK3	1795	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	51251628	51251628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatcccatgatatttaataGgggattggcaattacaagaa	8	5	0	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	51251628	G	A	51251628	3	1	40	1	0	0	0	0	1	0	0	0	4725	1000	35	4	1256	4	DOCK3	3	51251628	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		51251628	146770802	10	2884											
CNTN3	5067	broad.mit.edu	37	chr3	74570232	74570232	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaagcagccaatgaatgaaAgcaggatcaactgtttccat	8	9	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	74570232	A	G	74570232	3	3	40	1	0	0	0	0	1	0	0	0	3671	72	3	2	3142	2	CNTN3	3	74570232	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	23318604	74570232	123452198	11	2885											
ZBTB20	26137	broad.mit.edu	37	chr3	114070436	114070436	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttccgactgcgagacccgTagcacgccgctgtacatgaa	11	14	0	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	114070436	T	C	114070436	2	2	40	1	0	0	0	0	0	0	0	1	17634	1625	57	2		2	ZBTB20	3	114070436	Silent	SNP	T	TCGA-KN-8425-01A-11D-2310-10	39500204	114070436	83951994	12	2886											
ARHGAP24	83478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	86863259	86863259	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggatactgttcgttatgaGaagagatatgggaaccgtct	13	5	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	86863259	G	T	86863259	3	4	40	1	0	0	0	0	1	0	0	0	875	933	33	5	562	5	ARHGAP24	4	86863259	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		86863259	104291017	13	2887											
AFF1	4299	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	87967367	87967367	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattagagagaaggaaagaCgcaaccaggaagcccaccaa	11	9	0	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	87967367	C	T	87967367	3	4	40	1	0	0	0	0	1	0	0	0	356	536	19	1	115	1	AFF1	4	87967367	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	1104108	87967367	103186909	14	2888											
IRF2	3660	broad.mit.edu	37	chr4	185339717	185339717	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgttctgataggggcagCattcggtagaccctgaaggc	15	10	1	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	185339717	C	A	185339717	3	1	40	1	0	0	0	0	1	0	0	0	7889	710	25	5	740	5	IRF2	4	185339717	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	97372350	185339717	5814559	15	2889											
ADAMTS12	81792	broad.mit.edu	37	chr5	33881393	33881393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagaaatccttgattgaccGtcaagttaaaaaacaggtcc	7	8	1	3	rs201373627		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	33881393	G	A	33881393	3	1	40	1	0	0	0	0	1	0	0	0	257	1145	40	1	4556	1	ADAMTS12	5	33881393	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		33881393	147033867	16	2890											
ZNF391	346157	broad.mit.edu	37	chr6	27368216	27368216	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagactataaaaacgaaggcCaattatcaaggcaaacaaaa	6	7	1	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	27368216	C	T	27368216	4	4	40	1	0	0	0	0	0	1	0	0	17984	595	21	4	69	4	ZNF391	6	27368216	Nonsense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10		27368216	143746851	17	2891											
HLA-A	3105	mdanderson.org	37	chr6	29912333	29912333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattgctggcctggttctcCttggagctgtgatcactgga	12	10	3	1	rs3179982	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	29912333	C	T	29912333	3	4	40	1	0	0	0	0	1	0	0	0	7253	681	24	4	970	4	HLA-A	6	29912333	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	2544117	29912333	141202734	18	2892											
HLA-B	3106	mdanderson.org	37	chr6	31323262	31323262	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttggtcctcgccatcccGctgccaggtcagtgtgatct	11	13	2	1	rs77665001	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	31323262	G	A	31323262	3	1	40	1	0	0	0	0	1	0	0	0	7254	1086	38	1	377	1	HLA-B	6	31323262	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	1410929	31323262	139791805	19	2893											
GLP1R	2740	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	39040661	39040661	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcactgcaccaggaactAcatccacctgaacctgtttg	7	15	0	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	39040661	A	G	39040661	3	3	40	1	0	0	0	0	1	0	0	0	6508	391	14	2	555	2	GLP1R	6	39040661	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	7717399	39040661	132074406	20	2894											
PHF3	23469	ucsc.edu;bcgsc.ca	37	chr6	64419126	64419126	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtggaaaaaataaaagcatCaggaaccaaggtgaggaaaa	11	4	1	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	64419126	C	T	64419126	3	4	40	1	0	0	0	0	1	0	0	0	11916	838	29	4	3841	4	PHF3	6	64419126	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	25378465	64419126	106695941	21	2895											
GJA10	84694	hgsc.bcm.edu;bcgsc.ca	37	chr6	90605153	90605153	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccaatgggaaaaaggactgGtctgagaaggatcagcatag	13	6	2	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	90605153	G	T	90605153	3	4	40	1	0	0	0	0	1	0	0	0	6457	1270	44	5	968	5	GJA10	6	90605153	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	26186027	90605153	80509914	22	2896											
CDC40	51362	broad.mit.edu	37	chr6	110528751	110528751	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agataatcatcaagtgtctgCtaaatatattggttctgtag	8	5	4	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	110528751	C	A	110528751	3	1	40	1	0	0	0	0	1	0	0	0	3099	797	28	5	463	5	CDC40	6	110528751	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	19923598	110528751	60586316	23	2897											
FAM184A	79632	broad.mit.edu	37	chr6	119281278	119281278	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaattctttcagaatgtgAagtaccgggcaaaccactcc	7	12	2	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	119281278	A	G	119281278	3	3	40	1	0	0	0	0	1	0	0	0	5555	246	9	4	13	4	FAM184A	6	119281278	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	8752527	119281278	51833789	24	2898											
TCP10L2	401285	mdanderson.org	37	chr6	167592606	167592606	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagacggcagcagccggagtTgctggtgagcagggtagggg	20	8	0	2	rs201866116	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	167592606	T	A	167592606	2	1	40	1	0	0	0	0	0	0	0	1	15816	1799	63	5		5	TCP10L2	6	167592606	Silent	SNP	T	TCGA-KN-8425-01A-11D-2310-10	48311328	167592606	3522461	25	2899											
URGCP	55665	broad.mit.edu	37	chr7	43917145	43917146	+	Frame_Shift_Ins	INS	-	-	C													agtgggcaaaacgcctctggINScctgccggcagcctccctgc					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	43917146	-	C	43917145	7	5	40	1	0	1	1	0	0	0	0	0	17132	1190	42	0	882	0	URGCP	7	43917145	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10		43917145	115221518	26	2900											
TRRAP	8295	broad.mit.edu	37	chr7	98522828	98522828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaaatgcttcctggtgGccatgatgagcctggaggac	13	9	1	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	98522828	G	T	98522828	3	4	40	1	0	0	0	0	1	0	0	0	16706	1203	42	5	2999	5	TRRAP	7	98522828	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	54605683	98522828	60615835	27	2901											
CLCN1	1180	broad.mit.edu	37	chr7	143047474	143047475	+	Frame_Shift_Ins	INS	-	-	G													tggctgacagattgaggcctINSgggagcaggagcagctgagc					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	143047475	-	G	143047474	7	5	40	1	0	1	1	0	0	0	0	0	3491	1580	55	0	2495	0	CLCN1	7	143047474	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	44524646	143047474	16091189	28	2902											
PCMTD1	115294	mdanderson.org	37	chr8	52732959	52732959	+	Silent	SNP	G	G	A													gcttttaaagattcagggagGggcagcttcatgattttttc					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	52732959	G	A	52732959	2	1	40	1	0	0	0	0	0	0	0	1	11665	1219	43	3		3	PCMTD1	8	52732959	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10		52732959	93631063	29	2903	84	2	1	34		3	2	23	N	G_C	4.690306e-05
PCMTD1	115294	mdanderson.org	37	chr8	52732961	52732961	+	Missense_Mutation	SNP	G	G	T													ttttaaagattcagggagggGcagcttcatgattttttctc					rs399592	bycluster;byfrequency;bysubmitter;alternate_allele	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	52732961	G	T	52732961	3	4	40	1	0	0	0	0	1	0	0	0	11665	1203	42	5	53	5	PCMTD1	8	52732961	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	2	52732961	93631061	30	2904	84	2	1	34		3	2	23	N	G_C	4.690306e-05
PCMTD1	115294	mdanderson.org	37	chr8	52732981	52732981	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagcttcatgattttttctCtcagtaaattttgaggtggc	9	7	3	2	rs201786115		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	52732981	C	G	52732981	3	3	40	1	0	0	0	0	1	0	0	0	11665	913	32	5	73	5	PCMTD1	8	52732981	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	20	52732981	93631041	31	2905			1	34		3	2	23	N	G_C	4.690306e-05
ARFGEF1	10565	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	68152453	68152453	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttataccttccaggcaaaGagaggctacttcagtatcat	7	10	3	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	68152453	G	A	68152453	3	1	40	1	0	0	0	0	1	0	0	0	854	942	33	4	2706	4	ARFGEF1	8	68152453	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	15419472	68152453	78211569	32	2906											
PABPC1	26986	mdanderson.org	37	chr8	101721899	101721899	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaactgctttagtggcttCttctggggaggagaaacata	12	6	2	1	rs142985461	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	101721899	C	A	101721899	4	1	40	1	0	0	0	0	0	1	0	0	11442	922	32	5	905	5	PABPC1	8	101721899	Nonsense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	33569446	101721899	44642123	33	2907											
BAI1	575	broad.mit.edu	37	chr8	143562971	143562971	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggagatctctcaggacgggAccagctacagtggggacctg	15	10	2	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	143562971	A	G	143562971	3	3	40	1	0	0	0	0	1	0	0	0	1302	275	10	2	2067	2	BAI1	8	143562971	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	41841072	143562971	2801051	34	2908											
GTF3C5	9328	broad.mit.edu	37	chr9	135929828	135929828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacttgccggtcaaagcaaAgcgcagcacctacaactaca	8	13	1	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	135929828	A	G	135929828	3	3	40	1	0	0	0	0	1	0	0	0	6934	72	3	2	1048	2	GTF3C5	9	135929828	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		135929828	5283603	35	2909											
NOTCH1	4851	broad.mit.edu	37	chr9	139417353	139417354	+	Frame_Shift_Ins	INS	-	-	GA													cccgtggggcggcaggtgccINScccgttctggcagggcgagg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		GA	139417354	-	GA	139417353	7	5	40	1	0	1	1	0	0	0	0	0	10626	623	22	0	7100	0	NOTCH1	9	139417353	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	3487525	139417353	1796078	36	2910	85	2									
NOTCH1	4851	broad.mit.edu	37	chr9	139417355	139417356	+	Frame_Shift_Ins	INS	-	-	T													cgtggggcggcaggtgccccINScgttctggcagggcgagggg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	139417356	-	T	139417355	7	5	40	1	0	1	1	0	0	0	0	0	10626	623	22	0	7102	0	NOTCH1	9	139417355	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	2	139417355	1796076	37	2911	85	2									
OR10A5	144124	mdanderson.org	37	chr11	6867588	6867588	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatactcgcattgctgctgcTatcctcaagatcccatcagc	6	14	2	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	6867588	T	C	6867588	2	2	40	1	0	0	0	0	0	0	0	1	10972	1509	53	2		2	OR10A5	11	6867588	Silent	SNP	T	TCGA-KN-8425-01A-11D-2310-10		6867588	128138928	38	2912											
ABCC8	6833	broad.mit.edu	37	chr11	17483365	17483365	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcggtgtcttgaagaagAtgtatctctgtggggcacat	12	9	2	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	17483365	A	G	17483365	3	3	40	1	0	0	0	0	1	0	0	0	58	333	12	4	4298	4	ABCC8	11	17483365	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	10615777	17483365	117523151	39	2913											
C2CD3	26005	broad.mit.edu	37	chr11	73820090	73820090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaaagtacctttttctgtgGagttttctttacataaattt	5	6	3	0	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	73820090	G	T	73820090	3	4	40	1	0	0	0	0	1	0	0	0	2174	1174	41	5	4020	5	C2CD3	11	73820090	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	56336725	73820090	61186426	40	2914											
KIAA1377	57562	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	101793446	101793446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagcaacaaaaaatatgtcGaaatcgagcacgtaaatatt	7	7	0	0	rs142032267		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	101793446	G	A	101793446	3	1	40	1	0	0	0	0	1	0	0	0	8288	1058	37	1	209	1	KIAA1377	11	101793446	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	27973356	101793446	33213070	41	2915											
ITGA5	3678	broad.mit.edu	37	chr12	54812840	54812840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccgagagtactgctgggGcctccgcgtctaagttgaag	14	12	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	54812840	G	T	54812840	3	4	40	1	0	0	0	0	1	0	0	0	7940	1203	42	5	3126	5	ITGA5	12	54812840	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		54812840	79039055	42	2916											
FBXO21	23014	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	117624289	117624289	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agctatggcttaccttccttCcatatttaggatacacacca	5	12	0	0	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	117624289	C	A	117624289	4	1	40	1	0	0	0	0	0	1	0	0	5782	864	30	5	1463	5	FBXO21	12	117624289	Nonsense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	62811449	117624289	16227606	43	2917											
TMEM30B	161291	mdanderson.org	37	chr14	61747644	61747644	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcgcacaccgagcagttAccggtgcccgggtcgcctgt	15	15	0	0	rs3196765		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	61747644	A	G	61747644	2	3	40	1	0	0	0	0	0	0	0	1	16258	378	14	2		2	TMEM30B	14	61747644	Silent	SNP	A	TCGA-KN-8425-01A-11D-2310-10		61747644	45601896	44	2918											
PLEKHG3	26030	broad.mit.edu	37	chr14	65209023	65209024	+	Frame_Shift_Ins	INS	-	-	C													gaacaaggtctaccagctggINScccgccagtacagcctccgg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	65209024	-	C	65209023	7	5	40	1	0	1	1	0	0	0	0	0	12150	1203	42	0	2670	0	PLEKHG3	14	65209023	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	3461379	65209023	42140517	45	2919											
BAG5	9529	bcgsc.ca	37	chr14	104026390	104026390	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacaagtttccaaggacgTtccagacggctttatgggat	11	9	0	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	104026390	T	C	104026390	3	2	40	1	0	0	0	0	1	0	0	0	1294	1725	60	2	235	2	BAG5	14	104026390	Missense_Mutation	SNP	T	TCGA-KN-8425-01A-11D-2310-10	38817367	104026390	3323150	46	2920											
DNAJC17	55192	hgsc.bcm.edu	37	chr15	41060179	41060179	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcctgctgcatccgtgCgatcagctgttgccgctcgg	12	14	2	0	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	41060179	C	T	41060179	3	4	40	1	0	0	0	0	1	0	0	0	4673	768	27	1	44	1	DNAJC17	15	41060179	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10		41060179	61471213	47	2921											
CEP152	22995	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	49081131	49081131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgaagtgattcagaatgaTgaaggtccaccagctgctgc	12	8	1	5	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	49081131	T	C	49081131	3	2	40	1	0	0	0	0	1	0	0	0	3277	1464	51	4	3996	4	CEP152	15	49081131	Missense_Mutation	SNP	T	TCGA-KN-8425-01A-11D-2310-10	8020952	49081131	53450261	48	2922											
ACAN	176	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	89383275	89383275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attacagagccatctctacaCgctacaccctcgactttgac	5	15	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	89383275	C	T	89383275	3	4	40	1	0	0	0	0	1	0	0	0	117	536	19	1	497	1	ACAN	15	89383275	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	40302144	89383275	13148117	49	2923											
CRAMP1L	57585	broad.mit.edu	37	chr16	1705979	1705979	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagaactgtacactgacAccgctgccgggcgtggctcg	15	13	0	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	1705979	A	G	1705979	2	3	40	1	0	0	0	0	0	0	0	1	3875	146	6	2		2	CRAMP1L	16	1705979	Silent	SNP	A	TCGA-KN-8425-01A-11D-2310-10		1705979	88648774	50	2924											
MAPK3	5595	hgsc.bcm.edu	37	chr16	30128095	30128095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccatggcgaaggtgaagGgctcctcggccactggctgg	16	12	0	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	30128095	G	T	30128095	3	4	40	1	0	0	0	0	1	0	0	0	9356	1232	43	5	109	5	MAPK3	16	30128095	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	28422116	30128095	60226658	51	2925											
RAP1GAP2	23108	bcgsc.ca	37	chr17	2901629	2901629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttacatgcctacatcgtcGtgcaggtcgagaccccaggc	10	14	1	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	2901629	G	A	2901629	3	1	40	1	0	0	0	0	1	0	0	0	13130	1145	40	1	1213	1	RAP1GAP2	17	2901629	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10		2901629	78293581	52	2926											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu	37	chr17	7793910	7793910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtgaggaggaatttggtTctgagcgagatgagtaccgg	16	5	1	4	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	7793910	T	C	7793910	3	2	40	1	0	0	0	0	1	0	0	0	3355	1783	62	4	526	4	CHD3	17	7793910	Missense_Mutation	SNP	T	TCGA-KN-8425-01A-11D-2310-10	4892281	7793910	73401300	53	2927											
ABCC3	8714	bcgsc.ca	37	chr17	48744970	48744970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgatgagtgagatcctgaAcggcatcaaggtgctgaagc	14	8	1	5	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	48744970	A	G	48744970	3	3	40	1	0	0	0	0	1	0	0	0	54	43	2	2	1533	2	ABCC3	17	48744970	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10	40951060	48744970	32450240	54	2928											
RPTOR	57521	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	78866565	78866565	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtgcgagacagcccgtGcacccccagacttcgttctg	10	17	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	78866565	G	T	78866565	3	4	40	1	0	0	0	0	1	0	0	0	13760	1319	46	5	2212	5	RPTOR	17	78866565	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	30121595	78866565	2328645	55	2929											
SLC39A3	29985	bcgsc.ca	37	chr19	2732787	2732787	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcccggccaggacggtgtAgcccagcaccaggaagagga	14	13	0	1	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	2732787	A	G	2732787	3	3	40	1	0	0	0	0	1	0	0	0	14717	420	15	2	41	2	SLC39A3	19	2732787	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		2732787	56396196	56	2930											
EBI3	10148	mdanderson.org	37	chr19	4237067	4237067	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctccccgccactgccacAatgagcctgggcaagtagca	10	15	1	1	rs4905	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	4237067	A	G	4237067	2	3	40	1	0	0	0	0	0	0	0	1	4920	117	5	4		4	EBI3	19	4237067	Silent	SNP	A	TCGA-KN-8425-01A-11D-2310-10	1504280	4237067	54891916	57	2931											
MUC16	94025	mdanderson.org	37	chr19	8999445	8999445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggcccagctcagtgatgCtgtgggtcagctggctcagc	16	11	3	1	rs112439001		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	8999445	C	T	8999445	3	4	40	1	0	0	0	0	1	0	0	0	10051	797	28	4	2909	4	MUC16	19	8999445	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	4762378	8999445	50129538	58	2932											
MUC16	94025	mdanderson.org	37	chr19	9012858	9012858	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtactgcaggttggtgatGgtgaagttgagggtgaatgg	18	3	0	4	rs111669353		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	9012858	G	A	9012858	2	1	40	1	0	0	0	0	0	0	0	1	10051	1335	47	4		4	MUC16	19	9012858	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10	13413	9012858	50116125	59	2933											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	9058813	9058813	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaccactggagatatcaCttttgttggctctgagaagc	12	8	2	3	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	9058813	C	G	9058813	3	3	40	1	0	0	0	0	1	0	0	0	10051	565	20	5	15218	5	MUC16	19	9058813	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10	45955	9058813	50070170	60	2934											
CEACAM1	634	mdanderson.org	37	chr19	43031318	43031318	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgcattggggtatattGtctctcgaccgctgtttgcg	14	8	1	0	rs199627333		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	43031318	G	A	43031318	3	1	40	1	0	0	0	0	1	0	0	0	3216	1377	48	4	1410	4	CEACAM1	19	43031318	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	33972505	43031318	16097665	61	2935			2	35		2	2	12	G		2.345181e-05
CEACAM1	634	mdanderson.org	37	chr19	43031329	43031329	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtatattgtctctcgaccGctgtttgcgggccctggggt	15	10	1	0	rs143477834	bycluster;byfrequency;by1000genomes	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	43031329	G	A	43031329	2	1	40	1	0	0	0	0	0	0	0	1	3216	1078	38	1		1	CEACAM1	19	43031329	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10	11	43031329	16097654	62	2936			2	35		2	2	12	G		2.345181e-05
MYH14	79784	broad.mit.edu	37	chr19	50805044	50805045	+	Frame_Shift_Ins	INS	-	-	C													gggtgaggaggatgctggggINScccgtgcccgccacaagatg					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	50805045	-	C	50805044	7	5	40	1	0	1	1	0	0	0	0	0	10111	1203	42	0	5750	0	MYH14	19	50805044	Frame_Shift_Ins	INS	-	TCGA-KN-8425-01A-11D-2310-10	7773715	50805044	8323939	63	2937											
NLRP9	338321	broad.mit.edu	37	chr19	56243852	56243852	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcggcacaaaactcttGgatacacagatgcatgaagg	11	9	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	56243852	G	A	56243852	4	1	40	1	0	0	0	0	0	1	0	0	10563	1357	47	4	1662	4	NLRP9	19	56243852	Nonsense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	5438808	56243852	2885131	64	2938											
SIRPA	140885	mdanderson.org	37	chr20	1895950	1895951	+	Missense_Mutation	DNP	CC	CC	GT													cgggtaacaactgtttcagaCctcacaaagagaaacaacat					rs149634649	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		GT	1895951	CC	GT	1895950	3	3	40	1	0	0	0	0	1	0	0	0	14430	506	18	5	291	5	SIRPA	20	1895950	Missense_Mutation	DNP	CC	TCGA-KN-8425-01A-11D-2310-10		1895950	61129570	65	2939											
EEF1A2	1917	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	62121830	62121830	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacccagcgcagccccccAcctgggaggtgaactgagca	13	15	0	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		C	62121830	A	C	62121830	5	2	40	1	0	0	0	0	0	0	1	0	4961	173	6	5	372	5	EEF1A2	20	62121830	Splice_Site	SNP	A	TCGA-KN-8425-01A-11D-2310-10	60225880	62121830	903690	66	2940											
CDC45	8318	broad.mit.edu	37	chr22	19496202	19496202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacttcatccaggctctggAcagcctctccaggtagcagg	10	14	4	0	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		G	19496202	A	G	19496202	3	3	40	1	0	0	0	0	1	0	0	0	3110	275	10	2	1355	2	CDC45	22	19496202	Missense_Mutation	SNP	A	TCGA-KN-8425-01A-11D-2310-10		19496202	31808364	67	2941											
CABIN1	23523	broad.mit.edu	37	chr22	24573681	24573681	+	Frame_Shift_Del	DEL	T	T	-													tgccaaagctggtcatccccTccgccgccaccaagttcccc					novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		-	24573681	T	-	24573681	7	5	40	1	0	1	0	1	0	0	0	0	2553	1551	54	0	6553	0	CABIN1	22	24573681	Frame_Shift_Del	DEL	T	TCGA-KN-8425-01A-11D-2310-10	5077479	24573681	26730885	68	2942											
NUDT10	170685	mdanderson.org	37	chrX	51075901	51075901	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtgcttccggagcgaGcgcgaggacgaggtcctgtt	16	11	0	0	rs2801627		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	51075901	G	A	51075901	2	1	40	1	0	0	0	0	0	0	0	1	10805	962	34	4		4	NUDT10	23	51075901	Silent	SNP	G	TCGA-KN-8425-01A-11D-2310-10		51075901	104194659	69	2943											
SLC25A5	292	mdanderson.org	37	chrX	118603729	118603729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttctgtccttctggcgcGgtaacctggccaatgtcatc	11	12	3	0	rs143413528	byfrequency	TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		A	118603729	G	A	118603729	3	1	40	1	0	0	0	0	1	0	0	0	14610	1116	39	1	223	1	SLC25A5	23	118603729	Missense_Mutation	SNP	G	TCGA-KN-8425-01A-11D-2310-10	67527828	118603729	36666831	70	2944											
PCDH11Y	83259	broad.mit.edu	37	chrY	4967267	4967267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgaattcagcctggatcgtCgtacaggcatgctgactgta	11	10	1	2	novel		TCGA-KN-8425-01A-11D-2310-10	TCGA-KN-8425-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	81bb13fc-f082-4c0b-8066-1729f11ef617	d0260f96-f7bd-41b1-b929-9451954cb3b4		T	4967267	C	T	4967267	3	4	40	1	0	0	0	0	1	0	0	0	11588	884	31	1	1690	1	PCDH11Y	24	4967267	Missense_Mutation	SNP	C	TCGA-KN-8425-01A-11D-2310-10		4967267	54406299	71	2945											
LOC440563	0	broad.mit.edu	37	chr1	13183837	13183837	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacacacgggagttcacggaGtgaggatccatcttgttggt	13	8	2	1	rs12566484	byhapmap	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	13183837	G	A	13183837	2	1	41	1	0	0	0	0	0	0	0	1	8949	1020	36	4		4	LOC440563	1	13183837	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10		13183837	236066784	1	2946											
UBXN11	91544	mdanderson.org	37	chr1	26608849	26608849	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccgggaccgggaccgggacTggggccgggaccgggaccgg	22	13	0	0	rs199707978		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	26608849	T	A	26608849	3	1	41	1	0	0	0	0	1	0	0	0	17019	1580	55	5	62	5	UBXN11	1	26608849	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	13425012	26608849	222641772	2	2947											
MED8	112950	broad.mit.edu	37	chr1	43850194	43850194	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccttgcgccttagagggAtagccagaatgaaacccagg	11	11	1	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	43850194	A	G	43850194	3	3	41	1	0	0	0	0	1	0	0	0	9530	333	12	4	76	4	MED8	1	43850194	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	17241345	43850194	205400427	3	2948											
SLC35D1	23169	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	67486077	67486077	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagccaactattgtagttGtaagagcagaattatactgc	8	7	0	2	rs143745141	alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	67486077	G	A	67486077	3	1	41	1	0	0	0	0	1	0	0	0	14679	1377	48	4	228	4	SLC35D1	1	67486077	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	23635883	67486077	181764544	4	2949											
CSDE1	7812	bcgsc.ca	37	chr1	115280678	115280683	+	In_Frame_Del	DEL	TTCAAA	TTCAAA	-													tccgtcggtccgatgatactTcaaattcaacatcatctaaa					novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	TTCAAA	TTCAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		-	115280683	TTCAAA	-	115280678	7	5	41	1	0	1	0	1	0	0	0	0	3960	1783	62	0	2249	0	CSDE1	1	115280678	In_Frame_Del	DEL	TTCAAA	TCGA-KN-8426-01A-11D-2310-10	47794601	115280678	133969943	5	2950											
SHC1	6464	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	154938971	154938971	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcctcctcatcccatgCtgagccatcaaagccagcca	5	18	2	1	rs150380146	alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	154938971	C	A	154938971	3	1	41	1	0	0	0	0	1	0	0	0	14368	797	28	5	768	5	SHC1	1	154938971	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	39658293	154938971	94311650	6	2951											
FMO3	2328	broad.mit.edu	37	chr1	171073025	171073025	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttcccatttcccgatgacTtccccaactttatgcacaac	3	16	0	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	171073025	T	C	171073025	3	2	41	1	0	0	0	0	1	0	0	0	6005	1609	56	2	238	2	FMO3	1	171073025	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	16134054	171073025	78177596	7	2952											
TMEM214	54867	ucsc.edu;bcgsc.ca	37	chr2	27263695	27263695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggcacttgccctgatatCccagcagtaggccctgcctt	10	15	0	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	27263695	C	T	27263695	3	4	41	1	0	0	0	0	1	0	0	0	16241	855	30	3	2126	3	TMEM214	2	27263695	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		27263695	215935678	8	2953											
IRS1	3667	ucsc.edu	37	chr2	227659840	227659840	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaggggttgatgagggggTgggggtgggggaggctgcgg	26	5	0	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	227659840	T	G	227659840	2	3	41	1	0	0	0	0	0	0	0	1	7901	1683	59	5		5	IRS1	2	227659840	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	200396145	227659840	15539533	9	2954											
IQCA1	79781	bcgsc.ca	37	chr2	237402454	237402454	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgctaatatttgagcaAgaattttctctcttcctttt	5	9	2	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	237402454	A	G	237402454	3	3	41	1	0	0	0	0	1	0	0	0	7863	72	3	2	2123	2	IQCA1	2	237402454	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	9742614	237402454	5796919	10	2955											
IGSF10	285313	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	151162874	151162874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agtcaaagggaaggagtttgGaagttgttgcttcttgaact	13	4	2	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	151162874	G	T	151162874	3	4	41	1	0	0	0	0	1	0	0	0	7658	1174	41	5	3036	5	IGSF10	3	151162874	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10		151162874	46859556	11	2956											
IGSF10	285313	broad.mit.edu	37	chr3	151165623	151165623	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgatagttgtgcctcttacTtgtgcttgaggtgtgttttc	11	8	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	151165623	T	C	151165623	3	2	41	1	0	0	0	0	1	0	0	0	7658	1609	56	2	5785	2	IGSF10	3	151165623	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	2749	151165623	46856807	12	2957											
GFM1	85476	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	158363431	158363431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcaggttaattggaaggCctgccgatggtcttcatcag	11	8	4	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	158363431	C	T	158363431	3	4	41	1	0	0	0	0	1	0	0	0	6397	739	26	3	101	3	GFM1	3	158363431	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	7197808	158363431	39658999	13	2958											
HTR3E	285242	ucsc.edu	37	chr3	183818222	183818222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggggcccctctcatataGggagcacagggttgctctcc	12	13	2	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	183818222	G	A	183818222	3	1	41	1	0	0	0	0	1	0	0	0	7509	1000	35	4	64	4	HTR3E	3	183818222	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	25454791	183818222	14204208	14	2959											
MUC4	4585	broad.mit.edu	37	chr3	195509957	195509957	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggatggtgacaggaagagAggtggcatgacctgtgaaca	17	5	0	4	rs201699932	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	195509957	A	G	195509957	3	3	41	1	0	0	0	0	1	0	0	0	10056	304	11	2		2	MUC4	3	195509957	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	11691735	195509957	2512473	15	2960			1	36		3	3	190	N	T_G_A	1.568531e-07
MUC4	4585	bcgsc.ca	37	chr3	195510133	195510133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggatactgaggaagtgTtggtgacaggaagaggggtg	19	3	0	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	195510133	T	C	195510133	3	2	41	1	0	0	0	0	1	0	0	0	10056	1725	60	2		2	MUC4	3	195510133	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	176	195510133	2512297	16	2961			1	36		3	3	190	N	T_G_A	1.568531e-07
MUC4	4585	bcgsc.ca	37	chr3	195510146	195510146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagtgttggtgacaggaaGaggggtggcgtgacctgtgg	21	4	0	3	rs199750921		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	195510146	G	C	195510146	3	2	41	1	0	0	0	0	1	0	0	0	10056	942	33	5		5	MUC4	3	195510146	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	13	195510146	2512284	17	2962			1	36		3	3	190	N	T_G_A	1.568531e-07
PAK2	5062	mdanderson.org	37	chr3	196509522	196509522	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcataattctgaatcatgtCtgataacggagaactggaag	9	6	4	3	rs67093638		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	196509522	C	G	196509522	3	3	41	1	0	0	0	0	1	0	0	0	11480	913	32	5	7	5	PAK2	3	196509522	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	999376	196509522	1512908	18	2963											
ANK2	287	broad.mit.edu	37	chr4	114278579	114278579	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatgtcccttcccaatcTtttttctctagtgaagaaag	6	9	2	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	114278579	T	C	114278579	2	2	41	1	0	0	0	0	0	0	0	1	621	1596	56	2		2	ANK2	4	114278579	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10		114278579	76875697	19	2964											
SPOCK3	50859	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	167656152	167656152	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atcttcaatttcatcttcatCattcataatatcgtcttcat	1	10	9	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	167656152	C	T	167656152	3	4	41	1	0	0	0	0	1	0	0	0	15181	826	29	4	83	4	SPOCK3	4	167656152	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	53377573	167656152	23498124	20	2965											
CBR4	84869	bcgsc.ca	37	chr4	169931136	169931136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggctttggccccttccagGtttctggcaatgaccgccag	12	14	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	169931136	G	T	169931136	3	4	41	1	0	0	0	0	1	0	0	0	2735	1252	44	5	628	5	CBR4	4	169931136	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	2274984	169931136	21223140	21	2966											
TRIO	7204	ucsc.edu	37	chr5	14369520	14369520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcctggaacaggagtacaAgagagaagaagactggtgtg	16	5	0	4	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	14369520	A	G	14369520	3	3	41	1	0	0	0	0	1	0	0	0	16657	72	3	2	3174	2	TRIO	5	14369520	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10		14369520	166545740	22	2967											
ADAMTS6	11174	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	64468715	64468715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcggcccaaactgcagcGgatgcggacaggaggtttgc	16	11	0	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	64468715	G	A	64468715	3	1	41	1	0	0	0	0	1	0	0	0	270	1116	39	1	334	1	ADAMTS6	5	64468715	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	50099195	64468715	116446545	23	2968											
AGGF1	55109	hgsc.bcm.edu;ucsc.edu	37	chr5	76326664	76326664	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcctgagctggcccagCtaaggcggaaggtggagaag	17	10	0	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	76326664	C	T	76326664	2	4	41	1	0	0	0	0	0	0	0	1	382	796	28	4		4	AGGF1	5	76326664	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	11857949	76326664	104588596	24	2969											
DTWD2	285605	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	118324112	118324112	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcactgcgccgccctccCgccgctccttgtcgttcggc	11	21	0	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	118324112	C	A	118324112	3	1	41	1	0	0	0	0	1	0	0	0	4829	652	23	5	825	5	DTWD2	5	118324112	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	41997448	118324112	62591148	25	2970											
MYOT	9499	broad.mit.edu	37	chr5	137221866	137221866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagcttttctggaaaagaaAtaatgaaatggtacaattca	7	4	2	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	137221866	A	G	137221866	3	3	41	1	0	0	0	0	1	0	0	0	10172	101	4	4	1180	4	MYOT	5	137221866	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	18897754	137221866	43693394	26	2971											
PSD2	84249	broad.mit.edu	37	chr5	139189307	139189307	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacattctggaagattcagcGgagtccaggccctggagggc	14	10	2	1	rs146390261	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	139189307	G	A	139189307	2	1	41	1	0	0	0	0	0	0	0	1	12736	1103	39	1		1	PSD2	5	139189307	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	1967441	139189307	41725953	27	2972											
PCDHA11	56138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	140250883	140250883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccactgagggcgcgtgcgCgccggggaagcccacgctgg	18	15	0	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	140250883	C	T	140250883	3	4	41	1	0	0	0	0	1	0	0	0	11600	768	27	1	2197	1	PCDHA11	5	140250883	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	1061576	140250883	40664377	28	2973											
TCOF1	6949	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	149773014	149773014	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	agccactcccaagctagactCcagcccctcagtttcctcta	5	18	2	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	149773014	C	G	149773014	3	3	41	1	0	0	0	0	1	0	0	0	15812	855	30	5	3795	5	TCOF1	5	149773014	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	9522131	149773014	31142246	29	2974											
RIPPLY2	134701	broad.mit.edu	37	chr6	84567032	84567032	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcttctgaaaaattttcCaattcaagccacaatttcat	3	10	4	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	84567032	C	A	84567032	3	1	41	1	0	0	0	0	1	0	0	0	13480	594	21	5	325	5	RIPPLY2	6	84567032	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		84567032	86548035	30	2975											
PNRC1	10957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	89793802	89793802	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagtgatccaccttctcctAgtgttcttccaaagcctcct	5	14	2	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	89793802	A	G	89793802	3	3	41	1	0	0	0	0	1	0	0	0	12254	420	15	2	877	2	PNRC1	6	89793802	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	5226770	89793802	81321265	31	2976											
SLC29A4	222962	mdanderson.org	37	chr7	5338714	5338714	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggcctacatgcgctttgaTgtgccgcggccaagggtcca	15	12	0	1	rs6950111	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	5338714	T	C	5338714	2	2	41	1	0	0	0	0	0	0	0	1	14635	1461	51	4		4	SLC29A4	7	5338714	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10		5338714	153799949	32	2977											
OSBPL3	26031	broad.mit.edu	37	chr7	24931999	24931999	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgagttaaactttacctgTcgacttccttgcttggaaga	8	9	0	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	24931999	T	C	24931999	2	2	41	1	0	0	0	0	0	0	0	1	11358	1654	58	2		2	OSBPL3	7	24931999	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	19593285	24931999	134206664	33	2978											
MUC17	140453	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	100677675	100677675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcacacctgtcagccacaCgctggtggccaattctgagg	11	13	2	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	100677675	C	T	100677675	3	4	41	1	0	0	0	0	1	0	0	0	10052	536	19	1	2988	1	MUC17	7	100677675	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	75745676	100677675	58460988	34	2979											
HBP1	26959	broad.mit.edu	37	chr7	106827076	106827076	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatgttgaagattttgctAgagctgaaggctgtgataat	12	3	0	6	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	106827076	A	G	106827076	3	3	41	1	0	0	0	0	1	0	0	0	7043	412	15	2	733	2	HBP1	7	106827076	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	6149401	106827076	52311587	35	2980											
RP1L1	94137	mdanderson.org	37	chr8	10465962	10465962	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgactctggctgggcCtctccttctgcctctggggc	11	15	6	1	rs111646478		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	10465962	C	A	10465962	3	1	41	1	0	0	0	0	1	0	0	0	13628	680	24	5	1560	5	RP1L1	8	10465962	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		10465962	135898060	36	2981			2	37		2	2	29	N	T_C	8.320947e-05
RP1L1	94137	mdanderson.org	37	chr8	10465990	10465990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctctggggcctctacaTcttctgactctggctgggcc	11	15	5	1	rs200622636	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	10465990	T	C	10465990	3	2	41	1	0	0	0	0	1	0	0	0	13628	1435	50	4	1588	4	RP1L1	8	10465990	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	28	10465990	135898032	37	2982			2	37		2	2	29	N	T_C	8.320947e-05
PREX2	80243	broad.mit.edu	37	chr8	68939495	68939495	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacggaagaacacagatgtTcccttggaaggatatttagt	12	6	0	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	68939495	T	C	68939495	2	2	41	1	0	0	0	0	0	0	0	1	12566	1770	62	4		4	PREX2	8	68939495	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	58473505	68939495	77424527	38	2983											
CYP11B1	1584	mdanderson.org	37	chr8	143957661	143957661	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttgccggcctgaccgtgTccacgctccctgcagtgagt	13	14	0	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	143957661	T	C	143957661	3	2	41	1	0	0	0	0	1	0	0	0	4176	1667	58	2	581	2	CYP11B1	8	143957661	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	75018166	143957661	2406361	39	2984											
FBXO18	84893	bcgsc.ca	37	chr10	5978506	5978506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagtgcaacaatgccatcCctgttgacaccgtccttacc	7	15	0	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	5978506	C	T	5978506	3	4	41	1	0	0	0	0	1	0	0	0	5780	623	22	3	3157	3	FBXO18	10	5978506	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		5978506	129556241	40	2985											
SVIL	6840	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	29759270	29759270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcctgggctttgcatccGtgccacaggtagatgagggc	16	10	0	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	29759270	G	A	29759270	2	1	41	1	0	0	0	0	0	0	0	1	15521	1136	40	1		1	SVIL	10	29759270	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	23780764	29759270	105775477	41	2986											
ITGB1	3688	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	33218830	33218830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctctgctgttcctttgCtacggttggttacattttta	8	9	1	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	33218830	C	T	33218830	3	4	41	1	0	0	0	0	1	0	0	0	7951	797	28	4	2390	4	ITGB1	10	33218830	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	3459560	33218830	102315917	42	2987											
MUC2	4583	mdanderson.org	37	chr11	1093569	1093569	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgacacccatcaccaccacAactacggtgaccgcaacccc	6	19	1	2	rs72842460	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	1093569	A	C	1093569	2	2	41	1	0	0	0	0	0	0	0	1	10053	117	5	5		5	MUC2	11	1093569	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10		1093569	133912947	43	2988											
TH	7054	bcgsc.ca	37	chr11	2190951	2190951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaagagcaggtttagcaCggccttcccctccttctcct	10	14	1	2	rs6356	bycluster;byfrequency;by1000genomes	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	2190951	C	T	2190951	3	4	41	1	0	0	0	0	1	0	0	0	15942	536	19	1	1300	1	TH	11	2190951	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	1097382	2190951	132815565	44	2989											
OR51M1	390059	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	5411028	5411028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcatgatgtcctttgacCgccttgtggccatctgccac	8	15	2	2	rs74683499	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	5411028	C	T	5411028	3	4	41	1	0	0	0	0	1	0	0	0	11182	652	23	1	402	1	OR51M1	11	5411028	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	3220077	5411028	129595488	45	2990											
CCDC73	493860	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	32636263	32636263	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactacaaaatgattatttGgtgatttaaattctgtacat	5	5	1	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	32636263	G	T	32636263	3	4	41	1	0	0	0	0	1	0	0	0	2873	1348	47	5	1650	5	CCDC73	11	32636263	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	27225235	32636263	102370253	46	2991											
CDC42BPG	55561	mdanderson.org	37	chr11	64597205	64597205	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcccacacatagccggtcGcccagcagccccaggctctg	11	19	1	0	rs7936466	byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	64597205	G	T	64597205	2	4	41	1	0	0	0	0	0	0	0	1	3103	1074	38	5		5	CDC42BPG	11	64597205	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	31960942	64597205	70409311	47	2992											
ARAP1	116985	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	72438103	72438103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgctgctcaaagagccccGtgtactgctccaggtgcaat	10	13	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	72438103	G	A	72438103	3	1	41	1	0	0	0	0	1	0	0	0	840	1145	40	1	4413	1	ARAP1	11	72438103	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	7840898	72438103	62568413	48	2993											
TMPRSS13	84000	broad.mit.edu;bcgsc.ca	37	chr11	117784539	117784539	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctctgagtaggagtcattCcagttgctgctacagatggg	12	8	2	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	117784539	C	G	117784539	3	3	41	1	0	0	0	0	1	0	0	0	16349	856	30	5	977	5	TMPRSS13	11	117784539	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	45346436	117784539	17221977	49	2994											
CLEC6A	93978	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	8618083	8618083	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtaacacaaaaatagcctGgggatgttgcccagcttctt	9	9	1	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	8618083	G	A	8618083	4	1	41	1	0	0	0	0	0	1	0	0	3549	1357	47	4	241	4	CLEC6A	12	8618083	Nonsense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10		8618083	125233812	50	2995											
PRB2	653247	mdanderson.org	37	chr12	11546448	11546448	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggaccttggggctggttGcctccttgtgggggtggtcc	20	9	0	0	rs11054278		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	11546448	G	A	11546448	2	1	41	1	0	0	0	0	0	0	0	1	12532	1306	46	4		4	PRB2	12	11546448	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	2928365	11546448	122305447	51	2996											
KIF5A	3798	broad.mit.edu	37	chr12	57957254	57957254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgaccgtgtattcccCccaaacacgactcaagagca	7	13	1	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	57957254	C	T	57957254	2	4	41	1	0	0	0	0	0	0	0	1	8366	610	22	3		3	KIF5A	12	57957254	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	46410806	57957254	75894641	52	2997											
CCDC59	29080	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	82747061	82747061	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttgtactgcctttgggcttCttctctctcctgttttctcc	6	13	4	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	82747061	C	A	82747061	4	1	41	1	0	0	0	0	0	1	0	0	2856	922	32	5	134	5	CCDC59	12	82747061	Nonsense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	24789807	82747061	51104834	53	2998											
RNF17	56163	ucsc.edu	37	chr13	25439115	25439115	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatactgtacttctgaacaTactgaggagatgttgaaaga	9	5	1	5	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	25439115	T	C	25439115	2	2	41	1	0	0	0	0	0	0	0	1	13556	1403	49	4		4	RNF17	13	25439115	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10		25439115	89730763	54	2999											
DGKH	160851	ucsc.edu	37	chr13	42623046	42623046	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacagcgaagcggagcaagAgggaccccagaaactgatcc	13	11	0	4	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	42623046	A	G	42623046	3	3	41	1	0	0	0	0	1	0	0	0	4507	304	11	2	139	2	DGKH	13	42623046	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	17183931	42623046	72546832	55	3000											
PIBF1	10464	broad.mit.edu	37	chr13	73572977	73572977	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaattggcagcaatgaaAcagattctcgttaagatgca	10	7	1	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	73572977	A	G	73572977	2	3	41	1	0	0	0	0	0	0	0	1	11959	40	2	2		2	PIBF1	13	73572977	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	30949931	73572977	41596901	56	3001											
LRFN5	145581	broad.mit.edu	37	chr14	42355997	42355997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaagaactgtggaactgCggttggcagacaattttgtt	12	6	0	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	42355997	C	T	42355997	3	4	41	1	0	0	0	0	1	0	0	0	9013	759	27	1	171	1	LRFN5	14	42355997	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		42355997	64993543	57	3002											
SYT16	83851	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	62462902	62462902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgacaaactagatcaGgacttagataatattcagat	8	5	2	5	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	62462902	G	T	62462902	3	4	41	1	0	0	0	0	1	0	0	0	15573	991	35	5	167	5	SYT16	14	62462902	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	20106905	62462902	44886638	58	3003											
PLEKHG3	26030	broad.mit.edu	37	chr14	65194463	65194464	+	Frame_Shift_Ins	INS	-	-	C													gtcgcagtgccatggaggagINScccagcagctccgaggctcc					novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	65194464	-	C	65194463	7	5	41	1	0	1	1	0	0	0	0	0	12150	962	34	0	116	0	PLEKHG3	14	65194463	Frame_Shift_Ins	INS	-	TCGA-KN-8426-01A-11D-2310-10	2731561	65194463	42155077	59	3004											
TRIP11	9321	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	92471894	92471894	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttctttcttgtttataAgttgtgtcaactgcttctgc	6	7	4	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	92471894	A	C	92471894	3	2	41	1	0	0	0	0	1	0	0	0	16660	72	3	5	3557	5	TRIP11	14	92471894	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	27277431	92471894	14877646	60	3005											
NIPA2	81614	broad.mit.edu	37	chr15	23006232	23006232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacctttcttaaaaagctgTcagatttccatttcttcggg	6	10	3	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	23006232	T	C	23006232	3	2	41	1	0	0	0	0	1	0	0	0	10502	1667	58	2	14	2	NIPA2	15	23006232	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10		23006232	79525160	61	3006											
FMN1	342184	broad.mit.edu	37	chr15	33261112	33261113	+	Frame_Shift_Ins	INS	-	-	G													gtggggcaggggagttaggaINSagtgggggtgggggtggggg					novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	33261113	-	G	33261112	7	5	41	1	0	1	1	0	0	0	0	0	5998	233	9	0	1525	0	FMN1	15	33261112	Frame_Shift_Ins	INS	-	TCGA-KN-8426-01A-11D-2310-10	10254880	33261112	69270280	62	3007											
ZFP106	64397	broad.mit.edu	37	chr15	42734362	42734362	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcaggagacatgggctcTtgtttaatctgaactgatga	11	6	3	4	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	42734362	T	C	42734362	2	2	41	1	0	0	0	0	0	0	0	1	17742	1606	56	2		2	ZFP106	15	42734362	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	9473250	42734362	59797030	63	3008											
TPSAB1	7177	mdanderson.org	37	chr16	1291269	1291269	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatactggatgcacttctgCgggggctccctcatccaccc	9	17	2	0	rs71384642		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	1291269	C	T	1291269	2	4	41	1	0	0	0	0	0	0	0	1	16528	776	27	1		1	TPSAB1	16	1291269	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10		1291269	89063484	64	3009											
TPSD1	23430	mdanderson.org	37	chr16	1306665	1306665	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atccacccccagtgggtgctAaccgcggcgcactgcgtgga	13	15	0	0	rs3993988	bycluster;byfrequency	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	1306665	A	G	1306665	2	3	41	1	0	0	0	0	0	0	0	1	16530	349	13	4		4	TPSD1	16	1306665	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	15396	1306665	89048088	65	3010											
DNAH3	55567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	21049160	21049160	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccggagcagcaggacactttCattctcctctggatacttga	9	12	3	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	21049160	C	A	21049160	4	1	41	1	0	0	0	0	0	1	0	0	4640	835	29	5	7592	5	DNAH3	16	21049160	Nonsense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	19742495	21049160	69305593	66	3011											
QPRT	23475	hgsc.bcm.edu	37	chr16	29706448	29706448	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtgggcggggccgcctcGcaccgctacgacctgggagg	18	14	0	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	29706448	G	T	29706448	2	4	41	1	0	0	0	0	0	0	0	1	12968	1074	38	5		5	QPRT	16	29706448	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	8657288	29706448	60648305	67	3012											
ZFHX3	463	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	72992269	72992269	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtctttattggcactttcGtcagcgaagtccagcctcct	8	12	2	0	rs11075951	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	72992269	G	T	72992269	3	4	41	1	0	0	0	0	1	0	0	0	17739	1136	40	5	9371	5	ZFHX3	16	72992269	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	43285821	72992269	17362484	68	3013											
GALNS	2588	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	88889069	88889069	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcgtgtggtcttccagaTtgtgagttgtgacccctgaa	12	9	1	4	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	88889069	T	C	88889069	3	2	41	1	0	0	0	0	1	0	0	0	6260	1493	52	4	288	4	GALNS	16	88889069	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10	15896800	88889069	1465684	69	3014											
POLDIP2	26073	broad.mit.edu	37	chr17	26677558	26677558	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagctgtaccacatcactgTcaaggttctccaaacggata	9	11	3	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	26677558	T	C	26677558	3	2	41	1	0	0	0	0	1	0	0	0	12274	1667	58	2	300	2	POLDIP2	17	26677558	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10		26677558	54517652	70	3015											
UTP6	55813	broad.mit.edu	37	chr17	30207665	30207665	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccggccgacctccactgcTttggcttgtttcgttgtagg	11	12	0	0	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	30207665	T	C	30207665	2	2	41	1	0	0	0	0	0	0	0	1	17208	1606	56	2		2	UTP6	17	30207665	Silent	SNP	T	TCGA-KN-8426-01A-11D-2310-10	3530107	30207665	50987545	71	3016											
FAM134C	162427	ucsc.edu	37	chr17	40737279	40737279	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccacatcatgacagtgacAactgtgaggaggcatgggaa	14	8	1	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	40737279	A	G	40737279	2	3	41	1	0	0	0	0	0	0	0	1	5490	144	5	4		4	FAM134C	17	40737279	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	10529614	40737279	40457931	72	3017											
GJC1	10052	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	42882018	42882018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatccagacggaggtcttccCatcccctgatttgctactgg	9	13	1	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	42882018	C	A	42882018	3	1	41	1	0	0	0	0	1	0	0	0	6470	594	21	5	26	5	GJC1	17	42882018	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	2144739	42882018	38313192	73	3018											
SLC16A5	9121	bcgsc.ca	37	chr17	73102117	73102117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacggctctgggctggaatAgccctacctgagtgccctgt	12	12	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	73102117	A	G	73102117	3	3	41	1	0	0	0	0	1	0	0	0	14509	420	15	2	1525	2	SLC16A5	17	73102117	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	30220099	73102117	8093093	74	3019											
LMAN1	3998	bcgsc.ca	37	chr18	57000391	57000391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctctttgatgtcaatgaAgtgctgtgttgtctcataga	11	6	3	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	57000391	A	G	57000391	3	3	41	1	0	0	0	0	1	0	0	0	8900	72	3	2	238	2	LMAN1	18	57000391	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10		57000391	21076857	75	3020											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	8966765	8966765	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctactctccgagccagtggCgagaagttacacagggagtc	12	11	2	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	8966765	C	T	8966765	2	4	41	1	0	0	0	0	0	0	0	1	10051	755	27	1		1	MUC16	19	8966765	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10		8966765	50162218	76	3021											
SMARCA4	6597	broad.mit.edu	37	chr19	11096982	11096982	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccccgctggatggtgctgAcccccaggccttggggcagc	15	15	0	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	11096982	A	G	11096982	3	3	41	1	0	0	0	0	1	0	0	0	14868	275	10	2	483	2	SMARCA4	19	11096982	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	2130217	11096982	48032001	77	3022											
SPTBN4	57731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	41003434	41003434	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcaaactcaccaagtccaAtgccaactacaacctgcaga	5	15	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	41003434	A	G	41003434	3	3	41	1	0	0	0	0	1	0	0	0	15221	101	4	4	729	4	SPTBN4	19	41003434	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	29906452	41003434	18125549	78	3023											
CEACAM5	1048	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	42225041	42225041	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggacctatgcctgttttgtCtctaacttggctactggccg	11	11	1	0	rs149056934	alternate_allele	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	42225041	C	G	42225041	2	3	41	1	0	0	0	0	0	0	0	1	3224	900	32	5		5	CEACAM5	19	42225041	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	1221607	42225041	16903942	79	3024											
ZNF155	7711	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	44500350	44500350	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaaaagacttaaccaggtCtcaggactctatcataaata	6	9	3	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	44500350	C	T	44500350	3	4	41	1	0	0	0	0	1	0	0	0	17841	913	32	4	355	4	ZNF155	19	44500350	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	2275309	44500350	14628633	80	3025											
LAIR1	3903	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	54875936	54875936	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtctgggccaggcagagCactggaagagaagccccagt	15	10	1	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	54875936	C	T	54875936	2	4	41	1	0	0	0	0	0	0	0	1	8664	724	25	4		4	LAIR1	19	54875936	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	10375586	54875936	4253047	81	3026											
FAM83D	81610	ucsc.edu	37	chr20	37555032	37555032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattcaaaggttgcctataAagcgggactgcacgccggtt	12	9	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	37555032	A	G	37555032	3	3	41	1	0	0	0	0	1	0	0	0	5685	15	1	4	39	4	FAM83D	20	37555032	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10		37555032	25470488	82	3027											
MYH9	4627	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	36697638	36697638	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcagccagctgcttctctCtgaccttcaccagctcctcc	6	20	3	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	36697638	C	T	36697638	3	4	41	1	0	0	0	0	1	0	0	0	10120	913	32	4	3393	4	MYH9	22	36697638	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10		36697638	14606928	83	3028											
TNRC6B	23112	broad.mit.edu	37	chr22	40552184	40552184	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcctggtgaagaaagcaaAcagtgagtcacagtttattt	9	8	1	3	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	40552184	A	G	40552184	2	3	41	1	0	0	0	0	0	0	0	1	16445	40	2	2		2	TNRC6B	22	40552184	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	3854546	40552184	10752382	84	3029											
DNAJB7	150353	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	41257713	41257713	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaaaatttctttaaaaaCatcatctggcttatggaatg	6	5	3	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	41257713	C	A	41257713	3	1	41	1	0	0	0	0	1	0	0	0	4662	478	17	5	647	5	DNAJB7	22	41257713	Missense_Mutation	SNP	C	TCGA-KN-8426-01A-11D-2310-10	705529	41257713	10046853	85	3030											
PHKA1	5255	broad.mit.edu	37	chrX	71925084	71925084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtagtcctctcatcagcTtcactacactctgcagaaat	6	13	4	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		C	71925084	T	C	71925084	3	2	41	1	0	0	0	0	1	0	0	0	11923	1609	56	2	3543	2	PHKA1	23	71925084	Missense_Mutation	SNP	T	TCGA-KN-8426-01A-11D-2310-10		71925084	83345476	86	3031											
RLIM	51132	mdanderson.org	37	chrX	73811695	73811695	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatctgagctagtttctgaActttcaccaccggaactgga	8	10	3	2	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	73811695	A	G	73811695	2	3	41	1	0	0	0	0	0	0	0	1	13485	40	2	2		2	RLIM	23	73811695	Silent	SNP	A	TCGA-KN-8426-01A-11D-2310-10	1886611	73811695	81458865	87	3032			3	38		4	3	67	N	G_C_A	1.894246e-08
RLIM	51132	mdanderson.org	37	chrX	73811739	73811739	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggactggaactggaacttgAactggaactggaactcgaac	12	8	0	1	rs201164156		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	73811739	A	G	73811739	3	3	41	1	0	0	0	0	1	0	0	0	13485	246	9	4	467	4	RLIM	23	73811739	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	44	73811739	81458821	88	3033			3	38		4	3	67	N	G_C_A	1.894246e-08
RLIM	51132	mdanderson.org	37	chrX	73811755	73811755	+	Silent	SNP	C	C	G													cttgaactggaactggaactCgaactggaactggaactcga					rs7883332	bycluster;byfrequency;by1000genomes	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		G	73811755	C	G	73811755	2	3	41	1	0	0	0	0	0	0	0	1	13485	871	31	5		5	RLIM	23	73811755	Silent	SNP	C	TCGA-KN-8426-01A-11D-2310-10	16	73811755	81458805	89	3034	86	2	3	38		4	3	67	N	G_C_A	1.894246e-08
RLIM	51132	mdanderson.org	37	chrX	73811761	73811761	+	Silent	SNP	G	G	T													ctggaactggaactcgaactGgaactggaactcgaactgga					novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	73811761	G	T	73811761	2	4	41	1	0	0	0	0	0	0	0	1	13485	1335	47	5		5	RLIM	23	73811761	Silent	SNP	G	TCGA-KN-8426-01A-11D-2310-10	6	73811761	81458799	90	3035	86	2	3	38		4	3	67	N	G_C_A	1.894246e-08
RGAG1	57529	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	109696984	109696984	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccatgccactaccaagaGccacagcctctggatgtggc	10	15	1	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	109696984	G	T	109696984	3	4	41	1	0	0	0	0	1	0	0	0	13366	971	34	5	3141	5	RGAG1	23	109696984	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	35885223	109696984	45573576	91	3036											
FLNA	2316	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	153588714	153588714	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agggaaccacgtgggccttgAatggggagccagggatgtgg	19	7	0	1	novel		TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		T	153588714	A	T	153588714	3	4	41	1	0	0	0	0	1	0	0	0	5982	246	9	5	4602	5	FLNA	23	153588714	Missense_Mutation	SNP	A	TCGA-KN-8426-01A-11D-2310-10	43891730	153588714	1681846	92	3037											
IL9R	3581	mdanderson.org	37	chrX	155239602	155239602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcacttgtggcccagcgcGtccttggaaatctgtggccc	12	14	2	0	rs2228650	bycluster;bysubmitter	TCGA-KN-8426-01A-11D-2310-10	TCGA-KN-8426-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a3deafcb-b54f-4b7e-89ac-c92c16fb919f	fb5c34ce-5b82-4bd7-a195-5f0c2dab07d4		A	155239602	G	A	155239602	3	1	41	1	0	0	0	0	1	0	0	0	7769	1145	40	1	1128	1	IL9R	23	155239602	Missense_Mutation	SNP	G	TCGA-KN-8426-01A-11D-2310-10	1650888	155239602	30958	93	3038											
EXOSC10	5394	bcgsc.ca	37	chr1	11151122	11151122	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagattttaggaagaaAtggtgtgttggaattgtcaa	13	1	1	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	11151122	A	G	11151122	3	3	42	1	0	0	0	0	1	0	0	0	5353	101	4	4	2149	4	EXOSC10	1	11151122	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10		11151122	238099499	1	3039											
SPEN	23013	hgsc.bcm.edu;ucsc.edu	37	chr1	16256119	16256119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggaccagagagagaagaCgttaggaaaaactattgcag	12	6	0	3	rs140864111	bycluster;byfrequency;by1000genomes	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	16256119	C	T	16256119	2	4	42	1	0	0	0	0	0	0	0	1	15138	535	19	1		1	SPEN	1	16256119	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	5104997	16256119	232994502	2	3040											
CSMD2	114784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	34209065	34209065	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaactgaggctccacgtcAatgtcgttgaaggccaggtg	12	10	2	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	34209065	A	G	34209065	2	3	42	1	0	0	0	0	0	0	0	1	3976	126	5	4		4	CSMD2	1	34209065	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	17952946	34209065	215041556	3	3041											
CYP4X1	260293	bcgsc.ca	37	chr1	47498964	47498964	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggttccagcatcgtcgccTactaactcctggattccatt	8	13	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	47498964	T	C	47498964	3	2	42	1	0	0	0	0	1	0	0	0	4224	1522	53	2	430	2	CYP4X1	1	47498964	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	13289899	47498964	201751657	4	3042											
SYT6	148281	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	114680520	114680520	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agctcttggtggcctcagacTtggcatcctccccatccacc	8	17	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	114680520	T	G	114680520	3	3	42	1	0	0	0	0	1	0	0	0	15579	1609	56	5	884	5	SYT6	1	114680520	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	67181556	114680520	134570101	5	3043											
NRAS	4893	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggcactgtactcttcttGtccagctgtatccagtatgt	8	11	2	0	rs121913254	bycluster	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	115256530	G	T	115256530	3	4	42	1	0	0	0	0	1	0	0	0	10719	1386	48	5	400	5	NRAS	1	115256530	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	576010	115256530	133994091	6	3044											
FLG	2312	mdanderson.org	37	chr1	152284806	152284806	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcgtggtgggacccctgCcttcctcttctgcttgaccc	10	16	2	1	rs71625190		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	152284806	C	T	152284806	2	4	42	1	0	0	0	0	0	0	0	1	5971	738	26	3		3	FLG	1	152284806	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	37028276	152284806	96965815	7	3045											
CRNN	49860	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	152382811	152382811	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcttgctggttcttcctgtCtggtggctgctgtcctgctc	12	12	2	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	152382811	C	A	152382811	3	1	42	1	0	0	0	0	1	0	0	0	3921	912	32	5	744	5	CRNN	1	152382811	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	98005	152382811	96867810	8	3046											
EFNA4	1945	hgsc.bcm.edu;mdanderson.org	37	chr1	155036407	155036407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctactggaactccagtaaCcccaggtagccgggccgaac	11	14	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	155036407	C	T	155036407	2	4	42	1	0	0	0	0	0	0	0	1	4990	506	18	3		3	EFNA4	1	155036407	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	2653596	155036407	94214214	9	3047											
SPTA1	6708	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	158596633	158596633	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acctgacacatcatacctatCcaagcctctaccacatcagc	3	17	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	158596633	C	T	158596633	4	4	42	1	0	0	0	0	0	1	0	0	15216	856	30	3	1478	3	SPTA1	1	158596633	Nonsense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3560226	158596633	90653988	10	3048											
COPA	1314	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	160275563	160275563	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atcttcacagatgccagagtCctgagatagatagagatgtg	11	7	2	5	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	160275563	C	G	160275563	2	3	42	1	0	0	0	0	0	0	0	1	3756	869	30	5		5	COPA	1	160275563	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	1678930	160275563	88975058	11	3049											
GPR161	23432	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	168066296	168066296	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgtgtagccaggctcccgGtgccaagcagccacacacat	11	16	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	168066296	G	T	168066296	3	4	42	1	0	0	0	0	1	0	0	0	6722	1252	44	5	1056	5	GPR161	1	168066296	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	7790733	168066296	81184325	12	3050											
FMO3	2328	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	171072967	171072967	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctagcatttacaaatcagtCttttccaactcttccaaaga	4	11	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	171072967	C	T	171072967	2	4	42	1	0	0	0	0	0	0	0	1	6005	900	32	4		4	FMO3	1	171072967	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3006671	171072967	78177654	13	3051											
PAPPA2	60676	hgsc.bcm.edu;ucsc.edu	37	chr1	176709219	176709219	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgctgctgaatttctcAtccccacgggtcggcatctc	9	14	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	176709219	A	C	176709219	2	2	42	1	0	0	0	0	0	0	0	1	11512	204	8	5		5	PAPPA2	1	176709219	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	5636252	176709219	72541402	14	3052											
F13B	2165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	197026583	197026583	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaggtggaggaggacatCtgtttcttcttccttatgga	13	7	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	197026583	C	T	197026583	3	4	42	1	0	0	0	0	1	0	0	0	5381	913	32	4	1195	4	F13B	1	197026583	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	20317364	197026583	52224038	15	3053											
TIMM17A	10440	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	201934576	201934576	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagatggaccagtggccaTggttgggtcagccgcaatgg	15	9	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	201934576	T	C	201934576	3	2	42	1	0	0	0	0	1	0	0	0	16012	1464	51	4	353	4	TIMM17A	1	201934576	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	4907993	201934576	47316045	16	3054											
OBSCN	84033	mdanderson.org;bcgsc.ca	37	chr1	228433197	228433197	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccactgccatgctgagctgtGaggtggcccagccccagaca	12	15	0	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	228433197	G	C	228433197	3	2	42	1	0	0	0	0	1	0	0	0	10891	1291	45	5	3607	5	OBSCN	1	228433197	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	26498621	228433197	20817424	17	3055											
OR2T27	403239	mdanderson.org	37	chr1	248813271	248813271	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgaggacacacacctcccCacaaccttctgtagggcccc	7	19	1	1	rs2802081	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	248813271	C	A	248813271	2	1	42	1	0	0	0	0	0	0	0	1	11100	581	21	5		5	OR2T27	1	248813271	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	20380074	248813271	437350	18	3056											
WDR35	57539	hgsc.bcm.edu;ucsc.edu	37	chr2	20189771	20189771	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	actttcttgctcaggtagaaGaacatcgtgggatccccgag	11	10	2	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	20189771	G	A	20189771	2	1	42	1	0	0	0	0	0	0	0	1	17395	933	33	4		4	WDR35	2	20189771	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10		20189771	223009602	19	3057											
EPT1	85465	broad.mit.edu;mdanderson.org	37	chr2	26596325	26596325	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggatagttggtcatgtgTttactttgttgtgactgttt	11	5	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	26596325	T	C	26596325	3	2	42	1	0	0	0	0	1	0	0	0	5238	1725	60	2	419	2	EPT1	2	26596325	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	6406554	26596325	216603048	20	3058											
FOXN2	3344	broad.mit.edu	37	chr2	48602092	48602092	+	Frame_Shift_Del	DEL	A	A	-													tcctcttaaaacagcattgcAaaaaaagaggagttacggca					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	48602092	A	-	48602092	7	5	42	1	0	1	0	1	0	0	0	0	6071	130	5	0	824	0	FOXN2	2	48602092	Frame_Shift_Del	DEL	A	TCGA-KN-8427-01A-11D-2310-10	22005767	48602092	194597281	21	3059											
AFTPH	54812	broad.mit.edu	37	chr2	64779179	64779179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggtttgcagtgttggaaActgtaaatcctcagggaaca	12	6	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	64779179	A	G	64779179	3	3	42	1	0	0	0	0	1	0	0	0	364	43	2	2	573	2	AFTPH	2	64779179	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	16177087	64779179	178420194	22	3060											
RMND5A	64795	bcgsc.ca	37	chr2	86993084	86993084	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgggctgatatctgtgAcatctttacacgggatgctt	11	9	2	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	86993084	A	G	86993084	3	3	42	1	0	0	0	0	1	0	0	0	13492	275	10	2	813	2	RMND5A	2	86993084	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	22213905	86993084	156206289	23	3061											
PROM2	150696	broad.mit.edu	37	chr2	95944771	95944771	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagcagccggaaggggtgAggacactggctgaagggttc	17	10	0	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	95944771	A	G	95944771	3	3	42	1	0	0	0	0	1	0	0	0	12645	295	11	2	1191	2	PROM2	2	95944771	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	8951687	95944771	147254602	24	3062											
KYNU	8942	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	143713785	143713785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcagttatcattttttaAgcctacgccaaaacgatata	5	8	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	143713785	A	G	143713785	3	3	42	1	0	0	0	0	1	0	0	0	8649	72	3	2	467	2	KYNU	2	143713785	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	47769014	143713785	99485588	25	3063											
MBD5	55777	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	149247532	149247532	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggggagcgaaacaggtggaAgtacgaggaatttttagatc	15	4	0	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	149247532	A	C	149247532	3	2	42	1	0	0	0	0	1	0	0	0	9424	72	3	5	3658	5	MBD5	2	149247532	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	5533747	149247532	93951841	26	3064											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	179437087	179437087	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttctgcgagaaccctgAaatagtagctacagccttct	7	11	2	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	179437087	A	G	179437087	3	3	42	1	0	0	0	0	1	0	0	0	16841	246	9	4	34355	4	TTN	2	179437087	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	30189555	179437087	63762286	27	3065											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr2	179644742	179644742	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctgatcttctacataAgttctgaccactacagtatc	4	13	4	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	179644742	A	C	179644742	2	2	42	1	0	0	0	0	0	0	0	1	16841	59	3	5		5	TTN	2	179644742	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	207655	179644742	63554631	28	3066											
ARL4C	10123	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	235404686	235404686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttgagggacttcctgCgtttcaggatcatctcatag	10	10	4	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	235404686	C	T	235404686	3	4	42	1	0	0	0	0	1	0	0	0	941	768	27	1	37	1	ARL4C	2	235404686	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	55759944	235404686	7794687	29	3067											
GRM7	2917	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	7620544	7620544	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctgatgattgccaaaccaGatgtggcagtgtgttctttc	10	9	1	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	7620544	G	C	7620544	3	2	42	1	0	0	0	0	1	0	0	0	6860	942	33	5	1981	5	GRM7	3	7620544	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		7620544	190401886	30	3068											
ZNF445	353274	broad.mit.edu	37	chr3	44489837	44489837	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgatgtaggctgaagccCccaatcatgtgtctgagccc	10	13	3	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	44489837	C	T	44489837	2	4	42	1	0	0	0	0	0	0	0	1	18023	610	22	3		3	ZNF445	3	44489837	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	36869293	44489837	153532593	31	3069											
SCAP	22937	broad.mit.edu	37	chr3	47462126	47462126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagccgcaggtttcggaagGaagacggctgcaacgtgatg	17	8	0	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	47462126	G	A	47462126	3	1	42	1	0	0	0	0	1	0	0	0	13973	1174	41	3	2406	3	SCAP	3	47462126	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	2972289	47462126	150560304	32	3070											
ABI3BP	25890	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	100515270	100515270	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccaggttcgctctgagagAcctcagggtatggtttatga	12	8	2	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	100515270	A	G	100515270	3	3	42	1	0	0	0	0	1	0	0	0	91	275	10	2	1497	2	ABI3BP	3	100515270	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	53053144	100515270	97507160	33	3071											
WWTR1	25937	mdanderson.org	37	chr3	149374873	149374873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccagccagtcgaggccccGggtggccgcccgacgagtcg	15	18	0	0	rs1055153	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	149374873	G	T	149374873	3	4	42	1	0	0	0	0	1	0	0	0	17523	1116	39	5	1005	5	WWTR1	3	149374873	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	48859603	149374873	48647557	34	3072											
GPR87	53836	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	151012813	151012813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagatagaatatgaagctgGttttattcctaatgtggaag	11	3	0	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	151012813	G	A	151012813	3	1	42	1	0	0	0	0	1	0	0	0	6773	1261	44	3	859	3	GPR87	3	151012813	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	1637940	151012813	47009617	35	3073											
MUC4	4585	broad.mit.edu;mdanderson.org	37	chr3	195510911	195510911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagggagtgtcggtgacagGtagaggggtggtgtgacctg	21	4	0	4	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	195510911	G	A	195510911	3	1	42	1	0	0	0	0	1	0	0	0	10056	1261	44	3		3	MUC4	3	195510911	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	44498098	195510911	2511519	36	3074											
MUC4	4585	mdanderson.org	37	chr3	195511547	195511547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacatgaagaggggtggCgtgacctgtggatgctgagg	20	5	0	5	rs74542179		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	195511547	C	T	195511547	3	4	42	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195511547	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	636	195511547	2510883	37	3075											
FGFBP2	83888	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	15964500	15964500	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaaggtttggggtcagcagCgaaagcctggcacatgctgg	16	8	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	15964500	C	T	15964500	3	4	42	1	0	0	0	0	1	0	0	0	5910	768	27	1	422	1	FGFBP2	4	15964500	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		15964500	175189776	38	3076											
LEF1	51176	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	109084842	109084842	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcccttgttgtagaggcctCcatctggatgctttcctggg	12	11	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	109084842	C	G	109084842	3	3	42	1	0	0	0	0	1	0	0	0	8776	855	30	5	1023	5	LEF1	4	109084842	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	93120342	109084842	82069434	39	3077											
MARCH1	55016	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	164466780	164466780	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttgatttcctccgctGtccggtctatcaatacatac	6	13	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	164466780	G	C	164466780	3	2	42	1	0	0	0	0	1	0	0	0	9375	1377	48	5	338	5	MARCH1	4	164466780	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	55381938	164466780	26687496	40	3078											
FRG1	2483	mdanderson.org	37	chr4	190878571	190878571	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggaaaatggctttgttgGcctcaaatagctgctttatt	11	6	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	190878571	G	A	190878571	3	1	42	1	0	0	0	0	1	0	0	0	6098	1203	42	3	473	3	FRG1	4	190878571	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	26411791	190878571	275705	41	3079											
MAP1B	4131	bcgsc.ca	37	chr5	71493198	71493198	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcacacaccttactatcaatCtcctactgacgagaaatcca	3	14	3	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	71493198	C	T	71493198	3	4	42	1	0	0	0	0	1	0	0	0	9305	913	32	4	4034	4	MAP1B	5	71493198	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		71493198	109422062	42	3080											
MCTP1	79772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	94046552	94046552	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacaatgtatctcagcggaAtgcagtacaggatggctgtg	14	7	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	94046552	A	C	94046552	3	2	42	1	0	0	0	0	1	0	0	0	9477	101	4	5	210	5	MCTP1	5	94046552	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	22553354	94046552	86868708	43	3081											
SEMA6A	57556	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	115840607	115840607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccccagcaaagtgtagcaGtgtgaaatatagcagcaagg	12	8	0	1	rs36105994	bycluster;by1000genomes;alternate_allele	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	115840607	G	C	115840607	3	2	42	1	0	0	0	0	1	0	0	0	14136	1020	36	5	3130	5	SEMA6A	5	115840607	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	21794055	115840607	65074653	44	3082											
CPLX2	10814	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	175306003	175306003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagcggcaggaggcgctgCggcagcaggaggaggagcgt	22	8	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	175306003	C	T	175306003	3	4	42	1	0	0	0	0	1	0	0	0	3834	759	27	1	130	1	CPLX2	5	175306003	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	59465396	175306003	5609257	45	3083											
HIST1H2BD	3017	broad.mit.edu	37	chr6	26158611	26158611	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ccttcgtcaacgacatcttcGagcgcatcgcaggcgaggct	11	14	2	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	26158611	G	C	26158611	3	2	42	1	0	0	0	0	1	0	0	0	7201	1059	37	5	216	5	HIST1H2BD	6	26158611	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		26158611	144956456	46	3084											
MUC21	394263	mdanderson.org	37	chr6	30954921	30954921	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aactctgactccagcacaacCtccagtggggccagcacagc	9	16	1	1	rs148418523	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	30954921	C	G	30954921	2	3	42	1	0	0	0	0	0	0	0	1	10055	668	24	5		5	MUC21	6	30954921	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	4796310	30954921	140160146	47	3085											
TTBK1	84630	mdanderson.org	37	chr6	43251912	43251912	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagcggccttgcccaggaAgagcgggagggcagccgcca	18	13	0	1	rs3800297	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	43251912	A	G	43251912	3	3	42	1	0	0	0	0	1	0	0	0	16782	72	3	2	3484	2	TTBK1	6	43251912	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	12296991	43251912	127863155	48	3086											
RFX6	222546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	117248566	117248566	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatataactcccggccaccGtctagctatggcccatccct	6	18	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	117248566	G	T	117248566	2	4	42	1	0	0	0	0	0	0	0	1	13359	1132	40	5		5	RFX6	6	117248566	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	73996654	117248566	53866501	49	3087											
C7orf57	136288	ucsc.edu	37	chr7	48080990	48080990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggatgccccaccagcgTcccagatcccaggtctcagc	10	18	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	48080990	T	C	48080990	3	2	42	1	0	0	0	0	1	0	0	0	2427	1667	58	2	121	2	C7orf57	7	48080990	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10		48080990	111057673	50	3088											
SRCRB4D	136853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	76021323	76021323	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacccgcgtggtctcagaacCatcctgctggacttgcagtc	10	15	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	76021323	C	G	76021323	3	3	42	1	0	0	0	0	1	0	0	0	15237	594	21	5	366	5	SRCRB4D	7	76021323	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	27940333	76021323	83117340	51	3089											
SEMA3A	10371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	83590705	83590705	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcagacactcctgggtgcCctctcaaattcgtgggtcct	10	14	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	83590705	C	T	83590705	2	4	42	1	0	0	0	0	0	0	0	1	14121	622	22	3		3	SEMA3A	7	83590705	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	7569382	83590705	75547958	52	3090											
ANKRD7	56311	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	117876137	117876137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgccgttattaacaataatCcaaaaatggtaaaatttctt	4	6	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	117876137	C	T	117876137	3	4	42	1	0	0	0	0	1	0	0	0	686	855	30	3	525	3	ANKRD7	7	117876137	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	34285432	117876137	41262526	53	3091											
NOM1	64434	broad.mit.edu	37	chr7	156752565	156752567	+	In_Frame_Del	DEL	GGC	GGC	-													gtcggtgcccactttctggaGgcagtggtgaggaagttcga					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	156752567	GGC	-	156752565	7	5	42	1	0	1	0	1	0	0	0	0	10609	991	35	0	1343	0	NOM1	7	156752565	In_Frame_Del	DEL	GGC	TCGA-KN-8427-01A-11D-2310-10	38876428	156752565	2386098	54	3092	87	4									
NOM1	64434	bcgsc.ca	37	chr7	156752566	156752568	+	In_Frame_Del	DEL	GGC	GGC	-													tcggtgcccactttctggagGcagtggtgaggaagttcgat					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	156752568	GGC	-	156752566	7	5	42	1	0	1	0	1	0	0	0	0	10609	1203	42	0	1344	0	NOM1	7	156752566	In_Frame_Del	DEL	GGC	TCGA-KN-8427-01A-11D-2310-10	1	156752566	2386097	55	3093	87	4									
NOM1	64434	broad.mit.edu	37	chr7	156752569	156752570	+	Frame_Shift_Del	DEL	GT	GT	-													gtgcccactttctggaggcaGtggtgaggaagttcgatgcc					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	156752570	GT	-	156752569	7	5	42	1	0	1	0	1	0	0	0	0	10609	1029	36	0	1347	0	NOM1	7	156752569	Frame_Shift_Del	DEL	GT	TCGA-KN-8427-01A-11D-2310-10	3	156752569	2386094	56	3094	87	4									
NOM1	64434	bcgsc.ca	37	chr7	156752570	156752571	+	Frame_Shift_Del	DEL	GT	GT	-													tgcccactttctggaggcagTggtgaggaagttcgatgcca					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	156752571	GT	-	156752570	7	5	42	1	0	1	0	1	0	0	0	0	10609	1696	59	0	1348	0	NOM1	7	156752570	Frame_Shift_Del	DEL	GT	TCGA-KN-8427-01A-11D-2310-10	1	156752570	2386093	57	3095	87	4									
SCARA5	286133	mdanderson.org	37	chr8	27779545	27779545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcgcctgcagcccccaCagcgcgccctccagccgctg	11	22	0	0	rs10103504	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	27779545	C	T	27779545	2	4	42	1	0	0	0	0	0	0	0	1	13976	465	17	4		4	SCARA5	8	27779545	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		27779545	118584477	58	3096											
PABPC1	26986	broad.mit.edu	37	chr8	101724623	101724624	+	Frame_Shift_Ins	INS	-	-	A													ttgtaccaaatggagaaaacINStctttccggagacgttcatc					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	101724624	-	A	101724623	7	5	42	1	0	1	1	0	0	0	0	0	11442	564	20	0	1003	0	PABPC1	8	101724623	Frame_Shift_Ins	INS	-	TCGA-KN-8427-01A-11D-2310-10	73945078	101724623	44639399	59	3097	88	2									
PABPC1	26986	broad.mit.edu	37	chr8	101724626	101724627	+	Frame_Shift_Del	DEL	TT	TT	-													gtaccaaatggagaaaactcTttccggagacgttcatcatc					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	101724627	TT	-	101724626	7	5	42	1	0	1	0	1	0	0	0	0	11442	1606	56	0	1006	0	PABPC1	8	101724626	Frame_Shift_Del	DEL	TT	TCGA-KN-8427-01A-11D-2310-10	3	101724626	44639396	60	3098	88	2									
DCAF13	25879	hgsc.bcm.edu	37	chr8	104427572	104427572	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgctccgcgagtcacgtgacTggaagtagtctgggaaaagc	14	10	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	104427572	T	A	104427572	2	1	42	1	0	0	0	0	0	0	0	1	4298	1567	55	5		5	DCAF13	8	104427572	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	2702946	104427572	41936450	61	3099											
PKHD1L1	93035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	110530424	110530424	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctaacctggattccacTgtccttggtgaaaactactt	6	12	0	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	110530424	T	C	110530424	2	2	42	1	0	0	0	0	0	0	0	1	12052	1567	55	2		2	PKHD1L1	8	110530424	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	6102852	110530424	35833598	62	3100											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr8	113988244	113988244	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgttcctcggaaagtctAtggatggtgacagctgtaac	12	9	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	113988244	A	G	113988244	2	3	42	1	0	0	0	0	0	0	0	1	3977	446	16	4		4	CSMD3	8	113988244	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	3457820	113988244	32375778	63	3101											
CYP11B1	1584	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	143958438	143958438	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttcccacgtggcccacaCcttctatggtgtagtggaag	10	12	2	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	143958438	C	T	143958438	5	4	42	1	0	0	0	0	0	0	1	0	4176	521	18	3	943	3	CYP11B1	8	143958438	Splice_Site	SNP	C	TCGA-KN-8427-01A-11D-2310-10	29970194	143958438	2405584	64	3102											
PLEC	5339	mdanderson.org	37	chr8	144996029	144996029	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgcagcctctgagctgAcaccttccgccgcaggccat	9	18	1	2	rs7833924	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	144996029	A	G	144996029	3	3	42	1	0	0	0	0	1	0	0	0	12132	275	10	2	5687	2	PLEC	8	144996029	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	1037591	144996029	1367993	65	3103											
C9orf72	203228	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	27556771	27556771	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatgacttgccggaaaggCagcacaaagcttccagttga	10	10	0	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	27556771	C	T	27556771	2	4	42	1	0	0	0	0	0	0	0	1	2520	697	25	4		4	C9orf72	9	27556771	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		27556771	113656660	66	3104											
CNTNAP3	79937	mdanderson.org	37	chr9	39177438	39177438	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggaatgccagtgctggtcGtccagcaggctgcccagggt	15	12	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	39177438	G	A	39177438	2	1	42	1	0	0	0	0	0	0	0	1	3677	1136	40	1		1	CNTNAP3	9	39177438	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	11620667	39177438	102035993	67	3105											
ROR2	4920	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	94487339	94487339	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcccaaaccggtcctctccCagctcctccatgaacctcac	4	20	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	94487339	C	G	94487339	2	3	42	1	0	0	0	0	0	0	0	1	13622	581	21	5		5	ROR2	9	94487339	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	55309901	94487339	46726092	68	3106											
GARNL3	84253	broad.mit.edu	37	chr9	130075815	130075815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaacgtgtccctcaatacCgtgcaattctttggagaaaa	7	10	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	130075815	C	T	130075815	3	4	42	1	0	0	0	0	1	0	0	0	6295	652	23	1	429	1	GARNL3	9	130075815	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	35588476	130075815	11137616	69	3107											
PPAPDC3	84814	mdanderson.org	37	chr9	134183379	134183379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgcggcccgtacgagaCgagccccagcctcctggact	14	17	0	1	rs2966332	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	134183379	C	T	134183379	3	4	42	1	0	0	0	0	1	0	0	0	12376	536	19	1	527	1	PPAPDC3	9	134183379	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	4107564	134183379	7030052	70	3108											
DCLRE1C	64421	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	14951197	14951197	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcagcatcctggggtttgtCtcagtttttcaggctgcttt	11	9	2	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	14951197	C	G	14951197	3	3	42	1	0	0	0	0	1	0	0	0	4328	913	32	5	793	5	DCLRE1C	10	14951197	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		14951197	120583550	71	3109											
C10orf114	399726	broad.mit.edu	37	chr10	21784654	21784655	+	Frame_Shift_Ins	INS	-	-	C													ggccgttccggacggtcaggINScccgccgctacagggagaag					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	21784655	-	C	21784654	7	5	42	1	0	1	1	0	0	0	0	0	1595	1203	42	0	128	0	C10orf114	10	21784654	Frame_Shift_Ins	INS	-	TCGA-KN-8427-01A-11D-2310-10	6833457	21784654	113750093	72	3110											
KIAA1462	57608	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	30318485	30318485	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatctccatcagacatctGcctccctaatttccttggct	4	17	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	30318485	G	A	30318485	4	1	42	1	0	0	0	0	0	1	0	0	8295	1328	46	4	3495	4	KIAA1462	10	30318485	Nonsense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	8533831	30318485	105216262	73	3111											
RTKN2	219790	hgsc.bcm.edu;mdanderson.org	37	chr10	63957976	63957976	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggaagtttatcagaaggAggaaggggagcttgtctctt	14	4	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	63957976	A	C	63957976	2	2	42	1	0	0	0	0	0	0	0	1	13818	291	11	5		5	RTKN2	10	63957976	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	33639491	63957976	71576771	74	3112											
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	70702984	70702984	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tttagggtgtttgctttgatGttcctacaactgagtcagaa	10	6	1	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	70702984	G	C	70702984	3	2	42	1	0	0	0	0	1	0	0	0	4400	1377	48	5	1960	5	DDX50	10	70702984	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	6745008	70702984	64831763	75	3113											
TYSND1	219743	mdanderson.org	37	chr10	71906150	71906150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagacggcgccggccgcggTcaggacttcgctgccagctc	15	15	1	1	rs4746970	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	71906150	T	C	71906150	3	2	42	1	0	0	0	0	1	0	0	0	16923	1667	58	2	1523	2	TYSND1	10	71906150	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	1203166	71906150	63628597	76	3114											
CYP2C9	1559	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	96748762	96748762	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtgccgcccttctacCagctgtgcttcattcctgtc	7	17	3	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	96748762	C	T	96748762	4	4	42	1	0	0	0	0	0	1	0	0	4199	595	21	4	1484	4	CYP2C9	10	96748762	Nonsense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	24842612	96748762	38785985	77	3115											
UBTD1	80019	hgsc.bcm.edu	37	chr10	99329915	99329915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaccctctgtgaatgctacGatgagctgggcaatcgctac	11	12	1	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	99329915	G	A	99329915	3	1	42	1	0	0	0	0	1	0	0	0	17013	1058	37	1	329	1	UBTD1	10	99329915	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	2581153	99329915	36204832	78	3116											
DCLRE1A	9937	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	115609249	115609249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attatacttaagaccagaagGcaatattttcaaatacttcg	5	7	1	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	115609249	G	A	115609249	3	1	42	1	0	0	0	0	1	0	0	0	4326	1203	42	3	1539	3	DCLRE1A	10	115609249	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	16279334	115609249	19925498	79	3117											
MUC6	4588	mdanderson.org	37	chr11	1018262	1018262	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtttgtgctgaatgagctGtgggcttggctggtcccact	14	8	0	2	rs78003962	alternate_allele	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	1018262	G	T	1018262	3	4	42	1	0	0	0	0	1	0	0	0	10058	1368	48	5	2792	5	MUC6	11	1018262	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		1018262	133988254	80	3118											
MUC5B	727897	broad.mit.edu	37	chr11	1271712	1271713	+	Frame_Shift_Ins	INS	-	-	C													cctccctgggcaccacctggINSacccgcctatcacagaccac					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	1271713	-	C	1271712	7	5	42	1	0	1	1	0	0	0	0	0	10057	1183	41	0	13733	0	MUC5B	11	1271712	Frame_Shift_Ins	INS	-	TCGA-KN-8427-01A-11D-2310-10	253450	1271712	133734804	81	3119											
BRSK2	9024	broad.mit.edu;hgsc.bcm.edu	37	chr11	1466625	1466625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaccccgacgtgctggacaGcatgcactcactgggctgct	12	15	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	1466625	G	A	1466625	3	1	42	1	0	0	0	0	1	0	0	0	1532	971	34	4	952	4	BRSK2	11	1466625	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	194913	1466625	133539891	82	3120											
MS4A5	64232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	60198312	60198312	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgaccttttcttttggagTtatcttccttttcaccttgt	5	9	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	60198312	T	G	60198312	3	3	42	1	0	0	0	0	1	0	0	0	9941	1725	60	5	203	5	MS4A5	11	60198312	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	58731687	60198312	74808204	83	3121											
MACROD1	28992	mdanderson.org	37	chr11	63767186	63767186	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcggagctcggcagcctgActggcgctgggctccccgta	15	15	0	1	rs709594	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	63767186	A	G	63767186	2	3	42	1	0	0	0	0	0	0	0	1	9218	272	10	2		2	MACROD1	11	63767186	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	3568874	63767186	71239330	84	3122											
GAL3ST3	89792	hgsc.bcm.edu;mdanderson.org	37	chr11	65811123	65811124	+	Missense_Mutation	DNP	AG	AG	CT													cgagttccgcagaggagggcAgctcaaggggaacagcttgg					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		CT	65811124	AG	CT	65811123	3	2	42	1	0	0	0	0	1	0	0	0	6253	188	7	5	1148	5	GAL3ST3	11	65811123	Missense_Mutation	DNP	AG	TCGA-KN-8427-01A-11D-2310-10	2043937	65811123	69195393	85	3123	89	2									
GAL3ST3	89792	broad.mit.edu;bcgsc.ca	37	chr11	65811124	65811124	+	Missense_Mutation	SNP	G	G	T													gagttccgcagaggagggcaGctcaaggggaacagcttggg					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	65811124	G	T	65811124	3	4	42	1	0	0	0	0	1	0	0	0	6253	962	34	5	1149	5	GAL3ST3	11	65811124	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	1	65811124	69195392	86	3124	89	2									
MMP12	4321	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	102737125	102737125	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaggttggccataaggaAgaaattaaattaacactggt	11	5	0	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	102737125	A	C	102737125	2	2	42	1	0	0	0	0	0	0	0	1	9728	59	3	5		5	MMP12	11	102737125	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	36926001	102737125	32269391	87	3125											
GRIA4	2893	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	105776029	105776029	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcacaggacctagaaaggTgagccacgatcaaactgaaa	10	9	1	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	105776029	T	G	105776029	5	3	42	1	0	0	0	0	0	0	1	0	6828	1710	59	5	1190	5	GRIA4	11	105776029	Splice_Site	SNP	T	TCGA-KN-8427-01A-11D-2310-10	3038904	105776029	29230487	88	3126											
NTM	50863	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	132081945	132081945	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattgtagagatttcttcaGatatctccattaatgaaggg	8	5	3	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	132081945	G	T	132081945	3	4	42	1	0	0	0	0	1	0	0	0	10778	942	33	5	526	5	NTM	11	132081945	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	26305916	132081945	2924571	89	3127											
A2M	2	bcgsc.ca	37	chr12	9253745	9253745	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggaaatactcactgtctTcctgcttcacaagcagtcca	7	12	3	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	9253745	T	C	9253745	3	2	42	1	0	0	0	0	1	0	0	0	4	1783	62	4	2967	4	A2M	12	9253745	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10		9253745	124598150	90	3128											
PRB2	653247	mdanderson.org	37	chr12	11546378	11546378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtgggggaccttgagGtttgttgcctccttgtgggg	19	6	0	1	rs200759746		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	11546378	G	A	11546378	3	1	42	1	0	0	0	0	1	0	0	0	12532	1261	44	3	620	3	PRB2	12	11546378	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	2292633	11546378	122305517	91	3129											
ALG10B	144245	broad.mit.edu	37	chr12	38714025	38714025	+	Frame_Shift_Del	DEL	T	T	-													gcagtatttccaacactttaTttttttaacttcctttatta					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	38714025	T	-	38714025	7	5	42	1	0	1	0	1	0	0	0	0	512	1500	52	0	442	0	ALG10B	12	38714025	Frame_Shift_Del	DEL	T	TCGA-KN-8427-01A-11D-2310-10	27167647	38714025	95137870	92	3130											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	53670499	53670499	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caaggcggtgcgggccgacaCtggacaggaacgcttcaaca	14	12	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	53670499	C	G	53670499	3	3	42	1	0	0	0	0	1	0	0	0	5292	565	20	5	1822	5	ESPL1	12	53670499	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	14956474	53670499	80181396	93	3131											
LATS2	26524	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr13	21557476	21557476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttatcaggcttgatgtctCggtggatgaagcccatcttg	12	8	3	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	21557476	C	T	21557476	3	4	42	1	0	0	0	0	1	0	0	0	8709	884	31	1	913	1	LATS2	13	21557476	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		21557476	93612402	94	3132											
KIF26A	26153	mdanderson.org	37	chr14	104642341	104642341	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcctcggggtcccggccAgtcagcatcatcagcagcat	12	15	3	0	rs2487304	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	104642341	A	G	104642341	2	3	42	1	0	0	0	0	0	0	0	1	8355	175	7	2		2	KIF26A	14	104642341	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10		104642341	2707199	95	3133											
AGBL1	123624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	86808034	86808034	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgtccccctcccaccacCcagcctatgttggaacgaaa	6	18	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	86808034	C	A	86808034	2	1	42	1	0	0	0	0	0	0	0	1	375	610	22	5		5	AGBL1	15	86808034	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		86808034	15723358	96	3134											
DNAH9	1770	hgsc.bcm.edu	37	chr17	11540080	11540080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgatctacagtcagcacGtccaggaggaagcagaactt	12	9	2	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	11540080	G	A	11540080	3	1	42	1	0	0	0	0	1	0	0	0	4645	1145	40	1	1799	1	DNAH9	17	11540080	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10		11540080	69655130	97	3135											
TMUB2	79089	ucsc.edu;mdanderson.org	37	chr17	42268154	42268154	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atcaattaccgccaattcttCacagcacctgccactgtctc	4	16	4	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	42268154	C	T	42268154	2	4	42	1	0	0	0	0	0	0	0	1	16369	825	29	4		4	TMUB2	17	42268154	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	30728074	42268154	38927056	98	3136											
SP2	6668	broad.mit.edu;mdanderson.org	37	chr17	46000417	46000417	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagccacctctaacaccacCtgtagcagccctgcatcccg	7	19	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	46000417	C	G	46000417	2	3	42	1	0	0	0	0	0	0	0	1	15062	668	24	5		5	SP2	17	46000417	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3732263	46000417	35194793	99	3137											
ITGA3	3675	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	48154412	48154412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cacccggacctcggagcgctCcggggaggacgcccacgagg	16	16	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	48154412	C	G	48154412	3	3	42	1	0	0	0	0	1	0	0	0	7938	855	30	5	2055	5	ITGA3	17	48154412	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	2153995	48154412	33040798	100	3138											
COL1A1	1277	broad.mit.edu;bcgsc.ca	37	chr17	48267232	48267232	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atactcacagggggaccagcGctgccgcgagcacctttggc	13	14	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	48267232	G	C	48267232	3	2	42	1	0	0	0	0	1	0	0	0	3706	1078	38	5	1853	5	COL1A1	17	48267232	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	112820	48267232	32927978	101	3139											
ABCA6	23460	mdanderson.org	37	chr17	67092895	67092895	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgcctgcccacaccagtaAgcagaagtgtagaggcctga	12	11	0	3	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	67092895	A	C	67092895	2	2	42	1	0	0	0	0	0	0	0	1	36	59	3	5		5	ABCA6	17	67092895	Silent	SNP	A	TCGA-KN-8427-01A-11D-2310-10	18825663	67092895	14102315	102	3140											
KIF19	124602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	72348987	72348987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcccaaaattaccccaGcaggaacctcactgacccca	5	18	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	72348987	G	A	72348987	3	1	42	1	0	0	0	0	1	0	0	0	8343	971	34	4	2066	4	KIF19	17	72348987	Missense_Mutation	SNP	G	TCGA-KN-8427-01A-11D-2310-10	5256092	72348987	8846223	103	3141											
BAIAP2	10458	broad.mit.edu	37	chr17	79080558	79080558	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctacagcctgcagcaagggAagagcagcagcacgggcaac	13	13	0	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	79080558	A	G	79080558	3	3	42	1	0	0	0	0	1	0	0	0	1305	247	9	4	1397	4	BAIAP2	17	79080558	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	6731571	79080558	2114652	104	3142											
FSCN2	25794	mdanderson.org	37	chr17	79495969	79495969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaccgtgcacctggccatcCacccgcaggcccacctgctg	11	19	0	0	rs143796236		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	79495969	C	T	79495969	3	4	42	1	0	0	0	0	1	0	0	0	6120	594	21	4	414	4	FSCN2	17	79495969	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	415411	79495969	1699241	105	3143											
DSG2	1829	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr18	29122688	29122688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacccagtttacaggggccaCaggcgctatcatgaccactg	10	13	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	29122688	C	T	29122688	3	4	42	1	0	0	0	0	1	0	0	0	4814	478	17	4	2261	4	DSG2	18	29122688	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		29122688	48954560	106	3144											
HCN2	610	mdanderson.org	37	chr19	613898	613898	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcacggcgagcgtgcgggcTgacacctactgccgcctcta	13	16	1	1	rs1054786	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	613898	T	C	613898	2	2	42	1	0	0	0	0	0	0	0	1	7055	1567	55	2		2	HCN2	19	613898	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10		613898	58515085	107	3145											
MUC16	94025	mdanderson.org	37	chr19	8999441	8999441	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtgtaggggcccagctcagtGatgctgtgggtcagctggct	17	9	2	1	rs80293661		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	8999441	G	A	8999441	2	1	42	1	0	0	0	0	0	0	0	1	10051	1280	45	4		4	MUC16	19	8999441	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	8385543	8999441	50129542	108	3146											
ATG4D	84971	bcgsc.ca	37	chr19	10654987	10654987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagttcctgacagcctggaAcaacgtcaagtacggtgagg	12	10	1	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	10654987	A	G	10654987	3	3	42	1	0	0	0	0	1	0	0	0	1103	43	2	2	223	2	ATG4D	19	10654987	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	1655546	10654987	48473996	109	3147											
ZNF563	147837	broad.mit.edu	37	chr19	12433413	12433423	+	Frame_Shift_Del	DEL	TTCCTGATGGT	TTCCTGATGGT	-													ccttacttatacagtccaggTtcctgatggtttcttgcatc					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	TTCCTGATGGT	TTCCTGATGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	12433423	TTCCTGATGGT	-	12433413	7	5	42	1	0	1	0	1	0	0	0	0	18099	1725	60	0	1326	0	ZNF563	19	12433413	Frame_Shift_Del	DEL	TTCCTGATGGT	TCGA-KN-8427-01A-11D-2310-10	1778426	12433413	46695570	110	3148	90	2									
ZNF563	147837	bcgsc.ca	37	chr19	12433414	12433424	+	Frame_Shift_Del	DEL	TTCCTGATGGT	TTCCTGATGGT	-													cttacttatacagtccaggtTcctgatggtttcttgcatca					novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	TTCCTGATGGT	TTCCTGATGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		-	12433424	TTCCTGATGGT	-	12433414	7	5	42	1	0	1	0	1	0	0	0	0	18099	1783	62	0	1327	0	ZNF563	19	12433414	Frame_Shift_Del	DEL	TTCCTGATGGT	TCGA-KN-8427-01A-11D-2310-10	1	12433414	46695569	111	3149	90	2									
ZNF799	90576	mdanderson.org	37	chr19	12502998	12502998	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttccatctttactttcaaCaaatctctctaacatacgac	2	12	4	0	rs17846016		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	12502998	C	T	12502998	3	4	42	1	0	0	0	0	1	0	0	0	18269	478	17	4	1721	4	ZNF799	19	12502998	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	69584	12502998	46625985	112	3150											
PRDX2	7001	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	12911998	12911998	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtccgacagcttcacctcTttgaaggcgccatcaaccac	7	15	3	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	12911998	T	C	12911998	2	2	42	1	0	0	0	0	0	0	0	1	12554	1606	56	2		2	PRDX2	19	12911998	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	409000	12911998	46216985	113	3151											
CYP4F11	57834	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	16025181	16025181	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgttctcttggtcgaaaCggaaggggtcgtagacctgc	14	8	1	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	16025181	C	T	16025181	3	4	42	1	0	0	0	0	1	0	0	0	4217	536	19	1	251	1	CYP4F11	19	16025181	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	3113183	16025181	43103802	114	3152											
UNC13A	23025	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	17756839	17756839	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agatggtttttgtccgtttcTtggtcttcccgacctggacg	11	10	2	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	17756839	T	G	17756839	3	3	42	1	0	0	0	0	1	0	0	0	17090	1609	56	5	3089	5	UNC13A	19	17756839	Missense_Mutation	SNP	T	TCGA-KN-8427-01A-11D-2310-10	1731658	17756839	41372144	115	3153											
ANKRD27	84079	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	33113433	33113433	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgacgccttggtagccccaGcgggcagcaatgtgtagagg	15	10	0	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	33113433	G	T	33113433	2	4	42	1	0	0	0	0	0	0	0	1	655	958	34	5		5	ANKRD27	19	33113433	Silent	SNP	G	TCGA-KN-8427-01A-11D-2310-10	15356594	33113433	26015550	116	3154											
CADM4	199731	ucsc.edu	37	chr19	44130965	44130965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcggtcccggtaccagCgcagggtggcagccggacgg	17	14	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	44130965	C	T	44130965	3	4	42	1	0	0	0	0	1	0	0	0	2594	768	27	1	720	1	CADM4	19	44130965	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	11017532	44130965	14998018	117	3155											
NAPA	8775	ucsc.edu	37	chr19	47991552	47991552	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgggtggggcttagcgcAggtcctcctcatcgccctgg	16	13	1	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	47991552	A	G	47991552	3	3	42	1	0	0	0	0	1	0	0	0	10239	188	7	2	10	2	NAPA	19	47991552	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	3860587	47991552	11137431	118	3156											
ZNF667	63934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	56952705	56952705	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcattacattcatagggTttctctccagtatgacttct	5	10	4	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	56952705	T	C	56952705	2	2	42	1	0	0	0	0	0	0	0	1	18179	1722	60	2		2	ZNF667	19	56952705	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	8961153	56952705	2176278	119	3157											
DDRGK1	65992	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	3172425	3172425	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttacctgagtgcgtaggcCcacctgggaagccaggtctt	13	12	1	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	3172425	C	A	3172425	3	1	42	1	0	0	0	0	1	0	0	0	4370	623	22	5	241	5	DDRGK1	20	3172425	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		3172425	59853095	120	3158											
WISP2	8839	mdanderson.org	37	chr20	43348735	43348735	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggggcaggacccggtggCcggggggccctgtgcctctg	19	15	1	0	rs2296530	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	43348735	C	A	43348735	2	1	42	1	0	0	0	0	0	0	0	1	17479	726	26	5		5	WISP2	20	43348735	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10	40176310	43348735	19676785	121	3159											
DIDO1	11083	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	61525220	61525220	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gcttggagcggtcctggggtCccggccggacactgtgacgg	18	12	0	1	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		A	61525220	C	A	61525220	3	1	42	1	0	0	0	0	1	0	0	0	4559	855	30	5	3872	5	DIDO1	20	61525220	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10	18176485	61525220	1500300	122	3160											
PFKL	5211	hgsc.bcm.edu	37	chr21	45744402	45744402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcatcaaacagtctgcctCggggaccaagcgccgtgtgt	12	14	2	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	45744402	C	T	45744402	3	4	42	1	0	0	0	0	1	0	0	0	11844	893	31	1	1745	1	PFKL	21	45744402	Missense_Mutation	SNP	C	TCGA-KN-8427-01A-11D-2310-10		45744402	2385493	123	3161											
TTLL12	23170	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	43565506	43565506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcaggacaggaattacCtggacgtccgtccagggaaa	14	9	0	0	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	43565506	C	T	43565506	2	4	42	1	0	0	0	0	0	0	0	1	16831	695	24	4		4	TTLL12	22	43565506	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		43565506	7739060	124	3162											
PRR5	55615	mdanderson.org	37	chr22	45132785	45132785	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggcgcggcggccggcggTaccagcatccgcaggcactc	17	15	0	0	rs6006865	byfrequency	TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		C	45132785	T	C	45132785	2	2	42	1	0	0	0	0	0	0	0	1	12689	1625	57	2		2	PRR5	22	45132785	Silent	SNP	T	TCGA-KN-8427-01A-11D-2310-10	1567279	45132785	6171781	125	3163											
XPNPEP2	7512	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	128886303	128886303	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agctataccatgtatgggatCtatgaaatgatacccaaggt	9	7	1	2	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		T	128886303	C	T	128886303	2	4	42	1	0	0	0	0	0	0	0	1	17549	903	32	4		4	XPNPEP2	23	128886303	Silent	SNP	C	TCGA-KN-8427-01A-11D-2310-10		128886303	26384257	126	3164											
GPR101	83550	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	136112626	136112626	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacataggagaaaatgatgAtgaagatcactttagcagct	10	6	1	5	novel		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		G	136112626	A	G	136112626	3	3	42	1	0	0	0	0	1	0	0	0	6679	333	12	4	321	4	GPR101	23	136112626	Missense_Mutation	SNP	A	TCGA-KN-8427-01A-11D-2310-10	7226323	136112626	19157934	127	3165											
ABCD1	215	mdanderson.org	37	chrX	153006092	153006093	+	Missense_Mutation	DNP	CA	CA	TG													cggactcagtggaggacatgCaaaggaagggctactcggag					rs201878013		TCGA-KN-8427-01A-11D-2310-10	TCGA-KN-8427-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	07e0e938-f61f-477a-92a2-5b7e74b78943	8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b		TG	153006093	CA	TG	153006092	3	4	42	1	0	0	0	0	1	0	0	0	60	711	25	4	1725	4	ABCD1	23	153006092	Missense_Mutation	DNP	CA	TCGA-KN-8427-01A-11D-2310-10	16893466	153006092	2264468	128	3166											
HES4	57801	broad.mit.edu;mdanderson.org	37	chr1	934923	934923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccgtcacctgcacgcgaCgcaggctccgcaggtgtctc	11	18	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	934923	C	T	934923	3	4	43	1	0	0	0	0	1	0	0	0	7126	536	19	1	398	1	HES4	1	934923	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		934923	248315698	1	3167											
AGRN	375790	broad.mit.edu	37	chr1	978746	978746	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgatcctgtgtgcggcagCgacggcgtcacatacggcag	14	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	978746	C	T	978746	2	4	43	1	0	0	0	0	0	0	0	1	397	767	27	1		1	AGRN	1	978746	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43823	978746	248271875	2	3168											
AGRN	375790	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	985016	985016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggacgtcaacaaccagCgcctggagcttggcattggg	14	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	985016	C	T	985016	3	4	43	1	0	0	0	0	1	0	0	0	397	768	27	1	4687	1	AGRN	1	985016	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6270	985016	248265605	3	3169											
ACAP3	116983	mdanderson.org	37	chr1	1229953	1229953	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtccgccaggccccaggcCtcggcctcagtgtccccgtc	11	20	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	1229953	C	T	1229953	2	4	43	1	0	0	0	0	0	0	0	1	120	680	24	4		4	ACAP3	1	1229953	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	244937	1229953	248020668	4	3170											
GABRD	2563	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	1956478	1956478	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggctacgcccgcaacttcCggcctggcatcggaggtgag	14	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	1956478	C	T	1956478	3	4	43	1	0	0	0	0	1	0	0	0	6221	643	23	1	172	1	GABRD	1	1956478	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	726525	1956478	247294143	5	3171											
TP73	7161	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	3599709	3599709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacggattccagcatggacGtcttccacctggagggcatg	13	11	1	0	rs146218192		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	3599709	G	A	3599709	3	1	43	1	0	0	0	0	1	0	0	0	16498	1145	40	1	157	1	TP73	1	3599709	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1643231	3599709	245650912	6	3172											
C1orf174	339448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	3807424	3807424	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccctgctgcacagaaacGccagcctcgctgcctggaag	11	17	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	3807424	G	A	3807424	2	1	43	1	0	0	0	0	0	0	0	1	2034	1074	38	1		1	C1orf174	1	3807424	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	207715	3807424	245443197	7	3173											
NPHP4	261734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	5951002	5951002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaatctgcagggtctgcaCggccaggtagcgggcaaagc	15	11	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	5951002	C	T	5951002	3	4	43	1	0	0	0	0	1	0	0	0	10660	536	19	1	2106	1	NPHP4	1	5951002	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2143578	5951002	243299619	8	3174											
ZBTB48	3104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	6646763	6646763	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacactgccaggtcttcacGtgctctgtgtgccaggagac	11	13	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6646763	G	A	6646763	2	1	43	1	0	0	0	0	0	0	0	1	17654	1132	40	1		1	ZBTB48	1	6646763	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	695761	6646763	242603858	9	3175											
SLC45A1	50651	broad.mit.edu	37	chr1	8385423	8385423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcaaggtttggaaggagaCgccctttcattcttgtcctg	10	11	3	1	rs200531790		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8385423	C	T	8385423	3	4	43	1	0	0	0	0	1	0	0	0	14738	536	19	1	469	1	SLC45A1	1	8385423	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1738660	8385423	240865198	10	3176											
RERE	473	mdanderson.org	37	chr1	8421203	8421203	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggcgctgtgggagcctgTggctggttaggggcctggga	20	8	0	0	rs13596	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	8421203	T	C	8421203	2	2	43	1	0	0	0	0	0	0	0	1	13323	1683	59	2		2	RERE	1	8421203	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	35780	8421203	240829418	11	3177											
UBE4B	10277	broad.mit.edu;bcgsc.ca	37	chr1	10155570	10155570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agtcagttctctcagcagctCgccctctaatagccttgaaa	7	13	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	10155570	C	T	10155570	3	4	43	1	0	0	0	0	1	0	0	0	16989	893	31	1	273	1	UBE4B	1	10155570	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1734367	10155570	239095051	12	3178											
CORT	1325	hgsc.bcm.edu;ucsc.edu	37	chr1	10510334	10510334	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccggggccacggccacCgctgccctgcccctggaggg	14	19	1	0	rs182159138	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	10510334	C	T	10510334	2	4	43	1	0	0	0	0	0	0	0	1	3789	639	23	1		1	CORT	1	10510334	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	354764	10510334	238740287	13	3179											
CASZ1	54897	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	10713846	10713846	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcccagcctcggtggcGgcagtggcggcagccaggga	19	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	10713846	G	A	10713846	2	1	43	1	0	0	0	0	0	0	0	1	2710	1103	39	1		1	CASZ1	1	10713846	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	203512	10713846	238536775	14	3180											
PRDM2	7799	broad.mit.edu;mdanderson.org	37	chr1	14107224	14107224	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccctccaccctgtcccccGgtattaactgttgccactcc	5	20	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	14107224	G	A	14107224	2	1	43	1	0	0	0	0	0	0	0	1	12547	1103	39	1		1	PRDM2	1	14107224	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3393378	14107224	235143397	15	3181											
PLEKHM2	23207	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	16053893	16053893	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcggaccggctctccCggggatgccccggagaggcc	14	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	16053893	C	T	16053893	2	4	43	1	0	0	0	0	0	0	0	1	12161	639	23	1		1	PLEKHM2	1	16053893	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1946669	16053893	233196728	16	3182											
CROCC	9696	mdanderson.org	37	chr1	17270751	17270751	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgcagtgcaggatggcgcGcgggtgcgccgggagcttga	20	10	0	1	rs12025984	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	17270751	G	A	17270751	2	1	43	1	0	0	0	0	0	0	0	1	3922	1074	38	1		1	CROCC	1	17270751	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1216858	17270751	231979870	17	3183											
PADI4	23569	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	17664602	17664602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actgtgacagagacaatctcGaatcttctgccatggactgc	9	11	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	17664602	G	A	17664602	3	1	43	1	0	0	0	0	1	0	0	0	11459	1059	37	1	496	1	PADI4	1	17664602	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	393851	17664602	231586019	18	3184											
HTR6	3362	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	20005813	20005813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttcttcaacatcgacccCgcggagcccgagctgcggcc	10	16	2	0	rs201218739		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20005813	C	T	20005813	2	4	43	1	0	0	0	0	0	0	0	1	7512	639	23	1		1	HTR6	1	20005813	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2341211	20005813	229244808	19	3185											
TMCO4	255104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	20067419	20067419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggccagggcagcccacGgggcactgaaggtgcctggg	19	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	20067419	G	A	20067419	3	1	43	1	0	0	0	0	1	0	0	0	16102	1116	39	1	1035	1	TMCO4	1	20067419	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	61606	20067419	229183202	20	3186											
ALPL	249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	21887145	21887145	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaagaccccaagtactggCgagaccaagcgcaagagaca	11	11	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	21887145	C	T	21887145	4	4	43	1	0	0	0	0	0	1	0	0	547	760	27	1	94	1	ALPL	1	21887145	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1819726	21887145	227363476	21	3187											
EPHA8	2046	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	22902937	22902937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctctactacctggagtcGgaccgcgacctgggggccag	13	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	22902937	G	A	22902937	2	1	43	1	0	0	0	0	0	0	0	1	5212	1103	39	1		1	EPHA8	1	22902937	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1015792	22902937	226347684	22	3188											
SEPN1	57190	broad.mit.edu;bcgsc.ca	37	chr1	26140634	26140634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagaagtacagcttccccGtggagatgatgatctgcctg	13	9	1	4	rs138259627		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	26140634	G	A	26140634	3	1	43	1	0	0	0	0	1	0	0	0	14153	1145	40	1	1613	1	SEPN1	1	26140634	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3237697	26140634	223109987	23	3189											
SERINC2	347735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	31899552	31899552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtcgatcgcggccgtggCgctgatgttcatgtactaca	13	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	31899552	C	T	31899552	3	4	43	1	0	0	0	0	1	0	0	0	14177	768	27	1	684	1	SERINC2	1	31899552	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5758918	31899552	217351069	24	3190											
BAI2	576	broad.mit.edu	37	chr1	32222290	32222290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgcagcgagaaggcccCgtagagcacacccgaggcca	13	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	32222290	C	T	32222290	3	4	43	1	0	0	0	0	1	0	0	0	1303	652	23	1	4729	1	BAI2	1	32222290	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	322738	32222290	217028331	25	3191											
CCDC28B	79140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	32667610	32667610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccccaggcacactacGgagggtccctgtgcctacca	11	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	32667610	G	A	32667610	3	1	43	1	0	0	0	0	1	0	0	0	2829	1116	39	1	76	1	CCDC28B	1	32667610	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	445320	32667610	216583011	26	3192											
AK2	204	mdanderson.org	37	chr1	33478959	33478959	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggcggattttcaaggcCttttcattatcatctgatcg	9	9	4	1	rs72884305		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	33478959	C	G	33478959	3	3	43	1	0	0	0	0	1	0	0	0	440	680	24	5	189	5	AK2	1	33478959	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	811349	33478959	215771662	27	3193											
NCDN	23154	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr1	36028957	36028957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggtgctgcctgacagcGtggagattggcctgcagacc	14	13	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36028957	G	A	36028957	3	1	43	1	0	0	0	0	1	0	0	0	10293	1145	40	1	1558	1	NCDN	1	36028957	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2549998	36028957	213221664	28	3194											
EPHA10	284656	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	38227629	38227629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagttccacgaagatgcGctgcccgcggccacggctta	12	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	38227629	G	A	38227629	3	1	43	1	0	0	0	0	1	0	0	0	5205	1087	38	1	2826	1	EPHA10	1	38227629	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2198672	38227629	211022992	29	3195											
INPP5B	3633	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	38345781	38345781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatcccagtcgtcagagcccGtatcatacttgtaagtaggc	9	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	38345781	G	A	38345781	3	1	43	1	0	0	0	0	1	0	0	0	7816	1145	40	1	1264	1	INPP5B	1	38345781	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	118152	38345781	210904840	30	3196											
MACF1	23499	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	39951259	39951259	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgggctgggagtcgagcCgggagtcgagccagcagccg	19	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	39951259	C	T	39951259	2	4	43	1	0	0	0	0	0	0	0	1	9217	639	23	1		1	MACF1	1	39951259	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1605478	39951259	209299362	31	3197											
NT5C1A	84618	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	40125029	40125029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcagggtcttgagagcccGggccccggaactggctgcac	16	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	40125029	G	A	40125029	3	1	43	1	0	0	0	0	1	0	0	0	10764	1115	39	1	239	1	NT5C1A	1	40125029	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	173770	40125029	209125592	32	3198											
HIVEP3	59269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	42047504	42047504	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctgaggctgacctccGcatctctcgggcatgtgggt	13	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42047504	G	A	42047504	3	1	43	1	0	0	0	0	1	0	0	0	7246	1086	38	1	4279	1	HIVEP3	1	42047504	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1922475	42047504	207203117	33	3199											
GUCA2B	2981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	42620453	42620453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcccagagcctcctgcccGccgtgtgccaccaccctgct	10	20	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42620453	G	A	42620453	3	1	43	1	0	0	0	0	1	0	0	0	6950	1087	38	1	199	1	GUCA2B	1	42620453	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	572949	42620453	206630168	34	3200											
ST3GAL3	6487	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	44303969	44303969	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgcttcagccttgatgacGgccatcttcccccggtaagt	9	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44303969	G	A	44303969	2	1	43	1	0	0	0	0	0	0	0	1	15316	1103	39	1		1	ST3GAL3	1	44303969	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1683516	44303969	204946652	35	3201											
MAST2	23139	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	46493480	46493480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcctcatgagtctgacaaCgaacttgtatgagggtcata	11	8	3	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	46493480	C	T	46493480	3	4	43	1	0	0	0	0	1	0	0	0	9402	536	19	1	2063	1	MAST2	1	46493480	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2189511	46493480	202757141	36	3202											
BEND5	79656	broad.mit.edu	37	chr1	49208391	49208391	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaagtgctccgtaactcCggctcgggctcgagacattc	11	13	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49208391	C	A	49208391	2	1	43	1	0	0	0	0	0	0	0	1	1405	639	23	5		5	BEND5	1	49208391	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2714911	49208391	200042230	37	3203											
SLC1A7	6512	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	53580601	53580601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggtgaggacgcccaggCggctagaggtcttggcatcc	15	13	1	2	rs139757854	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	53580601	C	T	53580601	3	4	43	1	0	0	0	0	1	0	0	0	14535	768	27	1	1458	1	SLC1A7	1	53580601	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4372210	53580601	195670020	38	3204											
C1orf168	199920	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	57185885	57185885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acatatcactagattttgttCggtggtatcaatgacttcca	7	8	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	57185885	C	T	57185885	3	4	43	1	0	0	0	0	1	0	0	0	2031	893	31	1	106	1	C1orf168	1	57185885	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3605284	57185885	192064736	39	3205											
NFIA	4774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	61818215	61818215	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaggagcaatgaggaggtCtttacccagcacatcctcta	9	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	61818215	C	T	61818215	3	4	43	1	0	0	0	0	1	0	0	0	10449	913	32	4	958	4	NFIA	1	61818215	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4632330	61818215	187432406	40	3206											
KANK4	163782	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	62739646	62739646	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgctccctagctttgAtttcctcttcctgctgctgg	7	13	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	62739646	A	T	62739646	3	4	43	1	0	0	0	0	1	0	0	0	8040	333	12	5	1889	5	KANK4	1	62739646	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	921431	62739646	186510975	41	3207											
DOCK7	85440	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	62979274	62979274	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattcgttcaaacactttttTcccctaaaatgtaaacatta	2	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	62979274	T	C	62979274	3	2	43	1	0	0	0	0	1	0	0	0	4729	1792	62	4	2371	4	DOCK7	1	62979274	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	239628	62979274	186271347	42	3208											
CACHD1	57685	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	65146953	65146953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggtagaaatgtcagtgcGtatgtccaacctggagaatg	13	6	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	65146953	G	A	65146953	3	1	43	1	0	0	0	0	1	0	0	0	2562	1145	40	1	3364	1	CACHD1	1	65146953	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2167679	65146953	184103668	43	3209											
FUBP1	8880	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	78428480	78428480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttcttctatgagttgcCgagcatagtctatctgttgt	8	8	5	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	78428480	C	T	78428480	3	4	43	1	0	0	0	0	1	0	0	0	6144	652	23	1	643	1	FUBP1	1	78428480	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	13281527	78428480	170822141	44	3210											
SH3GLB1	51100	mdanderson.org	37	chr1	87181510	87181510	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaatatggacagaaaaaaTaatgaaacaaactgaagtgt	7	4	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	87181510	T	C	87181510	3	2	43	1	0	0	0	0	1	0	0	0	14351	1406	49	4	182	4	SH3GLB1	1	87181510	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	8753030	87181510	162069111	45	3211											
HFM1	164045	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	91809065	91809065	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attcagattcttcaaacataAttctgtttaattatagaaaa	3	5	4	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	91809065	A	G	91809065	2	3	43	1	0	0	0	0	0	0	0	1	7141	98	4	4		4	HFM1	1	91809065	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	4627555	91809065	157441556	46	3212											
VCAM1	7412	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	101186203	101186203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgaggggaccacatctaCgctgacaatgaatcctgtta	10	9	1	3	rs142501320		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	101186203	C	T	101186203	3	4	43	1	0	0	0	0	1	0	0	0	17243	536	19	1	242	1	VCAM1	1	101186203	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9377138	101186203	148064418	47	3213											
KIAA1324	57535	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	109735386	109735386	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggttactatattgacCgagattcaggaacctgccac	9	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	109735386	C	T	109735386	4	4	43	1	0	0	0	0	0	1	0	0	8284	644	23	1	1891	1	KIAA1324	1	109735386	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8549183	109735386	139515235	48	3214											
GSTM2	2946	broad.mit.edu	37	chr1	110211966	110211966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagagcaacgccatcctgCggtacattgcccgcaagcac	9	17	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	110211966	C	T	110211966	3	4	43	1	0	0	0	0	1	0	0	0	6896	759	27	1	246	1	GSTM2	1	110211966	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	476580	110211966	139038655	49	3215											
SLC6A17	388662	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	110709687	110709687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtggctggtgaggcaggcGgcaagcagaaggcggtggag	21	6	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	110709687	G	A	110709687	3	1	43	1	0	0	0	0	1	0	0	0	14778	1116	39	1	138	1	SLC6A17	1	110709687	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	497721	110709687	138540934	50	3216											
IGSF3	3321	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	117150686	117150686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttcccgctatcttcctggCggaggtggtagatcttcagc	11	11	3	1	rs202203327	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	117150686	C	T	117150686	3	4	43	1	0	0	0	0	1	0	0	0	7662	768	27	1	2576	1	IGSF3	1	117150686	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6440999	117150686	132099935	51	3217											
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	144879218	144879218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcatcctcatcagggacaCtatgaggtgaagacccctcc	8	15	3	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	144879218	C	T	144879218	3	4	43	1	0	0	0	0	1	0	0	0	11722	565	20	4	2880	4	PDE4DIP	1	144879218	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	27728532	144879218	104371403	52	3218											
NBPF10	100132406	mdanderson.org	37	chr1	145299824	145299824	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gagatgaacattctagaaatCaatgagaaattgcgccccca	8	9	2	4	rs9424711		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	145299824	C	G	145299824	3	3	43	1	0	0	0	0	1	0	0	0	10271	816	29	5	895	5	NBPF10	1	145299824	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	420606	145299824	103950797	53	3219											
C1orf51	148523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	150259023	150259023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgcaacccccctctcaGctccccaggtactatctcct	4	18	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	150259023	G	A	150259023	3	1	43	1	0	0	0	0	1	0	0	0	2063	971	34	4	833	4	C1orf51	1	150259023	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4959199	150259023	98991598	54	3220											
RPRD2	23248	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	150445515	150445515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacggccctggccttagccGtgtacgagagagcctcaccc	11	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	150445515	G	A	150445515	3	1	43	1	0	0	0	0	1	0	0	0	13712	1145	40	1	4133	1	RPRD2	1	150445515	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	186492	150445515	98805106	55	3221											
HORMAD1	84072	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	150679259	150679259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatcaccatccttaaaacCgggaggctggtaatctgggg	11	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	150679259	C	T	150679259	3	4	43	1	0	0	0	0	1	0	0	0	7344	652	23	1	634	1	HORMAD1	1	150679259	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	233744	150679259	98571362	56	3222											
SELENBP1	8991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	151339349	151339349	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccatgtccccttcacctcGaacgtctccccatccagcag	5	20	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	151339349	G	A	151339349	2	1	43	1	0	0	0	0	0	0	0	1	14111	1049	37	1		1	SELENBP1	1	151339349	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	660090	151339349	97911272	57	3223											
POGZ	23126	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	151377515	151377515	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgagttaatgttgccatcGgggccaggcagaacactagc	14	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	151377515	G	A	151377515	2	1	43	1	0	0	0	0	0	0	0	1	12266	1103	39	1		1	POGZ	1	151377515	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	38166	151377515	97873106	58	3224											
SNX27	81609	broad.mit.edu	37	chr1	151641045	151641045	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaccattcgaaagtggctTtttacaacagaagaagaaat	8	6	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	151641045	T	C	151641045	2	2	43	1	0	0	0	0	0	0	0	1	14995	1828	64	4		4	SNX27	1	151641045	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	263530	151641045	97609576	59	3225											
S100A4	6275	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	153516294	153516294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaattcgttacacatcatggCgatgcaggacaggaagacac	11	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	153516294	C	T	153516294	3	4	43	1	0	0	0	0	1	0	0	0	13875	768	27	1	62	1	S100A4	1	153516294	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1875249	153516294	95734327	60	3226											
UBAP2L	9898	broad.mit.edu	37	chr1	154209571	154209571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaatagcagcggcaataCgtggaacaacactggccact	11	11	0	0	rs147740832		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	154209571	C	T	154209571	3	4	43	1	0	0	0	0	1	0	0	0	16944	536	19	1	688	1	UBAP2L	1	154209571	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	693277	154209571	95041050	61	3227											
YY1AP1	55249	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	155629537	155629537	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggaagagttgtttagagActcctggatgccctgaggga	16	6	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	155629537	A	G	155629537	3	3	43	1	0	0	0	0	1	0	0	0	17614	275	10	2	92	2	YY1AP1	1	155629537	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1419966	155629537	93621084	62	3228											
ARHGEF2	9181	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	155921539	155921539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attcccatctcacctcttgcGgtgatctcagctgatttcca	6	14	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	155921539	G	A	155921539	3	1	43	1	0	0	0	0	1	0	0	0	905	1116	39	1	779	1	ARHGEF2	1	155921539	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	292002	155921539	93329082	63	3229											
MRPL24	79590	hgsc.bcm.edu;bcgsc.ca	37	chr1	156708172	156708172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaccacccagtttcgctgcCggataacttgaaccactttg	8	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	156708172	C	T	156708172	3	4	43	1	0	0	0	0	1	0	0	0	9868	652	23	1	424	1	MRPL24	1	156708172	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	786633	156708172	92542449	64	3230											
SH2D2A	9047	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	156785800	156785800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggtttccactcaccgCagtgtagcccaggttctggc	10	16	2	0	rs146718843	byfrequency;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	156785800	C	T	156785800	3	4	43	1	0	0	0	0	1	0	0	0	14329	710	25	4	1106	4	SH2D2A	1	156785800	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	77628	156785800	92464821	65	3231											
INSRR	3645	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	156814312	156814312	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagccattgccagccagtgaGgttgccctaaccctggcaga	12	13	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	156814312	G	T	156814312	2	4	43	1	0	0	0	0	0	0	0	1	7835	987	35	5		5	INSRR	1	156814312	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	28512	156814312	92436309	66	3232											
IGSF9	57549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	159898623	159898623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtgggccccatcacaaagCgcccgtctgggccccggcaa	12	17	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	159898623	C	T	159898623	3	4	43	1	0	0	0	0	1	0	0	0	7666	768	27	1	996	1	IGSF9	1	159898623	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3084311	159898623	89351998	67	3233											
PPOX	5498	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	161139815	161139815	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccatctgcctgtccagGtatgataaagggacggagag	14	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	161139815	G	T	161139815	5	4	43	1	0	0	0	0	0	0	1	0	12433	1275	44	5	1018	5	PPOX	1	161139815	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1241192	161139815	88110806	68	3234											
DDR2	4921	hgsc.bcm.edu	37	chr1	162724541	162724541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctggtggggacccaggggCgccatgcaggaggtcatggc	18	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	162724541	C	T	162724541	3	4	43	1	0	0	0	0	1	0	0	0	4369	768	27	1	323	1	DDR2	1	162724541	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1584726	162724541	86526080	69	3235											
DUSP27	92235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	167088687	167088687	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgagttcctggatgaggcGctgctgacttacagaggtga	14	8	1	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	167088687	G	A	167088687	2	1	43	1	0	0	0	0	0	0	0	1	4861	1074	38	1		1	DUSP27	1	167088687	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4364146	167088687	82161934	70	3236											
TBX19	9095	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	168282043	168282043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggagcatttctcctcGgaaacccagctgtgacttca	8	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	168282043	G	A	168282043	3	1	43	1	0	0	0	0	1	0	0	0	15758	1117	39	1	1180	1	TBX19	1	168282043	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1193356	168282043	80968578	71	3237											
C1orf114	57821	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	169391220	169391220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtccttgaacttaagttttCgctcccttttatcattcacc	5	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	169391220	C	T	169391220	3	4	43	1	0	0	0	0	1	0	0	0	2006	884	31	1	1093	1	C1orf114	1	169391220	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1109177	169391220	79859401	72	3238											
TOR3A	64222	ucsc.edu;mdanderson.org	37	chr1	179057117	179057117	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcatcttcgatgaagcGgagaagctgcacccagggct	12	11	2	2	rs12092348	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	179057117	G	A	179057117	2	1	43	1	0	0	0	0	0	0	0	1	16481	1103	39	1		1	TOR3A	1	179057117	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9665897	179057117	70193504	73	3239											
QSOX1	5768	broad.mit.edu;hgsc.bcm.edu	37	chr1	180135639	180135639	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttcagcctggaggccggcCctgtatctcgccgccctgga	12	16	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	180135639	C	A	180135639	2	1	43	1	0	0	0	0	0	0	0	1	12975	610	22	5		5	QSOX1	1	180135639	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1078522	180135639	69114982	74	3240											
TPR	7175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	186289518	186289518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatcttcaggtggcccaaacCggaatctagggacaccagca	10	12	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	186289518	C	T	186289518	3	4	43	1	0	0	0	0	1	0	0	0	16521	652	23	1	621	1	TPR	1	186289518	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6153879	186289518	62961103	75	3241											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	201029943	201029943	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcatactgtacacattggCgctgtgacacatacaacagg	11	10	0	1	rs1800559	bycluster	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	201029943	C	T	201029943	3	4	43	1	0	0	0	0	1	0	0	0	2572	782	27	1	2440	1	CACNA1S	1	201029943	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	14740425	201029943	48220678	76	3242											
CACNA1S	779	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	201060823	201060823	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cccttgaagagctccagcccGatgatggcatagatgatgac	11	11	0	6	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	201060823	G	A	201060823	2	1	43	1	0	0	0	0	0	0	0	1	2572	1048	37	1		1	CACNA1S	1	201060823	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	30880	201060823	48189798	77	3243											
CNTN2	6900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	205041226	205041226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggctggcactgggcctgCcagcccttctgccaacgcca	12	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	205041226	C	T	205041226	3	4	43	1	0	0	0	0	1	0	0	0	3670	739	26	3	2770	3	CNTN2	1	205041226	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3980403	205041226	44209395	78	3244											
PLXNA2	5362	broad.mit.edu;bcgsc.ca	37	chr1	208383788	208383788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtccagtccacagaagTtatcatcgatggggacaggc	12	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	208383788	T	C	208383788	3	2	43	1	0	0	0	0	1	0	0	0	12200	1725	60	2	4596	2	PLXNA2	1	208383788	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3342562	208383788	40866833	79	3245											
CDC42BPA	8476	ucsc.edu;bcgsc.ca	37	chr1	227504801	227504801	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtatatccagtaatgtctccAcactgaagcactgcccattg	7	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	227504801	A	G	227504801	3	3	43	1	0	0	0	0	1	0	0	0	3101	159	6	2	5220	2	CDC42BPA	1	227504801	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	19121013	227504801	21745820	80	3246											
JMJD4	65094	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	227921193	227921193	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgtgatctccaagggtggGccagcaagctggttccgtgg	16	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	227921193	G	A	227921193	2	1	43	1	0	0	0	0	0	0	0	1	8012	1190	42	3		3	JMJD4	1	227921193	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	416392	227921193	21329428	81	3247											
TARBP1	6894	broad.mit.edu	37	chr1	234527364	234527364	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagagcagctgctgcctggTgtactcccagatcagcaggg	14	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	234527364	T	C	234527364	3	2	43	1	0	0	0	0	1	0	0	0	15656	1696	59	2	44	2	TARBP1	1	234527364	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	6606171	234527364	14723257	82	3248											
HEATR1	55127	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	236762781	236762781	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atatgtcattcagcaattatAccttaactggcaacaaccag	5	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	236762781	A	G	236762781	5	3	43	1	0	0	0	0	0	0	1	0	7085	405	14	2	6099	2	HEATR1	1	236762781	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2235417	236762781	12487840	83	3249											
NLRP3	114548	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	247587215	247587215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgaagacaggaatgcccGtctgggtgagagtgtgagcc	15	8	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	247587215	G	A	247587215	3	1	43	1	0	0	0	0	1	0	0	0	10557	1145	40	1	480	1	NLRP3	1	247587215	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10824434	247587215	1663406	84	3250											
TRIM58	25893	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	248031300	248031300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggctggaagcagagaacaTccccatggaactgaagacag	12	9	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	248031300	T	C	248031300	3	2	43	1	0	0	0	0	1	0	0	0	16636	1435	50	4	824	4	TRIM58	1	248031300	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	444085	248031300	1219321	85	3251											
OR2M3	127062	broad.mit.edu;bcgsc.ca	37	chr1	248366613	248366613	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaccgtacccaagatgGccttcaactacctgtctggc	8	16	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	248366613	G	A	248366613	3	1	43	1	0	0	0	0	1	0	0	0	11090	1203	42	3	246	3	OR2M3	1	248366613	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	335313	248366613	884008	86	3252											
PGBD2	267002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	249211775	249211775	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatctaggaggcagtatggTaataaaatttgtggatgcgc	14	4	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	249211775	T	C	249211775	3	2	43	1	0	0	0	0	1	0	0	0	11861	1638	57	2	998	2	PGBD2	1	249211775	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	845162	249211775	38846	87	3253											
MYT1L	23040	hgsc.bcm.edu;mdanderson.org	37	chr2	1896005	1896005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgctgctgctgctgggcGcgtagctgctggtgctgctg	18	10	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1896005	G	A	1896005	3	1	43	1	0	0	0	0	1	0	0	0	10185	1087	38	1	1517	1	MYT1L	2	1896005	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1896005	241303368	88	3254											
NT5C1B	93034	ucsc.edu;mdanderson.org	37	chr2	18745215	18745215	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaaggaaaagagcttcGtctatctctagaccccagcg	9	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	18745215	G	A	18745215	2	1	43	1	0	0	0	0	0	0	0	1	10765	1136	40	1		1	NT5C1B	2	18745215	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16849210	18745215	224454158	89	3255											
GDF7	151449	broad.mit.edu	37	chr2	20871061	20871061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccatggcaccagacgcggCgccggcctcctgctgtgtgc	13	17	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20871061	C	T	20871061	3	4	43	1	0	0	0	0	1	0	0	0	6374	768	27	1	1235	1	GDF7	2	20871061	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2125846	20871061	222328312	90	3256											
DTNB	1838	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	25799755	25799755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttgctgtgagggccgccGgcatggccacgccaaaagca	15	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	25799755	G	A	25799755	2	1	43	1	0	0	0	0	0	0	0	1	4826	1103	39	1		1	DTNB	2	25799755	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4928694	25799755	217399618	91	3257											
C2orf16	84226	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	27802448	27802448	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaagaagacaaactcaacGttcaatggtatatcccaaga	6	8	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	27802448	G	A	27802448	2	1	43	1	0	0	0	0	0	0	0	1	2177	1132	40	1		1	C2orf16	2	27802448	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2002693	27802448	215396925	92	3258											
EHD3	30845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	31484520	31484520	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctggccgagatctatggcCggatcgagcgggagcaccag	15	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	31484520	C	T	31484520	3	4	43	1	0	0	0	0	1	0	0	0	5016	643	23	1	1039	1	EHD3	2	31484520	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3682072	31484520	211714853	93	3259											
BIRC6	57448	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	32713733	32713733	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaagaaaatggagcagacAtatttttatataatgctaat	6	4	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	32713733	A	G	32713733	3	3	43	1	0	0	0	0	1	0	0	0	1443	217	8	4	8213	4	BIRC6	2	32713733	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1229213	32713733	210485640	94	3260											
CRIM1	51232	broad.mit.edu	37	chr2	36691711	36691711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcttatgtggtttccccGtgtgtgaggtgggatccact	14	9	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36691711	G	A	36691711	3	1	43	1	0	0	0	0	1	0	0	0	3902	1145	40	1	922	1	CRIM1	2	36691711	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3977978	36691711	206507662	95	3261											
KCNG3	170850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	42720408	42720408	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcgcagcttgccgtggccGcgcacgtagagcaggatgaa	15	11	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42720408	G	A	42720408	2	1	43	1	0	0	0	0	0	0	0	1	8090	1074	38	1		1	KCNG3	2	42720408	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6028697	42720408	200478965	96	3262											
OXER1	165140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	42990143	42990143	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctagaggcctcccggtagcGccactgcctggagggttggt	15	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42990143	G	A	42990143	3	1	43	1	0	0	0	0	1	0	0	0	11410	1087	38	1	98	1	OXER1	2	42990143	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	269735	42990143	200209230	97	3263											
OXER1	165140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	42990181	42990181	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggagctctcgtcgctcActgggccctgccggccccgc	14	17	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	42990181	A	G	42990181	3	3	43	1	0	0	0	0	1	0	0	0	11410	159	6	2	136	2	OXER1	2	42990181	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	38	42990181	200209192	98	3264											
PPM1B	5495	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	44428691	44428691	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaattgatgaatacatgcGtaacttttcagacctcagaa	7	7	2	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44428691	G	A	44428691	3	1	43	1	0	0	0	0	1	0	0	0	12421	1145	40	1	355	1	PPM1B	2	44428691	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1438510	44428691	198770682	99	3265											
MSH6	2956	bcgsc.ca	37	chr2	48030692	48030693	+	Frame_Shift_Ins	INS	-	-	T													atccttgcattacgaagactINSttttttggagatgattttat					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	48030693	-	T	48030692	7	5	43	1	0	1	1	0	0	0	0	0	9952	1596	56	0	3324	0	MSH6	2	48030692	Frame_Shift_Ins	INS	-	TCGA-KN-8428-01A-11D-2310-10	3602001	48030692	195168681	100	3266											
SPTBN1	6711	broad.mit.edu	37	chr2	54876812	54876812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacattgggcaggagcgcGtggacacggtcaatcacctg	15	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54876812	G	A	54876812	3	1	43	1	0	0	0	0	1	0	0	0	15219	1145	40	1	5474	1	SPTBN1	2	54876812	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6846120	54876812	188322561	101	3267											
RTN4	57142	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	55254295	55254295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaggatttgctactattaCggcagattctgcttttggag	10	8	1	1	rs144622313	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	55254295	C	T	55254295	3	4	43	1	0	0	0	0	1	0	0	0	13823	536	19	1	2704	1	RTN4	2	55254295	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	377483	55254295	187945078	102	3268											
C2orf63	130162	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	55408743	55408743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attggtaactaaatctaaccGtttttctgataatccacatt	4	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	55408743	G	A	55408743	3	1	43	1	0	0	0	0	1	0	0	0	2202	1144	40	1	632	1	C2orf63	2	55408743	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	154448	55408743	187790630	103	3269											
ETAA1	54465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	67637129	67637129	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggagaatggctaaagcaCgagcctcatctgtaaatgca	10	9	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	67637129	C	T	67637129	4	4	43	1	0	0	0	0	0	1	0	0	5306	528	19	1	2762	1	ETAA1	2	67637129	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12228386	67637129	175562244	104	3270											
GFPT1	2673	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	69583647	69583647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgtgccaactgcttgccCgggaaaatgaacacttttaa	8	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	69583647	C	T	69583647	3	4	43	1	0	0	0	0	1	0	0	0	6401	652	23	1	1511	1	GFPT1	2	69583647	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1946518	69583647	173615726	105	3271											
DYSF	8291	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	71887760	71887760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggataactacatcccctgcaCgctggagcccgtatttggaa	10	12	0	0	rs144383140		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	71887760	C	T	71887760	3	4	43	1	0	0	0	0	1	0	0	0	4896	536	19	1	5298	1	DYSF	2	71887760	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2304113	71887760	171311613	106	3272											
EGR4	1961	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	73520376	73520376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcaattcagcgctgggttCggcgcaacagccttcagtgg	15	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73520376	C	T	73520376	3	4	43	1	0	0	0	0	1	0	0	0	5011	893	31	1	1398	1	EGR4	2	73520376	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1632616	73520376	169678997	107	3273											
TET3	200424	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	74327959	74327959	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaggctgttcccacagaCgcccaccaccccactcctca	6	21	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	74327959	C	T	74327959	2	4	43	1	0	0	0	0	0	0	0	1	15875	535	19	1		1	TET3	2	74327959	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	807583	74327959	168871414	108	3274											
TCF7L1	83439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	85533623	85533623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtactacgagctggccCggaaggagcggcagcttcac	13	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	85533623	C	T	85533623	3	4	43	1	0	0	0	0	1	0	0	0	15801	643	23	1	1236	1	TCF7L1	2	85533623	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11205664	85533623	157665750	109	3275											
POLR1A	25885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	86315989	86315989	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgctctcacacacgttcTttacctgtttttttaaaaaa	3	10	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	86315989	T	G	86315989	3	3	43	1	0	0	0	0	1	0	0	0	12289	1609	56	5	4737	5	POLR1A	2	86315989	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	782366	86315989	156883384	110	3276											
FAM178B	51252	bcgsc.ca	37	chr2	97568436	97568436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccacaaggctgagctggcttCgaagccgcctgggggaaaag	15	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	97568436	C	T	97568436	3	4	43	1	0	0	0	0	1	0	0	0	5547	884	31	1	519	1	FAM178B	2	97568436	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11252447	97568436	145630937	111	3277											
LYG2	254773	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	99860551	99860551	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtagcctgtgaaaggTgctctttgctatcccaggca	10	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	99860551	T	C	99860551	3	2	43	1	0	0	0	0	1	0	0	0	9178	1696	59	2	215	2	LYG2	2	99860551	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2292115	99860551	143338822	112	3278											
AFF3	3899	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	100210166	100210166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgatcctgcttagcccccGcgtgcggcgcttctcgcagg	13	16	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	100210166	G	A	100210166	3	1	43	1	0	0	0	0	1	0	0	0	358	1086	38	1	1767	1	AFF3	2	100210166	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	349615	100210166	142989207	113	3279											
IL1R1	3554	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	102789203	102789203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catcacagtgcttaatatatCggaaattgaaagtagatttt	7	5	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	102789203	C	T	102789203	3	4	43	1	0	0	0	0	1	0	0	0	7719	893	31	1	922	1	IL1R1	2	102789203	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2579037	102789203	140410170	114	3280											
MALL	7851	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	110849317	110849317	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatactatgtgggtggcggCtaccatggtccagaccaaga	13	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	110849317	C	A	110849317	3	1	43	1	0	0	0	0	1	0	0	0	9278	797	28	5	337	5	MALL	2	110849317	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8060114	110849317	132350056	115	3281											
BUB1	699	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	111416221	111416221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtgtgcacggtgggtgAtggctgcactttggatggcg	17	6	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	111416221	A	G	111416221	3	3	43	1	0	0	0	0	1	0	0	0	1579	333	12	4	1938	4	BUB1	2	111416221	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	566904	111416221	131783152	116	3282											
TMEM177	80775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	120438454	120438454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtcccctgtggcggaccGcagcatttgtgcagagacac	13	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	120438454	G	A	120438454	3	1	43	1	0	0	0	0	1	0	0	0	16198	1087	38	1	27	1	TMEM177	2	120438454	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9022233	120438454	122760919	117	3283											
BIN1	274	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	127810999	127810999	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcagacgtgcagcttaccTcccagaggtcccatggaatt	11	12	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	127810999	T	C	127810999	3	2	43	1	0	0	0	0	1	0	0	0	1437	1565	54	2	543	2	BIN1	2	127810999	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	7372545	127810999	115388374	118	3284											
MYO7B	4648	broad.mit.edu;bcgsc.ca	37	chr2	128324245	128324245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctccatcctggtggccGtcaacccgttccaggtgctg	12	15	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	128324245	G	A	128324245	3	1	43	1	0	0	0	0	1	0	0	0	10161	1145	40	1	327	1	MYO7B	2	128324245	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	513246	128324245	114875128	119	3285											
RAB3GAP1	22930	ucsc.edu	37	chr2	135920123	135920123	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgcgctgcacctccttcAggtgctgcactatctggcaa	11	13	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	135920123	A	G	135920123	5	3	43	1	0	0	0	0	0	0	1	0	13027	202	7	2	2366	2	RAB3GAP1	2	135920123	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	7595878	135920123	107279250	120	3286											
LCT	3938	broad.mit.edu;bcgsc.ca	37	chr2	136547323	136547323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccactcaaaattgtccatcGcactccaaactgtgtatcct	4	15	1	0	rs183725992		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	136547323	G	A	136547323	3	1	43	1	0	0	0	0	1	0	0	0	8755	1087	38	1	410	1	LCT	2	136547323	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	627200	136547323	106652050	121	3287											
COBLL1	22837	broad.mit.edu;hgsc.bcm.edu	37	chr2	165578972	165578972	+	Frame_Shift_Del	DEL	A	A	-													tactgcgttgaaaaaaactgAaaaaccctttattttctttc					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	165578972	A	-	165578972	7	5	43	1	0	1	0	1	0	0	0	0	3683	246	9	0	2818	0	COBLL1	2	165578972	Frame_Shift_Del	DEL	A	TCGA-KN-8428-01A-11D-2310-10	29031649	165578972	77620401	122	3288	91	2									
COBLL1	22837	bcgsc.ca	37	chr2	165578973	165578973	+	Frame_Shift_Del	DEL	A	A	-													actgcgttgaaaaaaactgaAaaaccctttattttctttct					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	165578973	A	-	165578973	7	5	43	1	0	1	0	1	0	0	0	0	3683	14	1	0	2819	0	COBLL1	2	165578973	Frame_Shift_Del	DEL	A	TCGA-KN-8428-01A-11D-2310-10	1	165578973	77620400	123	3289	91	2									
XIRP2	129446	broad.mit.edu	37	chr2	168100185	168100185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaactgttcacagagaagaCgttgaaaagggagatgtaag	12	4	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	168100185	C	T	168100185	2	4	43	1	0	0	0	0	0	0	0	1	17536	535	19	1		1	XIRP2	2	168100185	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2521212	168100185	75099188	124	3290											
METTL8	79828	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	172182369	172182369	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accttttgtaaagaaatatgCtctggtaccatctcctcgaa	6	10	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	172182369	C	G	172182369	3	3	43	1	0	0	0	0	1	0	0	0	9584	797	28	5	216	5	METTL8	2	172182369	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4082184	172182369	71017004	125	3291											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	179460285	179460285	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcaacaaatggacccaTgccaatactattttcagccg	6	12	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	179460285	T	C	179460285	3	2	43	1	0	0	0	0	1	0	0	0	16841	1464	51	4	50455	4	TTN	2	179460285	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	7277916	179460285	63739088	126	3292											
TTN	7273	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	179578856	179578856	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaggtacaggtgtctccCgtggtaacttttatggattc	10	9	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	179578856	C	T	179578856	2	4	43	1	0	0	0	0	0	0	0	1	16841	639	23	1		1	TTN	2	179578856	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	118571	179578856	63620517	127	3293											
STAT1	6772	ucsc.edu;bcgsc.ca	37	chr2	191848415	191848415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaggatggaggcccaacCgctcgggagctggctgacgt	15	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	191848415	C	T	191848415	3	4	43	1	0	0	0	0	1	0	0	0	15364	652	23	1	893	1	STAT1	2	191848415	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12269559	191848415	51350958	128	3294											
HSPD1	3329	broad.mit.edu;bcgsc.ca	37	chr2	198353083	198353083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagtcaatgagtccaaggCtggaatgcatcgaaggaggg	16	6	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	198353083	C	T	198353083	3	4	43	1	0	0	0	0	1	0	0	0	7489	797	28	4	385	4	HSPD1	2	198353083	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6504668	198353083	44846290	129	3295											
NBEAL1	65065	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	204002940	204002940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacagagaagcaaaaactAatccagtaactgctgaaaac	6	8	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	204002940	A	G	204002940	3	3	43	1	0	0	0	0	1	0	0	0	10266	362	13	4	4644	4	NBEAL1	2	204002940	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5649857	204002940	39196433	130	3296											
PIKFYVE	200576	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	209214769	209214769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtagatggaggagataCacaaaagaagcaactcataa	10	5	1	4	rs147015179	bycluster;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	209214769	C	T	209214769	3	4	43	1	0	0	0	0	1	0	0	0	12004	478	17	4	5545	4	PIKFYVE	2	209214769	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5211829	209214769	33984604	131	3297											
OBSL1	23363	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	220435086	220435086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcggtacatgaggcggcggCggtccgggagcagcgggcgg	22	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	220435086	C	T	220435086	3	4	43	1	0	0	0	0	1	0	0	0	10892	768	27	1	5057	1	OBSL1	2	220435086	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11220317	220435086	22764287	132	3298											
DOCK10	55619	broad.mit.edu	37	chr2	225684245	225684245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccataaatgtaaagcagCgctaaaatagataaaattct	7	6	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	225684245	C	T	225684245	3	4	43	1	0	0	0	0	1	0	0	0	4722	782	27	1	3487	1	DOCK10	2	225684245	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5249159	225684245	17515128	133	3299											
PID1	55022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	230127481	230127481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggagaagaacatgtcctcGactcttctaacatcaggtgg	10	10	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	230127481	G	A	230127481	3	1	43	1	0	0	0	0	1	0	0	0	11962	1059	37	1	717	1	PID1	2	230127481	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4443236	230127481	13071892	134	3300											
C2orf57	165100	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	232458786	232458786	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtggagggcatccgctcagCcatgcgctacctgaccagcc	12	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	232458786	C	T	232458786	3	4	43	1	0	0	0	0	1	0	0	0	2198	739	26	3	1126	3	C2orf57	2	232458786	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2331305	232458786	10740587	135	3301											
ILKAP	80895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	239079272	239079272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcaggctgcttcgtagcGggcgtcggctgcggacttcc	16	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	239079272	G	A	239079272	3	1	43	1	0	0	0	0	1	0	0	0	7775	1116	39	1	98	1	ILKAP	2	239079272	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6620486	239079272	4120101	136	3302											
TRNT1	51095	broad.mit.edu	37	chr3	3179092	3179092	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcagtcggctgggattcgGatgataaacaacagaggaga	13	6	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	3179092	G	C	3179092	2	2	43	1	0	0	0	0	0	0	0	1	16678	1161	41	5		5	TRNT1	3	3179092	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10		3179092	194843338	137	3303											
CIDEC	63924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	9918797	9918797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccatgatgcccttcctcaCgcttcgatccgccgtgctta	8	16	1	1	rs148744468		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	9918797	C	T	9918797	3	4	43	1	0	0	0	0	1	0	0	0	3456	536	19	1	572	1	CIDEC	3	9918797	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6739705	9918797	188103633	138	3304											
SLC6A11	6538	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	10960101	10960101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgggttttatggcgtaCgagcagggggtacccattgc	15	9	0	0	rs144421280		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	10960101	C	T	10960101	2	4	43	1	0	0	0	0	0	0	0	1	14772	547	19	1		1	SLC6A11	3	10960101	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1041304	10960101	187062329	139	3305											
CAND2	23066	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	12858741	12858741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtagggacccgtcccccGtgtgtggactatgccaaact	12	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	12858741	G	A	12858741	2	1	43	1	0	0	0	0	0	0	0	1	2641	1132	40	1		1	CAND2	3	12858741	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1898640	12858741	185163689	140	3306											
C3orf20	84077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	14724594	14724594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctctcccaccatggcccGtcaggtgcgcacccaccagg	9	20	2	0	rs145497672		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	14724594	G	A	14724594	3	1	43	1	0	0	0	0	1	0	0	0	2233	1145	40	1	376	1	C3orf20	3	14724594	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1865853	14724594	183297836	141	3307											
EFHB	151651	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	19921161	19921161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatccggtctgcatgccGtagctcatctagaacatttc	8	12	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	19921161	G	A	19921161	3	1	43	1	0	0	0	0	1	0	0	0	4982	1144	40	1	41	1	EFHB	3	19921161	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5196567	19921161	178101269	142	3308											
GADL1	339896	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	30769804	30769804	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccggctcacttgagggCtgatcaccacctggcggaag	12	15	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30769804	C	T	30769804	3	4	43	1	0	0	0	0	1	0	0	0	6237	797	28	4	73	4	GADL1	3	30769804	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	10848643	30769804	167252626	143	3309											
STT3B	201595	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	31617961	31617961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaattggtttgatgaaagaGcatggtatccactaggaaga	11	4	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	31617961	G	A	31617961	3	1	43	1	0	0	0	0	1	0	0	0	15434	971	34	4	394	4	STT3B	3	31617961	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	848157	31617961	166404469	144	3310											
DCLK3	85443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	36759593	36759593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggtccctctcagggctgCggaatgggggaaagccacac	14	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	36759593	C	T	36759593	3	4	43	1	0	0	0	0	1	0	0	0	4325	768	27	1	293	1	DCLK3	3	36759593	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5141632	36759593	161262837	145	3311											
SLC22A13	9390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	38316965	38316965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caataggcggaaactctcccCggagctcatgaaccaggtac	10	13	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38316965	C	T	38316965	3	4	43	1	0	0	0	0	1	0	0	0	14542	652	23	1	929	1	SLC22A13	3	38316965	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1557372	38316965	159705465	146	3312											
ZNF621	285268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	40573994	40573994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagtgtggaaaggctttcCgtaggagtgcggcatacctg	15	7	0	1	rs144763141		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	40573994	C	T	40573994	3	4	43	1	0	0	0	0	1	0	0	0	18150	652	23	1	747	1	ZNF621	3	40573994	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2257029	40573994	157448436	147	3313											
CTNNB1	1499	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	41266964	41266964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgatgtagaaacagctcGttgtaccgctgggaccttgc	11	9	0	2	rs200890083		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	41266964	G	A	41266964	3	1	43	1	0	0	0	0	1	0	0	0	4047	1145	40	1	649	1	CTNNB1	3	41266964	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	692970	41266964	156755466	148	3314											
ZNF197	10168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	44684294	44684294	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttatcttattgaccatcagCgactccacagtgcagagaac	7	12	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	44684294	C	T	44684294	4	4	43	1	0	0	0	0	0	1	0	0	17864	760	27	1	1690	1	ZNF197	3	44684294	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3417330	44684294	153338136	149	3315											
PLXNB1	5364	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	48462160	48462160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccagttacacccccagcGgctgctcacacaggcctggc	9	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48462160	G	A	48462160	3	1	43	1	0	0	0	0	1	0	0	0	12203	1116	39	1	4581	1	PLXNB1	3	48462160	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3777866	48462160	149560270	150	3316											
COL7A1	1294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	48626075	48626075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcgcatgctctgcctacGcgtagtgacaacaatggaga	11	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48626075	G	A	48626075	3	1	43	1	0	0	0	0	1	0	0	0	3733	1101	38	1	6647	1	COL7A1	3	48626075	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	163915	48626075	149396355	151	3317											
NDUFAF3	25915	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr3	49059935	49059935	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaaccgcgtgctcggcccCtgcgctctgctcccgcactc	11	19	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49059935	C	A	49059935	2	1	43	1	0	0	0	0	0	0	0	1	10355	668	24	5		5	NDUFAF3	3	49059935	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	433860	49059935	148962495	152	3318											
IMPDH2	3615	broad.mit.edu	37	chr3	49061970	49061970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttccacctgggctgaggacGttctcttctcaaacttaagc	8	13	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49061970	G	A	49061970	3	1	43	1	0	0	0	0	1	0	0	0	7788	1145	40	1	71	1	IMPDH2	3	49061970	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2035	49061970	148960460	153	3319											
BSN	8927	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	49694040	49694040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagtggggccctcagcCggccagggttcgagaaagag	18	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49694040	C	T	49694040	3	4	43	1	0	0	0	0	1	0	0	0	1538	643	23	1	7069	1	BSN	3	49694040	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	632070	49694040	148328390	154	3320											
MST1	4485	hgsc.bcm.edu;mdanderson.org	37	chr3	49723817	49723817	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccaacgctggcaaggtacGcccgcagtggtggtattggc	14	12	0	0	rs146923247	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49723817	G	A	49723817	2	1	43	1	0	0	0	0	0	0	0	1	9968	1074	38	1		1	MST1	3	49723817	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	29777	49723817	148298613	155	3321											
MST1R	4486	broad.mit.edu;mdanderson.org	37	chr3	49940431	49940431	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctggcagccacggctgcGtccagtgaggatgccacgta	14	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49940431	G	A	49940431	2	1	43	1	0	0	0	0	0	0	0	1	9969	1136	40	1		1	MST1R	3	49940431	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	216614	49940431	148081999	156	3322											
RBM6	10180	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	50005642	50005642	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatttcagaggtagacacCgatctaggactgatcaggat	11	8	3	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	50005642	C	T	50005642	4	4	43	1	0	0	0	0	0	1	0	0	13236	644	23	1	790	1	RBM6	3	50005642	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	65211	50005642	148016788	157	3323											
IFRD2	7866	mdanderson.org	37	chr3	50329826	50329826	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgacgggagccacacgccAcgcgcgccaccatcttcgcg	12	18	1	0	rs1076872	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	50329826	A	G	50329826	2	3	43	1	0	0	0	0	0	0	0	1	7615	146	6	2		2	IFRD2	3	50329826	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	324184	50329826	147692604	158	3324											
DOCK3	1795	hgsc.bcm.edu;mdanderson.org	37	chr3	51315164	51315164	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaagagggcagcggtgcccGcagtgcacagccgagatcac	15	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	51315164	G	A	51315164	2	1	43	1	0	0	0	0	0	0	0	1	4725	1074	38	1		1	DOCK3	3	51315164	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	985338	51315164	146707266	159	3325											
DNAH1	25981	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	52420183	52420183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccatccccaggtggataCggccatcgccgaggagaccc	11	17	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	52420183	C	T	52420183	3	4	43	1	0	0	0	0	1	0	0	0	4634	536	19	1	8847	1	DNAH1	3	52420183	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1105019	52420183	145602247	160	3326											
STAB1	23166	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	52552013	52552013	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcacctgccgtgcccgagtCggcctggtaatgatgcccaa	11	15	1	1	rs185967985	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	52552013	C	T	52552013	2	4	43	1	0	0	0	0	0	0	0	1	15337	871	31	1		1	STAB1	3	52552013	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	131830	52552013	145470417	161	3327											
CACNA1D	776	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	53757945	53757945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgggatgcagctgtttggCggcaagtttaattttgatga	13	5	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	53757945	C	T	53757945	2	4	43	1	0	0	0	0	0	0	0	1	2566	755	27	1		1	CACNA1D	3	53757945	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1205932	53757945	144264485	162	3328											
SLMAP	7871	broad.mit.edu	37	chr3	57843846	57843846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagatagactcttatcacGgttagaagttatgggaaacc	10	6	2	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	57843846	G	A	57843846	3	1	43	1	0	0	0	0	1	0	0	0	14847	1116	39	1	673	1	SLMAP	3	57843846	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4085901	57843846	140178584	163	3329											
ATXN7	6314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	63981293	63981293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctatctggcagcagccaccGtctctacatccccagtcctg	8	17	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	63981293	G	A	63981293	3	1	43	1	0	0	0	0	1	0	0	0	1219	1145	40	1	1901	1	ATXN7	3	63981293	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6137447	63981293	134041137	164	3330											
LMOD3	56203	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	69168210	69168210	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgggtcctcccaacagCtcccacatcccagggggcag	12	16	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	69168210	C	A	69168210	3	1	43	1	0	0	0	0	1	0	0	0	8922	796	28	5	394	5	LMOD3	3	69168210	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5186917	69168210	128854220	165	3331											
GPR27	2850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	71804265	71804265	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagggcccagttcccctgCtgccagagcccccggaccac	10	19	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	71804265	C	T	71804265	2	4	43	1	0	0	0	0	0	0	0	1	6742	805	28	4		4	GPR27	3	71804265	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2636055	71804265	126218165	166	3332											
PPP4R2	151987	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	73096446	73096446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcctcccaaccctaatgtcGaatatattccctttgatgaa	5	12	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	73096446	G	A	73096446	3	1	43	1	0	0	0	0	1	0	0	0	12489	1059	37	1	236	1	PPP4R2	3	73096446	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1292181	73096446	124925984	167	3333											
ROBO1	6091	hgsc.bcm.edu;ucsc.edu	37	chr3	78666912	78666912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactaacactggagcgtccGctggaaatgttgtcctcctc	10	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	78666912	G	A	78666912	2	1	43	1	0	0	0	0	0	0	0	1	13608	1078	38	1		1	ROBO1	3	78666912	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5570466	78666912	119355518	168	3334											
HTR1F	3355	broad.mit.edu;bcgsc.ca	37	chr3	88040986	88040986	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcattccaaaagcttgtgCgatgtcgatgttagttttaa	9	6	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	88040986	C	T	88040986	4	4	43	1	0	0	0	0	0	1	0	0	7501	760	27	1	1089	1	HTR1F	3	88040986	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9374074	88040986	109981444	169	3335											
CGGBP1	8545	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	88105046	88105046	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agctcacctccaaactcagtGactcgatccaggggagtcac	9	14	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	88105046	G	A	88105046	2	1	43	1	0	0	0	0	0	0	0	1	3331	1277	45	4		4	CGGBP1	3	88105046	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	64060	88105046	109917384	170	3336											
EPHA3	2042	broad.mit.edu;bcgsc.ca	37	chr3	89498501	89498501	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttatggagagagaccaTactgggagatgtccaatcag	12	7	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	89498501	T	C	89498501	3	2	43	1	0	0	0	0	1	0	0	0	5207	1406	49	4	2553	4	EPHA3	3	89498501	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1393455	89498501	108523929	171	3337											
CRYBG3	131544	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	97607247	97607247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttctggaggaagaccatgGgctctttgagatttctacag	12	7	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	97607247	G	A	97607247	3	1	43	1	0	0	0	0	1	0	0	0	3942	1232	43	3	1530	3	CRYBG3	3	97607247	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8108746	97607247	100415183	172	3338											
PARP14	54625	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	122420029	122420029	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagctgccctaccaccaCgtgatccatgcagtggggcc	12	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	122420029	C	T	122420029	2	4	43	1	0	0	0	0	0	0	0	1	11537	535	19	1		1	PARP14	3	122420029	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24812782	122420029	75602401	173	3339											
CCDC14	64770	broad.mit.edu	37	chr3	123675252	123675252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagaatctgcattaaaacGtggtatttttcttaaatagg	8	6	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	123675252	G	A	123675252	3	1	43	1	0	0	0	0	1	0	0	0	2798	1145	40	1	2525	1	CCDC14	3	123675252	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1255223	123675252	74347178	174	3340											
ROPN1	54763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	123689003	123689003	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgaacgggatccggggcGacccaccattatggtcacat	12	12	1	1	rs140868038		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	123689003	G	A	123689003	3	1	43	1	0	0	0	0	1	0	0	0	13618	1059	37	1	188	1	ROPN1	3	123689003	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13751	123689003	74333427	175	3341											
KALRN	8997	broad.mit.edu;bcgsc.ca	37	chr3	123946899	123946899	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctatcctaaaggaaaaggtgGccttcgtgtctggtgagtat	12	7	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	123946899	G	T	123946899	3	4	43	1	0	0	0	0	1	0	0	0	8036	1203	42	5	136	5	KALRN	3	123946899	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	257896	123946899	74075531	176	3342											
ITGB5	3693	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	124515406	124515406	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcacaggttctggtacaCgctctggttctccccatcct	9	16	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	124515406	C	T	124515406	3	4	43	1	0	0	0	0	1	0	0	0	7959	536	19	1	901	1	ITGB5	3	124515406	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	568507	124515406	73507024	177	3343											
PLXNA1	5361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	126723819	126723819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagctgactgtgcagcccCgcaatgtgtctgtcaccatg	11	13	2	1	rs117043507	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	126723819	C	T	126723819	3	4	43	1	0	0	0	0	1	0	0	0	12199	652	23	1	1729	1	PLXNA1	3	126723819	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2208413	126723819	71298611	178	3344											
MCM2	4171	broad.mit.edu;bcgsc.ca	37	chr3	127339608	127339608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcatggcggaggcccacgCgcgcatccatctgcgggact	14	16	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	127339608	C	T	127339608	3	4	43	1	0	0	0	0	1	0	0	0	9463	768	27	1	2387	1	MCM2	3	127339608	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	615789	127339608	70682822	179	3345											
IFT122	55764	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	129233374	129233374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtaccctgaccatccgcGccaagcccttccacgacagt	9	17	0	1	rs149245630		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	129233374	G	A	129233374	3	1	43	1	0	0	0	0	1	0	0	0	7616	1087	38	1	3388	1	IFT122	3	129233374	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1893766	129233374	68789056	180	3346											
DNAJC13	23317	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	132172979	132172979	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatttataaaagggcaagtaCggaaatattcttcaacagag	8	5	2	1	rs147315244		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	132172979	C	T	132172979	3	4	43	1	0	0	0	0	1	0	0	0	4669	527	19	1	940	1	DNAJC13	3	132172979	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2939605	132172979	65849451	181	3347											
DNAJC13	23317	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	132221145	132221145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctcagagtattccccgcGtagctgctcttggggtagaa	11	11	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	132221145	G	A	132221145	3	1	43	1	0	0	0	0	1	0	0	0	4669	1145	40	1	4703	1	DNAJC13	3	132221145	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	48166	132221145	65801285	182	3348											
RAB6B	51560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	133553468	133553468	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccattccgggtagagccgaCgccacacgtcgaaaaagctg	11	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	133553468	C	T	133553468	2	4	43	1	0	0	0	0	0	0	0	1	13044	523	19	1		1	RAB6B	3	133553468	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1332323	133553468	64468962	183	3349											
ATR	545	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	142272665	142272665	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaaaaacaaaaattatcaAcctcctttataaatccatct	1	9	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	142272665	A	G	142272665	5	3	43	1	0	0	0	0	0	0	1	0	1208	57	2	2	5548	2	ATR	3	142272665	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8719197	142272665	55749765	184	3350											
C3orf58	205428	broad.mit.edu	37	chr3	143691481	143691481	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acggcgagccccgcgagggcGgccgccgccgagtggtgctc	18	16	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	143691481	G	C	143691481	3	2	43	1	0	0	0	0	1	0	0	0	2256	1116	39	5	309	5	C3orf58	3	143691481	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1418816	143691481	54330949	185	3351											
TM4SF1	4071	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	149093475	149093475	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggacctaccgcacatcGtttgccacagttttcatggc	10	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	149093475	G	A	149093475	4	1	43	1	0	0	0	0	0	1	0	0	16070	1153	40	1	365	1	TM4SF1	3	149093475	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5401994	149093475	48928955	186	3352											
WDR49	151790	broad.mit.edu	37	chr3	167272531	167272531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatttgtgaaatatccacaGctccatcttgcccaacattt	6	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	167272531	G	T	167272531	3	4	43	1	0	0	0	0	1	0	0	0	17408	971	34	5	1426	5	WDR49	3	167272531	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18179056	167272531	30749899	187	3353											
DCUN1D1	54165	broad.mit.edu	37	chr3	182681755	182681755	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccacgcaataatcaacacActaatgctggctggatcgag	8	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	182681755	A	G	182681755	2	3	43	1	0	0	0	0	0	0	0	1	4345	156	6	2		2	DCUN1D1	3	182681755	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	15409224	182681755	15340675	188	3354											
EIF4G1	1981	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr3	184038753	184038753	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaagctaatggggagacGccccaggttgctgtcattgt	12	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	184038753	G	A	184038753	2	1	43	1	0	0	0	0	0	0	0	1	5075	1074	38	1		1	EIF4G1	3	184038753	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1356998	184038753	13983677	189	3355											
CLCN2	1181	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	184073265	184073265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctccaccaggccctggCggacccacgtccgattgtca	10	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	184073265	C	T	184073265	3	4	43	1	0	0	0	0	1	0	0	0	3492	768	27	1	1525	1	CLCN2	3	184073265	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	34512	184073265	13949165	190	3356											
DGKG	1608	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	185993360	185993360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcacaggccttgcttgcGgacgcccatgagcatgatat	12	12	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	185993360	G	A	185993360	3	1	43	1	0	0	0	0	1	0	0	0	4506	1116	39	1	1553	1	DGKG	3	185993360	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1920095	185993360	12029070	191	3357											
TP63	8626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	189526150	189526150	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccctataacacagaccaCgcgcagaacagcgtcacggc	9	15	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	189526150	C	T	189526150	2	4	43	1	0	0	0	0	0	0	0	1	16497	535	19	1		1	TP63	3	189526150	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3532790	189526150	8496280	192	3358											
ATP13A3	79572	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	194149621	194149621	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagatcaatgaagagaaacTggaagtctcctaggttactt	9	8	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	194149621	T	C	194149621	3	2	43	1	0	0	0	0	1	0	0	0	1129	1580	55	2	804	2	ATP13A3	3	194149621	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	4623471	194149621	3872809	193	3359											
DLG1	1739	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	196792176	196792176	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttctcgtacagactgaaCacttgttccatatagatgat	6	9	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	196792176	C	T	196792176	3	4	43	1	0	0	0	0	1	0	0	0	4591	478	17	4	353	4	DLG1	3	196792176	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2642555	196792176	1230254	194	3360											
SLC26A1	10861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	983647	983647	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactgcgggcgaacatctcCgccagcgagatggagaaggc	15	11	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	983647	C	T	983647	2	4	43	1	0	0	0	0	0	0	0	1	14612	639	23	1		1	SLC26A1	4	983647	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10		983647	190170629	195	3361											
FGFRL1	53834	ucsc.edu	37	chr4	1017489	1017489	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctgggggtcaagaggAccccgccagccagcagtggg	15	14	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	1017489	A	C	1017489	3	2	43	1	0	0	0	0	1	0	0	0	5918	275	10	5	423	5	FGFRL1	4	1017489	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	33842	1017489	190136787	196	3362											
TACC3	10460	broad.mit.edu	37	chr4	1746487	1746487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaaggcccaggcggaagcGttggccctccaggccagcct	14	15	0	0	rs148572882		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1746487	G	A	1746487	2	1	43	1	0	0	0	0	0	0	0	1	15604	1132	40	1		1	TACC3	4	1746487	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	728998	1746487	189407789	197	3363											
NOP14	8602	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	2950032	2950032	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgctttgtttccttctgcGagactcgggtggttgcactt	11	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	2950032	G	A	2950032	2	1	43	1	0	0	0	0	0	0	0	1	10615	1045	37	1		1	NOP14	4	2950032	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1203545	2950032	188204244	198	3364											
HTT	3064	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	3107131	3107131	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctgtggaggtttgctgaGctggctcacctggttcggcc	15	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	3107131	G	A	3107131	2	1	43	1	0	0	0	0	0	0	0	1	7518	962	34	4		4	HTT	4	3107131	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	157099	3107131	188047145	199	3365											
HGFAC	3083	hgsc.bcm.edu;mdanderson.org	37	chr4	3446155	3446155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccggacctggtgcgaagGcacccgacatacaggtgcgc	16	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	3446155	G	A	3446155	3	1	43	1	0	0	0	0	1	0	0	0	7144	1203	42	3	738	3	HGFAC	4	3446155	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	339024	3446155	187708121	200	3366											
ZBTB49	166793	ucsc.edu;mdanderson.org	37	chr4	4322722	4322722	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtaagttacggtccatgatCcaacctcatggagttagtga	10	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	4322722	C	T	4322722	2	4	43	1	0	0	0	0	0	0	0	1	17655	845	30	3		3	ZBTB49	4	4322722	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	876567	4322722	186831554	201	3367											
SORCS2	57537	broad.mit.edu	37	chr4	7725501	7725501	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgtgaaccttacactgacCggggagcccatccggcaccg	11	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7725501	C	T	7725501	2	4	43	1	0	0	0	0	0	0	0	1	15029	639	23	1		1	SORCS2	4	7725501	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3402779	7725501	183428775	202	3368											
CPZ	8532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	8607769	8607769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggcaacgaggtggcgggcCgggagatgctcatctaccta	15	10	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8607769	C	T	8607769	3	4	43	1	0	0	0	0	1	0	0	0	3868	643	23	1	781	1	CPZ	4	8607769	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	882268	8607769	182546507	203	3369											
HS3ST1	9957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	11401504	11401504	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttggggccacgccatcGcggacgtcatcctggagggt	15	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	11401504	G	A	11401504	2	1	43	1	0	0	0	0	0	0	0	1	7421	1074	38	1		1	HS3ST1	4	11401504	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2793735	11401504	179752772	204	3370											
SLIT2	9353	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	20533609	20533609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttcttttttcttcaggcGtctcaataataatgaattta	4	8	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	20533609	G	A	20533609	3	1	43	1	0	0	0	0	1	0	0	0	14838	1145	40	1	1682	1	SLIT2	4	20533609	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9132105	20533609	170620667	205	3371											
CCKAR	886	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	26483646	26483646	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccatcaggttggctgcggAgctgttactccggatgcggt	16	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	26483646	A	C	26483646	3	2	43	1	0	0	0	0	1	0	0	0	2907	304	11	5	389	5	CCKAR	4	26483646	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5950037	26483646	164670630	206	3372											
PTTG2	10744	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	37962188	37962188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatctcaagttttaacacgaCgttttggcaaaacatacgat	6	8	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	37962188	C	T	37962188	3	4	43	1	0	0	0	0	1	0	0	0	12913	536	19	1	135	1	PTTG2	4	37962188	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11478542	37962188	153192088	207	3373											
KIAA1211	57482	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	57182448	57182448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaaccttccagcagccGctctgttcctgtggcccacc	9	18	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	57182448	G	A	57182448	3	1	43	1	0	0	0	0	1	0	0	0	8276	1087	38	1	2798	1	KIAA1211	4	57182448	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	19220260	57182448	133971828	208	3374											
KIAA1211	57482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	57189672	57189672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcgggagcagcaggcgaCgcgggaggagagaaagcaag	19	7	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	57189672	C	T	57189672	3	4	43	1	0	0	0	0	1	0	0	0	8276	536	19	1	3339	1	KIAA1211	4	57189672	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7224	57189672	133964604	209	3375											
PPAT	5471	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	57267640	57267640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctccaggcaagacttcacGgtaatatcttgggaaacaat	8	9	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	57267640	G	A	57267640	3	1	43	1	0	0	0	0	1	0	0	0	12382	1116	39	1	831	1	PPAT	4	57267640	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	77968	57267640	133886636	210	3376											
SRP72	6731	mdanderson.org;bcgsc.ca	37	chr4	57344581	57344581	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acccacaggcagaactggccAtcattcatggtcagatggct	10	12	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	57344581	A	G	57344581	3	3	43	1	0	0	0	0	1	0	0	0	15257	217	8	4	705	4	SRP72	4	57344581	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	76941	57344581	133809695	211	3377											
SHROOM3	57619	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	77691990	77691990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctctccctctcggggcGtctagcccgtgttgagaatg	13	13	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	77691990	G	A	77691990	3	1	43	1	0	0	0	0	1	0	0	0	14393	1145	40	1	5599	1	SHROOM3	4	77691990	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	20347409	77691990	113462286	212	3378											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	79236854	79236854	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgtctgaatgccctggCgggtactatgctgatgccac	12	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	79236854	C	T	79236854	2	4	43	1	0	0	0	0	0	0	0	1	6093	755	27	1		1	FRAS1	4	79236854	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1544864	79236854	111917422	213	3379											
RASGEF1B	153020	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	82366931	82366931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagcaaccaagtagctgaggCgattaaaccattccacgtaa	8	10	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	82366931	C	T	82366931	3	4	43	1	0	0	0	0	1	0	0	0	13162	768	27	1	662	1	RASGEF1B	4	82366931	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3130077	82366931	108787345	214	3380											
SCD5	79966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	83557759	83557759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccaatggcacccagagCgacgagtgggttctgccgag	13	13	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	83557759	C	T	83557759	3	4	43	1	0	0	0	0	1	0	0	0	13983	768	27	1	213	1	SCD5	4	83557759	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1190828	83557759	107596517	215	3381											
WDFY3	23001	broad.mit.edu	37	chr4	85758218	85758218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagggtggaaggcactgacAttgttgtcatgcagtccacg	13	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	85758218	A	G	85758218	3	3	43	1	0	0	0	0	1	0	0	0	17376	217	8	4	10431	4	WDFY3	4	85758218	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2200459	85758218	105396058	216	3382											
PTPN13	5783	bcgsc.ca	37	chr4	87728796	87728796	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taccagttgggaaagaagagTtcgtttacattgcctgccaa	10	8	0	2	rs199502086	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	87728796	T	C	87728796	3	2	43	1	0	0	0	0	1	0	0	0	12872	1725	60	2	7018	2	PTPN13	4	87728796	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1970578	87728796	103425480	217	3383											
ADH1C	126	broad.mit.edu	37	chr4	100268909	100268909	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtatttcaccttaatgCgaacttcatgagccttagga	7	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	100268909	C	T	100268909	1	4	43	0	1	0	0	0	0	0	0	0	309	768	27	1		1	ADH1C	4	100268909	RNA	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12540113	100268909	90885367	218	3384											
EMCN	51705	ucsc.edu;mdanderson.org	37	chr4	101386644	101386644	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaacacttgttactgttacGtttgaaatgatggagtcatt	9	5	1	2	rs115243972	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	101386644	G	A	101386644	2	1	43	1	0	0	0	0	0	0	0	1	5125	1136	40	1		1	EMCN	4	101386644	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1117735	101386644	89767632	219	3385											
SYNPO2	171024	hgsc.bcm.edu;ucsc.edu	37	chr4	119951253	119951253	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcatttcttggtgcaagCgaatcagaggtggatgaaga	14	5	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	119951253	C	T	119951253	2	4	43	1	0	0	0	0	0	0	0	1	15558	767	27	1		1	SYNPO2	4	119951253	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	18564609	119951253	71203023	220	3386											
FAT4	79633	broad.mit.edu	37	chr4	126389786	126389786	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatttgccacgattaaaAgtcatgccttattgctttac	5	9	2	0	rs183593425		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	126389786	A	G	126389786	3	3	43	1	0	0	0	0	1	0	0	0	5741	72	3	2	12061	2	FAT4	4	126389786	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	6438533	126389786	64764490	221	3387											
UCP1	7350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	141481158	141481158	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtcgcaagaaggaaggTaccaacctagaaaagtgcat	10	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	141481158	T	C	141481158	2	2	43	1	0	0	0	0	0	0	0	1	17036	1625	57	2		2	UCP1	4	141481158	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	15091372	141481158	49673118	222	3388											
DCHS2	54798	broad.mit.edu	37	chr4	155163876	155163876	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acctgtaccttgattacagtCgtattagaaagcctgggcat	9	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	155163876	C	T	155163876	2	4	43	1	0	0	0	0	0	0	0	1	4320	871	31	1		1	DCHS2	4	155163876	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	13682718	155163876	35990400	223	3389											
DCHS2	54798	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	155254036	155254036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgggggccaagtgggtgCgcctgtgtttgcagcatttg	17	9	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	155254036	C	T	155254036	2	4	43	1	0	0	0	0	0	0	0	1	4320	755	27	1		1	DCHS2	4	155254036	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	90160	155254036	35900240	224	3390											
DCHS2	54798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr4	155254288	155254288	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtcgatggcaaagacGcctggctgcgggctggcgat	16	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	155254288	G	A	155254288	2	1	43	1	0	0	0	0	0	0	0	1	4320	1074	38	1		1	DCHS2	4	155254288	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	252	155254288	35899988	225	3391											
FGB	2244	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	155487066	155487066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaggtggctatcgggctcGtccagccaaagcagctgcca	14	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	155487066	G	A	155487066	3	1	43	1	0	0	0	0	1	0	0	0	5880	1145	40	1	227	1	FGB	4	155487066	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	232778	155487066	35667210	226	3392											
FGB	2244	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	155487081	155487081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcgtccagccaaagcagCtgccactcaaaagaaagtag	10	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	155487081	C	T	155487081	3	4	43	1	0	0	0	0	1	0	0	0	5880	797	28	4	242	4	FGB	4	155487081	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	15	155487081	35667195	227	3393											
FAM198B	51313	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	159076877	159076877	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatttctgtttcagcaaCtgctgataagttccccaggt	8	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	159076877	C	T	159076877	2	4	43	1	0	0	0	0	0	0	0	1	5574	564	20	4		4	FAM198B	4	159076877	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3589796	159076877	32077399	228	3394											
GALNT7	51809	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	174169387	174169387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccatgatcctgtgcttcGcccagggatcctcggtaact	9	14	0	1	rs201773910		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	174169387	G	A	174169387	3	1	43	1	0	0	0	0	1	0	0	0	6272	1087	38	1	389	1	GALNT7	4	174169387	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15092510	174169387	16984889	229	3395											
HMGB2	3148	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	174254650	174254650	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgtccctctcctgcctcaCcttccatctctccgaacact	3	21	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	174254650	C	T	174254650	5	4	43	1	0	0	0	0	0	0	1	0	7284	521	18	3	494	3	HMGB2	4	174254650	Splice_Site	SNP	C	TCGA-KN-8428-01A-11D-2310-10	85263	174254650	16899626	230	3396											
SNX25	83891	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	186185677	186185677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatttctacaaacgtgttctCgggttctggtgttttgtctc	10	8	4	0	rs140041413	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	186185677	C	T	186185677	3	4	43	1	0	0	0	0	1	0	0	0	14994	875	31	1	335	1	SNX25	4	186185677	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11931027	186185677	4968599	231	3397											
F11	2160	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	187209727	187209727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgtttacaccaacgtggtcGagtacgtggactggattctg	13	8	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	187209727	G	A	187209727	3	1	43	1	0	0	0	0	1	0	0	0	5377	1059	37	1	1891	1	F11	4	187209727	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1024050	187209727	3944549	232	3398											
FAT1	2195	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	187629557	187629557	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtagtaccaatgggcacGttctcatcaaaagcagcttt	8	10	2	0	rs202036099		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	187629557	G	A	187629557	2	1	43	1	0	0	0	0	0	0	0	1	5738	1136	40	1		1	FAT1	4	187629557	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	419830	187629557	3524719	233	3399											
FRG1	2483	mdanderson.org	37	chr4	190876227	190876227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctatggaaaatatcttgGtataaattcagatggacttg	10	4	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	190876227	G	A	190876227	3	1	43	1	0	0	0	0	1	0	0	0	6098	1261	44	3	371	3	FRG1	4	190876227	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3246670	190876227	278049	234	3400											
C5orf55	116349	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	442635	442635	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cattcattctccaagacctgCgctgctgggcctctgagggg	12	13	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	442635	C	T	442635	2	4	43	1	0	0	0	0	0	0	0	1	2332	755	27	1		1	C5orf55	5	442635	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10		442635	180472625	235	3401											
TERT	7015	broad.mit.edu	37	chr5	1293799	1293799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaccccgtaggggcactgcGcgtggttcccaagcagctcc	13	16	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1293799	G	A	1293799	3	1	43	1	0	0	0	0	1	0	0	0	15868	1087	38	1	2256	1	TERT	5	1293799	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	851164	1293799	179621461	236	3402											
ADAMTS16	170690	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	5239898	5239898	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcaatgccctcagaaggTactacctgaatgggcactgg	12	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	5239898	T	C	5239898	3	2	43	1	0	0	0	0	1	0	0	0	261	1638	57	2	2445	2	ADAMTS16	5	5239898	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3946099	5239898	175675362	237	3403											
RAI14	26064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	34821933	34821933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcccttaccttacacaataAggagttacaagataaattac	4	9	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	34821933	A	G	34821933	3	3	43	1	0	0	0	0	1	0	0	0	13100	72	3	2	1206	2	RAI14	5	34821933	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	29582035	34821933	146093327	238	3404											
NIPBL	25836	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	37000622	37000622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgttatcgaaaccgaagtcCgtcagattctgacatggaag	10	9	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	37000622	C	T	37000622	3	4	43	1	0	0	0	0	1	0	0	0	10507	652	23	1	3494	1	NIPBL	5	37000622	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2178689	37000622	143914638	239	3405											
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	37036493	37036493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atatatagttgttgaagtccGaagaggattcctcatataaa	8	5	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	37036493	G	A	37036493	3	1	43	1	0	0	0	0	1	0	0	0	10507	1059	37	1	6001	1	NIPBL	5	37036493	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	35871	37036493	143878767	240	3406											
LIFR	3977	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	38510729	38510729	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaatcagtgctgataacacTttttcttgactcacacaaca	4	12	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	38510729	T	C	38510729	2	2	43	1	0	0	0	0	0	0	0	1	8843	1606	56	2		2	LIFR	5	38510729	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1474236	38510729	142404531	241	3407											
DAB2	1601	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	39377146	39377146	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgttgttgaccaagcattGggtgccacagatgcagaagg	13	8	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	39377146	G	T	39377146	2	4	43	1	0	0	0	0	0	0	0	1	4250	1335	47	5		5	DAB2	5	39377146	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	866417	39377146	141538114	242	3408											
PTGER4	5734	hgsc.bcm.edu;mdanderson.org	37	chr5	40681716	40681716	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcaacgtgcttgtgtgCggcgcgctgctccgcatgca	13	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	40681716	C	T	40681716	2	4	43	1	0	0	0	0	0	0	0	1	12835	776	27	1		1	PTGER4	5	40681716	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1304570	40681716	140233544	243	3409											
NNT	23530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	43613077	43613077	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaatgagaagcgagtggcAttgtctcctgctggtgttca	12	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	43613077	A	G	43613077	2	3	43	1	0	0	0	0	0	0	0	1	10589	204	8	4		4	NNT	5	43613077	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2931361	43613077	137302183	244	3410											
MRPS30	10884	mdanderson.org	37	chr5	44811198	44811198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtcgaattgatgacttgcGataccagatagatgataaac	10	6	0	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44811198	G	A	44811198	3	1	43	1	0	0	0	0	1	0	0	0	9918	1058	37	1	695	1	MRPS30	5	44811198	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1198121	44811198	136104062	245	3411											
MRPS30	10884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	44812095	44812095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaaacttccattattcaaaCggcagtatgaaaaccacata	4	10	1	1	rs61753790		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	44812095	C	T	44812095	3	4	43	1	0	0	0	0	1	0	0	0	9918	527	19	1	836	1	MRPS30	5	44812095	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	897	44812095	136103165	246	3412											
ACTBL2	345651	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	56777945	56777945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggtggtgaagttatagcctCgctctgtcaggatcttcatg	12	8	4	1	rs149395843	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	56777945	C	T	56777945	3	4	43	1	0	0	0	0	1	0	0	0	194	884	31	1	544	1	ACTBL2	5	56777945	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11965850	56777945	124137315	247	3413											
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	67522808	67522808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgttgcaccaggttcttCgaaaactgaagcagatgttg	10	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	67522808	C	T	67522808	3	4	43	1	0	0	0	0	1	0	0	0	11998	893	31	1	307	1	PIK3R1	5	67522808	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	10744863	67522808	113392452	248	3414											
PDE8B	8622	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	76645327	76645327	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgctgatctgcccaaaagCgataagaaccgggcagacct	10	13	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	76645327	C	T	76645327	2	4	43	1	0	0	0	0	0	0	0	1	11733	767	27	1		1	PDE8B	5	76645327	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9122519	76645327	104269933	249	3415											
THBS4	7060	broad.mit.edu	37	chr5	79366537	79366537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcattggcgacgcttgtgaCgaggatgctgacggagatgg	18	7	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	79366537	C	T	79366537	2	4	43	1	0	0	0	0	0	0	0	1	15960	535	19	1		1	THBS4	5	79366537	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2721210	79366537	101548723	250	3416											
ACOT12	134526	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	80640001	80640001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctaggcgaattcgcttgcGtgcaatagctccccgatagc	11	13	0	0	rs149103852		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	80640001	G	A	80640001	3	1	43	1	0	0	0	0	1	0	0	0	150	1145	40	1	737	1	ACOT12	5	80640001	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1273464	80640001	100275259	251	3417											
XRCC4	7518	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	82499423	82499423	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagactgatctttataagCggtttattctggtgttgaat	11	4	2	3	rs140143447		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	82499423	C	T	82499423	3	4	43	1	0	0	0	0	1	0	0	0	17561	759	27	1	549	1	XRCC4	5	82499423	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1859422	82499423	98415837	252	3418											
TMEM161B	153396	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	87494939	87494939	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggattattaaccagagtcGcagagtatcgaatgtggctt	11	7	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	87494939	G	A	87494939	4	1	43	1	0	0	0	0	0	1	0	0	16181	1095	38	1	532	1	TMEM161B	5	87494939	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4995516	87494939	93420321	253	3419											
ANKRD32	84250	broad.mit.edu	37	chr5	94005883	94005883	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttcaatgaaagcttttgTcatcaaatttcagaaaatat	4	6	4	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	94005883	T	C	94005883	2	2	43	1	0	0	0	0	0	0	0	1	660	1673	58	2		2	ANKRD32	5	94005883	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	6510944	94005883	86909377	254	3420											
NUDT12	83594	mdanderson.org	37	chr5	102895830	102895830	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccattttcagaagtttcAttgagaagagatggagaatg	11	5	2	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	102895830	A	G	102895830	2	3	43	1	0	0	0	0	0	0	0	1	10807	214	8	4		4	NUDT12	5	102895830	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8889947	102895830	78019430	255	3421											
PJA2	9867	ucsc.edu;mdanderson.org	37	chr5	108714549	108714549	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaactggtggtgaaagaccAgtgtatgcctctgcctctct	12	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	108714549	A	G	108714549	2	3	43	1	0	0	0	0	0	0	0	1	12042	175	7	2		2	PJA2	5	108714549	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5818719	108714549	72200711	256	3422											
YTHDC2	64848	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	112902857	112902857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actctgagaattgggctgtcGttaaagctgcattggtggca	13	7	1	1	rs149048625		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	112902857	G	A	112902857	3	1	43	1	0	0	0	0	1	0	0	0	17603	1145	40	1	2997	1	YTHDC2	5	112902857	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4188308	112902857	68012403	257	3423											
CCDC112	153733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	114607065	114607065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taattttaacttaaactggcGctggcgttctttctgatgtt	8	7	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	114607065	G	A	114607065	3	1	43	1	0	0	0	0	1	0	0	0	2774	1087	38	1	428	1	CCDC112	5	114607065	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1704208	114607065	66308195	258	3424											
DMXL1	1657	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	118500256	118500256	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtagcagaagaagaacTgctgaacatgttgccagcca	10	10	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	118500256	T	C	118500256	3	2	43	1	0	0	0	0	1	0	0	0	4631	1580	55	2	4835	2	DMXL1	5	118500256	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3893191	118500256	62415004	259	3425											
FTMT	94033	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	121188112	121188112	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcaagaagccggaacaggacGactgggaaagcgggctgcat	15	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	121188112	G	A	121188112	3	1	43	1	0	0	0	0	1	0	0	0	6137	1058	37	1	456	1	FTMT	5	121188112	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2687856	121188112	59727148	260	3426											
SIL1	64374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	138287496	138287496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcttctttgcagtgagcGgctgctccgtggccaggatg	13	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	138287496	G	A	138287496	3	1	43	1	0	0	0	0	1	0	0	0	14419	1116	39	1	552	1	SIL1	5	138287496	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	17099384	138287496	42627764	261	3427											
NRG2	9542	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	139251392	139251392	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtctcgttgcacttccgGgcgtgccccgaccaggatga	13	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	139251392	G	T	139251392	2	4	43	1	0	0	0	0	0	0	0	1	10727	1219	43	5		5	NRG2	5	139251392	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	963896	139251392	41663868	262	3428											
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139815782	139815782	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caagtactgcagaaggagcaGacttacgcactgtggatcca	11	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	139815782	G	A	139815782	3	1	43	1	0	0	0	0	1	0	0	0	628	942	33	4	406	4	ANKHD1	5	139815782	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	564390	139815782	41099478	263	3429											
PCDHA6	56142	broad.mit.edu	37	chr5	140209042	140209042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgacaatgctccggcgttcGcgcagcccgagtacacagtg	12	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140209042	G	A	140209042	3	1	43	1	0	0	0	0	1	0	0	0	11607	1087	38	1	1368	1	PCDHA6	5	140209042	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	393260	140209042	40706218	264	3430											
PCDHA8	56140	hgsc.bcm.edu;mdanderson.org	37	chr5	140222343	140222343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatcttcacggtgtctgcGcgagacgcggacgcgcagga	14	13	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140222343	G	A	140222343	2	1	43	1	0	0	0	0	0	0	0	1	11609	1074	38	1		1	PCDHA8	5	140222343	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13301	140222343	40692917	265	3431											
PCDHA9	9752	hgsc.bcm.edu;mdanderson.org	37	chr5	140229541	140229541	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgctgacgcgcaggagaaCgccctggtgtcctactcgct	13	14	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	140229541	C	T	140229541	2	4	43	1	0	0	0	0	0	0	0	1	11610	535	19	1		1	PCDHA9	5	140229541	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7198	140229541	40685719	266	3432											
PCDHA11	56138	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	140250128	140250128	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacagtgtcggcgcgggaCgcggacgcgcaggagaacgc	17	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	140250128	C	T	140250128	2	4	43	1	0	0	0	0	0	0	0	1	11600	535	19	1		1	PCDHA11	5	140250128	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	20587	140250128	40665132	267	3433											
PCDHB8	56128	mdanderson.org	37	chr5	140559320	140559320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtacccgctgcagaatGgctccgcgccctgcaccgag	12	16	0	1	rs78133980		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140559320	G	A	140559320	3	1	43	1	0	0	0	0	1	0	0	0	11627	1348	47	4	1707	4	PCDHB8	5	140559320	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	309192	140559320	40355940	268	3434											
PCDHGA4	56111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	140735119	140735119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagatacagtgaagattttgCgggtagaggtggaaataatc	13	3	0	4	rs182004159	by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	140735119	C	T	140735119	3	4	43	1	0	0	0	0	1	0	0	0	11635	759	27	1	354	1	PCDHGA4	5	140735119	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	175799	140735119	40180141	269	3435											
PCDHGB2	56103	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	140740942	140740942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acggcgctctggaccgggagGagatcccagaatacaatctc	12	12	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140740942	G	A	140740942	3	1	43	1	0	0	0	0	1	0	0	0	11642	1175	41	3	1242	3	PCDHGB2	5	140740942	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5823	140740942	40174318	270	3436											
PCDHGB3	56102	broad.mit.edu	37	chr5	140750096	140750096	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagctggacaggggctcGctggtagggaacctcgccaa	17	10	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140750096	G	A	140750096	2	1	43	1	0	0	0	0	0	0	0	1	11643	1074	38	1		1	PCDHGB3	5	140750096	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9154	140750096	40165164	271	3437											
PCDHGB5	56101	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	140779700	140779700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcttgcaggaggtgctgcCggatatcactgaccgccctg	13	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	140779700	C	T	140779700	3	4	43	1	0	0	0	0	1	0	0	0	11645	652	23	1	2008	1	PCDHGB5	5	140779700	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	29604	140779700	40135560	272	3438											
RELL2	285613	broad.mit.edu	37	chr5	141019122	141019122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccttgcctccattgcagcCgcagcaagaggcctccactt	8	18	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	141019122	C	T	141019122	3	4	43	1	0	0	0	0	1	0	0	0	13311	652	23	1	423	1	RELL2	5	141019122	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	239422	141019122	39896138	273	3439											
PCDH1	5097	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	141233894	141233894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctgctcttggtccggcGgctgggagatgactggccag	18	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	141233894	G	A	141233894	3	1	43	1	0	0	0	0	1	0	0	0	11585	1116	39	1	290	1	PCDH1	5	141233894	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	214772	141233894	39681366	274	3440											
NR3C1	2908	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	142661564	142661564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcaatactcatggtcttatCcaaaaatgtttggaagcaat	6	7	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	142661564	C	T	142661564	3	4	43	1	0	0	0	0	1	0	0	0	10709	855	30	3	165	3	NR3C1	5	142661564	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1427670	142661564	38253696	275	3441											
SH3RF2	153769	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	145428792	145428792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcttcccaaacaattacGtcatccccattttcaggtgt	5	13	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	145428792	G	A	145428792	3	1	43	1	0	0	0	0	1	0	0	0	14357	1145	40	1	1328	1	SH3RF2	5	145428792	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2767228	145428792	35486468	276	3442											
PPARGC1B	133522	broad.mit.edu	37	chr5	149212386	149212386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggaggacaaggagccGggtgaggactgcccgagccc	17	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	149212386	G	A	149212386	2	1	43	1	0	0	0	0	0	0	0	1	12381	1103	39	1		1	PPARGC1B	5	149212386	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3783594	149212386	31702874	277	3443											
GALNT10	55568	broad.mit.edu;mdanderson.org	37	chr5	153795447	153795447	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accagccctgtcacgctgtaCgactgccacagcatgaaggg	11	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	153795447	C	T	153795447	2	4	43	1	0	0	0	0	0	0	0	1	6262	547	19	1		1	GALNT10	5	153795447	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4583061	153795447	27119813	278	3444											
ATP10B	23120	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	160047389	160047389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagcaggtccatgatgaccGagtcagcacccttggtgtag	12	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	160047389	G	A	160047389	3	1	43	1	0	0	0	0	1	0	0	0	1121	1059	37	1	2052	1	ATP10B	5	160047389	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6251942	160047389	20867871	279	3445											
GABRA6	2559	bcgsc.ca	37	chr5	161119027	161119027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtgtcatatgccactgccAtggattggttcatagctgtt	10	8	2	0	rs142999297		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	161119027	A	G	161119027	3	3	43	1	0	0	0	0	1	0	0	0	6217	217	8	4	937	4	GABRA6	5	161119027	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1071638	161119027	19796233	280	3446											
GABRG2	2566	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	161531032	161531032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtagtgaagacaacttccGgtaagatgcactggcaaaga	11	7	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	161531032	G	A	161531032	3	1	43	1	0	0	0	0	1	0	0	0	6224	1130	39	1	915	1	GABRG2	5	161531032	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	412005	161531032	19384228	281	3447											
SLIT3	6586	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	168096804	168096804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccttgttggcagtgctcGccgctaaagccgggctggca	13	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	168096804	G	A	168096804	2	1	43	1	0	0	0	0	0	0	0	1	14839	1074	38	1		1	SLIT3	5	168096804	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6565772	168096804	12818456	282	3448											
KCNIP1	30820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	169931585	169931585	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttcgctgccatgggggcCgtcatgggcaccttctcatc	12	14	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	169931585	C	T	169931585	2	4	43	1	0	0	0	0	0	0	0	1	8100	639	23	1		1	KCNIP1	5	169931585	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1834781	169931585	10983675	283	3449											
STK10	6793	broad.mit.edu	37	chr5	171482625	171482626	+	Frame_Shift_Ins	INS	-	-	C													cacgctgctcagctgcgctgINScccccgccgttgatgtggag					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	171482626	-	C	171482625	7	5	43	1	0	1	1	0	0	0	0	0	15386	1306	46	0	429	0	STK10	5	171482625	Frame_Shift_Ins	INS	-	TCGA-KN-8428-01A-11D-2310-10	1551040	171482625	9432635	284	3450											
COL23A1	91522	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	177679589	177679589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgggggcccctgtggtcCgggaggcccctgtgtgtgag	18	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	177679589	C	T	177679589	3	4	43	1	0	0	0	0	1	0	0	0	3711	661	23	1	704	1	COL23A1	5	177679589	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6196964	177679589	3235671	285	3451											
MAML1	9794	broad.mit.edu;mdanderson.org	37	chr5	179192794	179192794	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgaggagctgaacaggtcGgtgcccgatgaagacatgaa	14	8	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	179192794	G	A	179192794	2	1	43	1	0	0	0	0	0	0	0	1	9282	1103	39	1		1	MAML1	5	179192794	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1513205	179192794	1722466	286	3452											
SCGB3A1	92304	ucsc.edu;bcgsc.ca	37	chr5	180017682	180017682	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggagccctctatgaggTggttcacggggatgcccagg	16	10	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	180017682	T	C	180017682	3	2	43	1	0	0	0	0	1	0	0	0	13997	1696	59	2	113	2	SCGB3A1	5	180017682	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	824888	180017682	897578	287	3453											
FLT4	2324	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	180052908	180052908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgcagggtgtccagggcCgccagtgccactggatgctg	15	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	180052908	C	T	180052908	3	4	43	1	0	0	0	0	1	0	0	0	5993	652	23	1	2801	1	FLT4	5	180052908	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	35226	180052908	862352	288	3454											
FAM50B	26240	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	3850118	3850118	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagaagcgcgaaaggcagCgggagcagatggaggtgctg	18	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	3850118	C	T	3850118	3	4	43	1	0	0	0	0	1	0	0	0	5627	759	27	1	75	1	FAM50B	6	3850118	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		3850118	167264949	289	3455											
RREB1	6239	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	7231628	7231628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcactggcagtaacaccaCggcttcagacagcttaggag	11	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7231628	C	T	7231628	3	4	43	1	0	0	0	0	1	0	0	0	13774	536	19	1	3322	1	RREB1	6	7231628	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3381510	7231628	163883439	290	3456											
RREB1	6239	hgsc.bcm.edu	37	chr6	7247005	7247005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaggcaggcgccgggggcgCggcctcgcaggagcagaagc	20	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7247005	C	T	7247005	3	4	43	1	0	0	0	0	1	0	0	0	13774	768	27	1	4356	1	RREB1	6	7247005	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	15377	7247005	163868062	291	3457											
DSP	1832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	7580988	7580988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcaaacagtagtgcgaCggagacaataaacaaactga	10	7	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7580988	C	T	7580988	3	4	43	1	0	0	0	0	1	0	0	0	4818	536	19	1	4655	1	DSP	6	7580988	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	333983	7580988	163534079	292	3458											
TBC1D7	51256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	13321234	13321234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggcatcactaacaaagCgaacgactttcagggcatga	11	9	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	13321234	C	T	13321234	3	4	43	1	0	0	0	0	1	0	0	0	15728	768	27	1	614	1	TBC1D7	6	13321234	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5740246	13321234	157793833	293	3459											
HIST1H3C	8352	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	26045706	26045706	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcgcaagcagcttgctaCtaaagcagcccgtaagagcg	11	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	26045706	C	T	26045706	3	4	43	1	0	0	0	0	1	0	0	0	7215	565	20	4	70	4	HIST1H3C	6	26045706	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12724472	26045706	145069361	294	3460											
HIST1H1T	3010	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	26108074	26108074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgagggacagtttgatgCggctgttattcttctctacg	11	8	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	26108074	C	T	26108074	3	4	43	1	0	0	0	0	1	0	0	0	7185	768	27	1	379	1	HIST1H1T	6	26108074	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	62368	26108074	145006993	295	3461											
UBD	10537	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	29524017	29524017	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagcaaaagaacctggtcCtgcacaggaaccttggtctt	9	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	29524017	C	A	29524017	3	1	43	1	0	0	0	0	1	0	0	0	16949	680	24	5	363	5	UBD	6	29524017	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3415943	29524017	141591050	296	3462											
DDR1	780	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr6	30864435	30864435	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggagcctgagaagccaggCgccccgcttctgcccccacc	11	18	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30864435	C	T	30864435	2	4	43	1	0	0	0	0	0	0	0	1	4368	755	27	1		1	DDR1	6	30864435	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1340418	30864435	140250632	297	3463											
HLA-B	3106	mdanderson.org	37	chr6	31324176	31324176	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggaggaggcgcccgtcCggccccacgtcgcagccgta	15	18	0	0	rs12721836	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	31324176	C	G	31324176	2	3	43	1	0	0	0	0	0	0	0	1	7254	639	23	5		5	HLA-B	6	31324176	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	459741	31324176	139790891	298	3464											
MICB	4277	bcgsc.ca	37	chr6	31475183	31475183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctttttttcagggaaggCgctggtgcttcagagtcaac	11	10	3	1	rs45470602		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	31475183	C	T	31475183	3	4	43	1	0	0	0	0	1	0	0	0	9652	768	27	1	917	1	MICB	6	31475183	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	151007	31475183	139639884	299	3465											
SLC39A7	7922	ucsc.edu;mdanderson.org	37	chr6	33169433	33169433	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcactctctgggcttaTgtgagtctccaggggatggg	15	9	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	33169433	T	C	33169433	2	2	43	1	0	0	0	0	0	0	0	1	14721	1478	51	4		4	SLC39A7	6	33169433	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1694250	33169433	137945634	300	3466											
MDGA1	266727	hgsc.bcm.edu	37	chr6	37618098	37618098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcggccgcggcttgccccGcacctcgcattgcagctcgg	14	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	37618098	G	A	37618098	3	1	43	1	0	0	0	0	1	0	0	0	9483	1086	38	1	1511	1	MDGA1	6	37618098	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4448665	37618098	133496969	301	3467											
DNAH8	1769	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	38773263	38773263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgtctatagaacagcGgaaacacgttgtttttggaa	9	6	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	38773263	G	A	38773263	3	1	43	1	0	0	0	0	1	0	0	0	4644	1116	39	1	2464	1	DNAH8	6	38773263	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1155165	38773263	132341804	302	3468											
USP49	25862	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr6	41767668	41767668	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtttgggattggattttcGtcgtttgcctatgtggtttg	15	4	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	41767668	G	A	41767668	4	1	43	1	0	0	0	0	0	1	0	0	17186	1153	40	1	360	1	USP49	6	41767668	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2994405	41767668	129347399	303	3469											
UBR2	23304	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	42641562	42641562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcattgacgagatttgccGcagcacactggacagtggca	13	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42641562	G	A	42641562	3	1	43	1	0	0	0	0	1	0	0	0	17008	1087	38	1	4412	1	UBR2	6	42641562	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	873894	42641562	128473505	304	3470											
CUL9	23113	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	43164505	43164505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtttaggcactcagggaTagcaccaagaacagaaccta	10	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	43164505	T	C	43164505	3	2	43	1	0	0	0	0	1	0	0	0	4092	1406	49	4	2746	4	CUL9	6	43164505	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	522943	43164505	127950562	305	3471											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	43309889	43309889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcagtgcgctttatggCatcttgcttggcctcactct	9	12	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	43309889	C	T	43309889	3	4	43	1	0	0	0	0	1	0	0	0	17941	710	25	4	3514	4	ZNF318	6	43309889	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	145384	43309889	127805178	306	3472											
ZNF318	24149	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	43323076	43323076	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgaggaacgtcgatcagCtgagaagcagtggtcaactg	13	8	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	43323076	C	A	43323076	3	1	43	1	0	0	0	0	1	0	0	0	17941	797	28	5	4871	5	ZNF318	6	43323076	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	13187	43323076	127791991	307	3473											
ABCC10	89845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	43415467	43415467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcgtggagttccaggacGtggtgttggcgtaccggcca	19	9	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	43415467	G	A	43415467	3	1	43	1	0	0	0	0	1	0	0	0	50	1145	40	1	3729	1	ABCC10	6	43415467	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	92391	43415467	127699600	308	3474											
SPATS1	221409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	44329698	44329698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtctctatcagagaggacGgtggacaagtgctttgggag	16	6	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44329698	G	A	44329698	2	1	43	1	0	0	0	0	0	0	0	1	15118	1103	39	1		1	SPATS1	6	44329698	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	914231	44329698	126785369	309	3475											
SUPT3H	8464	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	45290634	45290634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtcaaagttgaagaacGttgttccaaagaccaccatg	8	10	1	3	rs9472463	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	45290634	G	A	45290634	3	1	43	1	0	0	0	0	1	0	0	0	15497	1145	40	1	1010	1	SUPT3H	6	45290634	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	960936	45290634	125824433	310	3476											
RUNX2	860	mdanderson.org	37	chr6	45459753	45459753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatttagggcgcattcctcAtcccagtatgagagtaggtg	12	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	45459753	A	G	45459753	3	3	43	1	0	0	0	0	1	0	0	0	13843	217	8	4	795	4	RUNX2	6	45459753	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	169119	45459753	125655314	311	3477											
PKHD1	5314	hgsc.bcm.edu;bcgsc.ca	37	chr6	51695719	51695719	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attgttgtatcctccccagcCttcttcaacaccttgccatg	5	15	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	51695719	C	A	51695719	3	1	43	1	0	0	0	0	1	0	0	0	12051	681	24	5	4085	5	PKHD1	6	51695719	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6235966	51695719	119419348	312	3478											
TINAG	27283	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	54214609	54214609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgatgggcgaggaaaacGgcatgccacgaagccatgtc	14	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54214609	G	A	54214609	3	1	43	1	0	0	0	0	1	0	0	0	16025	1116	39	1	1021	1	TINAG	6	54214609	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2518890	54214609	116900458	313	3479											
COL21A1	81578	broad.mit.edu	37	chr6	56044473	56044473	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgaaggcttgttggcaatAgctctaagttcggcatcttc	11	9	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	56044473	A	G	56044473	2	3	43	1	0	0	0	0	0	0	0	1	3709	407	15	2		2	COL21A1	6	56044473	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1829864	56044473	115070594	314	3480											
DST	667	broad.mit.edu	37	chr6	56335939	56335939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcaataaattcctgccgcGttattttcccatcctggtct	5	13	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56335939	G	A	56335939	3	1	43	1	0	0	0	0	1	0	0	0	4820	1145	40	1	1134	1	DST	6	56335939	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	291466	56335939	114779128	315	3481											
PHIP	55023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	79711796	79711796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tacaaaattgttggcatcacGaataagtggccgataatcac	8	8	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	79711796	G	A	79711796	3	1	43	1	0	0	0	0	1	0	0	0	11922	1058	37	1	3862	1	PHIP	6	79711796	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	23375857	79711796	91403271	316	3482											
TTK	7272	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	80749554	80749554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcatgaaattgaatttcccGatattccagagaaagatctt	6	7	2	4	rs2230512	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	80749554	G	A	80749554	3	1	43	1	0	0	0	0	1	0	0	0	16826	1058	37	1	2342	1	TTK	6	80749554	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1037758	80749554	90365513	317	3483											
SNX14	57231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	86248557	86248557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacatgctcaagacttaccGaaaatcatccaaacttaggc	5	12	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	86248557	G	A	86248557	3	1	43	1	0	0	0	0	1	0	0	0	14983	1072	37	1	1422	1	SNX14	6	86248557	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5499003	86248557	84866510	318	3484											
C6orf165	154313	mdanderson.org;bcgsc.ca	37	chr6	88173817	88173817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaattgttcccaagtgtAccctccaaaggacactagca	7	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	88173817	A	G	88173817	3	3	43	1	0	0	0	0	1	0	0	0	2362	391	14	2	1764	2	C6orf165	6	88173817	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1925260	88173817	82941250	319	3485											
CNR1	1268	broad.mit.edu	37	chr6	88853689	88853689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acactggctgcattgtttgcGtgtttgtgcaggcagtccga	13	9	0	0	rs75641625	bycluster;byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	88853689	G	A	88853689	2	1	43	1	0	0	0	0	0	0	0	1	3660	1136	40	1		1	CNR1	6	88853689	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	679872	88853689	82261378	320	3486											
ANKRD6	22881	hgsc.bcm.edu;ucsc.edu	37	chr6	90333671	90333671	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgctcataatcacccTaaaaagaggaacaggcatcg	8	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	90333671	T	C	90333671	2	2	43	1	0	0	0	0	0	0	0	1	685	1509	53	2		2	ANKRD6	6	90333671	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1479982	90333671	80781396	321	3487											
BACH2	60468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	90661558	90661558	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaggcaaactgtaacagCggcccaaagcccctggctgt	12	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	90661558	C	T	90661558	2	4	43	1	0	0	0	0	0	0	0	1	1288	755	27	1		1	BACH2	6	90661558	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	327887	90661558	80453509	322	3488											
MAP3K7	6885	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	91261815	91261815	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttcctccattgaagggcGctgggaaggatctttagacc	11	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	91261815	G	A	91261815	3	1	43	1	0	0	0	0	1	0	0	0	9332	1087	38	1	1040	1	MAP3K7	6	91261815	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	600257	91261815	79853252	323	3489											
PRDM1	639	broad.mit.edu;mdanderson.org	37	chr6	106553250	106553250	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgccagctttcatcccctcGtacaacgctcactaccccaa	4	20	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	106553250	G	A	106553250	2	1	43	1	0	0	0	0	0	0	0	1	12539	1132	40	1		1	PRDM1	6	106553250	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15291435	106553250	64561817	324	3490											
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	107000090	107000090	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccaaggagacgaaatcAggtaactttaaaaatattct	8	7	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	107000090	A	G	107000090	3	3	43	1	0	0	0	0	1	0	0	0	430	202	7	2	4297	2	AIM1	6	107000090	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	446840	107000090	64114977	325	3491											
SCML4	256380	bcgsc.ca	37	chr6	108042039	108042039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggtggcagcaggaccacCcccaaggtggctgtctccag	14	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	108042039	C	T	108042039	3	4	43	1	0	0	0	0	1	0	0	0	14008	623	22	3	415	3	SCML4	6	108042039	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1041949	108042039	63073028	326	3492											
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	109766433	109766433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggccagctccagcttcaCgccctcggcctctagctccc	8	20	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	109766433	C	T	109766433	3	4	43	1	0	0	0	0	1	0	0	0	9646	536	19	1	371	1	MICAL1	6	109766433	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1724394	109766433	61348634	327	3493											
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	109769510	109769510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcctgtgcagacaccaccGgtgtgatgcccagctcattc	11	15	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	109769510	G	A	109769510	3	1	43	1	0	0	0	0	1	0	0	0	9646	1116	39	1	1504	1	MICAL1	6	109769510	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3077	109769510	61345557	328	3494											
NCOA7	135112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr6	126210643	126210643	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgttgaactgaagggggcGctagatttagaaacctgtga	14	5	0	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	126210643	G	A	126210643	2	1	43	1	0	0	0	0	0	0	0	1	10313	1074	38	1		1	NCOA7	6	126210643	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16441133	126210643	44904424	329	3495											
BCLAF1	9774	hgsc.bcm.edu	37	chr6	136594328	136594328	+	Splice_Site	DEL	G	G	-													ctgacttgaagtattgctctGttgatttagaagaaatactg					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	136594328	G	-	136594328	8	5	43	1	0	1	0	1	0	0	1	0	1387	1392	48	0		0	BCLAF1	6	136594328	Splice_Site	DEL	G	TCGA-KN-8428-01A-11D-2310-10	10383685	136594328	34520739	330	3496											
KIAA1244	57221	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	138655393	138655393	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctggcatcgggggcgccGccaacctctaccgccagtct	12	16	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	138655393	G	A	138655393	3	1	43	1	0	0	0	0	1	0	0	0	8278	1087	38	1	5540	1	KIAA1244	6	138655393	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2061065	138655393	32459674	331	3497											
STXBP5	134957	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	147527114	147527114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccatccctagactgttcGccatggatttccctatcaac	6	15	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	147527114	G	A	147527114	3	1	43	1	0	0	0	0	1	0	0	0	15456	1087	38	1	164	1	STXBP5	6	147527114	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8871721	147527114	23587953	332	3498											
TIAM2	26230	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	155450720	155450720	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttccactctgttggccaCgagctggcagataaccacat	10	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	155450720	C	T	155450720	2	4	43	1	0	0	0	0	0	0	0	1	15995	535	19	1		1	TIAM2	6	155450720	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7923606	155450720	15664347	333	3499											
NOX3	50508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	155764489	155764489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcggccagaagtccctggGcctcctcggactggctccag	14	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	155764489	G	A	155764489	3	1	43	1	0	0	0	0	1	0	0	0	10636	1203	42	3	1338	3	NOX3	6	155764489	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	313769	155764489	15350578	334	3500											
PARK2	5071	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	162206903	162206903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagtctaagcaaatcaCgtggcgggagttgcactgga	13	8	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	162206903	C	T	162206903	3	4	43	1	0	0	0	0	1	0	0	0	11528	536	19	1	649	1	PARK2	6	162206903	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6442414	162206903	8908164	335	3501											
TMEM184A	202915	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	1588279	1588279	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtagagggcgaggctgacGgaggcgttgtagatgagggt	21	5	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1588279	G	A	1588279	2	1	43	1	0	0	0	0	0	0	0	1	16208	1103	39	1		1	TMEM184A	7	1588279	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1588279	157550384	336	3502											
RADIL	55698	mdanderson.org	37	chr7	4876100	4876100	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcggcagcgggcagggcGttcactgggctcaggctggt	20	10	2	0	rs138811640		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	4876100	G	A	4876100	2	1	43	1	0	0	0	0	0	0	0	1	13089	1136	40	1		1	RADIL	7	4876100	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3287821	4876100	154262563	337	3503											
CYTH3	9265	broad.mit.edu;mdanderson.org	37	chr7	6217521	6217521	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttataaaggaactgggcgaCgtcttctggggaactctgta	12	7	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	6217521	C	T	6217521	3	4	43	1	0	0	0	0	1	0	0	0	4236	536	19	1	934	1	CYTH3	7	6217521	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1341421	6217521	152921142	338	3504											
COL28A1	340267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	7472278	7472278	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacaggcacaccaggataGccatcacctttgagtcctgg	9	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	7472278	G	A	7472278	2	1	43	1	0	0	0	0	0	0	0	1	3715	958	34	4		4	COL28A1	7	7472278	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1254757	7472278	151666385	339	3505											
DGKB	1607	broad.mit.edu	37	chr7	14620499	14620499	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttacctcctccccatcGcaggcatcttgctagatcat	6	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	14620499	G	A	14620499	4	1	43	1	0	0	0	0	0	1	0	0	4503	1095	38	1	861	1	DGKB	7	14620499	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7148221	14620499	144518164	340	3506											
HDAC9	9734	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	18975462	18975462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgacgaagcaattgatgaCattggctgatggacgtgtgg	14	5	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	18975462	C	T	18975462	3	4	43	1	0	0	0	0	1	0	0	0	7072	478	17	4	3033	4	HDAC9	7	18975462	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4354963	18975462	140163201	341	3507											
ABCB5	340273	hgsc.bcm.edu;mdanderson.org	37	chr7	20778687	20778687	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatattccaaagccaaatcGggggctgcgcatctgtttgc	11	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	20778687	G	A	20778687	2	1	43	1	0	0	0	0	0	0	0	1	44	1103	39	1		1	ABCB5	7	20778687	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1803225	20778687	138359976	342	3508											
GARS	2617	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	30662010	30662010	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagaaggatgcaaaactggtGatggagtatcttgccatttg	12	5	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	30662010	G	A	30662010	2	1	43	1	0	0	0	0	0	0	0	1	6296	1277	45	4		4	GARS	7	30662010	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9883323	30662010	128476653	343	3509											
AQP1	358	ucsc.edu;mdanderson.org	37	chr7	30951659	30951659	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggggaacaaccagacggcGgtccaggacaacgtgaaggt	16	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	30951659	G	A	30951659	2	1	43	1	0	0	0	0	0	0	0	1	823	1103	39	1		1	AQP1	7	30951659	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	289649	30951659	128187004	344	3510											
BMPER	168667	broad.mit.edu;bcgsc.ca	37	chr7	34006162	34006162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctgagccttgtgttctaCgccagtgccaggtaaagttc	12	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	34006162	C	T	34006162	3	4	43	1	0	0	0	0	1	0	0	0	1473	536	19	1	405	1	BMPER	7	34006162	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3054503	34006162	125132501	345	3511											
URGCP	55665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	43917672	43917672	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgacactcctcacagtcctCgtcgacctttaggcccagtt	7	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	43917672	C	T	43917672	3	4	43	1	0	0	0	0	1	0	0	0	17132	893	31	1	1409	1	URGCP	7	43917672	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9911510	43917672	115220991	346	3512											
POLM	27434	mdanderson.org	37	chr7	44121936	44121936	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgacccatgcgaggctcgacCaggtagatggcgactcccgg	14	14	0	1	rs3218655	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44121936	C	A	44121936	2	1	43	1	0	0	0	0	0	0	0	1	12286	581	21	5		5	POLM	7	44121936	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	204264	44121936	115016727	347	3513											
NPC1L1	29881	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	44579467	44579467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtggcagctgcagggaCgcgcacacggctgcaggagt	17	12	0	0	rs149017550	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	44579467	C	T	44579467	3	4	43	1	0	0	0	0	1	0	0	0	10650	536	19	1	3626	1	NPC1L1	7	44579467	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	457531	44579467	114559196	348	3514											
UPP1	7378	broad.mit.edu	37	chr7	48134391	48134391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttggcggaatggcggccaCgggagccaatgcagagaaag	17	8	0	1	rs11971829	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	48134391	C	T	48134391	3	4	43	1	0	0	0	0	1	0	0	0	17118	536	19	1	13	1	UPP1	7	48134391	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3554924	48134391	111004272	349	3515											
LAT2	7462	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	73630393	73630393	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctgtgtgtgcgctgctcaCgcccaggtaagcgggggtct	16	11	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73630393	C	T	73630393	3	4	43	1	0	0	0	0	1	0	0	0	8707	536	19	1	90	1	LAT2	7	73630393	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	25496002	73630393	85508270	350	3516											
POR	5447	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	75608803	75608803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgttctacggctcccagaCggggactgcagaggagtttg	15	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	75608803	C	T	75608803	3	4	43	1	0	0	0	0	1	0	0	0	12337	536	19	1	282	1	POR	7	75608803	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1978410	75608803	83529860	351	3517											
SRCRB4D	136853	broad.mit.edu;mdanderson.org	37	chr7	76024631	76024631	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggatggcagtgctgtgagCgttgggggacccaggcctag	19	8	0	1	rs139627347		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	76024631	C	T	76024631	2	4	43	1	0	0	0	0	0	0	0	1	15237	755	27	1		1	SRCRB4D	7	76024631	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	415828	76024631	83114032	352	3518											
SRCRB4D	136853	broad.mit.edu;bcgsc.ca	37	chr7	76030355	76030355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggagtgggctgtagggCgctggctgaaacagagtgag	19	6	0	3	rs77067369	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	76030355	C	T	76030355	3	4	43	1	0	0	0	0	1	0	0	0	15237	768	27	1	1624	1	SRCRB4D	7	76030355	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5724	76030355	83108308	353	3519											
CACNA2D1	781	broad.mit.edu;bcgsc.ca	37	chr7	81620513	81620513	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaattacctgtaatctgtgCcattgacaggtgtccatgtg	9	8	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	81620513	C	T	81620513	3	4	43	1	0	0	0	0	1	0	0	0	2573	739	26	3	1567	3	CACNA2D1	7	81620513	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5590158	81620513	77518150	354	3520											
STEAP2	261729	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	89854552	89854552	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accattcgacttattagatgCggctatcatgtggtcatagg	10	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	89854552	C	T	89854552	2	4	43	1	0	0	0	0	0	0	0	1	15378	776	27	1		1	STEAP2	7	89854552	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8234039	89854552	69284111	355	3521											
AKAP9	10142	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr7	91631833	91631833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaagagttacaagaggagTatgcttgccttctcaaagta	9	7	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	91631833	T	C	91631833	3	2	43	1	0	0	0	0	1	0	0	0	459	1638	57	2	2632	2	AKAP9	7	91631833	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1777281	91631833	67506830	356	3522											
CDK6	1021	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	92252390	92252390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcaacatctgaacttccacGaaaaagaggcctaaaagaat	6	9	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	92252390	G	A	92252390	3	1	43	1	0	0	0	0	1	0	0	0	3177	1058	37	1	334	1	CDK6	7	92252390	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	620557	92252390	66886273	357	3523											
LMTK2	22853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	97823453	97823453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgatcgcccctgcaccctcGcttccacggggaccaacacg	9	19	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	97823453	G	A	97823453	3	1	43	1	0	0	0	0	1	0	0	0	8923	1087	38	1	3718	1	LMTK2	7	97823453	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5571063	97823453	61315210	358	3524											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	98576517	98576517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggactgccatgaaggaggCgctggtgcaggtgagacgcc	17	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	98576517	C	T	98576517	3	4	43	1	0	0	0	0	1	0	0	0	16706	768	27	1	8767	1	TRRAP	7	98576517	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	753064	98576517	60562146	359	3525											
CYP3A5	1577	mdanderson.org;bcgsc.ca	37	chr7	99247772	99247772	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcatgttcatgagagcaAacctcatgccaatgcagttt	8	9	3	1	rs41279854		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	99247772	A	G	99247772	3	3	43	1	0	0	0	0	1	0	0	0	4211	14	1	4	179	4	CYP3A5	7	99247772	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	671255	99247772	59890891	360	3526											
ZNF3	7551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	99669271	99669271	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attcatagggtttctcccccGtgtggatcctccgatgcaga	10	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	99669271	G	A	99669271	3	1	43	1	0	0	0	0	1	0	0	0	17934	1145	40	1	637	1	ZNF3	7	99669271	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	421499	99669271	59469392	361	3527											
COPS6	10980	broad.mit.edu	37	chr7	99688529	99688529	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgtctccttcacagcttcCtgtcagcgtttttgagtctg	8	13	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	99688529	C	A	99688529	3	1	43	1	0	0	0	0	1	0	0	0	3766	681	24	5	513	5	COPS6	7	99688529	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	19258	99688529	59450134	362	3528											
FBXO24	26261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	100198383	100198383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccaaacgttgcaggaccGcacggagaagatgaaggaga	14	8	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	100198383	G	A	100198383	3	1	43	1	0	0	0	0	1	0	0	0	5784	1087	38	1	1799	1	FBXO24	7	100198383	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	509854	100198383	58940280	363	3529											
ZAN	7455	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	100334486	100334486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccgtgggggagtggcccGcctgctcagccccgacctat	13	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	100334486	G	A	100334486	3	1	43	1	0	0	0	0	1	0	0	0	17619	1087	38	1	322	1	ZAN	7	100334486	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	136103	100334486	58804177	364	3530											
SLC12A9	56996	broad.mit.edu;bcgsc.ca	37	chr7	100453339	100453339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactttcagtcatgatcagcCgcacactggggcccgaggtc	11	14	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	100453339	C	T	100453339	3	4	43	1	0	0	0	0	1	0	0	0	14488	652	23	1	338	1	SLC12A9	7	100453339	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	118853	100453339	58685324	365	3531											
SLC12A9	56996	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	100454700	100454700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggggccgagggacatccGcttgactcctaggcctggcc	15	13	0	1	rs150811167	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	100454700	G	A	100454700	3	1	43	1	0	0	0	0	1	0	0	0	14488	1087	38	1	673	1	SLC12A9	7	100454700	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1361	100454700	58683963	366	3532											
SRRT	51593	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	100484814	100484814	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacccaaccgcatcagtcaCggggaaggtgagctccaggt	12	14	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	100484814	C	T	100484814	2	4	43	1	0	0	0	0	0	0	0	1	15272	535	19	1		1	SRRT	7	100484814	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	30114	100484814	58653849	367	3533											
MYL10	93408	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	101259535	101259535	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaacctttcccttcagtgtcGaacactttgaaggcgtggag	10	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	101259535	G	A	101259535	2	1	43	1	0	0	0	0	0	0	0	1	10122	1049	37	1		1	MYL10	7	101259535	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	774721	101259535	57879128	368	3534											
FBXL13	222235	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	102566787	102566787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgagacacaggacccccGggcagccctcagaaatgtgt	12	12	1	2	rs150674888	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	102566787	G	A	102566787	3	1	43	1	0	0	0	0	1	0	0	0	5758	1116	39	1	1439	1	FBXL13	7	102566787	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1307252	102566787	56571876	369	3535											
CDHR3	222256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	105669000	105669000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttctgttctctgcagaaaCgaagactgcagagagagacg	12	8	2	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	105669000	C	T	105669000	3	4	43	1	0	0	0	0	1	0	0	0	3149	536	19	1	2342	1	CDHR3	7	105669000	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3102213	105669000	53469663	370	3536											
LAMB1	3912	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	107605032	107605032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcctccgcttcatagaggtAgtgatccagggtggcaaagt	12	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	107605032	A	G	107605032	3	3	43	1	0	0	0	0	1	0	0	0	8672	420	15	2	3781	2	LAMB1	7	107605032	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1936032	107605032	51533631	371	3537											
LAMB4	22798	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	107717415	107717415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaggacatgtgaatgagCgtgggactctccttgcaaag	12	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	107717415	C	T	107717415	3	4	43	1	0	0	0	0	1	0	0	0	8675	768	27	1	3259	1	LAMB4	7	107717415	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	112383	107717415	51421248	372	3538											
DOCK4	9732	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	111368531	111368531	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtagacgctgtacgggggCggagtcttgctctccttgcg	15	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	111368531	C	T	111368531	2	4	43	1	0	0	0	0	0	0	0	1	4726	755	27	1		1	DOCK4	7	111368531	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3651116	111368531	47770132	373	3539											
WNT2	7472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	116918232	116918232	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagcggttgtccagtcagCgttcttgggggccttgcatg	15	9	2	0	rs143749132		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	116918232	C	T	116918232	3	4	43	1	0	0	0	0	1	0	0	0	17492	768	27	1	26	1	WNT2	7	116918232	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5549701	116918232	42220431	374	3540											
CTTNBP2	83992	hgsc.bcm.edu;ucsc.edu	37	chr7	117407222	117407222	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgcctacacaagatttcTaggcagttctataaagacaa	7	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	117407222	T	C	117407222	2	2	43	1	0	0	0	0	0	0	0	1	4076	1509	53	2		2	CTTNBP2	7	117407222	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	488990	117407222	41731441	375	3541											
WASL	8976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	123346348	123346348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taccagatttcctttgtcgaCggcccaaaaggtctgtaact	8	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	123346348	C	T	123346348	3	4	43	1	0	0	0	0	1	0	0	0	17362	536	19	1	1130	1	WASL	7	123346348	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5939126	123346348	35792315	376	3542											
GRM8	2918	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	126173105	126173105	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccaataggtttggcttcattGaaagtctctgggacacctct	9	10	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	126173105	G	T	126173105	3	4	43	1	0	0	0	0	1	0	0	0	6861	1281	45	5	457	5	GRM8	7	126173105	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2826757	126173105	32965558	377	3543											
KLF14	136259	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	130417993	130417993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgcggggagttcgacgacGtccccggtactcgatcatat	13	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	130417993	G	A	130417993	3	1	43	1	0	0	0	0	1	0	0	0	8403	1145	40	1	107	1	KLF14	7	130417993	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4244888	130417993	28720670	378	3544											
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	135292055	135292055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacatcttggagaaaggaaCggaagggagaacaggcccag	14	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	135292055	C	T	135292055	3	4	43	1	0	0	0	0	1	0	0	0	10838	536	19	1	3217	1	NUP205	7	135292055	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4874062	135292055	23846608	379	3545											
UBN2	254048	broad.mit.edu;hgsc.bcm.edu	37	chr7	138969008	138969010	+	In_Frame_Del	DEL	CAG	CAG	-													cagcccagtggaatgaacatCagcagacagtctcccacctt					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	138969010	CAG	-	138969008	7	5	43	1	0	1	0	1	0	0	0	0	16999	816	29	0	3415	0	UBN2	7	138969008	In_Frame_Del	DEL	CAG	TCGA-KN-8428-01A-11D-2310-10	3676953	138969008	20169655	380	3546	92	2									
UBN2	254048	bcgsc.ca	37	chr7	138969009	138969011	+	In_Frame_Del	DEL	CAG	CAG	-													agcccagtggaatgaacatcAgcagacagtctcccaccttg					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	138969011	CAG	-	138969009	7	5	43	1	0	1	0	1	0	0	0	0	16999	188	7	0	3416	0	UBN2	7	138969009	In_Frame_Del	DEL	CAG	TCGA-KN-8428-01A-11D-2310-10	1	138969009	20169654	381	3547	92	2									
OR9A4	130075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	141619431	141619431	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtgttgtgattggctaCggcagctgcttgtttctcta	11	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	141619431	C	T	141619431	2	4	43	1	0	0	0	0	0	0	0	1	11328	547	19	1		1	OR9A4	7	141619431	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2650422	141619431	17519232	382	3548											
PRSS1	5644	mdanderson.org	37	chr7	142460764	142460764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaatggacagctccaaggaGttgtctcctggggtgatggc	15	9	1	1	rs200902389		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	142460764	G	A	142460764	3	1	43	1	0	0	0	0	1	0	0	0	12703	1029	36	4	655	4	PRSS1	7	142460764	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	841333	142460764	16677899	383	3549											
PRSS1	5644	mdanderson.org	37	chr7	142460778	142460778	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggagttgtctcctggggTgatggctgtgcccagaagaa	15	8	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	142460778	T	C	142460778	2	2	43	1	0	0	0	0	0	0	0	1	12703	1683	59	2		2	PRSS1	7	142460778	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	14	142460778	16677885	384	3550											
OR2A2	442361	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	143807471	143807471	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcccagactctaatcaaCgagaggagcaggagaaaatg	12	8	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	143807471	C	T	143807471	4	4	43	1	0	0	0	0	0	1	0	0	11056	528	19	1	798	1	OR2A2	7	143807471	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1346693	143807471	15331192	385	3551											
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	149483252	149483252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgggctgagcctgcgtcGtgctggcctcttcctgctgc	13	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	149483252	G	A	149483252	3	1	43	1	0	0	0	0	1	0	0	0	15289	1145	40	1	3406	1	SSPO	7	149483252	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5675781	149483252	9655411	386	3552											
TMEM176B	28959	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	150490188	150490188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcaccctcagcatctgCatgtaagctctacactcctc	5	17	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	150490188	C	T	150490188	3	4	43	1	0	0	0	0	1	0	0	0	16197	710	25	4	236	4	TMEM176B	7	150490188	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1006936	150490188	8648475	387	3553											
KCNH2	3757	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	150648045	150648045	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgttggtgtaggaccaggcGtgctggaagtactcctcgag	15	10	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	150648045	G	A	150648045	2	1	43	1	0	0	0	0	0	0	0	1	8093	1136	40	1		1	KCNH2	7	150648045	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	157857	150648045	8490618	388	3554											
MYOM2	9172	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	2033488	2033488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagccacccactccccGtggcaaggacccgctcatgt	11	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	2033488	G	A	2033488	3	1	43	1	0	0	0	0	1	0	0	0	10170	1145	40	1	1660	1	MYOM2	8	2033488	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		2033488	144330534	389	3555											
MTUS1	57509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	17503472	17503472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggggctagggaaggagcccGaattccttggtgactgcaaa	15	8	0	1	rs148435996	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	17503472	G	A	17503472	3	1	43	1	0	0	0	0	1	0	0	0	10043	1059	37	1	40	1	MTUS1	8	17503472	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15469984	17503472	128860550	390	3556											
CSGALNACT1	55790	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr8	19363316	19363316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accaccacccgggaaatccaCgcaagcagcccccggcgaac	9	19	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	19363316	C	T	19363316	2	4	43	1	0	0	0	0	0	0	0	1	3969	523	19	1		1	CSGALNACT1	8	19363316	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1859844	19363316	127000706	391	3557											
ATP6V1B2	526	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	20070346	20070346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccacagctgaatttctggCgtaccaatgtgagaaacatg	9	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20070346	C	T	20070346	3	4	43	1	0	0	0	0	1	0	0	0	1183	768	27	1	891	1	ATP6V1B2	8	20070346	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	707030	20070346	126293676	392	3558											
LZTS1	11178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	20110814	20110814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctgggtgatgttgtgggCggagcccccaaaacggcttg	16	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20110814	C	T	20110814	3	4	43	1	0	0	0	0	1	0	0	0	9211	768	27	1	1170	1	LZTS1	8	20110814	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	40468	20110814	126253208	393	3559											
XPO7	23039	hgsc.bcm.edu	37	chr8	21827087	21827087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaacagcgaatagatattCgtaagtggagaattttctgt	11	4	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	21827087	C	T	21827087	3	4	43	1	0	0	0	0	1	0	0	0	17555	898	31	1	294	1	XPO7	8	21827087	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1716273	21827087	124536935	394	3560											
EPB49	2039	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	21924625	21924625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcccccgggagcgtgagCccctcccgagattccagtgt	11	17	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	21924625	C	T	21924625	2	4	43	1	0	0	0	0	0	0	0	1	5198	738	26	3		3	EPB49	8	21924625	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	97538	21924625	124439397	395	3561											
HR	55806	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	21983099	21983099	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggcaatggctcacctccGcacttgctgagagtggcagg	15	11	1	1	rs138624433		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21983099	G	A	21983099	3	1	43	1	0	0	0	0	1	0	0	0	7405	1086	38	1	2081	1	HR	8	21983099	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	58474	21983099	124380923	396	3562											
LGI3	203190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	22012104	22012104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgacagtcctgtgaaggCgttgtctccaatcagtgtaa	12	9	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	22012104	C	T	22012104	3	4	43	1	0	0	0	0	1	0	0	0	8816	768	27	1	1351	1	LGI3	8	22012104	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	29005	22012104	124351918	397	3563											
LOXL2	4017	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	23174480	23174480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actttctgagcaggcaactcCggccccgtactgcactccgc	9	17	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	23174480	C	T	23174480	3	4	43	1	0	0	0	0	1	0	0	0	8972	661	23	1	730	1	LOXL2	8	23174480	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1162376	23174480	123189542	398	3564											
LOXL2	4017	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr8	23174516	23174516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgccctgggggcaggccaCgtcctccccgtcgtggcggc	15	18	0	0	rs145002005		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	23174516	C	T	23174516	3	4	43	1	0	0	0	0	1	0	0	0	8972	536	19	1	766	1	LOXL2	8	23174516	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	36	23174516	123189506	399	3565											
NEFL	4747	broad.mit.edu	37	chr8	24813771	24813771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgccttctcctgcgtgcGgatggacttgaggtcgttgc	14	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	24813771	G	A	24813771	3	1	43	1	0	0	0	0	1	0	0	0	10394	1116	39	1	1389	1	NEFL	8	24813771	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1639255	24813771	121550251	400	3566											
KCTD9	54793	broad.mit.edu	37	chr8	25296836	25296836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttacaatgagctgtccatgaCgcaagtagttcaaaatgggt	10	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	25296836	C	T	25296836	3	4	43	1	0	0	0	0	1	0	0	0	8177	536	19	1	739	1	KCTD9	8	25296836	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	483065	25296836	121067186	401	3567											
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	25341585	25341585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgtttgatgaatctttGccagcaaatactccattgcg	9	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	25341585	G	A	25341585	2	1	43	1	0	0	0	0	0	0	0	1	3115	1310	46	4		4	CDCA2	8	25341585	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	44749	25341585	121022437	402	3568											
DPYSL2	1808	broad.mit.edu;hgsc.bcm.edu	37	chr8	26513189	26513189	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtatcgtggcgcccccCggtggccgtgccaacatcac	12	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	26513189	C	T	26513189	2	4	43	1	0	0	0	0	0	0	0	1	4784	639	23	1		1	DPYSL2	8	26513189	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1171604	26513189	119850833	403	3569											
PBK	55872	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	27679912	27679912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatcttggctggctttatatCgttcttctattaagtcattt	7	7	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	27679912	C	T	27679912	3	4	43	1	0	0	0	0	1	0	0	0	11567	884	31	1	595	1	PBK	8	27679912	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1166723	27679912	118684110	404	3570											
GTF2E2	2961	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	30436512	30436512	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttatgagtcttaaagcgtcGctttttctgtgaagcaggct	11	7	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	30436512	G	A	30436512	4	1	43	1	0	0	0	0	0	1	0	0	6915	1095	38	1	77	1	GTF2E2	8	30436512	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2756600	30436512	115927510	405	3571											
WRN	7486	broad.mit.edu	37	chr8	30924630	30924630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgaaagacaagtctatcCgctgtagcaattggagtaaa	9	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30924630	C	T	30924630	3	4	43	1	0	0	0	0	1	0	0	0	17508	652	23	1	604	1	WRN	8	30924630	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	488118	30924630	115439392	406	3572											
BRF2	55290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	37706116	37706116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaaggtcaattctcacctCgttgctggctgcgactaact	8	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	37706116	C	T	37706116	3	4	43	1	0	0	0	0	1	0	0	0	1519	884	31	1	1059	1	BRF2	8	37706116	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6781486	37706116	108657906	407	3573											
AP3M2	10947	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	42015607	42015607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagcctcctaccatccttcGaacggttgtcaacaccatca	5	15	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42015607	G	A	42015607	3	1	43	1	0	0	0	0	1	0	0	0	750	1058	37	1	428	1	AP3M2	8	42015607	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4309491	42015607	104348415	408	3574											
IKBKB	3551	broad.mit.edu;hgsc.bcm.edu	37	chr8	42179650	42179650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcttcgagaagaaagtgcGagtgatctatacgcagctca	12	8	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42179650	G	A	42179650	3	1	43	1	0	0	0	0	1	0	0	0	7672	1058	37	1	1883	1	IKBKB	8	42179650	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	164043	42179650	104184372	409	3575											
SLC20A2	6575	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	42296994	42296994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcccgagggtggctgcccGcagaagtgccttccgaggtc	15	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42296994	G	A	42296994	3	1	43	1	0	0	0	0	1	0	0	0	14537	1087	38	1	1070	1	SLC20A2	8	42296994	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	117344	42296994	104067028	410	3576											
HOOK3	84376	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	42873507	42873507	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaatgttgcagggaatgAccctgcataaaaaggcagct	10	7	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	42873507	A	G	42873507	3	3	43	1	0	0	0	0	1	0	0	0	7342	275	10	2	2109	2	HOOK3	8	42873507	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	576513	42873507	103490515	411	3577											
HGSNAT	138050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	43052122	43052122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actattgtattacaaggctcGgaccaaagacatcctgattc	7	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	43052122	G	A	43052122	3	1	43	1	0	0	0	0	1	0	0	0	7146	1116	39	1	1554	1	HGSNAT	8	43052122	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	178615	43052122	103311900	412	3578											
OPRK1	4986	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	54147439	54147439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggaagtccaaagccttcaCggggtggcacacggcaatgt	14	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	54147439	C	T	54147439	3	4	43	1	0	0	0	0	1	0	0	0	10964	536	19	1	660	1	OPRK1	8	54147439	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11095317	54147439	92216583	413	3579											
NSMAF	8439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	59499082	59499082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctggtgcattaaggtggccGttgtgaggtcccaaatattc	12	8	1	1	rs138530641	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	59499082	G	A	59499082	3	1	43	1	0	0	0	0	1	0	0	0	10753	1145	40	1	388	1	NSMAF	8	59499082	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5351643	59499082	86864940	414	3580											
CHD7	55636	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	61766042	61766042	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgacgataagtcggaagAgtcttcccagcccgaaggta	13	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	61766042	A	G	61766042	3	3	43	1	0	0	0	0	1	0	0	0	3359	304	11	2	6876	2	CHD7	8	61766042	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2266960	61766042	84597980	415	3581											
C8orf34	116328	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	69380981	69380981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggactaaaccacaaagccGtgattttgatgaattgaatc	9	7	0	4	rs142064557	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	69380981	G	A	69380981	3	1	43	1	0	0	0	0	1	0	0	0	2446	1145	40	1	339	1	C8orf34	8	69380981	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7614939	69380981	76983041	416	3582											
EYA1	2138	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	72129051	72129051	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cataagttagcactggttgcTgcagcaggaaagccatctgt	11	9	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	72129051	T	C	72129051	2	2	43	1	0	0	0	0	0	0	0	1	5368	1567	55	2		2	EYA1	8	72129051	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2748070	72129051	74234971	417	3583											
ZFHX4	79776	broad.mit.edu	37	chr8	77763332	77763332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accgctctctgtttctgaccGtcatgtctacaagtatcgct	7	13	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	77763332	G	A	77763332	3	1	43	1	0	0	0	0	1	0	0	0	17740	1145	40	1	4209	1	ZFHX4	8	77763332	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5634281	77763332	68600690	418	3584											
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	77775707	77775707	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tacagaatgcaattgctggtGacccagcttcctttataggc	9	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	77775707	G	A	77775707	3	1	43	1	0	0	0	0	1	0	0	0	17740	1290	45	4	9795	4	ZFHX4	8	77775707	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12375	77775707	68588315	419	3585											
IMPA1	3612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	82571603	82571603	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taattaatcttcgtcgtctcGttgcaaaggtataacctgaa	7	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	82571603	G	A	82571603	4	1	43	1	0	0	0	0	0	1	0	0	7783	1153	40	1	20	1	IMPA1	8	82571603	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4795896	82571603	63792419	420	3586											
DECR1	1666	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	91029431	91029431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttcacctcttcaaaaagCgatgctaccacctaatagtt	4	12	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	91029431	C	T	91029431	3	4	43	1	0	0	0	0	1	0	0	0	4414	768	27	1	155	1	DECR1	8	91029431	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8457828	91029431	55334591	421	3587											
KIAA1429	25962	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	95541376	95541376	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aatactgtctactgttcgtcGatcatcctcatcctcatcct	4	14	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	95541376	G	A	95541376	4	1	43	1	0	0	0	0	0	1	0	0	8292	1066	37	1	4762	1	KIAA1429	8	95541376	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4511945	95541376	50822646	422	3588											
MATN2	4147	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	98943420	98943420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgtgctgtcaagaggatgCggcatctgtccacgggcacc	14	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	98943420	C	T	98943420	3	4	43	1	0	0	0	0	1	0	0	0	9411	759	27	1	388	1	MATN2	8	98943420	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3402044	98943420	47420602	423	3589											
AZIN1	51582	broad.mit.edu;mdanderson.org	37	chr8	103848546	103848546	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagagatgcctacagttcttCagggtagtgccaaacttcat	9	9	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	103848546	C	T	103848546	2	4	43	1	0	0	0	0	0	0	0	1	1246	813	29	4		4	AZIN1	8	103848546	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4905126	103848546	42515476	424	3590											
SYBU	55638	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110587782	110587782	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaccagattctgtggtggTggctgtcactatctcatcga	11	10	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	110587782	T	C	110587782	3	2	43	1	0	0	0	0	1	0	0	0	15527	1696	59	2	650	2	SYBU	8	110587782	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	6739236	110587782	35776240	425	3591											
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	113657336	113657336	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attatttcatgaggcaaattAccttttccatgggttacatc	6	8	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	113657336	A	G	113657336	5	3	43	1	0	0	0	0	0	0	1	0	3977	405	14	2	8019	2	CSMD3	8	113657336	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3069554	113657336	32706686	426	3592											
TRPS1	7227	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	116430676	116430676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaacaccggagcctctaCgcctctgaaacaggggaaaa	9	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	116430676	C	T	116430676	3	4	43	1	0	0	0	0	1	0	0	0	16698	536	19	1	1187	1	TRPS1	8	116430676	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2773340	116430676	29933346	427	3593											
ENPP2	5168	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	120606001	120606001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaagctttaccatggtctcCgacaaagatgacgttgacac	8	11	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	120606001	C	T	120606001	3	4	43	1	0	0	0	0	1	0	0	0	5169	661	23	1	1654	1	ENPP2	8	120606001	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4175325	120606001	25758021	428	3594											
ENPP2	5168	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	120628543	120628543	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatgattaaatttctctcGccctcgcagatgaaaagtgg	8	9	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	120628543	G	A	120628543	4	1	43	1	0	0	0	0	0	1	0	0	5169	1095	38	1	2163	1	ENPP2	8	120628543	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	22542	120628543	25735479	429	3595											
ZHX2	22882	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr8	123964437	123964437	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgagatcctctcgagactCggcggggtggagctcctcca	14	13	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	123964437	C	T	123964437	2	4	43	1	0	0	0	0	0	0	0	1	17781	871	31	1		1	ZHX2	8	123964437	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3335894	123964437	22399585	430	3596											
TG	7038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	133953625	133953625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacaacacttcagaaaCgctttgaacccactggtttc	5	15	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	133953625	C	T	133953625	3	4	43	1	0	0	0	0	1	0	0	0	15917	536	19	1	5173	1	TG	8	133953625	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9989188	133953625	12410397	431	3597											
ZFAT	57623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	135615108	135615108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctcaggtgggcctgcagcGagtgcttgaacttgaagacc	13	11	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	135615108	G	A	135615108	3	1	43	1	0	0	0	0	1	0	0	0	17737	1059	37	1	2921	1	ZFAT	8	135615108	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1661483	135615108	10748914	432	3598											
DENND3	22898	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	142178160	142178160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattcccgaaatccactttcCgctggagagcaagtgcgtgc	11	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	142178160	C	T	142178160	3	4	43	1	0	0	0	0	1	0	0	0	4469	652	23	1	1617	1	DENND3	8	142178160	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6563052	142178160	4185862	433	3599											
BAI1	575	broad.mit.edu	37	chr8	143566068	143566068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggaggactttgtggacGtcatcggcttccgcatgaag	15	8	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	143566068	G	A	143566068	3	1	43	1	0	0	0	0	1	0	0	0	1302	1145	40	1	2297	1	BAI1	8	143566068	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1387908	143566068	2797954	434	3600											
JRK	8629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	143746611	143746611	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacggctttgctgtcttcCggcaaacctatggttctgaa	10	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	143746611	C	T	143746611	2	4	43	1	0	0	0	0	0	0	0	1	8025	639	23	1		1	JRK	8	143746611	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	180543	143746611	2617411	435	3601											
MAPK15	225689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	144800421	144800421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcatcagcctccttgacGtgatccgggcagagaacgac	10	13	2	3	rs140275267	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	144800421	G	A	144800421	3	1	43	1	0	0	0	0	1	0	0	0	9354	1145	40	1	249	1	MAPK15	8	144800421	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1053810	144800421	1563601	436	3602											
EPPK1	83481	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	144942815	144942815	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcctgctgatcagctgcGccctgaacaggtccctggct	10	15	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	144942815	G	A	144942815	3	1	43	1	0	0	0	0	1	0	0	0	5229	1087	38	1	2659	1	EPPK1	8	144942815	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	142394	144942815	1421207	437	3603											
PLEC	5339	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	144995547	144995547	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcacggggtcgataacGccgcccgtggcgatctgggc	16	13	1	0	rs186703073	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	144995547	G	A	144995547	2	1	43	1	0	0	0	0	0	0	0	1	12132	1074	38	1		1	PLEC	8	144995547	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	52732	144995547	1368475	438	3604											
SPATC1	375686	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggtgtcttcctgccccCgtccccagcagtggcaaacg	10	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	145094825	C	T	145094825	3	4	43	1	0	0	0	0	1	0	0	0	15117	652	23	1	233	1	SPATC1	8	145094825	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	99278	145094825	1269197	439	3605											
GPAA1	8733	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	145138659	145138659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggcatcctgcgggccccgCgtgctgccagcaccgagtcg	14	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	145138659	C	T	145138659	3	4	43	1	0	0	0	0	1	0	0	0	6644	768	27	1	423	1	GPAA1	8	145138659	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43834	145138659	1225363	440	3606											
GPAA1	8733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr8	145139221	145139221	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagggggcctgttgtgcacGcttcagggcaaggtggggct	18	8	1	0	rs189367473	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	145139221	G	A	145139221	2	1	43	1	0	0	0	0	0	0	0	1	6644	1074	38	1		1	GPAA1	8	145139221	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	562	145139221	1224801	441	3607											
LRRC14	9684	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	145746758	145746758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaggagaagtttgcccgcGtagaagctgagttgcaccag	14	8	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	145746758	G	A	145746758	3	1	43	1	0	0	0	0	1	0	0	0	9040	1145	40	1	1388	1	LRRC14	8	145746758	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	607537	145746758	617264	442	3608											
RPL8	6132	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	146015277	146015277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactttgcggccagcagggGcatctctgcggatggtggag	16	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	146015277	G	A	146015277	3	1	43	1	0	0	0	0	1	0	0	0	13697	1203	42	3	91	3	RPL8	8	146015277	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	268519	146015277	348745	443	3609											
SMARCA2	6595	broad.mit.edu;mdanderson.org	37	chr9	2191375	2191375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagccaaacctgtagtgagCgattttgacagcgatgagga	12	7	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2191375	C	T	2191375	2	4	43	1	0	0	0	0	0	0	0	1	14867	767	27	1		1	SMARCA2	9	2191375	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10		2191375	139022056	444	3610											
PTPRD	5789	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	8485823	8485823	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tatggcccgggccctttgctCgtatgagcacgtacttttac	10	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8485823	C	T	8485823	2	4	43	1	0	0	0	0	0	0	0	1	12891	871	31	1		1	PTPRD	9	8485823	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	6294448	8485823	132727608	445	3611											
PTPRD	5789	broad.mit.edu	37	chr9	8507359	8507359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttggcaatggtatctgaaCgtggaggtgtccaagagagc	15	6	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8507359	C	T	8507359	3	4	43	1	0	0	0	0	1	0	0	0	12891	536	19	1	4287	1	PTPRD	9	8507359	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	21536	8507359	132706072	446	3612											
BNC2	54796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	16552695	16552695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctgctgatgtcaaacaCgacgttggactgcacaatct	10	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	16552695	C	T	16552695	3	4	43	1	0	0	0	0	1	0	0	0	1480	536	19	1	2809	1	BNC2	9	16552695	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8045336	16552695	124660736	447	3613											
PLIN2	123	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	19121114	19121114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccccagtcacagtagtcGtcacagcatcttttgcccca	8	15	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	19121114	G	A	19121114	3	1	43	1	0	0	0	0	1	0	0	0	12170	1145	40	1	970	1	PLIN2	9	19121114	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2568419	19121114	122092317	448	3614											
LINGO2	158038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	27949033	27949033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaatgtgaagcagcccataGctgtagacaccagtattgtt	11	8	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	27949033	G	T	27949033	3	4	43	1	0	0	0	0	1	0	0	0	8879	971	34	5	187	5	LINGO2	9	27949033	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8827919	27949033	113264398	449	3615											
CCL27	10850	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	34661943	34661943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttggctattgggggcttcAgcccattttccttagcatcc	9	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	34661943	A	G	34661943	3	3	43	1	0	0	0	0	1	0	0	0	2926	201	7	2	5	2	CCL27	9	34661943	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	6712910	34661943	106551488	450	3616											
PIGO	84720	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	35095327	35095327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggctgggcgaagtcaaatCgcagagcatctatcagcacc	13	11	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	35095327	C	T	35095327	3	4	43	1	0	0	0	0	1	0	0	0	11974	884	31	1	3073	1	PIGO	9	35095327	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	433384	35095327	106118104	451	3617											
UNC13B	10497	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	35396917	35396917	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcgtggggccctggaaCgagataagaaggatggagta	16	7	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	35396917	C	T	35396917	4	4	43	1	0	0	0	0	0	1	0	0	17091	528	19	1	3374	1	UNC13B	9	35396917	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	301590	35396917	105816514	452	3618											
C9orf100	84904	broad.mit.edu;hgsc.bcm.edu	37	chr9	35664388	35664389	+	Frame_Shift_Del	DEL	CT	CT	-													cctgcagggtggtctgggacCtctctgagttggcagcaaat					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	35664389	CT	-	35664388	7	5	43	1	0	1	0	1	0	0	0	0	2469	681	24	0	700	0	C9orf100	9	35664388	Frame_Shift_Del	DEL	CT	TCGA-KN-8428-01A-11D-2310-10	267471	35664388	105549043	453	3619											
CREB3	10488	broad.mit.edu	37	chr9	35736467	35736467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctgcagtcagaagtgcCgaaagacagcacacaccagt	10	13	1	2	rs190901541		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	35736467	C	T	35736467	3	4	43	1	0	0	0	0	1	0	0	0	3884	652	23	1	894	1	CREB3	9	35736467	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	72079	35736467	105476964	454	3620											
CNTNAP3	79937	broad.mit.edu	37	chr9	39177437	39177437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gacggaatgccagtgctggtCgtccagcaggctgcccaggg	16	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	39177437	C	T	39177437	3	4	43	1	0	0	0	0	1	0	0	0	3677	884	31	1	3137	1	CNTNAP3	9	39177437	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3440970	39177437	102035994	455	3621											
FXN	2395	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	71668178	71668178	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgatgtctcctttggggTacctcttgacttcttttatt	7	9	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	71668178	T	C	71668178	5	2	43	1	0	0	0	0	0	0	1	0	6166	1652	57	2	396	2	FXN	9	71668178	Splice_Site	SNP	T	TCGA-KN-8428-01A-11D-2310-10	32490741	71668178	69545253	456	3622											
PCSK5	5125	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	78641898	78641898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctctggcaagttgcgacGtgaatgggaatgacttggac	14	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	78641898	G	A	78641898	3	1	43	1	0	0	0	0	1	0	0	0	11682	1145	40	1	595	1	PCSK5	9	78641898	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6973720	78641898	62571533	457	3623											
PRUNE2	158471	broad.mit.edu	37	chr9	79322501	79322501	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgatacccagaactgggTtgctggccccaggaggacag	13	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	79322501	T	C	79322501	2	2	43	1	0	0	0	0	0	0	0	1	12730	1722	60	2		2	PRUNE2	9	79322501	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	680603	79322501	61890930	458	3624											
C9orf64	84267	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	86571236	86571236	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttgaccgcggcctcgtcGgccgccctggggttcagctc	14	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	86571236	G	A	86571236	2	1	43	1	0	0	0	0	0	0	0	1	2514	1103	39	1		1	C9orf64	9	86571236	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7248735	86571236	54642195	459	3625											
SLC28A3	64078	broad.mit.edu	37	chr9	86895780	86895780	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacagagagcgtaagtggcGattatctcagaacgaatctg	11	9	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	86895780	G	A	86895780	2	1	43	1	0	0	0	0	0	0	0	1	14631	1048	37	1		1	SLC28A3	9	86895780	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	324544	86895780	54317651	460	3626											
SHC3	53358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	91692802	91692802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accaggcacagcttcacagaCgcggctgatggcttccctta	10	14	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	91692802	C	T	91692802	3	4	43	1	0	0	0	0	1	0	0	0	14370	536	19	1	1262	1	SHC3	9	91692802	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4797022	91692802	49520629	461	3627											
FAM120A	23196	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr9	96326776	96326776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtacagacagcgcttgccGcagagaagctgctctggagg	14	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	96326776	G	A	96326776	3	1	43	1	0	0	0	0	1	0	0	0	5458	1087	38	1	3381	1	FAM120A	9	96326776	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4633974	96326776	44886655	462	3628											
TEX10	54881	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	103064527	103064527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgcccagtgatatacacGttgaagcagtaatgtaagtc	11	7	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	103064527	G	A	103064527	2	1	43	1	0	0	0	0	0	0	0	1	15876	1136	40	1		1	TEX10	9	103064527	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6737751	103064527	38148904	463	3629											
MURC	347273	bcgsc.ca	37	chr9	103348063	103348063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaggagaagtttcggtgtcCgacatccctgtctgttgtta	11	9	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	103348063	C	T	103348063	3	4	43	1	0	0	0	0	1	0	0	0	10065	652	23	1	431	1	MURC	9	103348063	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	283536	103348063	37865368	464	3630											
MRPL50	54534	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	104153053	104153053	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtggtgtgtatgctcGgcttcgtaaaggtggacaca	14	7	1	0	rs150313404		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	104153053	G	A	104153053	4	1	43	1	0	0	0	0	0	1	0	0	9892	1124	39	1	308	1	MRPL50	9	104153053	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	804990	104153053	37060378	465	3631											
RGS3	5998	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	116353631	116353631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgagcggggctgacaccGttggggatgatgacgaagcc	17	8	0	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	116353631	G	A	116353631	3	1	43	1	0	0	0	0	1	0	0	0	13399	1145	40	1	3369	1	RGS3	9	116353631	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12200578	116353631	24859800	466	3632											
ZNF618	114991	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	116812166	116812166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgccgtcgagaaccccGcagctcaggaagatgatcgg	13	13	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	116812166	G	A	116812166	3	1	43	1	0	0	0	0	1	0	0	0	18147	1087	38	1	2359	1	ZNF618	9	116812166	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	458535	116812166	24401265	467	3633											
TNC	3371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	117797539	117797539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaccggtgactgatgcccGggggggtcgccaggtaagga	18	9	0	2	rs148674204	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	117797539	G	A	117797539	3	1	43	1	0	0	0	0	1	0	0	0	16374	1115	39	1	902	1	TNC	9	117797539	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	985373	117797539	23415892	468	3634											
DBC1	1620	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	122001025	122001025	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacagcccagaggcccagtgCgtgtctctgtgacctgcagt	12	13	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	122001025	C	T	122001025	3	4	43	1	0	0	0	0	1	0	0	0	4279	768	27	1	1708	1	DBC1	9	122001025	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4203486	122001025	19212406	469	3635											
NEK6	10783	broad.mit.edu;ucsc.edu	37	chr9	127064218	127064218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgttttctgttgcagttcGtgccctcgtgaggctggcat	13	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	127064218	G	A	127064218	3	1	43	1	0	0	0	0	1	0	0	0	10407	1145	40	1	162	1	NEK6	9	127064218	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5063193	127064218	14149213	470	3636											
RABEPK	10244	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	127975736	127975736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccctcctgcacacctgaccGtatctgggtatttggaggtg	11	12	1	1	rs147509125		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	127975736	G	A	127975736	3	1	43	1	0	0	0	0	1	0	0	0	13055	1145	40	1	309	1	RABEPK	9	127975736	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	911518	127975736	13237695	471	3637											
ZBTB34	403341	broad.mit.edu;mdanderson.org	37	chr9	129641862	129641862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccagctccccatatttcCgggaccattcagcgttaagt	8	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	129641862	C	T	129641862	3	4	43	1	0	0	0	0	1	0	0	0	17642	643	23	1	174	1	ZBTB34	9	129641862	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1666126	129641862	11571569	472	3638											
ZBTB34	403341	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	129642636	129642636	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccatgctgagctgtttcCgaggagggcgtgcccgccag	16	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	129642636	C	T	129642636	4	4	43	1	0	0	0	0	0	1	0	0	17642	644	23	1	948	1	ZBTB34	9	129642636	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	774	129642636	11570795	473	3639											
ANGPTL2	23452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	129870870	129870870	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgtcctgggactcgccCgcccgcttgtacctgtttag	10	15	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	129870870	C	T	129870870	2	4	43	1	0	0	0	0	0	0	0	1	614	639	23	1		1	ANGPTL2	9	129870870	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	228234	129870870	11342561	474	3640											
SLC2A8	29988	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	130167788	130167788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtggcgacaggcatctgcGtcctcaccaactggctcatg	12	14	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	130167788	G	A	130167788	3	1	43	1	0	0	0	0	1	0	0	0	14649	1145	40	1	1274	1	SLC2A8	9	130167788	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	296918	130167788	11045643	475	3641											
FPGS	2356	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	130569287	130569287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggttcgggagcggatccGcatcaatgggcagcccatca	14	12	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	130569287	G	A	130569287	3	1	43	1	0	0	0	0	1	0	0	0	6087	1087	38	1	440	1	FPGS	9	130569287	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	401499	130569287	10644144	476	3642											
PIP5KL1	138429	hgsc.bcm.edu;ucsc.edu	37	chr9	130684387	130684387	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgggctctgtgccccttgCacagacctgggggccgacag	14	15	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	130684387	C	T	130684387	2	4	43	1	0	0	0	0	0	0	0	1	12022	697	25	4		4	PIP5KL1	9	130684387	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	115100	130684387	10529044	477	3643											
GOLGA2	2801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	131023004	131023004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaccctccagctccttccGcaggtgctcagcctccgctt	8	19	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	131023004	G	A	131023004	3	1	43	1	0	0	0	0	1	0	0	0	6608	1086	38	1	1631	1	GOLGA2	9	131023004	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	338617	131023004	10190427	478	3644											
SPTAN1	6709	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	131329101	131329101	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctagaccgataccacCgcttcaaggaactctcaacc	7	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	131329101	C	T	131329101	3	4	43	1	0	0	0	0	1	0	0	0	15217	652	23	1	84	1	SPTAN1	9	131329101	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	306097	131329101	9884330	479	3645											
DOLPP1	57171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	131849014	131849014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccgagttcttcctaatccGagacacaagcctcattccca	5	16	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	131849014	G	A	131849014	3	1	43	1	0	0	0	0	1	0	0	0	4741	1058	37	1	643	1	DOLPP1	9	131849014	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	519913	131849014	9364417	480	3646											
NTNG2	84628	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	135073709	135073709	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacatgtcatcctccagcgcGcaccgcgtgctctgcaccga	10	17	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	135073709	G	A	135073709	2	1	43	1	0	0	0	0	0	0	0	1	10784	1074	38	1		1	NTNG2	9	135073709	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3224695	135073709	6139722	481	3647											
GTF3C4	9329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	135553528	135553528	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggtctcccatgggttgCgatgctaatggcaggtgcct	14	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	135553528	C	T	135553528	2	4	43	1	0	0	0	0	0	0	0	1	6933	776	27	1		1	GTF3C4	9	135553528	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	479819	135553528	5659903	482	3648											
GTF3C5	9328	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr9	135919149	135919149	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtacttggctgtgcatacGgaagcaggcggcaagcatac	13	10	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	135919149	G	A	135919149	2	1	43	1	0	0	0	0	0	0	0	1	6934	1103	39	1		1	GTF3C5	9	135919149	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	365621	135919149	5294282	483	3649											
COL5A1	1289	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	137712006	137712006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcggtcctccgggtgaacaGggtgagaagggcgaccgtgg	18	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	137712006	G	T	137712006	3	4	43	1	0	0	0	0	1	0	0	0	3725	991	35	5	4721	5	COL5A1	9	137712006	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1792857	137712006	3501425	484	3650											
ABCA2	20	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	139908708	139908708	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagccagctccctcgtcGccacgggcagagcccacaga	12	16	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	139908708	G	A	139908708	2	1	43	1	0	0	0	0	0	0	0	1	32	1074	38	1		1	ABCA2	9	139908708	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2196702	139908708	1304723	485	3651											
ABCA2	20	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	139915957	139915957	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacagcatcccggtagccctGcagggctcccttctgactct	10	16	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	139915957	G	A	139915957	4	1	43	1	0	0	0	0	0	1	0	0	32	1328	46	4	6694	4	ABCA2	9	139915957	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7249	139915957	1297474	486	3652											
UAP1L1	91373	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	139973538	139973538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtggacaacatcctggtgCggctggcggaccctgtcttc	14	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	139973538	C	T	139973538	3	4	43	1	0	0	0	0	1	0	0	0	16932	759	27	1	795	1	UAP1L1	9	139973538	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	57581	139973538	1239893	487	3653											
ANAPC2	29882	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr9	140074818	140074818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggatgttggcattgatgcGgcgggagtccgccatgtcct	15	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140074818	G	A	140074818	3	1	43	1	0	0	0	0	1	0	0	0	603	1116	39	1	779	1	ANAPC2	9	140074818	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	101280	140074818	1138613	488	3654											
RNF208	727800	broad.mit.edu;bcgsc.ca	37	chr9	140115390	140115390	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccgccgtggcagtggcGgggtatggggtgccccttcc	20	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140115390	G	A	140115390	3	1	43	1	0	0	0	0	1	0	0	0	13570	1116	39	1	514	1	RNF208	9	140115390	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	40572	140115390	1098041	489	3655											
PNPLA7	375775	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	140355132	140355132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctctggaagtctgcgtatGcatccctggggacgtccagc	13	12	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	140355132	G	A	140355132	3	1	43	1	0	0	0	0	1	0	0	0	12250	1319	46	4	137	4	PNPLA7	9	140355132	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	239742	140355132	858299	490	3656											
CACNA1B	774	ucsc.edu;mdanderson.org	37	chr9	140865971	140865971	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctactgggtggtgctgtgCgtggtggccctgaacacact	14	10	1	1	rs78326958	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	140865971	C	T	140865971	2	4	43	1	0	0	0	0	0	0	0	1	2564	776	27	1		1	CACNA1B	9	140865971	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	510839	140865971	347460	491	3657											
CACNA1B	774	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	140941360	140941360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgccttccctcacaggctcCgccgcttctgccactacatc	7	19	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	140941360	C	T	140941360	3	4	43	1	0	0	0	0	1	0	0	0	2564	652	23	1	3504	1	CACNA1B	9	140941360	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	75389	140941360	272071	492	3658											
WDR37	22884	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	1175232	1175232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcacctgtgggtttgaccGgcaagccattggttggaaca	13	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1175232	G	A	1175232	3	1	43	1	0	0	0	0	1	0	0	0	17397	1116	39	1	1483	1	WDR37	10	1175232	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1175232	134359515	493	3659											
GDI2	2665	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	5827121	5827121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaccttgcaaatccttgggGcagttctccaaggccataga	9	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	5827121	G	A	5827121	3	1	43	1	0	0	0	0	1	0	0	0	6377	1203	42	3	658	3	GDI2	10	5827121	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4651889	5827121	129707626	494	3660											
IL2RA	3559	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	6063568	6063568	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagccctgtatccctggacGcactgataataaaccatctg	8	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6063568	G	A	6063568	2	1	43	1	0	0	0	0	0	0	0	1	7747	1079	38	1		1	IL2RA	10	6063568	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	236447	6063568	129471179	495	3661											
RSU1	6251	broad.mit.edu	37	chr10	16858984	16858984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactcacagaggccgttgaCatccagcatgttggagatgc	12	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	16858984	C	T	16858984	3	4	43	1	0	0	0	0	1	0	0	0	13811	478	17	4	768	4	RSU1	10	16858984	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	10795416	16858984	118675763	496	3662											
NEBL	10529	broad.mit.edu	37	chr10	21097515	21097515	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggagatttctgacctgtcGtctccgagacctgtaccgaa	10	12	2	3	rs140245727	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21097515	G	A	21097515	2	1	43	1	0	0	0	0	0	0	0	1	10382	1136	40	1		1	NEBL	10	21097515	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4238531	21097515	114437232	497	3663											
RASSF4	83937	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	45485141	45485141	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagatggccccagtgagttCgcactctacatcgttcacga	10	12	2	2	rs192302639	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	45485141	C	T	45485141	2	4	43	1	0	0	0	0	0	0	0	1	13180	883	31	1		1	RASSF4	10	45485141	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24387626	45485141	90049606	498	3664											
C10orf71	118461	hgsc.bcm.edu;mdanderson.org	37	chr10	50534403	50534403	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acacccctgcccgcgtacccCgccacccagaaggtcctcca	7	22	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	50534403	C	T	50534403	2	4	43	1	0	0	0	0	0	0	0	1	1624	639	23	1		1	C10orf71	10	50534403	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5049262	50534403	85000344	499	3665											
DDX50	79009	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	70695777	70695777	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagggaattacttttaaaCgtgtaggtgttccttctaca	8	7	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	70695777	C	T	70695777	3	4	43	1	0	0	0	0	1	0	0	0	4400	536	19	1	1579	1	DDX50	10	70695777	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	20161374	70695777	64838970	500	3666											
KIAA1274	27143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	72324139	72324139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgaaggcagcgaaagaggCgcaagaaatgcggaggctgc	18	8	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	72324139	C	T	72324139	3	4	43	1	0	0	0	0	1	0	0	0	8281	768	27	1	2352	1	KIAA1274	10	72324139	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1628362	72324139	63210608	501	3667											
CHST3	9469	hgsc.bcm.edu;mdanderson.org	37	chr10	73768163	73768163	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctacaaactggcgcgggaCgccgccgccctcaccaaccg	12	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73768163	C	T	73768163	2	4	43	1	0	0	0	0	0	0	0	1	3434	535	19	1		1	CHST3	10	73768163	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1444024	73768163	61766584	502	3668											
TSPAN14	81619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	82269147	82269147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggtgagggaccggttcCgggagttcttcgagagcaac	16	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	82269147	C	T	82269147	3	4	43	1	0	0	0	0	1	0	0	0	16743	643	23	1	384	1	TSPAN14	10	82269147	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8500984	82269147	53265600	503	3669											
PANK1	53354	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	91371798	91371798	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgatgtccatgccaaaccaTgggaatgctaaaggacagaa	10	10	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	91371798	T	C	91371798	2	2	43	1	0	0	0	0	0	0	0	1	11495	1451	51	4		4	PANK1	10	91371798	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	9102651	91371798	44162949	504	3670											
CPEB3	22849	mdanderson.org	37	chr10	93999850	93999850	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcggcggctgctgaggAggctgatggaaactcaagcc	18	10	1	2	rs3824734	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	93999850	A	G	93999850	2	3	43	1	0	0	0	0	0	0	0	1	3831	291	11	2		2	CPEB3	10	93999850	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2628052	93999850	41534897	505	3671											
MYOF	26509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	95168570	95168570	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaaagggttgtttcctcTcttgattcttgttcggtgtg	10	6	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	95168570	T	G	95168570	2	3	43	1	0	0	0	0	0	0	0	1	10167	1559	54	5		5	MYOF	10	95168570	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1168720	95168570	40366177	506	3672											
PLCE1	51196	broad.mit.edu	37	chr10	96022395	96022395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gattgagagcacatctctggGcatttttggggtgggcatac	14	7	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	96022395	G	A	96022395	3	1	43	1	0	0	0	0	1	0	0	0	12114	1203	42	3	4295	3	PLCE1	10	96022395	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	853825	96022395	39512352	507	3673											
NOC3L	64318	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	96121511	96121511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttagtttcctctgttcttttCggtacttcttgagagtgctt	8	8	3	1	rs77771649	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	96121511	C	T	96121511	3	4	43	1	0	0	0	0	1	0	0	0	10593	884	31	1	2354	1	NOC3L	10	96121511	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	99116	96121511	39413236	508	3674											
HPS1	3257	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr10	100177455	100177455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgacagcctcggttgggcGgttcttgctgtagtagcgca	14	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	100177455	G	A	100177455	3	1	43	1	0	0	0	0	1	0	0	0	7397	1116	39	1	137	1	HPS1	10	100177455	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4055944	100177455	35357292	509	3675											
COX15	1355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	101483798	101483798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcccaggtgggcagcaaggCggtactgactgacccgaggg	16	11	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	101483798	C	T	101483798	3	4	43	1	0	0	0	0	1	0	0	0	3793	768	27	1	657	1	COX15	10	101483798	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1306343	101483798	34050949	510	3676											
DNMBP	23268	broad.mit.edu;ucsc.edu	37	chr10	101716912	101716912	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtgcgccccagcagcttcGgccctgcagccagcctgcag	12	19	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	101716912	G	A	101716912	4	1	43	1	0	0	0	0	0	1	0	0	4711	1124	39	1	4470	1	DNMBP	10	101716912	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	233114	101716912	33817835	511	3677											
SEMA4G	57715	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	102743469	102743469	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccctcctctatgtggccTgtctgcgggaaggcagacga	12	14	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	102743469	T	C	102743469	3	2	43	1	0	0	0	0	1	0	0	0	14133	1580	55	2	2167	2	SEMA4G	10	102743469	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1026557	102743469	32791278	512	3678											
CALHM1	255022	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	105215188	105215188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccttgatccgtgatgccaCgcagcttctccctttcctcc	7	17	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	105215188	C	T	105215188	3	4	43	1	0	0	0	0	1	0	0	0	2607	536	19	1	172	1	CALHM1	10	105215188	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2471719	105215188	30319559	513	3679											
BTBD16	118663	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr10	124057337	124057337	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccatcaagaaattctaCgaggccggctgcaaggtgag	12	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	124057337	C	T	124057337	2	4	43	1	0	0	0	0	0	0	0	1	1549	547	19	1		1	BTBD16	10	124057337	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	18842149	124057337	11477410	514	3680											
PLEKHA1	59338	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	124172505	124172505	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgaatgtgggaaaaagCaagtgtcttacagaactgat	12	4	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	124172505	C	T	124172505	4	4	43	1	0	0	0	0	0	1	0	0	12135	711	25	4	430	4	PLEKHA1	10	124172505	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	115168	124172505	11362242	515	3681											
DOCK1	1793	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	129216676	129216676	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	attgagaccatgcagctgacGaacgacaagatcaacagcat	9	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	129216676	G	A	129216676	2	1	43	1	0	0	0	0	0	0	0	1	4721	1045	37	1		1	DOCK1	10	129216676	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5044171	129216676	6318071	516	3682											
MKI67	4288	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	129901498	129901498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggctctttgtcggtgtgcGtggtctcccctgaggtttgt	14	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	129901498	G	A	129901498	3	1	43	1	0	0	0	0	1	0	0	0	9675	1145	40	1	1176	1	MKI67	10	129901498	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	684822	129901498	5633249	517	3683											
KNDC1	85442	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	134996849	134996849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcctgtcgtgcccacaggCgcacatctactctctggggg	12	15	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	134996849	C	T	134996849	3	4	43	1	0	0	0	0	1	0	0	0	8487	782	27	1	376	1	KNDC1	10	134996849	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5095351	134996849	537898	518	3684											
ANO9	338440	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	428582	428582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgagctgctgaagagcgCggaggccaggacgcggtaga	19	10	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	428582	C	T	428582	3	4	43	1	0	0	0	0	1	0	0	0	704	768	27	1	1314	1	ANO9	11	428582	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		428582	134577934	519	3685											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	1253980	A	G	1253980	3	3	43	1	0	0	0	0	1	0	0	0	10057	275	10	2	2120	2	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	825398	1253980	133752536	520	3686											
TRIM68	55128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	4624492	4624492	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccttccaggtggcagttcGtttcctttcaccaacttcaa	7	13	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	4624492	G	A	4624492	4	1	43	1	0	0	0	0	0	1	0	0	16646	1153	40	1	972	1	TRIM68	11	4624492	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3370512	4624492	130382024	521	3687											
TRIM34	53840	ucsc.edu	37	chr11	5655127	5655127	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaagagaaaacttcctggAaggcaagaggagattctgaa	13	5	1	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	5655127	A	G	5655127	3	3	43	1	0	0	0	0	1	0	0	0	16613	247	9	4	523	4	TRIM34	11	5655127	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1030635	5655127	129351389	522	3688											
DNHD1	144132	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	6555328	6555328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtactgagcaccagctcGtctccctagagcgtcagttc	11	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6555328	G	A	6555328	3	1	43	1	0	0	0	0	1	0	0	0	4705	1145	40	1	2978	1	DNHD1	11	6555328	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	900201	6555328	128451188	523	3689											
TAF10	6881	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	6632970	6632970	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accacgggcttcacgtctccGttggccgcgctcggcagtac	12	16	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6632970	G	A	6632970	2	1	43	1	0	0	0	0	0	0	0	1	15615	1136	40	1		1	TAF10	11	6632970	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	77642	6632970	128373546	524	3690											
TPP1	1200	broad.mit.edu;bcgsc.ca	37	chr11	6638918	6638918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatggcacttctgggctcCggctgccaagagccattttt	11	11	1	2	rs201613668		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	6638918	C	T	6638918	3	4	43	1	0	0	0	0	1	0	0	0	16516	661	23	1	1412	1	TPP1	11	6638918	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5948	6638918	128367598	525	3691											
DCHS1	8642	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	6650025	6650025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactcgaacagtgacatgcGttaactgaggaggtgagccc	12	11	0	3	rs146184962	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6650025	G	A	6650025	3	1	43	1	0	0	0	0	1	0	0	0	4319	1145	40	1	4734	1	DCHS1	11	6650025	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	11107	6650025	128356491	526	3692											
NLRP10	338322	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	7982431	7982431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catccaggatgaacaggagcCgctctggctgcctcagaatc	11	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7982431	C	T	7982431	3	4	43	1	0	0	0	0	1	0	0	0	10551	652	23	1	1243	1	NLRP10	11	7982431	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1332406	7982431	127024085	527	3693											
SBF2	81846	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	9802030	9802030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactctgtccatcctgggCgcagaagttatacacacgtt	10	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	9802030	C	T	9802030	3	4	43	1	0	0	0	0	1	0	0	0	13955	768	27	1	68	1	SBF2	11	9802030	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1819599	9802030	125204486	528	3694											
KCNC1	3746	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	17793281	17793281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcctggagacccacgagCgcttcaaccccatcgtgaac	9	16	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	17793281	C	T	17793281	3	4	43	1	0	0	0	0	1	0	0	0	8075	768	27	1	646	1	KCNC1	11	17793281	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7991251	17793281	117213235	529	3695											
SPTY2D1	144108	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	18636542	18636542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgtaccactgactgtccGcctagagggatttgagtcat	10	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	18636542	G	A	18636542	3	1	43	1	0	0	0	0	1	0	0	0	15226	1086	38	1	794	1	SPTY2D1	11	18636542	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	843261	18636542	116369974	530	3696											
ZDHHC13	54503	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	19170818	19170818	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggagagggattcagcagcatCcacctggcagtattgtttca	12	9	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	19170818	C	A	19170818	2	1	43	1	0	0	0	0	0	0	0	1	17708	845	30	5		5	ZDHHC13	11	19170818	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	534276	19170818	115835698	531	3697											
BDNF	627	mdanderson.org	37	chr11	27681033	27681033	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcattaaaaagacatttaAgtccatttcaaatgcctccc	4	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	27681033	A	G	27681033	1	3	43	0	1	0	0	0	0	0	0	0	1398	87	3	2		2	BDNF	11	27681033	RNA	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8510215	27681033	107325483	532	3698											
KIF18A	81930	broad.mit.edu;mdanderson.org	37	chr11	28110079	28110079	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tataatgcctacctttgaatCtgctaaggcattgatgacat	7	8	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	28110079	C	G	28110079	3	3	43	1	0	0	0	0	1	0	0	0	8341	913	32	5	1855	5	KIF18A	11	28110079	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	429046	28110079	106896437	533	3699											
FBXO3	26273	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	33770354	33770354	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccttgaacttcttccacGtcacccttagcatttgttat	6	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	33770354	G	A	33770354	2	1	43	1	0	0	0	0	0	0	0	1	5788	1136	40	1		1	FBXO3	11	33770354	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5660275	33770354	101236162	534	3700											
ABTB2	25841	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	34192538	34192538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcccacagttgagcatgCggaaacccaggtcctggttg	11	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	34192538	C	T	34192538	3	4	43	1	0	0	0	0	1	0	0	0	103	768	27	1	1651	1	ABTB2	11	34192538	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	422184	34192538	100813978	535	3701											
LRP4	4038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	46911059	46911059	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggtgcgtgcagcctccGttgttgtccccacagcggtt	12	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	46911059	G	A	46911059	2	1	43	1	0	0	0	0	0	0	0	1	9031	1136	40	1		1	LRP4	11	46911059	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12718521	46911059	88095457	536	3702											
GLYATL1	92292	broad.mit.edu;bcgsc.ca	37	chr11	58711065	58711065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctagtatccccaggagCgcgaagtgaacacggaaggt	13	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	58711065	C	T	58711065	3	4	43	1	0	0	0	0	1	0	0	0	6536	768	27	1	80	1	GLYATL1	11	58711065	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11800006	58711065	76295451	537	3703											
MS4A15	219995	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	60535105	60535105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttcatcgagggcggcGtccccttctggggaggagcc	14	13	4	0	rs76307175	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	60535105	G	A	60535105	3	1	43	1	0	0	0	0	1	0	0	0	9937	1145	40	1	331	1	MS4A15	11	60535105	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1824040	60535105	74471411	538	3704											
TMEM109	79073	hgsc.bcm.edu;mdanderson.org	37	chr11	60689599	60689599	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgcgctggcgccagaggCgagcggccaagggggcccgc	19	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	60689599	C	T	60689599	4	4	43	1	0	0	0	0	0	1	0	0	16129	760	27	1	704	1	TMEM109	11	60689599	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	154494	60689599	74316917	539	3705											
VPS37C	55048	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	60899839	60899839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaccgggggtggtggaCggggtggaggggcatcgccg	24	9	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	60899839	C	T	60899839	3	4	43	1	0	0	0	0	1	0	0	0	17313	536	19	1	550	1	VPS37C	11	60899839	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	210240	60899839	74106677	540	3706											
DDB1	1642	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	61081572	61081572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagggcaacttcaagataCgagccgagatgtccgtccag	12	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	61081572	C	T	61081572	3	4	43	1	0	0	0	0	1	0	0	0	4355	536	19	1	1778	1	DDB1	11	61081572	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	181733	61081572	73924944	541	3707											
DAGLA	747	hgsc.bcm.edu	37	chr11	61511437	61511437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcggcgtcactcctgagCggccccccagtgctgcggcc	15	17	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	61511437	C	T	61511437	3	4	43	1	0	0	0	0	1	0	0	0	4258	759	27	1	2679	1	DAGLA	11	61511437	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	429865	61511437	73495079	542	3708											
INCENP	3619	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	61906227	61906227	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggctgagcctgtggcGgcagctgagccagaggtaag	19	8	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	61906227	G	A	61906227	2	1	43	1	0	0	0	0	0	0	0	1	7794	1103	39	1		1	INCENP	11	61906227	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	394790	61906227	73100289	543	3709											
AHNAK	79026	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr11	62286931	62286931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttgatgtcagctttgggGctttttgccccaaatccaaa	9	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	62286931	G	A	62286931	2	1	43	1	0	0	0	0	0	0	0	1	414	1194	42	3		3	AHNAK	11	62286931	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	380704	62286931	72719585	544	3710											
WDR74	54663	broad.mit.edu;mdanderson.org	37	chr11	62601996	62601996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctggatcataaacacGgacctagaggaaggctgaag	14	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	62601996	G	A	62601996	3	1	43	1	0	0	0	0	1	0	0	0	17430	1116	39	1	555	1	WDR74	11	62601996	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	315065	62601996	72404520	545	3711											
CCDC88B	283234	broad.mit.edu	37	chr11	64120286	64120286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctggcagagcgtgaaCgcctgatgcaagatgggcat	14	11	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	64120286	C	T	64120286	3	4	43	1	0	0	0	0	1	0	0	0	2891	536	19	1	3505	1	CCDC88B	11	64120286	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1518290	64120286	70886230	546	3712											
ATG2A	23130	broad.mit.edu;bcgsc.ca	37	chr11	64665396	64665396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	accagtggtctctacgccttCggcctgcccttccagggggc	12	16	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	64665396	C	T	64665396	3	4	43	1	0	0	0	0	1	0	0	0	1097	893	31	1	935	1	ATG2A	11	64665396	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	545110	64665396	70341120	547	3713											
TSGA10IP	254187	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	65721060	65721060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgctgcaggcctgggagCggcagcggcaggaggagcgg	21	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	65721060	C	T	65721060	3	4	43	1	0	0	0	0	1	0	0	0	16723	759	27	1	1192	1	TSGA10IP	11	65721060	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1055664	65721060	69285456	548	3714											
SART1	9092	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	65744159	65744159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaggagcgctcagccaaCggtggctccgaatctgacgg	15	11	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	65744159	C	T	65744159	2	4	43	1	0	0	0	0	0	0	0	1	13942	535	19	1		1	SART1	11	65744159	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	23099	65744159	69262357	549	3715											
PACS1	55690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	65978707	65978707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctataagaccttggccGtgggactcatcaacatggca	12	10	2	1	rs142653069	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	65978707	G	A	65978707	3	1	43	1	0	0	0	0	1	0	0	0	11451	1145	40	1	651	1	PACS1	11	65978707	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	234548	65978707	69027809	550	3716											
RAB1B	81876	broad.mit.edu;hgsc.bcm.edu	37	chr11	66039636	66039636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaactttcaggatgacacGtacacagagagctacatcag	9	10	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	66039636	G	A	66039636	2	1	43	1	0	0	0	0	0	0	0	1	12998	1132	40	1		1	RAB1B	11	66039636	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	60929	66039636	68966880	551	3717											
RIN1	9610	broad.mit.edu;mdanderson.org	37	chr11	66101541	66101541	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcaggctcaggtgggacccGaaggctccggggccctgggc	19	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	66101541	G	A	66101541	2	1	43	1	0	0	0	0	0	0	0	1	13466	1049	37	1		1	RIN1	11	66101541	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	61905	66101541	68904975	552	3718											
PITPNM1	9600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	67261522	67261522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgcccgacagcggctgcGtcatgatgtagacatccacc	10	14	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	67261522	G	A	67261522	3	1	43	1	0	0	0	0	1	0	0	0	12030	1145	40	1	875	1	PITPNM1	11	67261522	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1159981	67261522	67744994	553	3719											
SUV420H1	51111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	67925896	67925896	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaaatctggtaccgcgtcGtcttttccaggagaatcgtg	10	10	3	1	rs149239650	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	67925896	G	A	67925896	2	1	43	1	0	0	0	0	0	0	0	1	15514	1136	40	1		1	SUV420H1	11	67925896	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	664374	67925896	67080620	554	3720											
CPT1A	1374	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	68530138	68530138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgcacgaagtcgcatgacTcagtggtgcaggagcgcacg	14	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	68530138	T	C	68530138	3	2	43	1	0	0	0	0	1	0	0	0	3860	1551	54	2	549	2	CPT1A	11	68530138	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	604242	68530138	66476378	555	3721											
ARAP1	116985	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	72404807	72404807	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtccgtgcccagcccGtgcaggatgggcagcacctt	14	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	72404807	G	A	72404807	2	1	43	1	0	0	0	0	0	0	0	1	840	1136	40	1		1	ARAP1	11	72404807	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3874669	72404807	62601709	556	3722											
UCP2	7351	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	73689005	73689005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggcaaagctcatttggCgctgcaggccggcaaccagc	13	13	1	1	rs145061662		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73689005	C	T	73689005	3	4	43	1	0	0	0	0	1	0	0	0	17037	768	27	1	686	1	UCP2	11	73689005	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1284198	73689005	61317511	557	3723											
P4HA3	283208	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr11	73988139	73988139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgtgagggcagcaatgCggtggttgagggtcaccagt	18	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73988139	C	T	73988139	3	4	43	1	0	0	0	0	1	0	0	0	11437	768	27	1	428	1	P4HA3	11	73988139	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	299134	73988139	61018377	558	3724											
ARRB1	408	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	74988453	74988453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgttggtgttgttggtgaCgtggacgttgacgctgatgg	17	5	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	74988453	C	T	74988453	3	4	43	1	0	0	0	0	1	0	0	0	984	536	19	1	630	1	ARRB1	11	74988453	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1000314	74988453	60018063	559	3725											
TSKU	25987	broad.mit.edu;mdanderson.org	37	chr11	76506753	76506753	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caatgcgaggtggagaccttCggccttttcgacagcttcag	12	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	76506753	C	T	76506753	2	4	43	1	0	0	0	0	0	0	0	1	16732	883	31	1		1	TSKU	11	76506753	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1518300	76506753	58499763	560	3726											
CHORDC1	26973	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	89935620	89935620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgctttttagctgcagGcagttcaaggcttgcccact	9	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	89935620	G	T	89935620	3	4	43	1	0	0	0	0	1	0	0	0	3394	1203	42	5	50	5	CHORDC1	11	89935620	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13428867	89935620	45070896	561	3727											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	92086239	92086239	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctaaggaaggaaagtggTtgaatgagtacaagattaag	14	2	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	92086239	T	C	92086239	2	2	43	1	0	0	0	0	0	0	0	1	5740	1722	60	2		2	FAT3	11	92086239	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2150619	92086239	42920277	562	3728											
FAT3	120114	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	92577151	92577151	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcacacttacatccgcgtgCgagtcattgaggaaagcacc	9	13	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	92577151	C	T	92577151	4	4	43	1	0	0	0	0	0	1	0	0	5740	760	27	1	10688	1	FAT3	11	92577151	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	490912	92577151	42429365	563	3729											
PIWIL4	143689	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	94353042	94353042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggattcagaagcaacacGtaacgaatggcaagtgccgc	12	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	94353042	G	A	94353042	3	1	43	1	0	0	0	0	1	0	0	0	12040	1145	40	1	2355	1	PIWIL4	11	94353042	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1775891	94353042	40653474	564	3730											
BIRC3	330	broad.mit.edu	37	chr11	102201825	102201825	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaatgggctttagtagaAgcctggtaaaacagacagtt	12	5	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	102201825	A	G	102201825	3	3	43	1	0	0	0	0	1	0	0	0	1441	72	3	2	1195	2	BIRC3	11	102201825	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	7848783	102201825	32804691	565	3731											
MMP1	4312	broad.mit.edu;bcgsc.ca	37	chr11	102667418	102667418	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattgttggtccaccttTcatcttcatcaaaatgagca	6	9	4	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	102667418	T	C	102667418	3	2	43	1	0	0	0	0	1	0	0	0	9725	1783	62	4	835	4	MMP1	11	102667418	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	465593	102667418	32339098	566	3732											
MMP12	4321	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	102738681	102738681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tatgtcatcagcagagaggcGaaatgtgttgatgtcaacat	11	6	3	2	rs183458117		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	102738681	G	A	102738681	3	1	43	1	0	0	0	0	1	0	0	0	9728	1049	37	1	691	1	MMP12	11	102738681	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	71263	102738681	32267835	567	3733											
DYNC2H1	79659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	102987417	102987417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgatcattatcctgagtcacGaatgttgcatctcttagaca	7	9	3	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	102987417	G	A	102987417	3	1	43	1	0	0	0	0	1	0	0	0	4883	1058	37	1	758	1	DYNC2H1	11	102987417	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	248736	102987417	32019099	568	3734											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	108201014	108201014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgaaagaggatcgtaaaCgcttcttatgtaaagcagtt	9	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	108201014	C	T	108201014	3	4	43	1	0	0	0	0	1	0	0	0	1113	536	19	1	7575	1	ATM	11	108201014	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5213597	108201014	26805502	569	3735											
PIH1D2	120379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	111938616	111938616	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cacaccaaaggcattgtgatGattagcgtggatttttcttt	9	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	111938616	G	A	111938616	2	1	43	1	0	0	0	0	0	0	0	1	11987	1280	45	4		4	PIH1D2	11	111938616	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3737602	111938616	23067900	570	3736											
TTC12	54970	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	113187003	113187003	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgataaagagaaagaTttgcagaaatttcttaaaaa	8	3	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	113187003	T	A	113187003	3	1	43	1	0	0	0	0	1	0	0	0	16785	1490	52	5	26	5	TTC12	11	113187003	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1248387	113187003	21819513	571	3737											
C11orf71	54494	broad.mit.edu	37	chr11	114262382	114262382	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatagcttcagggtccaggTagtaactaaaatacacaaaa	8	7	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	114262382	T	C	114262382	3	2	43	1	0	0	0	0	1	0	0	0	1671	1638	57	2	98	2	C11orf71	11	114262382	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1075379	114262382	20744134	572	3738											
CEP164	22897	broad.mit.edu	37	chr11	117262985	117262985	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagtgctgagctggagcGgctctgctcctcattggagg	15	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	117262985	G	A	117262985	3	1	43	1	0	0	0	0	1	0	0	0	3278	1116	39	1	2389	1	CEP164	11	117262985	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3000603	117262985	17743531	573	3739											
MFRP	83552	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	119212383	119212383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcttcctggcagacagagcGgcaagggggcagaacactgc	15	12	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	119212383	G	A	119212383	3	1	43	1	0	0	0	0	1	0	0	0	9603	1116	39	1	128	1	MFRP	11	119212383	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1949398	119212383	15794133	574	3740											
SRPR	6734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	126135007	126135007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgctccacggccccagcacGaaatgtatcacaggcagcaa	9	15	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	126135007	G	A	126135007	3	1	43	1	0	0	0	0	1	0	0	0	15262	1058	37	1	560	1	SRPR	11	126135007	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6922624	126135007	8871509	575	3741											
KCNJ1	3758	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	128709264	128709264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgggacataggatgtcCggacttggcaggtagcactg	14	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	128709264	C	T	128709264	3	4	43	1	0	0	0	0	1	0	0	0	8104	652	23	1	247	1	KCNJ1	11	128709264	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2574257	128709264	6297252	576	3742											
KCNJ5	3762	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	128781258	128781258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagattccaaaacaggcccgCgattatgtccccattgccac	7	14	0	1	rs201886526		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	128781258	C	T	128781258	2	4	43	1	0	0	0	0	0	0	0	1	8115	755	27	1		1	KCNJ5	11	128781258	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	71994	128781258	6225258	577	3743											
IGSF9B	22997	broad.mit.edu;mdanderson.org	37	chr11	133800913	133800913	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggtgctggcagtgatgctCgtgaccacgttggtggcgac	17	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	133800913	C	T	133800913	2	4	43	1	0	0	0	0	0	0	0	1	7667	871	31	1		1	IGSF9B	11	133800913	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5019655	133800913	1205603	578	3744											
JAM3	83700	broad.mit.edu;hgsc.bcm.edu	37	chr11	134009776	134009777	+	Silent	DNP	CC	CC	AA													aggggctgtaaatctcaaatCcagcaatcgaaccccagtgg					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		AA	134009777	CC	AA	134009776	2	1	43	1	0	0	0	0	0	0	0	1	8005	855	30	5		5	JAM3	11	134009776	Silent	DNP	CC	TCGA-KN-8428-01A-11D-2310-10	208863	134009776	996740	579	3745											
NCAPD3	23310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	134027834	134027834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttaccctgactgcacGttttttctgggcttccagaa	9	11	1	2	rs116394634	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	134027834	G	A	134027834	3	1	43	1	0	0	0	0	1	0	0	0	10285	1145	40	1	353	1	NCAPD3	11	134027834	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18058	134027834	978682	580	3746											
KCNA1	3736	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	5020791	5020791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaggaacgagtacttcttcGaccgcaaccggcccagcttc	10	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	5020791	G	T	5020791	3	4	43	1	0	0	0	0	1	0	0	0	8062	1058	37	5	249	5	KCNA1	12	5020791	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		5020791	128831104	581	3747											
VWF	7450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	6078503	6078503	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagacctcctccttcactcGgacacactcattgatgaggc	7	14	2	3	rs61751296	bycluster	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6078503	G	A	6078503	4	1	43	1	0	0	0	0	0	1	0	0	17352	1124	39	1	870	1	VWF	12	6078503	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1057712	6078503	127773392	582	3748											
PLEKHG6	55200	broad.mit.edu;bcgsc.ca	37	chr12	6435610	6435610	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggccgccctacagaagcTgaaggcagaggagtatgttc	13	11	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	6435610	T	C	6435610	3	2	43	1	0	0	0	0	1	0	0	0	12154	1580	55	2	1637	2	PLEKHG6	12	6435610	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	357107	6435610	127416285	583	3749											
SCNN1A	6337	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	6471284	6471284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagcgtgtcctcctccaGggatggcagagtctctggca	13	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	6471284	G	T	6471284	3	4	43	1	0	0	0	0	1	0	0	0	14024	991	35	5	1241	5	SCNN1A	12	6471284	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	35674	6471284	127380611	584	3750											
IFFO1	25900	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	6657689	6657689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaagtcaggctgtcacagtCgtcctcaaaatcatactccc	6	15	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	6657689	C	T	6657689	3	4	43	1	0	0	0	0	1	0	0	0	7571	884	31	1	446	1	IFFO1	12	6657689	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	186405	6657689	127194206	585	3751											
LPCAT3	10162	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	7088722	7088722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggcccagactcaggcGcttgagagcaggaatgatgc	14	9	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	7088722	G	A	7088722	3	1	43	1	0	0	0	0	1	0	0	0	8984	1087	38	1	790	1	LPCAT3	12	7088722	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	431033	7088722	126763173	586	3752											
C1R	715	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	7188165	7188165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcttctcctccatgacccCgaagccactgacatagccca	5	17	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7188165	C	T	7188165	3	4	43	1	0	0	0	0	1	0	0	0	1991	652	23	1	332	1	C1R	12	7188165	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	99443	7188165	126663730	587	3753											
SLC2A3	6515	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr12	8083895	8083895	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttgagagtgccaaaggcAccccgcagggcagtaggcga	16	10	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8083895	A	T	8083895	2	4	43	1	0	0	0	0	0	0	0	1	14643	146	6	5		5	SLC2A3	12	8083895	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	895730	8083895	125768000	588	3754											
AICDA	57379	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	8757413	8757413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccccttaccaaaaggatgCgccgaagctgtctggagaga	12	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8757413	C	T	8757413	3	4	43	1	0	0	0	0	1	0	0	0	422	768	27	1	71	1	AICDA	12	8757413	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	673518	8757413	125094482	589	3755											
RIMKLB	57494	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	8902463	8902463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttatatatttcaggtctgCggatcaatggagagctaatc	9	6	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8902463	C	T	8902463	3	4	43	1	0	0	0	0	1	0	0	0	13461	759	27	1	187	1	RIMKLB	12	8902463	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	145050	8902463	124949432	590	3756											
LOH12CR1	118426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	12618601	12618601	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctccgccgcatacagaTgggcatcgaccagactgtgc	10	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	12618601	T	C	12618601	3	2	43	1	0	0	0	0	1	0	0	0	8963	1464	51	4	496	4	LOH12CR1	12	12618601	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3716138	12618601	121233294	591	3757											
C12orf60	144608	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	14976228	14976228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtattcaaaagtgcccataCgccagtcatcatctctgtgc	7	12	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	14976228	C	T	14976228	3	4	43	1	0	0	0	0	1	0	0	0	1715	536	19	1	361	1	C12orf60	12	14976228	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2357627	14976228	118875667	592	3758											
ITPR2	3709	hgsc.bcm.edu;ucsc.edu	37	chr12	26581017	26581017	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accgagaacaatggagaaagTgtacctgtaaaatgtggaag	12	5	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	26581017	T	C	26581017	2	2	43	1	0	0	0	0	0	0	0	1	7982	1683	59	2		2	ITPR2	12	26581017	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	11604789	26581017	107270878	593	3759											
KLHDC5	57542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	27933686	27933686	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctggcgcaggtgtacggGctgcccgacctgcaggaggc	17	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	27933686	G	A	27933686	2	1	43	1	0	0	0	0	0	0	0	1	8420	1190	42	3		3	KLHDC5	12	27933686	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1352669	27933686	105918209	594	3760											
LRRK2	120892	broad.mit.edu	37	chr12	40689347	40689347	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactaagagatattgatgcCctaagccagaaatgctgtat	9	7	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	40689347	C	A	40689347	2	1	43	1	0	0	0	0	0	0	0	1	9105	610	22	5		5	LRRK2	12	40689347	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12755661	40689347	93162548	595	3761											
TMEM117	84216	broad.mit.edu	37	chr12	44238507	44238507	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctggtctcgcatgattgTggcttacttggtgatcttct	10	10	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	44238507	T	C	44238507	3	2	43	1	0	0	0	0	1	0	0	0	16135	1696	59	2	55	2	TMEM117	12	44238507	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3549160	44238507	89613388	596	3762											
HDAC7	51564	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	48185382	48185382	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattacctgccagcttcccGttgtccagtttgaggcggct	10	14	0	1	rs138164422		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48185382	G	A	48185382	2	1	43	1	0	0	0	0	0	0	0	1	7070	1136	40	1		1	HDAC7	12	48185382	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3946875	48185382	85666513	597	3763											
VDR	7421	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	48272845	48272845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagatccggggcacgttccGgtcaaagtctccagggtcag	13	12	3	1	rs147496897	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48272845	G	A	48272845	3	1	43	1	0	0	0	0	1	0	0	0	17255	1115	39	1	1263	1	VDR	12	48272845	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	87463	48272845	85579050	598	3764											
RND1	27289	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	49251932	49251932	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagacacagcatggatgcCgtccgaaagatgctgtggat	12	9	1	2	rs145827381	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49251932	C	T	49251932	2	4	43	1	0	0	0	0	0	0	0	1	13514	639	23	1		1	RND1	12	49251932	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	979087	49251932	84599963	599	3765											
PRKAG1	5571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	49396782	49396782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tttcatccaccactacaagtCggtgaacctggcacagagca	8	13	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49396782	C	T	49396782	3	4	43	1	0	0	0	0	1	0	0	0	12589	884	31	1	103	1	PRKAG1	12	49396782	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	144850	49396782	84455113	600	3766											
PRPF40B	25766	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	50025707	50025707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggtgcctgtcaccgcagCggtaagcactaggggccagc	15	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	50025707	C	T	50025707	3	4	43	1	0	0	0	0	1	0	0	0	12661	782	27	1	237	1	PRPF40B	12	50025707	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	628925	50025707	83826188	601	3767											
NCKAP5L	57701	broad.mit.edu;hgsc.bcm.edu	37	chr12	50185655	50185655	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacaagaggacagcgagtcGtagagtgagtcactgagaga	14	8	1	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	50185655	G	A	50185655	2	1	43	1	0	0	0	0	0	0	0	1	10303	1140	40	1		1	NCKAP5L	12	50185655	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	159948	50185655	83666240	602	3768											
TMPRSS12	283471	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	51252617	51252617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactaataatatacatggaCgctatcctcataccaagaag	6	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	51252617	C	T	51252617	3	4	43	1	0	0	0	0	1	0	0	0	16348	536	19	1	443	1	TMPRSS12	12	51252617	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1066962	51252617	82599278	603	3769											
GALNT6	11226	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	51752021	51752021	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttccctcagctgcagtcGttccgaaatgtcaccgaagg	10	12	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	51752021	G	A	51752021	4	1	43	1	0	0	0	0	0	1	0	0	6271	1153	40	1	491	1	GALNT6	12	51752021	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	499404	51752021	82099874	604	3770											
NR4A1	3164	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	52449897	52449897	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcggcgaaaccgctgccaGttctgccgcttccagaagtg	13	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52449897	G	A	52449897	2	1	43	1	0	0	0	0	0	0	0	1	10711	1020	36	4		4	NR4A1	12	52449897	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	697876	52449897	81401998	605	3771											
KRT81	3887	broad.mit.edu;hgsc.bcm.edu	37	chr12	52681795	52681795	+	Silent	SNP	G	G	A													cggtaccaggactcggcctcGgcccggctgcgggtgacaat					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52681795	G	A	52681795	2	1	43	1	0	0	0	0	0	0	0	1	8556	1103	39	1		1	KRT81	12	52681795	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	231898	52681795	81170100	606	3772	93	2									
KRT81	3887	hgsc.bcm.edu	37	chr12	52681804	52681804	+	Silent	SNP	G	G	A													gactcggcctcggcccggctGcgggtgacaatgtcgtcata					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52681804	G	A	52681804	2	1	43	1	0	0	0	0	0	0	0	1	8556	1306	46	4		4	KRT81	12	52681804	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9	52681804	81170091	607	3773	93	2									
KRT81	3887	hgsc.bcm.edu	37	chr12	52682214	52682214	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgttggcctccaggtctgaCttgcggaggtaggcgcagtc	15	11	1	1	rs141008448	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	52682214	C	T	52682214	2	4	43	1	0	0	0	0	0	0	0	1	8556	564	20	4		4	KRT81	12	52682214	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	410	52682214	81169681	608	3774											
KRT6C	286887	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr12	52867039	52867039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatctgctcacgctcctcGgcccgcacccgctggatggc	11	17	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52867039	G	A	52867039	2	1	43	1	0	0	0	0	0	0	0	1	8543	1103	39	1		1	KRT6C	12	52867039	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	184825	52867039	80984856	609	3775											
KRT6A	3853	mdanderson.org	37	chr12	52882315	52882315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagcatcagcaatggcGgcctgcaggttggcgcactg	14	12	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52882315	G	A	52882315	2	1	43	1	0	0	0	0	0	0	0	1	8541	1103	39	1		1	KRT6A	12	52882315	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15276	52882315	80969580	610	3776											
KRT5	3852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	52910639	52910639	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggcgttctgcagattggcGcactacagatagaaaggagg	14	7	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52910639	G	A	52910639	2	1	43	1	0	0	0	0	0	0	0	1	8540	1079	38	1		1	KRT5	12	52910639	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	28324	52910639	80941256	611	3777											
KRT2	3849	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr12	53045674	53045674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaccaaatccaccagcggCgccaaagccaccacctcctc	6	21	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	53045674	C	T	53045674	3	4	43	1	0	0	0	0	1	0	0	0	8518	768	27	1	1702	1	KRT2	12	53045674	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	135035	53045674	80806221	612	3778											
ESPL1	9700	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	53663207	53663207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcagaagccctgttggaaCggcgagctgcatttgcagct	15	10	0	1	rs145536592		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	53663207	C	T	53663207	3	4	43	1	0	0	0	0	1	0	0	0	5292	527	19	1	487	1	ESPL1	12	53663207	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	617533	53663207	80188688	613	3779											
ESPL1	9700	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	53685530	53685530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacattcaggccctggcctaCgggctgtgcccaacccagcc	11	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	53685530	C	T	53685530	2	4	43	1	0	0	0	0	0	0	0	1	5292	547	19	1		1	ESPL1	12	53685530	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	22323	53685530	80166365	614	3780											
TARBP2	6895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	53895879	53895879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaccagaatagggaagaCgcctgtgtacgaccttctca	12	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	53895879	C	T	53895879	3	4	43	1	0	0	0	0	1	0	0	0	15657	536	19	1	140	1	TARBP2	12	53895879	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	210349	53895879	79956016	615	3781											
HOXC13	3229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	54333126	54333126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgcagcagaagccttgcGcctaccacccgggcgataaa	10	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54333126	G	A	54333126	3	1	43	1	0	0	0	0	1	0	0	0	7370	1087	38	1	438	1	HOXC13	12	54333126	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	437247	54333126	79518769	616	3782											
ITGA7	3679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	56090778	56090778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgggttcttccaggttacGgctcaggaacgtcacacggg	13	11	3	0	rs146411608	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56090778	G	A	56090778	3	1	43	1	0	0	0	0	1	0	0	0	7942	1116	39	1	1827	1	ITGA7	12	56090778	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1757652	56090778	77761117	617	3783											
GDF11	10220	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	56142583	56142583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaggccggcgtcacatccGtatccgctcactgaagattg	12	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56142583	G	A	56142583	3	1	43	1	0	0	0	0	1	0	0	0	6368	1145	40	1	665	1	GDF11	12	56142583	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	51805	56142583	77709312	618	3784											
ERBB3	2065	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	56478809	56478809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgacaggctatgtcctcGtggccatgaatgaattctct	10	9	1	3	rs77228285		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56478809	G	A	56478809	3	1	43	1	0	0	0	0	1	0	0	0	5247	1145	40	1	275	1	ERBB3	12	56478809	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	336226	56478809	77373086	619	3785											
ANKRD52	283373	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	56648376	56648376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctgacctccgctcccatccGaagcaggtacttcaccactt	6	18	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56648376	G	A	56648376	3	1	43	1	0	0	0	0	1	0	0	0	678	1057	37	1	2639	1	ANKRD52	12	56648376	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	169567	56648376	77203519	620	3786											
NACA	4666	ucsc.edu;mdanderson.org	37	chr12	57114975	57114975	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggctagagctaaggcagcTggggagatgggaggccctat	18	7	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	57114975	T	C	57114975	2	2	43	1	0	0	0	0	0	0	0	1	10211	1567	55	2		2	NACA	12	57114975	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	466599	57114975	76736920	621	3787											
R3HDM2	22864	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	57693939	57693939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcacacactgccaggctaCgcaccaactttagcttggaa	7	15	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	57693939	C	T	57693939	3	4	43	1	0	0	0	0	1	0	0	0	12980	536	19	1	2777	1	R3HDM2	12	57693939	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	578964	57693939	76157956	622	3788											
CYP27B1	1594	ucsc.edu;mdanderson.org	37	chr12	58160795	58160795	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcggacgcgatggaacacTctggaggcgtacttgagggt	16	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	58160795	T	G	58160795	3	3	43	1	0	0	0	0	1	0	0	0	4190	1548	54	5	1532	5	CYP27B1	12	58160795	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	466856	58160795	75691100	623	3789											
DYRK2	8445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	68052183	68052183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcagagagtgggggaacgCgctgaaggggtgtgatgatc	20	5	0	4	rs138614034	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	68052183	C	T	68052183	3	4	43	1	0	0	0	0	1	0	0	0	4893	768	27	1	1506	1	DYRK2	12	68052183	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9891388	68052183	65799712	624	3790											
CPSF6	11052	broad.mit.edu;ucsc.edu	37	chr12	69656278	69656278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagaacgagagaggcaccGggatcgtgaccgagaccgtg	16	10	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	69656278	G	A	69656278	3	1	43	1	0	0	0	0	1	0	0	0	3858	1116	39	1	1629	1	CPSF6	12	69656278	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1604095	69656278	64195617	625	3791											
OSBPL8	114882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	76780412	76780412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcactactttcttcaaacGgaaataaggattttcttcaa	4	8	5	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	76780412	G	A	76780412	3	1	43	1	0	0	0	0	1	0	0	0	11362	1116	39	1	1336	1	OSBPL8	12	76780412	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7124134	76780412	57071483	626	3792											
ZDHHC17	23390	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	77222268	77222268	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggttcttctggttttggaAtgatatcctttggttataaa	10	4	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	77222268	A	G	77222268	3	3	43	1	0	0	0	0	1	0	0	0	17712	101	4	4	1177	4	ZDHHC17	12	77222268	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	441856	77222268	56629627	627	3793											
ATP2B1	490	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	89992451	89992451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacatcatgatgctggctggCgatggagggttgccgcctta	14	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	89992451	C	T	89992451	3	4	43	1	0	0	0	0	1	0	0	0	1143	768	27	1	403	1	ATP2B1	12	89992451	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12770183	89992451	43859444	628	3794											
VEZT	55591	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	95694384	95694384	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccaccatgcaggaacagActtttggtggtgaggaggaa	13	7	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	95694384	A	G	95694384	3	3	43	1	0	0	0	0	1	0	0	0	17262	275	10	2	2321	2	VEZT	12	95694384	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5701933	95694384	38157511	629	3795											
TMPO	7112	bcgsc.ca	37	chr12	98931296	98931296	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagagagaaccactaaaGggcagagcaaagactccagt	12	8	0	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	98931296	G	T	98931296	3	4	43	1	0	0	0	0	1	0	0	0	16341	991	35	5	2147	5	TMPO	12	98931296	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3236912	98931296	34920599	630	3796											
GNPTAB	79158	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	102164267	102164267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtgacaatgaaaatattccGaacccatggtgcatgcctct	9	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	102164267	G	A	102164267	3	1	43	1	0	0	0	0	1	0	0	0	6601	1057	37	1	2792	1	GNPTAB	12	102164267	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3232971	102164267	31687628	631	3797											
GLT8D2	83468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	104391269	104391269	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatagatgactttctcGtgttggtggataagtagagg	12	5	1	3	rs142096211	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	104391269	G	A	104391269	2	1	43	1	0	0	0	0	0	0	0	1	6526	1136	40	1		1	GLT8D2	12	104391269	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2227002	104391269	29460626	632	3798											
ALDH1L2	160428	mdanderson.org	37	chr12	105464485	105464485	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatttagctctgcacccacGgatctgtaggcttctgccac	8	14	3	0	rs74449999	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	105464485	G	A	105464485	2	1	43	1	0	0	0	0	0	0	0	1	495	1103	39	1		1	ALDH1L2	12	105464485	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1073216	105464485	28387410	633	3799											
RFX4	5992	broad.mit.edu	37	chr12	107105260	107105260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggttctcccaaattctgagaCggcaaacatcactaaatcat	6	11	4	1	rs76703390	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	107105260	C	T	107105260	3	4	43	1	0	0	0	0	1	0	0	0	13357	527	19	1	1175	1	RFX4	12	107105260	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1640775	107105260	26746635	634	3800											
SVOP	55530	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	109316565	109316565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcctctacagccttcttccGactggagactggggttggga	13	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	109316565	G	A	109316565	3	1	43	1	0	0	0	0	1	0	0	0	15523	1057	37	1	609	1	SVOP	12	109316565	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2211305	109316565	24535330	635	3801											
MYO1H	283446	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	109882246	109882246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaccccagggggatgccGttttgcagtgtggacacgtg	14	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	109882246	G	A	109882246	3	1	43	1	0	0	0	0	1	0	0	0	10153	1145	40	1	2971	1	MYO1H	12	109882246	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	565681	109882246	23969649	636	3802											
GIT2	9815	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	110390995	110390995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgttgtcttgactctcaaCgctgtgctggttattgatgg	11	8	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	110390995	C	T	110390995	3	4	43	1	0	0	0	0	1	0	0	0	6453	536	19	1	1195	1	GIT2	12	110390995	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	508749	110390995	23460900	637	3803											
OAS1	4938	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	113346548	113346548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccacgctggggcaaccccCgtgcgctcagcttcgtactg	11	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	113346548	C	T	113346548	3	4	43	1	0	0	0	0	1	0	0	0	10878	652	23	1	394	1	OAS1	12	113346548	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2955553	113346548	20505347	638	3804											
RASAL1	8437	ucsc.edu	37	chr12	113554915	113554915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggaaagggcaggaggcGgaaccagcctttaggtggct	17	8	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	113554915	G	A	113554915	3	1	43	1	0	0	0	0	1	0	0	0	13155	1116	39	1	1776	1	RASAL1	12	113554915	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	208367	113554915	20296980	639	3805											
PLBD2	196463	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	113825669	113825669	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gccaatggctcctaccccttCcaggccctgcgtcagcgctc	9	19	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	113825669	C	A	113825669	3	1	43	1	0	0	0	0	1	0	0	0	12106	854	30	5	1602	5	PLBD2	12	113825669	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	270754	113825669	20026226	640	3806											
TAOK3	51347	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	118588925	118588925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aataggttctttattctctcGctgcgttccttctgaagggc	9	10	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	118588925	G	A	118588925	2	1	43	1	0	0	0	0	0	0	0	1	15650	1078	38	1		1	TAOK3	12	118588925	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4763256	118588925	15262970	641	3807											
CCDC60	160777	broad.mit.edu;hgsc.bcm.edu	37	chr12	119968788	119968788	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaacctggacttgcggattCgaccccatgtcctcctgaag	9	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	119968788	C	T	119968788	4	4	43	1	0	0	0	0	0	1	0	0	2858	876	31	1	1521	1	CCDC60	12	119968788	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1379863	119968788	13883107	642	3808											
CIT	11113	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	120150093	120150093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagctagcaagtagagggTtctcccgggccagcaggtgg	18	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	120150093	T	C	120150093	3	2	43	1	0	0	0	0	1	0	0	0	3467	1725	60	2	1513	2	CIT	12	120150093	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	181305	120150093	13701802	643	3809											
RNF10	9921	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	121000814	121000814	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcactggtgttgtggctgctCtggaacaactggtgctgatg	14	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	121000814	C	A	121000814	3	1	43	1	0	0	0	0	1	0	0	0	13517	912	32	5	1225	5	RNF10	12	121000814	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	850721	121000814	12851081	644	3810											
SCARB1	949	ucsc.edu	37	chr12	125263104	125263104	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcaggcccagcggccaggCctggctggctcacggtgtcc	16	15	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	125263104	C	T	125263104	3	4	43	1	0	0	0	0	1	0	0	0	13977	739	26	3	94	3	SCARB1	12	125263104	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4262290	125263104	8588791	645	3811											
GPR133	283383	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	131466490	131466490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagaccaatcccttctgcGtatgggggacaggtcatctc	10	12	4	1	rs145796361	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	131466490	G	A	131466490	2	1	43	1	0	0	0	0	0	0	0	1	6700	1132	40	1		1	GPR133	12	131466490	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6203386	131466490	2385405	646	3812											
EP400	57634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132474512	132474512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacttttattcaccagctcGttagaactgtggtgcgccat	9	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	132474512	G	A	132474512	3	1	43	1	0	0	0	0	1	0	0	0	5188	1145	40	1	2436	1	EP400	12	132474512	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1008022	132474512	1377383	647	3813											
POLE	5426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	133250211	133250211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctccgggtctagctccaCgggatcatagcctagcttgg	12	13	2	0	rs115047349	bycluster;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	133250211	C	T	133250211	3	4	43	1	0	0	0	0	1	0	0	0	12276	536	19	1	5699	1	POLE	12	133250211	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	775699	133250211	601684	648	3814											
MPHOSPH8	54737	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr13	20220830	20220830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagaaaagaatttctgaagCcaaagaagaactaaaggagt	9	4	1	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20220830	C	T	20220830	3	4	43	1	0	0	0	0	1	0	0	0	9805	739	26	3	627	3	MPHOSPH8	13	20220830	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		20220830	94949048	649	3815											
SLC7A1	6541	broad.mit.edu;ucsc.edu	37	chr13	30088682	30088682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcatccagggacgcctcctCgctgtgccacaggccatagc	12	16	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30088682	C	T	30088682	3	4	43	1	0	0	0	0	1	0	0	0	14790	893	31	1	68	1	SLC7A1	13	30088682	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9867852	30088682	85081196	650	3816											
NBEA	26960	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr13	35733452	35733452	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatagaccaggaagtggtgtAcatgtggaagtacatgatct	13	5	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	35733452	A	G	35733452	2	3	43	1	0	0	0	0	0	0	0	1	10265	378	14	2		2	NBEA	13	35733452	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	5644770	35733452	79436426	651	3817											
SPG20	23111	broad.mit.edu;ucsc.edu	37	chr13	36909383	36909383	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaactcctctccaactgaTgaaaactccccagaatctgt	4	13	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	36909383	T	C	36909383	2	2	43	1	0	0	0	0	0	0	0	1	15142	1451	51	4		4	SPG20	13	36909383	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1175931	36909383	78260495	652	3818											
WBP4	11193	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	41657033	41657033	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctagaaatttaaggcaaCgaggtgatgatcaatagttg	10	4	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	41657033	C	T	41657033	4	4	43	1	0	0	0	0	0	1	0	0	17367	528	19	1	1152	1	WBP4	13	41657033	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4747650	41657033	73512845	653	3819											
SPERT	220082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	46287927	46287927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccgggaggagaatcgcgCgctgcagcagctgctggagc	16	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	46287927	C	T	46287927	3	4	43	1	0	0	0	0	1	0	0	0	15139	768	27	1	777	1	SPERT	13	46287927	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4630894	46287927	68881951	654	3820											
RB1	5925	broad.mit.edu;hgsc.bcm.edu	37	chr13	49033915	49033915	+	Frame_Shift_Del	DEL	C	C	-													catatcatctggacccttttCcagcacaccctgcagaatga					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	49033915	C	-	49033915	7	5	43	1	0	1	0	1	0	0	0	0	13190	854	30	0	2130	0	RB1	13	49033915	Frame_Shift_Del	DEL	C	TCGA-KN-8428-01A-11D-2310-10	2745988	49033915	66135963	655	3821	94	2									
RB1	5925	bcgsc.ca	37	chr13	49033916	49033916	+	Frame_Shift_Del	DEL	C	C	-													atatcatctggacccttttcCagcacaccctgcagaatgag					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	49033916	C	-	49033916	7	5	43	1	0	1	0	1	0	0	0	0	13190	595	21	0	2131	0	RB1	13	49033916	Frame_Shift_Del	DEL	C	TCGA-KN-8428-01A-11D-2310-10	1	49033916	66135962	656	3822	94	2									
DIS3	22894	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr13	73348179	73348179	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtaggcttcaacattttctCgcttacagcagtcttaagct	7	10	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73348179	C	T	73348179	3	4	43	1	0	0	0	0	1	0	0	0	4572	893	31	1	1930	1	DIS3	13	73348179	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24314263	73348179	41821699	657	3823											
HS6ST3	266722	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	97484970	97484970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctaacaatcgccaggtgCgcatgctggctgacctcagc	12	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	97484970	C	T	97484970	3	4	43	1	0	0	0	0	1	0	0	0	7430	768	27	1	940	1	HS6ST3	13	97484970	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	24136791	97484970	17684908	658	3824											
ATP11A	23250	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	113530121	113530121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actaccagaggatgtactacGtgttcatccagatgctgtcc	9	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	113530121	G	A	113530121	3	1	43	1	0	0	0	0	1	0	0	0	1123	1145	40	1	3303	1	ATP11A	13	113530121	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16045151	113530121	1639757	659	3825											
RASA3	22821	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr13	114780772	114780772	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccccagactcagtgatggCgtggaagacgcggtccacat	12	13	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	114780772	C	T	114780772	3	4	43	1	0	0	0	0	1	0	0	0	13154	768	27	1	1230	1	RASA3	13	114780772	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1250651	114780772	389106	660	3826											
OR4K13	390433	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	20502143	20502143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatctgctgaagggccagaCgtagataaagacacacggag	13	8	1	4	rs199734457		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20502143	C	T	20502143	3	4	43	1	0	0	0	0	1	0	0	0	11147	536	19	1	141	1	OR4K13	14	20502143	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		20502143	86847397	661	3827											
TTC5	91875	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20763923	20763923	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaagttgttgctctcGttgccggggctctggccagg	14	11	2	1	rs199831317		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	20763923	G	A	20763923	4	1	43	1	0	0	0	0	0	1	0	0	16817	1153	40	1	551	1	TTC5	14	20763923	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	261780	20763923	86585617	662	3828											
TEP1	7011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	20854663	20854663	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaggtcgattccgtgaaggCtgatacggtgaggggccgct	18	8	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	20854663	C	A	20854663	3	1	43	1	0	0	0	0	1	0	0	0	15863	797	28	5	5227	5	TEP1	14	20854663	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	90740	20854663	86494877	663	3829											
OR5AU1	390445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	21623218	21623218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagatgacagcaactgtgcGgtcctgggtcaaggagtagc	15	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21623218	G	A	21623218	3	1	43	1	0	0	0	0	1	0	0	0	11226	1116	39	1	124	1	OR5AU1	14	21623218	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	768555	21623218	85726322	664	3830											
SUPT16H	11198	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr14	21834651	21834651	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctgctttttaaccacGtccatgacagcgttatacac	7	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21834651	G	A	21834651	2	1	43	1	0	0	0	0	0	0	0	1	15496	1136	40	1		1	SUPT16H	14	21834651	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	211433	21834651	85514889	665	3831											
ACIN1	22985	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	23530539	23530539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcttttctttagacttcGcacgttccttgcggcggcgg	10	12	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	23530539	G	A	23530539	3	1	43	1	0	0	0	0	1	0	0	0	142	1087	38	1	471	1	ACIN1	14	23530539	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1695888	23530539	83819001	666	3832											
SLC7A8	23428	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	23596496	23596496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctctgtccctgagccccGctccacctcggggtacacga	9	19	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	23596496	G	A	23596496	3	1	43	1	0	0	0	0	1	0	0	0	14802	1086	38	1	113	1	SLC7A8	14	23596496	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	65957	23596496	83753044	667	3833											
LRRC16B	90668	broad.mit.edu	37	chr14	24529235	24529235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgacatctcccaagcctatcGcagcgcgcctgagcgcaccg	10	18	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	24529235	G	A	24529235	3	1	43	1	0	0	0	0	1	0	0	0	9044	1087	38	1	2015	1	LRRC16B	14	24529235	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	932739	24529235	82820305	668	3834											
PSME2	5721	broad.mit.edu	37	chr14	24615753	24615753	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccattacctgtttgcggGcttccccgctcaggcgcacc	9	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	24615753	G	A	24615753	3	1	43	1	0	0	0	0	1	0	0	0	12796	1203	42	3	725	3	PSME2	14	24615753	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	86518	24615753	82733787	669	3835											
TSSK4	283629	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	24675808	24675808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattctggaactggctcagGgtggtgatgtccttgaatgg	14	7	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	24675808	G	A	24675808	3	1	43	1	0	0	0	0	1	0	0	0	16776	1232	43	3	325	3	TSSK4	14	24675808	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	60055	24675808	82673732	670	3836											
TINF2	26277	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	24709841	24709841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacagcatgactgtggggCgctccttatggcctccccta	11	13	0	1	rs121918544		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	24709841	C	T	24709841	3	4	43	1	0	0	0	0	1	0	0	0	16027	768	27	1	530	1	TINF2	14	24709841	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	34033	24709841	82639699	671	3837											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	24877295	24877295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggaggagctggtggggcGactgcgctggggccctgccc	20	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	24877295	G	A	24877295	3	1	43	1	0	0	0	0	1	0	0	0	10875	1058	37	1	425	1	NYNRIN	14	24877295	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	167454	24877295	82472245	672	3838											
NYNRIN	57523	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr14	24879316	24879316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accagcttccagaggtaccaCgaggccctgaatacaccctt	8	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	24879316	C	T	24879316	2	4	43	1	0	0	0	0	0	0	0	1	10875	535	19	1		1	NYNRIN	14	24879316	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2021	24879316	82470224	673	3839											
HECTD1	25831	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	31609189	31609189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattaactttcgaattaacGcaactgctggtcgactgcga	8	10	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	31609189	G	A	31609189	3	1	43	1	0	0	0	0	1	0	0	0	7097	1087	38	1	5044	1	HECTD1	14	31609189	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6729873	31609189	75740351	674	3840											
NPAS3	64067	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr14	34145548	34145548	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgctgaggacggagcCagctcagcatcttcctcctc	11	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	34145548	C	T	34145548	2	4	43	1	0	0	0	0	0	0	0	1	10643	581	21	4		4	NPAS3	14	34145548	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2536359	34145548	73203992	675	3841											
NIN	51199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	51245506	51245506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttcatactcctcactgCgttgcgtcttccagtgctag	8	15	3	0	rs190295991	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	51245506	C	T	51245506	3	4	43	1	0	0	0	0	1	0	0	0	10496	768	27	1	6201	1	NIN	14	51245506	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	17099958	51245506	56104034	676	3842											
GPR137C	283554	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	53100600	53100600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gttccagagcttactttttcGacaatccaagacgatatgat	7	9	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	53100600	G	A	53100600	3	1	43	1	0	0	0	0	1	0	0	0	6704	1058	37	1	1070	1	GPR137C	14	53100600	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1855094	53100600	54248940	677	3843											
SYT16	83851	broad.mit.edu;bcgsc.ca	37	chr14	62463128	62463128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaattgggccagtgatgacCgcaagttaccacatgtgctt	10	11	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	62463128	C	T	62463128	3	4	43	1	0	0	0	0	1	0	0	0	15573	652	23	1	393	1	SYT16	14	62463128	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9362528	62463128	44886412	678	3844											
ZFYVE1	53349	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	73441651	73441651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgttatctttaaaggacgtcGcacacttgttgcagctctgt	9	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	73441651	G	A	73441651	3	1	43	1	0	0	0	0	1	0	0	0	17768	1087	38	1	522	1	ZFYVE1	14	73441651	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10978523	73441651	33907889	679	3845											
RBM25	58517	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	73570174	73570174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagatcgtaataaggatcGcagtcgatcaaggtaaggct	11	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	73570174	G	A	73570174	3	1	43	1	0	0	0	0	1	0	0	0	13217	1087	38	1	1176	1	RBM25	14	73570174	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	128523	73570174	33779366	680	3846											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	75302098	75302098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctgaaaaagccctcaatcGaaccaaatatatatgagact	7	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	75302098	G	A	75302098	3	1	43	1	0	0	0	0	1	0	0	0	17592	1058	37	1	6503	1	YLPM1	14	75302098	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1731924	75302098	32047442	681	3847											
NEK9	91754	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	75555313	75555313	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggagatgggctgtcaGgcatggggataaattctgca	16	5	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	75555313	G	T	75555313	3	4	43	1	0	0	0	0	1	0	0	0	10410	1000	35	5	477	5	NEK9	14	75555313	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	253215	75555313	31794227	682	3848											
GPR65	8477	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	88477823	88477823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtctaccaagctgtgcGgcacaataaagccacggaaa	10	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	88477823	G	A	88477823	3	1	43	1	0	0	0	0	1	0	0	0	6763	1116	39	1	634	1	GPR65	14	88477823	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12922510	88477823	18871717	683	3849											
KCNK10	54207	broad.mit.edu;mdanderson.org	37	chr14	88652027	88652027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagttacacatcttttccGtctcctcctctttcttctcc	3	16	5	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	88652027	G	A	88652027	3	1	43	1	0	0	0	0	1	0	0	0	8120	1145	40	1	151	1	KCNK10	14	88652027	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	174204	88652027	18697513	684	3850											
PTPN21	11099	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr14	88945933	88945933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctcctgcagcgagtgCgccacgggcaggctgtcctc	13	16	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	88945933	C	T	88945933	2	4	43	1	0	0	0	0	0	0	0	1	12878	755	27	1		1	PTPN21	14	88945933	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	293906	88945933	18403607	685	3851											
TTC8	123016	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	89307767	89307767	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctattgtttttcctctgtAggcttccatgcttacaagtc	7	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	89307767	A	G	89307767	5	3	43	1	0	0	0	0	0	0	1	0	16820	434	15	2	510	2	TTC8	14	89307767	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	361834	89307767	18041773	686	3852											
FOXN3	1112	broad.mit.edu	37	chr14	89817014	89817014	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaagtctgaattgcttAcctttgatatgcctgaggac	9	7	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	89817014	A	G	89817014	5	3	43	1	0	0	0	0	0	0	1	0	6072	405	14	2	810	2	FOXN3	14	89817014	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	509247	89817014	17532526	687	3853											
RPS6KA5	9252	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	91366523	91366523	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttcgacaaattgaaaaActaccttctcccaggggttt	6	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	91366523	A	C	91366523	3	2	43	1	0	0	0	0	1	0	0	0	13749	40	2	5	1134	5	RPS6KA5	14	91366523	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1549509	91366523	15983017	688	3854											
GOLGA5	9950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	93277911	93277911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacagagcgagtttgctgcaCgccttaataaagtggaaatg	11	8	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	93277911	C	T	93277911	3	4	43	1	0	0	0	0	1	0	0	0	6612	536	19	1	1150	1	GOLGA5	14	93277911	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1911388	93277911	14071629	689	3855											
ATG2B	55102	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr14	96772058	96772058	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtaagggggctttgctcGtatcggtcttattaacgggc	14	7	1	0	rs138090571		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	96772058	G	A	96772058	3	1	43	1	0	0	0	0	1	0	0	0	1098	1145	40	1	1683	1	ATG2B	14	96772058	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3494147	96772058	10577482	690	3856											
PAPOLA	10914	broad.mit.edu	37	chr14	97014212	97014212	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtaaaaagaaagcaacTccatcaactactacctaatc	4	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	97014212	T	A	97014212	3	1	43	1	0	0	0	0	1	0	0	0	11508	1551	54	5	1540	5	PAPOLA	14	97014212	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	242154	97014212	10335328	691	3857											
HHIPL1	84439	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr14	100141822	100141822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcggccagggcggctcgctGcccattctgctggacgatgt	14	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	100141822	G	A	100141822	2	1	43	1	0	0	0	0	0	0	0	1	7151	1306	46	4		4	HHIPL1	14	100141822	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3127610	100141822	7207718	692	3858											
RTL1	388015	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	101350657	101350657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aagttctgcggttgagtgctCggtctggttttgctcttgag	14	7	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	101350657	C	T	101350657	3	4	43	1	0	0	0	0	1	0	0	0	13819	893	31	1	3611	1	RTL1	14	101350657	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1208835	101350657	5998883	693	3859											
ZNF839	55778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	102807759	102807759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtgttccaggcgggccCgcagcttcaggcactggcta	15	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	102807759	C	T	102807759	3	4	43	1	0	0	0	0	1	0	0	0	18291	652	23	1	2057	1	ZNF839	14	102807759	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1457102	102807759	4541781	694	3860											
CKB	1152	broad.mit.edu;mdanderson.org	37	chr14	103988669	103988669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcctgtctggatgacgtcGtccagcgtgaagccgctcgg	14	13	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	103988669	G	A	103988669	2	1	43	1	0	0	0	0	0	0	0	1	3475	1136	40	1		1	CKB	14	103988669	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1180910	103988669	3360871	695	3861											
TDRD9	122402	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	104431775	104431775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttggaccactacgttcagCgctccgcctactgcagcatt	8	15	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	104431775	C	T	104431775	3	4	43	1	0	0	0	0	1	0	0	0	15840	768	27	1	540	1	TDRD9	14	104431775	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	443106	104431775	2917765	696	3862											
AHNAK2	113146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	105416582	105416582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggtgccctttgaagcCggctccctcgggaagggggc	19	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	105416582	C	T	105416582	3	4	43	1	0	0	0	0	1	0	0	0	415	652	23	1	12185	1	AHNAK2	14	105416582	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	984807	105416582	1932958	697	3863											
CYFIP1	23191	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	22999456	22999456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctggatgaccccatctggCgcgggcctctgcccagcaat	11	15	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	22999456	C	T	22999456	3	4	43	1	0	0	0	0	1	0	0	0	4168	768	27	1	3819	1	CYFIP1	15	22999456	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		22999456	79531936	698	3864											
MAGEL2	54551	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	23889371	23889371	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tactctgcgggctcagtgtaAgggattcgcctgtactctag	12	10	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	23889371	A	T	23889371	2	4	43	1	0	0	0	0	0	0	0	1	9266	59	3	5		5	MAGEL2	15	23889371	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	889915	23889371	78642021	699	3865											
HERC2	8924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	28427617	28427617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaacaccttggttcttatcGtagctgctgattccagccca	7	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	28427617	G	A	28427617	3	1	43	1	0	0	0	0	1	0	0	0	7116	1145	40	1	5785	1	HERC2	15	28427617	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4538246	28427617	74103775	700	3866											
HERC2	8924	broad.mit.edu	37	chr15	28478879	28478879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccacgggatgctcgggggGaaacatgatcggtgtggtca	16	8	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	28478879	G	A	28478879	3	1	43	1	0	0	0	0	1	0	0	0	7116	1174	41	3	10486	3	HERC2	15	28478879	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	51262	28478879	74052513	701	3867											
TJP1	7082	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	30010880	30010880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggctgctcttcgtgccGcagggcggatgctctaggtg	16	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	30010880	G	A	30010880	3	1	43	1	0	0	0	0	1	0	0	0	16033	1086	38	1	1812	1	TJP1	15	30010880	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1532001	30010880	72520512	702	3868											
CHRNA7	1139	mdanderson.org	37	chr15	32460285	32460285	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccgtggcgccgccgcccGccagcaacgggaacctgctg	15	18	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	32460285	G	A	32460285	3	1	43	1	0	0	0	0	1	0	0	0	3417	1087	38	1	1173	1	CHRNA7	15	32460285	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2449405	32460285	70071107	703	3869											
CASC5	57082	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	40916787	40916787	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacatttatgttattcctcAgcctcatttctcaaccgacc	4	13	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	40916787	A	G	40916787	3	3	43	1	0	0	0	0	1	0	0	0	2688	188	7	2	4441	2	CASC5	15	40916787	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	8456502	40916787	61614605	704	3870											
ZFYVE19	84936	hgsc.bcm.edu;mdanderson.org	37	chr15	41105576	41105576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagacagtgatgacgaCgaggatgaggagacagccat	13	10	0	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	41105576	C	T	41105576	2	4	43	1	0	0	0	0	0	0	0	1	17770	535	19	1		1	ZFYVE19	15	41105576	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	188789	41105576	61425816	705	3871											
RTF1	23168	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr15	41769459	41769459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggccctggaccgccagCggaccaagaacatatccgct	11	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	41769459	C	T	41769459	3	4	43	1	0	0	0	0	1	0	0	0	13816	759	27	1	1707	1	RTF1	15	41769459	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	663883	41769459	60761933	706	3872											
RPAP1	26015	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41814441	41814441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccggggcagccaatatgGcagccagctgaggaaaagca	14	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	41814441	G	A	41814441	3	1	43	1	0	0	0	0	1	0	0	0	13636	1203	42	3	1455	3	RPAP1	15	41814441	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	44982	41814441	60716951	707	3873											
PLA2G4B	100137049	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	42131115	42131115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgaggactcagtctcatgGctgtggtaaggcctggcagg	15	10	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	42131115	G	T	42131115	3	4	43	1	0	0	0	0	1	0	0	0	12082	1203	42	5	6	5	PLA2G4B	15	42131115	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	316674	42131115	60400277	708	3874											
EHD4	30844	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr15	42193092	42193092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatatcttgccattgatgggCgacagagtgtagaagagctc	13	7	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	42193092	C	T	42193092	2	4	43	1	0	0	0	0	0	0	0	1	5017	755	27	1		1	EHD4	15	42193092	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	61977	42193092	60338300	709	3875											
TMEM87A	25963	broad.mit.edu	37	chr15	42564314	42564314	+	Frame_Shift_Del	DEL	T	T	-													tctttccaaaactaaaataaTttttcccctgcaaacataaa					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	42564314	T	-	42564314	7	5	43	1	0	1	0	1	0	0	0	0	16314	1493	52	0	1637	0	TMEM87A	15	42564314	Frame_Shift_Del	DEL	T	TCGA-KN-8428-01A-11D-2310-10	371222	42564314	59967078	710	3876											
GANC	2595	broad.mit.edu;mdanderson.org	37	chr15	42619597	42619597	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatttcaccaatcccaaggTcagagagtggtattcaagtc	10	9	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	42619597	T	C	42619597	3	2	43	1	0	0	0	0	1	0	0	0	6288	1667	58	2	1507	2	GANC	15	42619597	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	55283	42619597	59911795	711	3877											
TGM7	116179	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	43585733	43585733	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaagggctggccgcggCgcacagtgagccgcttgacg	18	11	0	3	rs150218635	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	43585733	C	T	43585733	3	4	43	1	0	0	0	0	1	0	0	0	15939	768	27	1	2073	1	TGM7	15	43585733	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	966136	43585733	58945659	712	3878											
TP53BP1	7158	broad.mit.edu	37	chr15	43773188	43773188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttctcttcctccacaGcaggagcagattccactgac	6	17	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	43773188	G	A	43773188	3	1	43	1	0	0	0	0	1	0	0	0	16488	971	34	4	5625	4	TP53BP1	15	43773188	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	187455	43773188	58758204	713	3879											
MAP1A	4130	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	43821457	43821457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagagtagagaggctaCgggagaaggaaaaggttcag	18	4	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	43821457	C	T	43821457	3	4	43	1	0	0	0	0	1	0	0	0	9304	527	19	1	7788	1	MAP1A	15	43821457	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	48269	43821457	58709935	714	3880											
DUOX2	50506	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	45396231	45396231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacatggtaaacattagacGggacttatcctctggggagc	11	8	1	1	rs201955961		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	45396231	G	A	45396231	3	1	43	1	0	0	0	0	1	0	0	0	4838	1116	39	1	2125	1	DUOX2	15	45396231	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1574774	45396231	57135161	715	3881											
FBN1	2200	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr15	48703307	48703307	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttataaagtggagtactActgatttgtaatgaataggt	9	2	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	48703307	A	G	48703307	2	3	43	1	0	0	0	0	0	0	0	1	5751	388	14	2		2	FBN1	15	48703307	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3307076	48703307	53828085	716	3882											
FBN1	2200	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	48755319	48755319	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcacagggcttgttccaCgcccggccaatgttgtagga	12	11	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	48755319	C	T	48755319	2	4	43	1	0	0	0	0	0	0	0	1	5751	523	19	1		1	FBN1	15	48755319	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	52012	48755319	53776073	717	3883											
CEP152	22995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	49030737	49030737	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgtatctgaaagataaccGgatggtgaaaactgtttgga	11	5	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49030737	G	A	49030737	2	1	43	1	0	0	0	0	0	0	0	1	3277	1103	39	1		1	CEP152	15	49030737	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	275418	49030737	53500655	718	3884											
SECISBP2L	9728	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	49304966	49304966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctgacttttggttaaaGgttttctattagtagagtct	11	4	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49304966	G	T	49304966	3	4	43	1	0	0	0	0	1	0	0	0	14104	1000	35	5	1723	5	SECISBP2L	15	49304966	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	274229	49304966	53226426	719	3885											
HERC1	8925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	63966709	63966709	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagaactgcagggctgctcGcatctccacgtcttcatgaa	9	13	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	63966709	G	A	63966709	4	1	43	1	0	0	0	0	0	1	0	0	7115	1095	38	1	7071	1	HERC1	15	63966709	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	14661743	63966709	38564683	720	3886											
PLEKHO2	80301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	65157910	65157910	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgaacaaggtgctgggCagtgagccggcccctgttag	15	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	65157910	C	T	65157910	2	4	43	1	0	0	0	0	0	0	0	1	12165	697	25	4		4	PLEKHO2	15	65157910	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1191201	65157910	37373482	721	3887											
MEGF11	84465	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	66214758	66214758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggcctgctgctgtgcacGcagagggggcatggctgggc	19	11	0	1	rs146260891		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	66214758	G	A	66214758	2	1	43	1	0	0	0	0	0	0	0	1	9538	1079	38	1		1	MEGF11	15	66214758	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1056848	66214758	36316634	722	3888											
SMAD3	4088	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	67358664	67358664	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaggccatcaccacgCagaacgtcaacaccaagtgc	10	13	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	67358664	C	T	67358664	4	4	43	1	0	0	0	0	0	1	0	0	14857	711	25	4	174	4	SMAD3	15	67358664	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1143906	67358664	35172728	723	3889											
GLCE	26035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	69548276	69548276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtttccacggcgttcgaGtagtggcttcagagtggatg	14	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	69548276	G	T	69548276	3	4	43	1	0	0	0	0	1	0	0	0	6488	1029	36	5	133	5	GLCE	15	69548276	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2189612	69548276	32983116	724	3890											
MYO9A	4649	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	72292238	72292238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttttctcccactgtcaccGtcttccttgtaactaatgct	5	14	3	0	rs148826761		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	72292238	G	A	72292238	3	1	43	1	0	0	0	0	1	0	0	0	10162	1145	40	1	6358	1	MYO9A	15	72292238	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2743962	72292238	30239154	725	3891											
HCN4	10021	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	73615982	73615982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttggcgtctgcccggcacCgaggttgcccagcccagatc	12	17	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73615982	C	T	73615982	3	4	43	1	0	0	0	0	1	0	0	0	7057	652	23	1	1163	1	HCN4	15	73615982	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1323744	73615982	28915410	726	3892											
PML	5371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	74315583	74315583	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagaggatgaagtgctaCgcctcggaccaggaggtgct	16	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	74315583	C	T	74315583	2	4	43	1	0	0	0	0	0	0	0	1	12215	547	19	1		1	PML	15	74315583	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	699601	74315583	28215809	727	3893											
PML	5371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	74327978	74327978	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcccaccccaccggataCgaggggctgtgcgatcccgc	12	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	74327978	C	T	74327978	4	4	43	1	0	0	0	0	0	1	0	0	12215	528	19	1	2340	1	PML	15	74327978	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12395	74327978	28203414	728	3894											
CCDC33	80125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	74554873	74554873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccctatctggggggacaCggtgaatgtggagatccaag	15	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	74554873	C	T	74554873	3	4	43	1	0	0	0	0	1	0	0	0	2832	536	19	1	288	1	CCDC33	15	74554873	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	226895	74554873	27976519	729	3895											
LMAN1L	79748	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75108525	75108525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgggcctggaggaagtgcGgctgacgccatccatgagga	16	11	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	75108525	G	A	75108525	3	1	43	1	0	0	0	0	1	0	0	0	8901	1116	39	1	209	1	LMAN1L	15	75108525	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	553652	75108525	27422867	730	3896											
SNX33	257364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	75949418	75949418	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggtttcgccctgcaggcCgagatgaaccacttccacca	11	14	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	75949418	C	T	75949418	2	4	43	1	0	0	0	0	0	0	0	1	15001	639	23	1		1	SNX33	15	75949418	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	840893	75949418	26581974	731	3897											
CSPG4	1464	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	75980709	75980709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacattggtgaggacaggCgcatctgggtcaccaccaat	13	10	2	1	rs144209551		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	75980709	C	T	75980709	2	4	43	1	0	0	0	0	0	0	0	1	3991	755	27	1		1	CSPG4	15	75980709	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	31291	75980709	26550683	732	3898											
TSPAN3	10099	hgsc.bcm.edu	37	chr15	77363263	77363263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggttgagaaagaccagcaCggtcttggaggaggtgatgc	17	6	1	3	rs111428129		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	77363263	C	T	77363263	3	4	43	1	0	0	0	0	1	0	0	0	16750	536	19	1	755	1	TSPAN3	15	77363263	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1382554	77363263	25168129	733	3899											
RASGRF1	5923	mdanderson.org;bcgsc.ca	37	chr15	79324607	79324607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtactggtggttgcggAcgaactcttggtagatgttg	16	6	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	79324607	A	G	79324607	3	3	43	1	0	0	0	0	1	0	0	0	13164	275	10	2	2899	2	RASGRF1	15	79324607	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	1961344	79324607	23206785	734	3900											
MESDC1	59274	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr15	81295560	81295560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcagcaccccgacgggggCgccaagatgtcggaccacag	15	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	81295560	C	T	81295560	2	4	43	1	0	0	0	0	0	0	0	1	9557	755	27	1		1	MESDC1	15	81295560	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1970953	81295560	21235832	735	3901											
TMC3	342125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	81630237	81630237	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgagctttagagaccgtgCgatgctctggagataataga	13	7	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	81630237	C	T	81630237	3	4	43	1	0	0	0	0	1	0	0	0	16090	768	27	1	1208	1	TMC3	15	81630237	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	334677	81630237	20901155	736	3902											
TMC3	342125	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	81637207	81637207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtataagctgaaatgctgGtctcttccaaggcccatgtg	11	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	81637207	G	A	81637207	3	1	43	1	0	0	0	0	1	0	0	0	16090	1261	44	3	1924	3	TMC3	15	81637207	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6970	81637207	20894185	737	3903											
HOMER2	9455	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	83527811	83527811	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaatcttcagcttgtcaTtctcagacttcaggtgtgtg	10	9	5	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	83527811	T	C	83527811	3	2	43	1	0	0	0	0	1	0	0	0	7337	1493	52	4	587	4	HOMER2	15	83527811	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1890604	83527811	19003581	738	3904											
ALPK3	57538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	85403008	85403008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggtctccactctgcagcGcaggggatgaggggccggcg	18	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	85403008	G	A	85403008	3	1	43	1	0	0	0	0	1	0	0	0	546	1101	38	1	4603	1	ALPK3	15	85403008	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1875197	85403008	17128384	739	3905											
AGBL1	123624	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	86807816	86807816	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgcctgggacgtagatGcaattttctgcccaaggatg	12	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	86807816	G	A	86807816	3	1	43	1	0	0	0	0	1	0	0	0	375	1319	46	4	1310	4	AGBL1	15	86807816	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1404808	86807816	15723576	740	3906											
NTRK3	4916	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	88420245	88420245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatctccttgatgttcaacCgctgctgtggttccctctgc	9	13	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	88420245	C	T	88420245	3	4	43	1	0	0	0	0	1	0	0	0	10787	652	23	1	82	1	NTRK3	15	88420245	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1612429	88420245	14111147	741	3907											
IGF1R	3480	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	99454671	99454671	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accgtttactacaaggaagcGtgagtttctgctttgggtga	12	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	99454671	G	A	99454671	5	1	43	1	0	0	0	0	0	0	1	0	7632	1159	40	1	1616	1	IGF1R	15	99454671	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	11034426	99454671	3076721	742	3908											
OR4F15	390649	broad.mit.edu	37	chr15	102359272	102359272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattcaggaacaaagacatgAaagtggcaatgaggagactg	12	6	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	102359272	A	G	102359272	3	3	43	1	0	0	0	0	1	0	0	0	11140	247	9	4	885	4	OR4F15	15	102359272	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2904601	102359272	172120	743	3909											
RHBDL1	9028	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	727990	727990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggcaccttcctgctcttcGccgtcttctggaacgtcttc	8	16	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	727990	G	A	727990	3	1	43	1	0	0	0	0	1	0	0	0	13414	1087	38	1	1281	1	RHBDL1	16	727990	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		727990	89626763	744	3910											
MSLN	10232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	818456	818456	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggaggagcggcaccgcccGgtgcgggactggatcctacg	18	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	818456	G	A	818456	2	1	43	1	0	0	0	0	0	0	0	1	9959	1103	39	1		1	MSLN	16	818456	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	90466	818456	89536297	745	3911											
TPSAB1	7177	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	1291624	1291624	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agccacgtccacacggtcacCctgccccctgcctcagagac	8	20	2	1	rs1064782		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	1291624	C	G	1291624	2	3	43	1	0	0	0	0	0	0	0	1	16528	610	22	5		5	TPSAB1	16	1291624	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	473168	1291624	89063129	746	3912											
TPSD1	23430	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr16	1306310	1306311	+	Silent	DNP	GC	GC	AT													ccttgctccccagatgctgaGcctgctgctgctggcgctgc					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		AT	1306311	GC	AT	1306310	2	1	43	1	0	0	0	0	0	0	0	1	16530	971	34	4		4	TPSD1	16	1306310	Silent	DNP	GC	TCGA-KN-8428-01A-11D-2310-10	14686	1306310	89048443	747	3913											
TPSD1	23430	ucsc.edu;mdanderson.org	37	chr16	1306954	1306954	+	Silent	SNP	C	C	G													ctgctggagctggaggagccCgtgaacatctccagccacat					rs61729110	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	1306954	C	G	1306954	2	3	43	1	0	0	0	0	0	0	0	1	16530	639	23	5		5	TPSD1	16	1306954	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	644	1306954	89047799	748	3914	95	2									
TPSD1	23430	ucsc.edu;bcgsc.ca	37	chr16	1306961	1306961	+	Missense_Mutation	SNP	A	A	G													agctggaggagcccgtgaacAtctccagccacatccacacg					rs139077060		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	1306961	A	G	1306961	3	3	43	1	0	0	0	0	1	0	0	0	16530	217	8	4	428	4	TPSD1	16	1306961	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	7	1306961	89047792	749	3915	95	2									
IFT140	9742	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	1574679	1574679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgccaggtttcctgtctcGttggctatttgcgcagccta	11	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1574679	G	A	1574679	2	1	43	1	0	0	0	0	0	0	0	1	7617	1136	40	1		1	IFT140	16	1574679	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	267718	1574679	88780074	750	3916											
IFT140	9742	broad.mit.edu	37	chr16	1612076	1612076	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcatgaagcaggaagccGtgctcttcggaaatgaagaa	11	9	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1612076	G	A	1612076	2	1	43	1	0	0	0	0	0	0	0	1	7617	1136	40	1		1	IFT140	16	1612076	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	37397	1612076	88742677	751	3917											
TBL3	10607	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	2026870	2026870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcactgtgaagctgtggCctcttcccaaagccttgctg	10	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2026870	C	T	2026870	3	4	43	1	0	0	0	0	1	0	0	0	15747	739	26	3	1402	3	TBL3	16	2026870	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	414794	2026870	88327883	752	3918											
NTHL1	4913	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	2093638	2093638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcccaacacccggcagCgccaccagctcggccacaga	11	18	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2093638	C	T	2093638	2	4	43	1	0	0	0	0	0	0	0	1	10777	755	27	1		1	NTHL1	16	2093638	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	66768	2093638	88261115	753	3919											
TRAF7	84231	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	2226329	2226329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccagggcagtgtcaccGcgctggctgtgtcccggggc	16	14	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	2226329	G	A	2226329	3	1	43	1	0	0	0	0	1	0	0	0	16551	1087	38	1	2016	1	TRAF7	16	2226329	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	132691	2226329	88128424	754	3920											
E4F1	1877	mdanderson.org	37	chr16	2282184	2282184	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcctaggtggtgggcacaTcaaagaggtcatcgtggctg	14	9	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	2282184	T	C	2282184	3	2	43	1	0	0	0	0	1	0	0	0	4911	1435	50	4	442	4	E4F1	16	2282184	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	55855	2282184	88072569	755	3921											
CEMP1	752014	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	2580968	2580968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggagaggagctgtcttgCcagggctcccaggcagggag	18	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2580968	C	T	2580968	3	4	43	1	0	0	0	0	1	0	0	0	3253	739	26	3	640	3	CEMP1	16	2580968	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	298784	2580968	87773785	756	3922											
ZNF263	10127	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	3334016	3334016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccggctccaagagctttgCcatgggtggcttcggcctga	14	12	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	3334016	C	T	3334016	2	4	43	1	0	0	0	0	0	0	0	1	17908	747	26	3		3	ZNF263	16	3334016	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	753048	3334016	87020737	757	3923											
PPL	5493	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	4934370	4934370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttcttcctgctccagcGctgccagccgctgctgcaac	9	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	4934370	G	A	4934370	3	1	43	1	0	0	0	0	1	0	0	0	12419	1087	38	1	988	1	PPL	16	4934370	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1600354	4934370	85420383	758	3924											
PPL	5493	broad.mit.edu;mdanderson.org	37	chr16	4940317	4940317	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcgtaggctgccttggcGctctgtaggctctgcgccct	13	14	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	4940317	G	A	4940317	2	1	43	1	0	0	0	0	0	0	0	1	12419	1078	38	1		1	PPL	16	4940317	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5947	4940317	85414436	759	3925											
ALG1	56052	mdanderson.org	37	chr16	5129069	5129069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattctcttctcatagaggaCgaagacttctccatcctgct	6	12	3	2	rs144029725	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	5129069	C	T	5129069	2	4	43	1	0	0	0	0	0	0	0	1	510	535	19	1		1	ALG1	16	5129069	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	188752	5129069	85225684	760	3926											
KIAA0430	9665	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr16	15711251	15711251	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caattcgtggaggagccgtcGtgtgactgggaagaccccaa	14	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	15711251	G	A	15711251	2	1	43	1	0	0	0	0	0	0	0	1	8238	1136	40	1		1	KIAA0430	16	15711251	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10582182	15711251	74643502	761	3927											
MYH11	4629	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	15818057	15818057	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcttttccaggttggacacGagttgccgctggttgtccaa	11	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	15818057	G	A	15818057	2	1	43	1	0	0	0	0	0	0	0	1	10109	1045	37	1		1	MYH11	16	15818057	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	106806	15818057	74536696	762	3928											
ITPRIPL2	162073	hgsc.bcm.edu;ucsc.edu	37	chr16	19126839	19126839	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggggtgtgaacacagcAcgccaggagcagaagctgct	15	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	19126839	A	C	19126839	2	2	43	1	0	0	0	0	0	0	0	1	7986	146	6	5		5	ITPRIPL2	16	19126839	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3308782	19126839	71227914	763	3929											
SYT17	51760	broad.mit.edu;mdanderson.org	37	chr16	19236099	19236099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaattgatcctttctacaaTgaatccttcagcttcaaagt	4	10	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	19236099	T	C	19236099	2	2	43	1	0	0	0	0	0	0	0	1	15574	1461	51	4		4	SYT17	16	19236099	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	109260	19236099	71118654	764	3930											
UMOD	7369	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	20360337	20360337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcgacaggcggaagccttCggggcagacgcaggagaagg	20	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20360337	C	T	20360337	3	4	43	1	0	0	0	0	1	0	0	0	17085	893	31	1	1672	1	UMOD	16	20360337	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1124238	20360337	69994416	765	3931											
DCUN1D3	123879	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	20873571	20873571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccgctcatccttgtagCgcctgaacagttcttccaat	6	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20873571	C	T	20873571	3	4	43	1	0	0	0	0	1	0	0	0	4347	768	27	1	632	1	DCUN1D3	16	20873571	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	513234	20873571	69481182	766	3932											
DNAH3	55567	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	20996802	20996802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgtcctgcttcaggacaCggcagatcctagagatgtgc	11	11	1	2	rs200916697		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	20996802	C	T	20996802	3	4	43	1	0	0	0	0	1	0	0	0	4640	536	19	1	5147	1	DNAH3	16	20996802	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	123231	20996802	69357951	767	3933											
OTOA	146183	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	21734300	21734300	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctcttggctgcactcccGtaagtgaacatcagccccca	7	16	2	1	rs148690740		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21734300	G	A	21734300	5	1	43	1	0	0	0	0	0	0	1	0	11381	1159	40	1	1993	1	OTOA	16	21734300	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	737498	21734300	68620453	768	3934											
UQCRC2	7385	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	21968871	21968871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaccacccatttgctgcGtcttacatccagtctggtga	9	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21968871	G	A	21968871	3	1	43	1	0	0	0	0	1	0	0	0	17126	1145	40	1	261	1	UQCRC2	16	21968871	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	234571	21968871	68385882	769	3935											
ERN2	10595	mdanderson.org	37	chr16	23702743	23702743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctccagccagtcactgaCgtcctggggcccagagagct	11	15	2	2	rs144279415		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	23702743	C	T	23702743	3	4	43	1	0	0	0	0	1	0	0	0	5277	536	19	1	412	1	ERN2	16	23702743	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1733872	23702743	66652010	770	3936											
CHP2	63928	broad.mit.edu	37	chr16	23767738	23767738	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctctatgacctggatcgcGatgggaagatctccaggcat	12	10	2	2	rs79455352	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	23767738	G	A	23767738	3	1	43	1	0	0	0	0	1	0	0	0	3396	1058	37	1	400	1	CHP2	16	23767738	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	64995	23767738	66587015	771	3937											
PRKCB	5579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	23999859	23999859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtgcacaagcggtgccAtgaatttgtcacattctcct	10	10	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	23999859	A	G	23999859	3	3	43	1	0	0	0	0	1	0	0	0	12597	217	8	4	246	4	PRKCB	16	23999859	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	232121	23999859	66354894	772	3938											
SULT1A2	6799	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	28603675	28603675	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcttcatctccttgaaCgacgtgtgctcaaccatgag	7	12	5	2	rs141569114	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	28603675	C	T	28603675	2	4	43	1	0	0	0	0	0	0	0	1	15473	523	19	1		1	SULT1A2	16	28603675	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4603816	28603675	61751078	773	3939											
ASPHD1	253982	broad.mit.edu	37	chr16	29917204	29917204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccctcgactttgtcttcGccccagacccttgaaggaag	10	14	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	29917204	G	A	29917204	3	1	43	1	0	0	0	0	1	0	0	0	1058	1087	38	1	1169	1	ASPHD1	16	29917204	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1313529	29917204	60437549	774	3940											
TBX6	6911	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	30097724	30097724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccgagtagggggctgagCgcccggagtctggagcctcc	17	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30097724	C	T	30097724	3	4	43	1	0	0	0	0	1	0	0	0	15766	768	27	1	181	1	TBX6	16	30097724	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	180520	30097724	60257029	775	3941											
SRCAP	10847	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr16	30748499	30748499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactggtggaggcacccacCggcgcagtaaaaaggccaaa	14	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30748499	C	T	30748499	3	4	43	1	0	0	0	0	1	0	0	0	15235	643	23	1	7264	1	SRCAP	16	30748499	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	650775	30748499	59606254	776	3942											
RNF40	9810	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr16	30777565	30777565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctggagaaactgcaggccGaacttcagggggctgtgcgg	17	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	30777565	G	A	30777565	3	1	43	1	0	0	0	0	1	0	0	0	13588	1059	37	1	1105	1	RNF40	16	30777565	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	29066	30777565	59577188	777	3943											
ZNF646	9726	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	31090347	31090347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctacaggcttcaccggcGccaggcccacagctcctctg	11	17	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	31090347	G	A	31090347	3	1	43	1	0	0	0	0	1	0	0	0	18167	1087	38	1	2704	1	ZNF646	16	31090347	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	312782	31090347	59264406	778	3944											
ZNF423	23090	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	49671194	49671194	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccattggagatggagttggcGcttgctgagagccgctgccg	16	10	0	2	rs151294188	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49671194	G	A	49671194	2	1	43	1	0	0	0	0	0	0	0	1	18003	1078	38	1		1	ZNF423	16	49671194	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18580847	49671194	40683559	779	3945											
SALL1	6299	broad.mit.edu	37	chr16	51173805	51173805	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctgcaggaccacagcgttCgtgaacttcttctggcagat	11	11	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	51173805	C	T	51173805	2	4	43	1	0	0	0	0	0	0	0	1	13905	871	31	1		1	SALL1	16	51173805	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1502611	51173805	39180948	780	3946											
IRX6	79190	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	55360358	55360358	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctctgctgcgcaccctaCgatagtcgactgctgggcag	12	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	55360358	C	T	55360358	2	4	43	1	0	0	0	0	0	0	0	1	7909	547	19	1		1	IRX6	16	55360358	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4186553	55360358	34994395	781	3947											
SLC6A2	6530	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr16	55690630	55690630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctggcgcggatgaacccGcaggtgcagcccgagaacaa	13	13	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	55690630	G	A	55690630	2	1	43	1	0	0	0	0	0	0	0	1	14781	1074	38	1		1	SLC6A2	16	55690630	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	330272	55690630	34664123	782	3948											
FAM192A	80011	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	57188284	57188284	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatggtgccttcgctgtctGagctggactcggagtcgctg	15	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	57188284	G	A	57188284	3	1	43	1	0	0	0	0	1	0	0	0	5568	1294	45	4	85	4	FAM192A	16	57188284	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1497654	57188284	33166469	783	3949											
SLC12A4	6560	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	67980419	67980419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaccacggagttatgccGcatgcctcccaggccacagg	11	16	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	67980419	G	A	67980419	3	1	43	1	0	0	0	0	1	0	0	0	14483	1086	38	1	926	1	SLC12A4	16	67980419	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10792135	67980419	22374334	784	3950											
PDPR	55066	broad.mit.edu	37	chr16	70164360	70164360	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccggacatctgttcttcaTgtaatggtcaaaaaaggtca	9	8	5	0	rs201953730		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	70164360	T	A	70164360	3	1	43	1	0	0	0	0	1	0	0	0	11768	1461	51	5	660	5	PDPR	16	70164360	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	2183941	70164360	20190393	785	3951											
TAT	6898	broad.mit.edu	37	chr16	71602619	71602619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacaggcacccaccgttgCtgggaggcagtggacagact	14	12	0	1	rs137946175	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	71602619	C	T	71602619	3	4	43	1	0	0	0	0	1	0	0	0	15691	797	28	4	153	4	TAT	16	71602619	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1438259	71602619	18752134	786	3952											
ZFHX3	463	broad.mit.edu	37	chr16	72822644	72822644	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggggttggggagctcagCgacgctgaggacggtttatt	18	7	1	1	rs138129897	byfrequency;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	72822644	C	T	72822644	2	4	43	1	0	0	0	0	0	0	0	1	17739	755	27	1		1	ZFHX3	16	72822644	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1220025	72822644	17532109	787	3953											
MON1B	22879	broad.mit.edu	37	chr16	77228770	77228770	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgatggttttttctacgcCtacgtggcccgcctggatgc	11	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	77228770	C	A	77228770	2	1	43	1	0	0	0	0	0	0	0	1	9777	668	24	5		5	MON1B	16	77228770	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	4406126	77228770	13125983	788	3954											
WFDC1	58189	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	84353088	84353088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgaacccctgctctgtccctCgggctatgagtgccacatcc	9	17	1	1	rs145066295		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	84353088	C	T	84353088	3	4	43	1	0	0	0	0	1	0	0	0	17452	893	31	1	487	1	WFDC1	16	84353088	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7124318	84353088	6001665	789	3955											
USP10	9100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	84778426	84778426	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagcaagctatggctccatCgactgccagtacccaggctc	10	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	84778426	C	T	84778426	2	4	43	1	0	0	0	0	0	0	0	1	17147	874	31	1		1	USP10	16	84778426	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	425338	84778426	5576327	790	3956											
ACSF3	197322	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr16	89169104	89169104	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccatggtgtggtcaacgcGctgctctgtcctctctgggt	13	12	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	89169104	G	A	89169104	2	1	43	1	0	0	0	0	0	0	0	1	176	1074	38	1		1	ACSF3	16	89169104	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4390678	89169104	1185649	791	3957											
DEF8	54849	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	90020686	90020686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgatgagaagctggcccGtttccggcaggcccacctca	11	13	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	90020686	G	A	90020686	3	1	43	1	0	0	0	0	1	0	0	0	4419	1145	40	1	215	1	DEF8	16	90020686	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	851582	90020686	334067	792	3958											
C16orf3	750	mdanderson.org	37	chr16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC													ggcagcttacggggcaggctAtggggcagcctacggggcag					rs61118444	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		GC	90095597	AT	GC	90095596	3	3	43	1	0	0	0	0	1	0	0	0	1825	449	16	4	202	4	C16orf3	16	90095596	Missense_Mutation	DNP	AT	TCGA-KN-8428-01A-11D-2310-10	74910	90095596	259157	793	3959											
ITGAE	3682	hgsc.bcm.edu;ucsc.edu	37	chr17	3649159	3649159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttacgtctgaacactgcaGccgtctcctctgcttcccca	6	17	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	3649159	G	A	3649159	2	1	43	1	0	0	0	0	0	0	0	1	7946	962	34	4		4	ITGAE	17	3649159	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10		3649159	77546051	794	3960											
ATP2A3	489	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr17	3839671	3839671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggttgaagcccagagccGtggcaggtaggccgtctgtc	17	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	3839671	G	A	3839671	3	1	43	1	0	0	0	0	1	0	0	0	1142	1145	40	1	820	1	ATP2A3	17	3839671	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	190512	3839671	77355539	795	3961											
SMTNL2	342527	hgsc.bcm.edu;ucsc.edu	37	chr17	4500239	4500239	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agcatcaagcagatcctgctCgagtggtgccgcagcaagac	12	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	4500239	C	T	4500239	2	4	43	1	0	0	0	0	0	0	0	1	14914	871	31	1		1	SMTNL2	17	4500239	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	660568	4500239	76694971	796	3962											
USP6	9098	mdanderson.org	37	chr17	5044784	5044784	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaatagtagtaaaatagaTagacaaaagggtaagtctcc	9	5	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	5044784	T	C	5044784	2	2	43	1	0	0	0	0	0	0	0	1	17192	1403	49	4		4	USP6	17	5044784	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	544545	5044784	76150426	797	3963											
NLRP1	22861	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	5436264	5436264	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagaggcaggagaaggcacGcacaagagttccaccggtac	14	10	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	5436264	G	A	5436264	2	1	43	1	0	0	0	0	0	0	0	1	10550	1079	38	1		1	NLRP1	17	5436264	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	391480	5436264	75758946	798	3964											
SLC16A13	201232	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	6941569	6941569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggctggcactgacaggcGtgggcctctcctccttcaca	12	16	2	1	rs147982952		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6941569	G	A	6941569	3	1	43	1	0	0	0	0	1	0	0	0	14504	1145	40	1	452	1	SLC16A13	17	6941569	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1505305	6941569	74253641	799	3965											
NEURL4	84461	hgsc.bcm.edu;mdanderson.org	37	chr17	7228701	7228701	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcggagacggtcactgtgGttgttattgtggacgatggt	17	6	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	7228701	G	A	7228701	2	1	43	1	0	0	0	0	0	0	0	1	10426	1252	44	3		3	NEURL4	17	7228701	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	287132	7228701	73966509	800	3966											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcaaatttccttccactcGgataagatgctgaggagggg	12	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	7578263	G	A	7578263	4	1	43	1	0	0	0	0	0	1	0	0	16486	1124	39	1	708	1	TP53	17	7578263	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	349562	7578263	73616947	801	3967											
CHD3	1107	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7814222	7814222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggggcggccttcagcgccGcacccgtaggggccctggcc	16	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	7814222	G	A	7814222	3	1	43	1	0	0	0	0	1	0	0	0	3355	1087	38	1	6247	1	CHD3	17	7814222	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	235959	7814222	73380988	802	3968											
PER1	5187	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr17	8044491	8044491	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcttgaagccttggccccGccttgggcctcctcgcagcc	12	17	0	1	rs199916672		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	8044491	G	A	8044491	2	1	43	1	0	0	0	0	0	0	0	1	11808	1074	38	1		1	PER1	17	8044491	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	230269	8044491	73150719	803	3969											
MYH13	8735	ucsc.edu;mdanderson.org	37	chr17	10267836	10267836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaatggccatttctgcGtcagagctcatgactgcaga	9	11	3	3	rs34042358	alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	10267836	G	A	10267836	2	1	43	1	0	0	0	0	0	0	0	1	10110	1136	40	1		1	MYH13	17	10267836	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2223345	10267836	70927374	804	3970											
ELAC2	60528	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	12896262	12896262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcacctgccgcagctccCgcttctccctgcgctcctcc	7	24	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	12896262	C	T	12896262	3	4	43	1	0	0	0	0	1	0	0	0	5086	652	23	1	130	1	ELAC2	17	12896262	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2628426	12896262	68298948	805	3971											
MED9	55090	ucsc.edu	37	chr17	17380564	17380564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctttttacctttggttcAcaacatcatcaaatggtaag	5	10	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	17380564	A	G	17380564	3	3	43	1	0	0	0	0	1	0	0	0	9531	159	6	2	211	2	MED9	17	17380564	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	4484302	17380564	63814646	806	3972											
MYO15A	51168	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	18052173	18052173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctacgtgttagacctggtgtCggacctggagctgctcaggg	15	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	18052173	C	T	18052173	3	4	43	1	0	0	0	0	1	0	0	0	10141	893	31	1	6985	1	MYO15A	17	18052173	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	671609	18052173	63143037	807	3973											
SLC5A10	125206	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	18923133	18923133	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccagacacgcggccagcCgtcctggggagcatccacta	13	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	18923133	C	T	18923133	2	4	43	1	0	0	0	0	0	0	0	1	14760	639	23	1		1	SLC5A10	17	18923133	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	870960	18923133	62272077	808	3974											
MYO18A	399687	broad.mit.edu	37	chr17	27423863	27423863	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcagctcagccgtcagtCgctggcacttcttcttgagc	10	14	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	27423863	C	T	27423863	3	4	43	1	0	0	0	0	1	0	0	0	10143	884	31	1	1923	1	MYO18A	17	27423863	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8500730	27423863	53771347	809	3975											
GIT1	28964	broad.mit.edu	37	chr17	27901911	27901911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcagccgcagtgagctccGcactggctccagggctggcc	15	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	27901911	G	A	27901911	3	1	43	1	0	0	0	0	1	0	0	0	6452	1086	38	1	194	1	GIT1	17	27901911	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	478048	27901911	53293299	810	3976											
NF1	4763	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	29653046	29653046	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagtctatatctataacTgtaactcctgggtcagggag	10	10	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	29653046	T	C	29653046	3	2	43	1	0	0	0	0	1	0	0	0	10435	1580	55	2	5251	2	NF1	17	29653046	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1751135	29653046	51542164	811	3977											
GPR179	440435	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr17	36499408	36499408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taggcttggggggagccctgGcatggctcctgccccacgcg	16	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36499408	G	A	36499408	3	1	43	1	0	0	0	0	1	0	0	0	6731	1203	42	3	6882	3	GPR179	17	36499408	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6846362	36499408	44695802	812	3978											
SOCS7	30837	broad.mit.edu	37	chr17	36521270	36521270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtctttccccctacctccGcctcctccaccccatgcccc	3	25	1	0	rs149190855		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36521270	G	A	36521270	2	1	43	1	0	0	0	0	0	0	0	1	15017	1074	38	1		1	SOCS7	17	36521270	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	21862	36521270	44673940	813	3979											
GRB7	2886	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	37900401	37900401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggacggaagctttggaaaCgctttttctgcttcttgcgc	11	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	37900401	C	T	37900401	3	4	43	1	0	0	0	0	1	0	0	0	6817	536	19	1	764	1	GRB7	17	37900401	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1379131	37900401	43294809	814	3980											
RAPGEFL1	51195	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	38345215	38345215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagacccgggtggccttcCggggctctgatgagagtgag	17	10	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38345215	C	T	38345215	3	4	43	1	0	0	0	0	1	0	0	0	13141	643	23	1	323	1	RAPGEFL1	17	38345215	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	444814	38345215	42849995	815	3981											
RARA	5914	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	38512460	38512460	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccaacagaagcagcccGgccacccactccccgtgacc	8	20	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38512460	G	T	38512460	2	4	43	1	0	0	0	0	0	0	0	1	13144	1103	39	5		5	RARA	17	38512460	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	167245	38512460	42682750	816	3982											
TMEM99	147184	hgsc.bcm.edu;bcgsc.ca	37	chr17	38990812	38990812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgctccggctgtgtcccctCgctctgttgttccagctatg	10	14	1	0	rs189743949	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38990812	C	T	38990812	3	4	43	1	0	0	0	0	1	0	0	0	16330	893	31	1	46	1	TMEM99	17	38990812	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	478352	38990812	42204398	817	3983											
KRTAP9-9	81870	broad.mit.edu;mdanderson.org	37	chr17	39411913	39411913	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgggtccagctgctgtggCcaaaccagctgtgggtccag	15	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	39411913	C	T	39411913	2	4	43	1	0	0	0	0	0	0	0	1	8639	726	26	3		3	KRTAP9-9	17	39411913	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	421101	39411913	41783297	818	3984											
KRT15	3866	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	39673348	39673348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agcgcacttgagcctgaagtCgtccgcagccagcctggcat	12	14	0	2	rs147023381		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	39673348	C	T	39673348	3	4	43	1	0	0	0	0	1	0	0	0	8513	884	31	1	830	1	KRT15	17	39673348	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	261435	39673348	41521862	819	3985											
KIF18B	146909	broad.mit.edu;mdanderson.org	37	chr17	43004364	43004364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccaaacctcacctcgcaaCgcgcttcttcttgcaggcag	7	17	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	43004364	C	T	43004364	3	4	43	1	0	0	0	0	1	0	0	0	8342	536	19	1	210	1	KIF18B	17	43004364	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3331016	43004364	38190846	820	3986											
NOG	9241	broad.mit.edu;bcgsc.ca	37	chr17	54672235	54672235	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggggccagcgctgcggctgGattcccatccagtaccccat	13	15	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54672235	G	A	54672235	4	1	43	1	0	0	0	0	0	1	0	0	10598	1183	41	3	653	3	NOG	17	54672235	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	11667871	54672235	26522975	821	3987											
TRIM25	7706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	54985879	54985879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccagtgctctcgacgcccCgttgatctgactgtacatga	9	13	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	54985879	C	T	54985879	3	4	43	1	0	0	0	0	1	0	0	0	16604	652	23	1	1281	1	TRIM25	17	54985879	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	313644	54985879	26209331	822	3988											
OR4D2	124538	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	56247381	56247381	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagtgatggcctttgaccGcctcattgccatctcccggc	9	16	3	2	rs142058863	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56247381	G	A	56247381	3	1	43	1	0	0	0	0	1	0	0	0	11135	1087	38	1	367	1	OR4D2	17	56247381	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1261502	56247381	24947829	823	3989											
OR4D2	124538	broad.mit.edu;bcgsc.ca	37	chr17	56247407	56247407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccatctcccggcccctcCgctatgtcaccgtcatgaac	7	18	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	56247407	C	T	56247407	3	4	43	1	0	0	0	0	1	0	0	0	11135	652	23	1	393	1	OR4D2	17	56247407	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	26	56247407	24947803	824	3990											
MKS1	54903	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	56290442	56290442	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcctgcttctccccctcCgtctcaatcctgtaaggtca	6	17	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	56290442	C	T	56290442	2	4	43	1	0	0	0	0	0	0	0	1	9686	639	23	1		1	MKS1	17	56290442	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43035	56290442	24904768	825	3991											
SEPT4	5414	ucsc.edu;bcgsc.ca	37	chr17	56599003	56599003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaatgctcaatctcctccCggatctgacaaacagatgag	7	12	3	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	56599003	C	T	56599003	3	4	43	1	0	0	0	0	1	0	0	0	14163	652	23	1	536	1	SEPT4	17	56599003	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	308561	56599003	24596207	826	3992											
BCAS3	54828	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr17	59445725	59445725	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaccctgctggaggtgtgCgggagctggcctgagggctt	19	9	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	59445725	C	T	59445725	2	4	43	1	0	0	0	0	0	0	0	1	1356	776	27	1		1	BCAS3	17	59445725	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2846722	59445725	21749485	827	3993											
TANC2	26115	broad.mit.edu	37	chr17	61497780	61497780	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtaggctctcccactagAcagacctatcagtccacctc	6	16	3	2	rs200208895		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	61497780	A	G	61497780	2	3	43	1	0	0	0	0	0	0	0	1	15646	272	10	2		2	TANC2	17	61497780	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2052055	61497780	19697430	828	3994											
TEX2	55852	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	62291323	62291323	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgaggcagcagggccggcGgggtcatggccaacttgggg	21	10	1	0	rs139320801		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	62291323	G	A	62291323	2	1	43	1	0	0	0	0	0	0	0	1	15885	1103	39	1		1	TEX2	17	62291323	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	793543	62291323	18903887	829	3995											
HELZ	9931	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	65134098	65134098	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcagataatctcttttttcGaagttcagcacgtattctaa	5	8	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	65134098	G	A	65134098	4	1	43	1	0	0	0	0	0	1	0	0	7107	1066	37	1	2974	1	HELZ	17	65134098	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2842775	65134098	16061112	830	3996											
KIF19	124602	mdanderson.org	37	chr17	72350412	72350412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcacccgcgacagagcGcagcagcctgtccctgcact	12	17	0	1	rs2271535	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	72350412	G	A	72350412	3	1	43	1	0	0	0	0	1	0	0	0	8343	1087	38	1	2490	1	KIF19	17	72350412	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7216314	72350412	8844798	831	3997											
RECQL5	9400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	73626346	73626346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctccacggccttggccCggaggtcagctctgtgggtg	15	14	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73626346	C	T	73626346	3	4	43	1	0	0	0	0	1	0	0	0	13295	652	23	1	1273	1	RECQL5	17	73626346	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1275934	73626346	7568864	832	3998											
RNF157	114804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	74157965	74157965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttggcctggtagcgcagcGtgtctgcacaggtgttacag	15	9	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	74157965	G	A	74157965	3	1	43	1	0	0	0	0	1	0	0	0	13549	1145	40	1	1168	1	RNF157	17	74157965	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	531619	74157965	7037245	833	3999											
MGAT5B	146664	broad.mit.edu;bcgsc.ca	37	chr17	74901299	74901299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctggacctgatgggcagcGggaaggagtccctgatcttc	14	10	2	2	rs199861646		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	74901299	G	A	74901299	3	1	43	1	0	0	0	0	1	0	0	0	9626	1116	39	1	866	1	MGAT5B	17	74901299	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	743334	74901299	6293911	834	4000											
SEPT9	10801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	75471796	75471796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatggaggcaaggaagtcttCgccggggcaagggcaccagc	17	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	75471796	C	T	75471796	3	4	43	1	0	0	0	0	1	0	0	0	14168	884	31	1	1016	1	SEPT9	17	75471796	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	570497	75471796	5723414	835	4001											
TNRC6C	57690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	76071339	76071339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaagagtcttccgtggacCgccccacctttcttgacaag	8	15	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	76071339	C	T	76071339	3	4	43	1	0	0	0	0	1	0	0	0	16446	652	23	1	3062	1	TNRC6C	17	76071339	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	599543	76071339	5123871	836	4002											
RNF213	57674	hgsc.bcm.edu;mdanderson.org	37	chr17	78318717	78318717	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgtcgaaggcaccccGgaggaatgcctccagcattt	12	13	1	0	rs140158248	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	78318717	G	A	78318717	2	1	43	1	0	0	0	0	0	0	0	1	13572	1103	39	1		1	RNF213	17	78318717	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2247378	78318717	2876493	837	4003											
RNF213	57674	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	78320904	78320904	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atctgctcctcagacatcctCgtccaggaccgagtccaagg	9	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	78320904	C	T	78320904	2	4	43	1	0	0	0	0	0	0	0	1	13572	871	31	1		1	RNF213	17	78320904	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2187	78320904	2874306	838	4004											
SLC38A10	124565	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	79226231	79226231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttcaggaagatcacccGcctcctccaaggcctgggcc	10	16	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	79226231	G	A	79226231	3	1	43	1	0	0	0	0	1	0	0	0	14700	1087	38	1	1944	1	SLC38A10	17	79226231	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	905327	79226231	1968979	839	4005											
C17orf70	80233	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr17	79512906	79512906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcacagcacaggggcaCgcctggaggggaggcatcag	19	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	79512906	C	T	79512906	3	4	43	1	0	0	0	0	1	0	0	0	1892	536	19	1	485	1	C17orf70	17	79512906	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	286675	79512906	1682304	840	4006											
HGS	9146	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	79663491	79663491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagcttcgccgggcagccGaggaggcagagcgccagcgc	17	13	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	79663491	G	A	79663491	3	1	43	1	0	0	0	0	1	0	0	0	7145	1059	37	1	1560	1	HGS	17	79663491	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	150585	79663491	1531719	841	4007											
USP14	9097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr18	198072	198072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctcatctgcatcggcagCgacaccttctaaaaagaaaa	6	13	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	198072	C	T	198072	3	4	43	1	0	0	0	0	1	0	0	0	17151	768	27	1	735	1	USP14	18	198072	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		198072	77879176	842	4008											
THOC1	9984	broad.mit.edu;mdanderson.org	37	chr18	216576	216576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggctggaagaagtgaggGcttctccgtgctaatagtct	14	7	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	216576	G	A	216576	2	1	43	1	0	0	0	0	0	0	0	1	15968	1194	42	3		3	THOC1	18	216576	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	18504	216576	77860672	843	4009											
NDC80	10403	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	2610781	2610781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaactagttgtgcaaaccaCgactgaagaaagacgaaaag	9	9	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2610781	C	T	2610781	3	4	43	1	0	0	0	0	1	0	0	0	10321	536	19	1	1770	1	NDC80	18	2610781	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2394205	2610781	75466467	844	4010											
ROCK1	6093	broad.mit.edu;mdanderson.org	37	chr18	18533573	18533573	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatttttgaccactttccGgaaagactgatttgcagtgg	10	7	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	18533573	G	A	18533573	3	1	43	1	0	0	0	0	1	0	0	0	13612	1115	39	1	45	1	ROCK1	18	18533573	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	15922792	18533573	59543675	845	4011											
LAMA3	3909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr18	21474920	21474920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgacctggccaccatgggCgagcagctccgcctggtcaa	12	15	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	21474920	C	T	21474920	2	4	43	1	0	0	0	0	0	0	0	1	8669	755	27	1		1	LAMA3	18	21474920	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2941347	21474920	56602328	846	4012											
DSG4	147409	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	28972125	28972125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttgcattttagtactcagCcagtattgaagagaattgtt	8	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	28972125	C	T	28972125	3	4	43	1	0	0	0	0	1	0	0	0	4816	739	26	3	857	3	DSG4	18	28972125	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	7497205	28972125	49105123	847	4013											
TCEB3C	162699	broad.mit.edu	37	chr18	44554924	44554924	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcggatcggattttcgtggtCactactcgcagccgctgctc	12	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	44554924	C	T	44554924	2	4	43	1	0	0	0	0	0	0	0	1	15787	813	29	4		4	TCEB3C	18	44554924	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	15582799	44554924	33522324	848	4014											
TCEB3B	51224	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	44561229	44561229	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtctctgttgccccggaGgtgttctgcgtgctgtccgt	15	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	44561229	G	T	44561229	3	4	43	1	0	0	0	0	1	0	0	0	15786	1000	35	5	1858	5	TCEB3B	18	44561229	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6305	44561229	33516019	849	4015											
ZBTB7C	201501	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	45567082	45567082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcatcctcctccccccCgtcccccccaggctccatga	5	23	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	45567082	C	T	45567082	3	4	43	1	0	0	0	0	1	0	0	0	17660	652	23	1	1470	1	ZBTB7C	18	45567082	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1005853	45567082	32510166	850	4016											
MYO5B	4645	mdanderson.org	37	chr18	47363927	47363927	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaagagcagacgtccttccGcaagagcaggttgttaagag	12	10	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	47363927	G	A	47363927	3	1	43	1	0	0	0	0	1	0	0	0	10157	1086	38	1	464	1	MYO5B	18	47363927	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1796845	47363927	30713321	851	4017											
WDR7	23335	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr18	54358459	54358459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcaggtgttcgatgccGgagactattccttgttgtgt	12	9	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54358459	G	A	54358459	3	1	43	1	0	0	0	0	1	0	0	0	17426	1117	39	1	756	1	WDR7	18	54358459	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6994532	54358459	23718789	852	4018											
WDR7	23335	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	54591323	54591323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgaactttgtgccgatgccGagaaacaacttgccaagtat	9	10	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54591323	G	A	54591323	3	1	43	1	0	0	0	0	1	0	0	0	17426	1059	37	1	3779	1	WDR7	18	54591323	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	232864	54591323	23485925	853	4019											
ALPK2	115701	broad.mit.edu	37	chr18	56191246	56191246	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taatagagtccctggtccttCggactggcttgcacgatggc	12	11	0	1	rs145864025	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	56191246	C	T	56191246	2	4	43	1	0	0	0	0	0	0	0	1	545	871	31	1		1	ALPK2	18	56191246	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1599923	56191246	21886002	854	4020											
DOK6	220164	bcgsc.ca	37	chr18	67406218	67406218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaatgtgtgacacaggagAaggactattcacttttcaaa	9	7	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	67406218	A	G	67406218	3	3	43	1	0	0	0	0	1	0	0	0	4738	246	9	4	639	4	DOK6	18	67406218	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	11214972	67406218	10671030	855	4021											
ATP9B	374868	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	76886295	76886295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggctgttactatgacacGggaagcaattgatgaatttc	10	7	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	76886295	G	A	76886295	3	1	43	1	0	0	0	0	1	0	0	0	1203	1116	39	1	605	1	ATP9B	18	76886295	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	9480077	76886295	1190953	856	4022											
NFATC1	4772	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	chr18	77170445	77170445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacgtcagccccgccctgcCgctccccacggcgcactcca	8	23	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	77170445	C	T	77170445	3	4	43	1	0	0	0	0	1	0	0	0	10440	652	23	1	268	1	NFATC1	18	77170445	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	284150	77170445	906803	857	4023											
BSG	682	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	579590	579590	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgccacagaggtcacagggcAccgctggctgaaggggggcg	18	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	579590	A	G	579590	3	3	43	1	0	0	0	0	1	0	0	0	1537	159	6	2	552	2	BSG	19	579590	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10		579590	58549393	858	4024											
SBNO2	22904	hgsc.bcm.edu;mdanderson.org	37	chr19	1116900	1116900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgcgtgcgcgcctcgcccGtggactgcagcccgatgacc	13	19	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1116900	G	A	1116900	3	1	43	1	0	0	0	0	1	0	0	0	13959	1145	40	1	2438	1	SBNO2	19	1116900	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	537310	1116900	58012083	859	4025											
SBNO2	22904	mdanderson.org	37	chr19	1116911	1116911	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgcccgtggactgcagCccgatgaccacgcactgtgg	13	16	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	1116911	C	T	1116911	2	4	43	1	0	0	0	0	0	0	0	1	13959	726	26	3		3	SBNO2	19	1116911	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11	1116911	58012072	860	4026											
TCF3	6929	hgsc.bcm.edu	37	chr19	1621856	1621856	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggaggctgtcggccccGctgacaggcggcgtgtggct	17	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1621856	G	A	1621856	2	1	43	1	0	0	0	0	0	0	0	1	15798	1078	38	1		1	TCF3	19	1621856	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	504945	1621856	57507127	861	4027											
FAM108A1	81926	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	1881247	1881247	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcacctggcaccaggcaCgcagcgaacatacatgcagg	11	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	1881247	C	T	1881247	3	4	43	1	0	0	0	0	1	0	0	0	5434	536	19	1	786	1	FAM108A1	19	1881247	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	259391	1881247	57247736	862	4028											
AMH	268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	2249496	2249496	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccacaagagcctctgtgCctggtggcactgggcgggga	16	12	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2249496	C	T	2249496	2	4	43	1	0	0	0	0	0	0	0	1	572	747	26	3		3	AMH	19	2249496	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	368249	2249496	56879487	863	4029											
TMPRSS9	360200	hgsc.bcm.edu;mdanderson.org	37	chr19	2425067	2425067	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcggcgcggaggggcagCtggagcgcgtggcgcgcatc	21	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2425067	C	T	2425067	2	4	43	1	0	0	0	0	0	0	0	1	16357	796	28	4		4	TMPRSS9	19	2425067	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	175571	2425067	56703916	864	4030											
SGTA	6449	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	2757763	2757763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaaggggttgttgccacccGaaatcatgccggacatgctg	12	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	2757763	G	A	2757763	3	1	43	1	0	0	0	0	1	0	0	0	14322	1059	37	1	194	1	SGTA	19	2757763	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	332696	2757763	56371220	865	4031											
S1PR4	8698	broad.mit.edu	37	chr19	3179323	3179323	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggccgcgctgctggggaTgctgcctttgctgggctgga	18	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	3179323	T	G	3179323	3	3	43	1	0	0	0	0	1	0	0	0	13891	1464	51	5	535	5	S1PR4	19	3179323	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	421560	3179323	55949660	866	4032											
TBXA2R	6915	hgsc.bcm.edu	37	chr19	3595775	3595775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctggagacgccggagcaCggcgcggcggaacaggatat	18	10	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	3595775	C	T	3595775	3	4	43	1	0	0	0	0	1	0	0	0	15767	536	19	1	337	1	TBXA2R	19	3595775	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	416452	3595775	55533208	867	4033											
CHAF1A	10036	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	4409549	4409549	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttggctgtgagaccaccGcaaatcaagtcccttccagc	8	14	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	4409549	G	A	4409549	2	1	43	1	0	0	0	0	0	0	0	1	3340	1074	38	1		1	CHAF1A	19	4409549	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	813774	4409549	54719434	868	4034											
PLIN4	729359	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	4511019	4511019	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cataagcacagccttggaggCgtccacgccggtctgcacgg	13	14	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	4511019	C	T	4511019	3	4	43	1	0	0	0	0	1	0	0	0	12172	768	27	1	1178	1	PLIN4	19	4511019	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	101470	4511019	54617964	869	4035											
LONP1	9361	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	5707746	5707746	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcctgcagctcatgggactCggccccggtgagcgcggcgc	16	15	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	5707746	C	T	5707746	3	4	43	1	0	0	0	0	1	0	0	0	8964	893	31	1	1907	1	LONP1	19	5707746	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1196727	5707746	53421237	870	4036											
FUT6	2528	broad.mit.edu	37	chr19	5832569	5832569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggcttggccgggcccaGgggatccatgggtcagagta	17	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	5832569	G	T	5832569	3	4	43	1	0	0	0	0	1	0	0	0	6160	991	35	5	1073	5	FUT6	19	5832569	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	124823	5832569	53296414	871	4037											
GPR108	56927	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	6733232	6733232	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcggccaggaagcaggcGgacatgaccatgtagagctt	14	11	0	2	rs77003966	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	6733232	G	A	6733232	2	1	43	1	0	0	0	0	0	0	0	1	6681	1103	39	1		1	GPR108	19	6733232	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	900663	6733232	52395751	872	4038											
ARHGEF18	23370	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	7505040	7505040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacagcgcgctccccggcCgccccgagctgtctttttac	11	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7505040	C	T	7505040	3	4	43	1	0	0	0	0	1	0	0	0	903	652	23	1	216	1	ARHGEF18	19	7505040	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	771808	7505040	51623943	873	4039											
ARHGEF18	23370	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	7521290	7521290	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatacgtctttgcttctgtgGtatgtatcctgtctcttcag	8	9	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	7521290	G	A	7521290	5	1	43	1	0	0	0	0	0	0	1	0	903	1275	44	3	1648	3	ARHGEF18	19	7521290	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	16250	7521290	51607693	874	4040											
PNPLA6	10908	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	chr19	7606949	7606949	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctccatgccaggggacatCtcaggtttggagcactgggt	14	10	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	7606949	C	T	7606949	2	4	43	1	0	0	0	0	0	0	0	1	12249	903	32	4		4	PNPLA6	19	7606949	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	85659	7606949	51522034	875	4041											
FBN3	84467	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	8201286	8201286	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcaccaatgcactcgccgCgcacgtcctgggtgtagccc	11	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8201286	C	T	8201286	3	4	43	1	0	0	0	0	1	0	0	0	5753	768	27	1	7314	1	FBN3	19	8201286	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	594337	8201286	50927697	876	4042											
FBN3	84467	broad.mit.edu	37	chr19	8209801	8209801	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagccatacacacaggcGcagcggttgggcccaatgca	12	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	8209801	G	A	8209801	2	1	43	1	0	0	0	0	0	0	0	1	5753	1079	38	1		1	FBN3	19	8209801	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8515	8209801	50919182	877	4043											
MYO1F	4542	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	8592315	8592315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcccttcttcactttctctCgcccaatcacatacacacac	2	18	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	8592315	C	T	8592315	3	4	43	1	0	0	0	0	1	0	0	0	10151	884	31	1	943	1	MYO1F	19	8592315	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	382514	8592315	50536668	878	4044											
OLFM2	93145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	9967485	9967485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcgcagtcactcacccGgctatccgcactgggggcca	14	15	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	9967485	G	A	9967485	3	1	43	1	0	0	0	0	1	0	0	0	10932	1115	39	1	687	1	OLFM2	19	9967485	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1375170	9967485	49161498	879	4045											
DNMT1	1786	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	10246467	10246467	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaggtgtcagggaagcccTgggagcgggcacactcccgc	17	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	10246467	T	C	10246467	3	2	43	1	0	0	0	0	1	0	0	0	4712	1580	55	2	192	2	DNMT1	19	10246467	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	278982	10246467	48882516	880	4046											
ICAM4	3386	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	10398019	10398019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagggcctggagctccctcGcgcactgcctcgtgacctgc	13	16	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	10398019	G	A	10398019	3	1	43	1	0	0	0	0	1	0	0	0	7543	1087	38	1	333	1	ICAM4	19	10398019	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	151552	10398019	48730964	881	4047											
TYK2	7297	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	10477123	10477123	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccacctcctccagggggAtgccatggcggagagcgagg	17	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	10477123	A	G	10477123	3	3	43	1	0	0	0	0	1	0	0	0	16916	333	12	4	3044	4	TYK2	19	10477123	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	79104	10477123	48651860	882	4048											
AP1M2	10053	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	10692022	10692022	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaaacaccttgagcttgAtggtaccgacgatttcgctc	9	11	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	10692022	A	G	10692022	3	3	43	1	0	0	0	0	1	0	0	0	737	333	12	4	706	4	AP1M2	19	10692022	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	214899	10692022	48436961	883	4049											
ILF3	3609	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	10794618	10794618	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtatggaagctatgggtaCggaggcaactcggcgacagc	17	8	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	10794618	C	T	10794618	2	4	43	1	0	0	0	0	0	0	0	1	7773	547	19	1		1	ILF3	19	10794618	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	102596	10794618	48334365	884	4050											
QTRT1	81890	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	10818003	10818003	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatcatcatgcagctggaCgacgtggttagcagtactgt	12	9	2	0	rs151104617		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	10818003	C	T	10818003	2	4	43	1	0	0	0	0	0	0	0	1	12977	535	19	1		1	QTRT1	19	10818003	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	23385	10818003	48310980	885	4051											
TMEM205	374882	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	11453630	11453630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtacttggggtccttctctCgcagctggcggtagggatcg	15	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	11453630	C	T	11453630	3	4	43	1	0	0	0	0	1	0	0	0	16234	884	31	1	142	1	TMEM205	19	11453630	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	635627	11453630	47675353	886	4052											
ELAVL3	1995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	11568980	11568980	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcttctgacttgggttgttCgcgaacttgactgtgatggg	14	7	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	11568980	C	T	11568980	2	4	43	1	0	0	0	0	0	0	0	1	5090	871	31	1		1	ELAVL3	19	11568980	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	115350	11568980	47560003	887	4053											
ZNF653	115950	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	11598527	11598527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcggccaggctttccaCgtggtggacgtcaaagggaa	14	11	1	0	rs140179197	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	11598527	C	T	11598527	3	4	43	1	0	0	0	0	1	0	0	0	18171	536	19	1	1120	1	ZNF653	19	11598527	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	29547	11598527	47530456	888	4054											
ZNF441	126068	broad.mit.edu	37	chr19	11891522	11891522	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttatcatcttggaagcTttcaaagacacatgatagtg	7	7	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	11891522	T	G	11891522	3	3	43	1	0	0	0	0	1	0	0	0	18019	1609	56	5	897	5	ZNF441	19	11891522	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	292995	11891522	47237461	889	4055											
ZNF441	126068	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	11892622	11892622	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagtgcctttcataaacaTgaaaggacccacagtatgga	8	11	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	11892622	T	C	11892622	2	2	43	1	0	0	0	0	0	0	0	1	18019	1461	51	4		4	ZNF441	19	11892622	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1100	11892622	47236361	890	4056											
ZNF878	729747	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	12155144	12155144	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctccagtgtgtgtcctttCatgtattcgaagatccttga	8	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	12155144	C	T	12155144	3	4	43	1	0	0	0	0	1	0	0	0	18299	835	29	4	527	4	ZNF878	19	12155144	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	262522	12155144	46973839	891	4057											
ZNF799	90576	bcgsc.ca	37	chr19	12502787	12502787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttcccacgttgtttatgcGtatctggcttctctccacat	6	13	2	0	rs12974755	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	12502787	G	A	12502787	3	1	43	1	0	0	0	0	1	0	0	0	18269	1145	40	1	1510	1	ZNF799	19	12502787	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	347643	12502787	46626196	892	4058											
ZNF709	163051	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	12574914	12574914	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctctccagtgtgagttcGttcatggattcgaaaggaac	10	8	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	12574914	G	A	12574914	4	1	43	1	0	0	0	0	0	1	0	0	18218	1153	40	1	107	1	ZNF709	19	12574914	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	72127	12574914	46554069	893	4059											
TNPO2	30000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	12812988	12812988	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcagagggactcgtcaggCgacctgcaaccccgagcggc	15	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	12812988	C	T	12812988	3	4	43	1	0	0	0	0	1	0	0	0	16440	768	27	1	400	1	TNPO2	19	12812988	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	238074	12812988	46315995	894	4060											
BEST2	54831	broad.mit.edu	37	chr19	12865478	12865478	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacggacgcgacgaccgCggccgcctctaccggcgcac	14	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	12865478	C	T	12865478	2	4	43	1	0	0	0	0	0	0	0	1	1409	755	27	1		1	BEST2	19	12865478	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	52490	12865478	46263505	895	4061											
NFIX	4784	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	13183866	13183866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtctcctgcagaatccGgacaatcagatagttcaaac	8	10	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	13183866	G	A	13183866	3	1	43	1	0	0	0	0	1	0	0	0	10453	1117	39	1	575	1	NFIX	19	13183866	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	318388	13183866	45945117	896	4062											
NFIX	4784	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	13186460	13186460	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggcagcagccagtccagCgggtggcccaacgatgtgga	16	12	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	13186460	C	T	13186460	2	4	43	1	0	0	0	0	0	0	0	1	10453	767	27	1		1	NFIX	19	13186460	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2594	13186460	45942523	897	4063											
NACC1	112939	broad.mit.edu;bcgsc.ca	37	chr19	13248350	13248350	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttctaccaacgatccccgtCggaagcccctggacagccgc	9	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	13248350	C	T	13248350	3	4	43	1	0	0	0	0	1	0	0	0	10213	875	31	1	1299	1	NACC1	19	13248350	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	61890	13248350	45880633	898	4064											
ZSWIM4	65249	mdanderson.org	37	chr19	13936443	13936443	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctgctctttaagctggcGcaggacgcctgcaagacagc	12	14	1	1	rs202144110		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	13936443	G	A	13936443	2	1	43	1	0	0	0	0	0	0	0	1	18344	1074	38	1		1	ZSWIM4	19	13936443	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	688093	13936443	45192540	899	4065											
LPHN1	22859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	14268815	14268815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accagtagcccagcatggaaCgctccgagtagttccagaag	11	12	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	14268815	C	T	14268815	3	4	43	1	0	0	0	0	1	0	0	0	8987	536	19	1	2039	1	LPHN1	19	14268815	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	332372	14268815	44860168	900	4066											
LPHN1	22859	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	14273936	14273936	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatacttgacgatgttgCgcgtgcgctccttgttgtag	13	9	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	14273936	C	T	14273936	3	4	43	1	0	0	0	0	1	0	0	0	8987	768	27	1	3808	1	LPHN1	19	14273936	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	5121	14273936	44855047	901	4067											
SLC1A6	6511	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	15063793	15063793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccgtgggcaagccgacCgacgtaagcacaatgaccat	10	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	15063793	C	T	15063793	2	4	43	1	0	0	0	0	0	0	0	1	14534	639	23	1		1	SLC1A6	19	15063793	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	789857	15063793	44065190	902	4068											
NOTCH3	4854	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	15297722	15297722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggcagacacagtcgtagcGgttgatgccatcacggcaga	13	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	15297722	G	A	15297722	3	1	43	1	0	0	0	0	1	0	0	0	10629	1116	39	1	5135	1	NOTCH3	19	15297722	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	233929	15297722	43831261	903	4069											
CYP4F3	4051	broad.mit.edu	37	chr19	15752327	15752327	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctggctcctggcccgcatCctggcctggacctatacctt	9	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	15752327	C	A	15752327	2	1	43	1	0	0	0	0	0	0	0	1	4221	845	30	5		5	CYP4F3	19	15752327	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	454605	15752327	43376656	904	4070											
AP1M1	8907	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	16345014	16345014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctacctgtgccccaggtgcGctacctgaagatcattgaga	11	12	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	16345014	G	A	16345014	3	1	43	1	0	0	0	0	1	0	0	0	736	1087	38	1	1260	1	AP1M1	19	16345014	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	592687	16345014	42783969	905	4071											
SIN3B	23309	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	16976291	16976291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcagaagaagctatctcGgatggcgccggaagaccagg	15	9	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	16976291	G	A	16976291	3	1	43	1	0	0	0	0	1	0	0	0	14424	1116	39	1	1596	1	SIN3B	19	16976291	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	631277	16976291	42152692	906	4072											
HAPLN4	404037	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	19369385	19369385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgttcctcggcgttatggCgatacccgtagttgcgcagg	14	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	19369385	C	T	19369385	3	4	43	1	0	0	0	0	1	0	0	0	7015	768	27	1	452	1	HAPLN4	19	19369385	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2393094	19369385	39759598	907	4073											
ZNF737	100129842	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	20735292	20735292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcacctacctgaggggttgGctaccatctcatgtttcttc	9	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	20735292	G	A	20735292	3	1	43	1	0	0	0	0	1	0	0	0	18230	1203	42	3	1403	3	ZNF737	19	20735292	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1365907	20735292	38393691	908	4074											
ANKRD27	84079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	33137475	33137475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcactgagagaagacagGcaaaaccagctcctaattta	10	9	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	33137475	G	A	33137475	3	1	43	1	0	0	0	0	1	0	0	0	655	1203	42	3	2996	3	ANKRD27	19	33137475	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	12402183	33137475	25991508	909	4075											
WDR88	126248	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	33666433	33666433	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcgtcatcatcatcatcGgaaagggagaactcaccgcc	8	13	6	1	rs145406953		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	33666433	G	A	33666433	2	1	43	1	0	0	0	0	0	0	0	1	17441	1103	39	1		1	WDR88	19	33666433	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	528958	33666433	25462550	910	4076											
WTIP	126374	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	34984440	34984440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccacccaggctgcttccGgtgctccgtgtgcaatgagt	11	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	34984440	G	A	34984440	3	1	43	1	0	0	0	0	1	0	0	0	17516	1116	39	1	962	1	WTIP	19	34984440	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1318007	34984440	24144543	911	4077											
FFAR2	2867	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	35941487	35941487	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggagagggctgcaggtgCtgcggaatcagggctcctcc	17	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	35941487	C	T	35941487	2	4	43	1	0	0	0	0	0	0	0	1	5877	796	28	4		4	FFAR2	19	35941487	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	957047	35941487	23187496	912	4078											
RBM42	79171	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	36120479	36120479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcccaactgctgtgcctgcGgtgcccactgtccccacggt	10	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36120479	G	A	36120479	2	1	43	1	0	0	0	0	0	0	0	1	13228	1103	39	1		1	RBM42	19	36120479	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	178992	36120479	23008504	913	4079											
MLL4	8085	broad.mit.edu	37	chr19	36210431	36210431	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccctgcgctctgcgctcCgatcccagcgaggtgagtga	13	14	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	36210431	C	T	36210431	4	4	43	1	0	0	0	0	0	1	0	0	9700	644	23	1	430	1	MLL4	19	36210431	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	89952	36210431	22918552	914	4080											
MLL4	8085	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	36210898	36210898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtgagccctccacccccCggcggtctcggggacggccc	13	19	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	36210898	C	T	36210898	3	4	43	1	0	0	0	0	1	0	0	0	9700	643	23	1	659	1	MLL4	19	36210898	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	467	36210898	22918085	915	4081											
C19orf55	148137	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	36255795	36255795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccctgctggacctggagaCgctgagcctacagagcagag	13	12	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	36255795	C	T	36255795	3	4	43	1	0	0	0	0	1	0	0	0	1955	536	19	1	606	1	C19orf55	19	36255795	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	44897	36255795	22873188	916	4082											
ARHGAP33	115703	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	36279135	36279135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtacccctcatagggtgcCgggtccctggggccctcctg	13	17	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	36279135	C	T	36279135	3	4	43	1	0	0	0	0	1	0	0	0	884	652	23	1	3750	1	ARHGAP33	19	36279135	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	23340	36279135	22849848	917	4083											
KIRREL2	84063	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	36349605	36349605	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccccaaatccaccttgcaGtccccccagaagccccccag	6	21	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36349605	G	A	36349605	5	1	43	1	0	0	0	0	0	0	1	0	8386	1043	36	4	375	4	KIRREL2	19	36349605	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	70470	36349605	22779378	918	4084											
WDR62	284403	broad.mit.edu	37	chr19	36592604	36592604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgacctggagtgcagcttcGcagccatccactccccagct	9	18	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	36592604	G	A	36592604	3	1	43	1	0	0	0	0	1	0	0	0	17419	1087	38	1	3108	1	WDR62	19	36592604	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	242999	36592604	22536379	919	4085											
ZNF569	148266	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	37916858	37916858	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacatcaggtttggtgaaCggatagcctgtcaaagggaa	12	7	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	37916858	C	T	37916858	2	4	43	1	0	0	0	0	0	0	0	1	18105	523	19	1		1	ZNF569	19	37916858	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1324254	37916858	21212125	920	4086											
RASGRP4	115727	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	38901988	38901988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actgacaccccactcaccccGacagcggtagccttgcttgg	9	17	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	38901988	G	A	38901988	3	1	43	1	0	0	0	0	1	0	0	0	13169	1057	37	1	323	1	RASGRP4	19	38901988	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	985130	38901988	20226995	921	4087											
MAP4K1	11184	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	39090577	39090577	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccagacctgagagagacaTgagaacgttgttgatggagt	14	6	0	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	39090577	T	C	39090577	3	2	43	1	0	0	0	0	1	0	0	0	9336	1464	51	4	950	4	MAP4K1	19	39090577	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	188589	39090577	20038406	922	4088											
ZFP36	7538	bcgsc.ca	37	chr19	39899072	39899072	+	Frame_Shift_Del	DEL	C	C	-													ttctctgctgcccctggcacCcccctggctcgaagagaccc					novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		-	39899072	C	-	39899072	7	5	43	1	0	1	0	1	0	0	0	0	17750	610	22	0	720	0	ZFP36	19	39899072	Frame_Shift_Del	DEL	C	TCGA-KN-8428-01A-11D-2310-10	808495	39899072	19229911	923	4089											
FCGBP	8857	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	40366434	40366434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcgtacgccgccggcacGcgcaggcgcacgaagctgtc	15	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	40366434	G	A	40366434	2	1	43	1	0	0	0	0	0	0	0	1	5827	1074	38	1		1	FCGBP	19	40366434	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	467362	40366434	18762549	924	4090											
FCGBP	8857	broad.mit.edu;mdanderson.org	37	chr19	40368741	40368741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atagctgctggggagcgtcaCgtctacccgccagttccagt	12	13	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	40368741	C	T	40368741	3	4	43	1	0	0	0	0	1	0	0	0	5827	536	19	1	3646	1	FCGBP	19	40368741	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2307	40368741	18760242	925	4091											
CNTD2	79935	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	40730407	40730407	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtacctcgggaagcacGcactcttccattttgcacgc	10	13	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	40730407	G	A	40730407	2	1	43	1	0	0	0	0	0	0	0	1	3665	1079	38	1		1	CNTD2	19	40730407	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	361666	40730407	18398576	926	4092											
SPTBN4	57731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	41072217	41072217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaggccttccgcaaagcGgctgcagcctgggaagagag	15	11	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	41072217	G	A	41072217	2	1	43	1	0	0	0	0	0	0	0	1	15221	1103	39	1		1	SPTBN4	19	41072217	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	341810	41072217	18056766	927	4093											
ADCK4	79934	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	41198899	41198899	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgaggtccctggacttcTgcaggacacagtctctgtct	10	11	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	41198899	T	C	41198899	3	2	43	1	0	0	0	0	1	0	0	0	290	1580	55	2	389	2	ADCK4	19	41198899	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	126682	41198899	17930084	928	4094											
POU2F2	5452	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	42600329	42600329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcggggtgggatggtgGctccaagcatttggggggct	18	9	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42600329	G	A	42600329	3	1	43	1	0	0	0	0	1	0	0	0	12352	1203	42	3	899	3	POU2F2	19	42600329	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1401430	42600329	16528654	929	4095											
ZNF526	116115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	42729973	42729973	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccccctgaacggcgtcaccGctgtggggtttgtggcaagg	16	12	1	1	rs149858475		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42729973	G	A	42729973	3	1	43	1	0	0	0	0	1	0	0	0	18072	1087	38	1	1420	1	ZNF526	19	42729973	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	129644	42729973	16399010	930	4096											
ERF	2077	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	42754628	42754628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctggtactcctccttccGcagcagctccaggataaagt	9	15	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42754628	G	A	42754628	3	1	43	1	0	0	0	0	1	0	0	0	5260	1086	38	1	1546	1	ERF	19	42754628	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	24655	42754628	16374355	931	4097											
MEGF8	1954	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	42861000	42861000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcccaggcccatcgccccGctccttccatgcagccgcat	10	20	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42861000	G	A	42861000	3	1	43	1	0	0	0	0	1	0	0	0	9540	1087	38	1	4598	1	MEGF8	19	42861000	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	106372	42861000	16267983	932	4098											
LYPD3	27076	hgsc.bcm.edu;ucsc.edu	37	chr19	43965542	43965542	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacggccaacagaagggcTgccaatccagctgtgggagc	14	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	43965542	T	C	43965542	2	2	43	1	0	0	0	0	0	0	0	1	9184	1567	55	2		2	LYPD3	19	43965542	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1104542	43965542	15163441	933	4099											
ZNF234	10780	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	44661482	44661482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatgtggtaaagccttccGtcagagttcatatcttaaaa	8	7	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44661482	G	A	44661482	3	1	43	1	0	0	0	0	1	0	0	0	17892	1145	40	1	1327	1	ZNF234	19	44661482	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	695940	44661482	14467501	934	4100											
CEACAM16	388551	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	45207383	45207383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagccccagccccaccGccgaggtccgctggttcttc	11	19	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	45207383	G	A	45207383	3	1	43	1	0	0	0	0	1	0	0	0	3217	1087	38	1	488	1	CEACAM16	19	45207383	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	545901	45207383	13921600	935	4101											
BCL3	602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45262838	45262838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccgaggccctggccggcCggtgcccccctccccagctc	11	23	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	45262838	C	T	45262838	3	4	43	1	0	0	0	0	1	0	0	0	1379	652	23	1	1365	1	BCL3	19	45262838	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	55455	45262838	13866145	936	4102											
PVRL2	5819	broad.mit.edu	37	chr19	45375403	45375403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctgtgaccctctctgtaCgctgtgagtgtatcgggggt	13	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	45375403	C	T	45375403	3	4	43	1	0	0	0	0	1	0	0	0	12932	536	19	1	782	1	PVRL2	19	45375403	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	112565	45375403	13753580	937	4103											
TOMM40	10452	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	45397308	45397308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccctggggaacccagacGtcctcgtgggttcaggtaag	13	12	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	45397308	G	A	45397308	3	1	43	1	0	0	0	0	1	0	0	0	16462	1145	40	1	646	1	TOMM40	19	45397308	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	21905	45397308	13731675	938	4104											
RSPH6A	81492	broad.mit.edu;ucsc.edu	37	chr19	46308230	46308230	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggccgacgccggcctgctcGaagtagaaggcagtctccat	13	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	46308230	G	A	46308230	2	1	43	1	0	0	0	0	0	0	0	1	13802	1049	37	1		1	RSPH6A	19	46308230	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	910922	46308230	12820753	939	4105											
GRIN2D	2906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	48945611	48945611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctggggcccacccaccGcatggacttcctgctggcct	11	18	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48945611	G	A	48945611	3	1	43	1	0	0	0	0	1	0	0	0	6840	1087	38	1	2687	1	GRIN2D	19	48945611	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2637381	48945611	10183372	940	4106											
LMTK3	114783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	49002432	49002432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccacggggcggtcccccGctcccccaagacctcggcag	11	21	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49002432	G	A	49002432	3	1	43	1	0	0	0	0	1	0	0	0	8924	1086	38	1	2508	1	LMTK3	19	49002432	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	56821	49002432	10126551	941	4107											
FUT2	2524	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	49206425	49206425	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgatcaatgcaataggccGcctggggaaccagatgggcg	15	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49206425	G	A	49206425	3	1	43	1	0	0	0	0	1	0	0	0	6156	1087	38	1	214	1	FUT2	19	49206425	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	203993	49206425	9922558	942	4108											
GYS1	2997	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	49473833	49473833	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttccagtccagaaggtcGgagaggcgctccgtgcggtt	14	10	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	49473833	G	A	49473833	2	1	43	1	0	0	0	0	0	0	0	1	6970	1103	39	1		1	GYS1	19	49473833	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	267408	49473833	9655150	943	4109											
NTF4	4909	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	49564657	49564657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggctgaggagtgtgcagaCgcaggcagtgtcaattcgaa	15	9	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49564657	C	T	49564657	3	4	43	1	0	0	0	0	1	0	0	0	10776	536	19	1	38	1	NTF4	19	49564657	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	90824	49564657	9564326	944	4110											
AP2A1	160	hgsc.bcm.edu	37	chr19	50305240	50305240	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gacctgcgcttcctacagtcGacgccctcgccctccgccga	9	20	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	50305240	G	A	50305240	2	1	43	1	0	0	0	0	0	0	0	1	741	1045	37	1		1	AP2A1	19	50305240	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	740583	50305240	8823743	945	4111											
ZNF473	25888	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	50548036	50548036	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcttctggaactccaatttCggagaagcctgtatagagga	12	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	50548036	C	T	50548036	2	4	43	1	0	0	0	0	0	0	0	1	18036	883	31	1		1	ZNF473	19	50548036	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	242796	50548036	8580947	946	4112											
MYH14	79784	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr19	50760714	50760714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccaaccccagttttgtcCgctgcattgtccccaaccac	5	18	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	50760714	C	T	50760714	3	4	43	1	0	0	0	0	1	0	0	0	10111	652	23	1	2269	1	MYH14	19	50760714	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	212678	50760714	8368269	947	4113											
LRRC4B	94030	broad.mit.edu	37	chr19	51021776	51021776	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatgagggtgccgttgggCgtcagccagttgacggaggt	18	8	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	51021776	C	T	51021776	2	4	43	1	0	0	0	0	0	0	0	1	9079	755	27	1		1	LRRC4B	19	51021776	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	261062	51021776	8107207	948	4114											
SIGLEC7	27036	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	51646040	51646040	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaattataaatatgaccaGctctctgtgaacgtgacagg	10	7	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	51646040	G	A	51646040	2	1	43	1	0	0	0	0	0	0	0	1	14411	962	34	4		4	SIGLEC7	19	51646040	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	624264	51646040	7482943	949	4115											
CD33	945	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	51738931	51738931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accacagggtcagcctccccGgtgagtgatggggcatcctg	14	13	1	2	rs111722079	bycluster	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	51738931	G	A	51738931	2	1	43	1	0	0	0	0	0	0	0	1	3034	1130	39	1		1	CD33	19	51738931	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	92891	51738931	7390052	950	4116											
HAS1	3036	hgsc.bcm.edu	37	chr19	52217097	52217097	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgccttggccagtgccacGccctgcacgcacagcagcac	11	19	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52217097	G	A	52217097	2	1	43	1	0	0	0	0	0	0	0	1	7019	1074	38	1		1	HAS1	19	52217097	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	478166	52217097	6911886	951	4117											
ZNF616	90317	broad.mit.edu;mdanderson.org	37	chr19	52619951	52619951	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcataaagtctcccttcagTttgaactttctgcagttcag	6	10	5	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	52619951	T	C	52619951	3	2	43	1	0	0	0	0	1	0	0	0	18146	1725	60	2	1883	2	ZNF616	19	52619951	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	402854	52619951	6509032	952	4118											
ZNF534	147658	broad.mit.edu	37	chr19	52941908	52941908	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaattcacgccttgcaCgacataggaaaattcatact	7	10	2	0	rs199880338		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	52941908	C	T	52941908	4	4	43	1	0	0	0	0	0	1	0	0	18078	528	19	1	1248	1	ZNF534	19	52941908	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	321957	52941908	6187075	953	4119											
TSEN34	79042	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	54696083	54696083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggccaggcccctggacTggcgtgtccagtctaaagac	12	13	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	54696083	T	C	54696083	3	2	43	1	0	0	0	0	1	0	0	0	16718	1580	55	2	614	2	TSEN34	19	54696083	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	1754175	54696083	4432900	954	4120											
LENG8	114823	hgsc.bcm.edu;mdanderson.org	37	chr19	54966579	54966579	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaacctgtctgggaagccCgatgactggccccaggacat	14	12	1	1	rs889147	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	54966579	C	T	54966579	2	4	43	1	0	0	0	0	0	0	0	1	8786	639	23	1		1	LENG8	19	54966579	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	270496	54966579	4162404	955	4121											
KIR3DL3	115653	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	55239156	55239156	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtcatcctgcaatgttgGtcagatgtcaggtttgagcg	13	8	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	55239156	G	A	55239156	4	1	43	1	0	0	0	0	0	1	0	0	8383	1270	44	3	449	3	KIR3DL3	19	55239156	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	272577	55239156	3889827	956	4122											
ZNF628	89887	mdanderson.org	37	chr19	55995597	55995597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcccagcctcgggccccGcggggctccccggggctcca	15	20	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	55995597	G	A	55995597	3	1	43	1	0	0	0	0	1	0	0	0	18157	1087	38	1	3027	1	ZNF628	19	55995597	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	756441	55995597	3133386	957	4123											
ZNF835	90485	mdanderson.org	37	chr19	57175578	57175578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcacgcgtagggcttctcgCctgtgtggatgcgccggtgc	16	13	1	0	rs12610410	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	57175578	C	T	57175578	3	4	43	1	0	0	0	0	1	0	0	0	18289	739	26	3	626	3	ZNF835	19	57175578	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1179981	57175578	1953405	958	4124											
ZIM3	114026	broad.mit.edu	37	chr19	57647366	57647366	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattctacacctttctgcgtAgtcagcgtttccttattgat	6	11	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	57647366	A	G	57647366	2	3	43	1	0	0	0	0	0	0	0	1	17790	407	15	2		2	ZIM3	19	57647366	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	471788	57647366	1481617	959	4125											
ZNF805	390980	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	57765510	57765510	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttcacccactgctctacTttcatcttgcataaaagggc	6	14	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	57765510	T	G	57765510	2	3	43	1	0	0	0	0	0	0	0	1	18275	1596	56	5		5	ZNF805	19	57765510	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	118144	57765510	1363473	960	4126											
ZNF773	374928	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	58017797	58017797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaagtgcccagttcaaacGttcagcaacaccagaagcag	9	11	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	58017797	G	A	58017797	3	1	43	1	0	0	0	0	1	0	0	0	18249	1145	40	1	348	1	ZNF773	19	58017797	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	252287	58017797	1111186	961	4127											
ZNF776	284309	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	58264681	58264681	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttggtatggagcaaaagaCgagacaccttctaagcagac	11	8	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	58264681	C	T	58264681	2	4	43	1	0	0	0	0	0	0	0	1	18252	535	19	1		1	ZNF776	19	58264681	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	246884	58264681	864302	962	4128											
RBCK1	10616	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	398443	398443	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcagcggctggcacgagAccaggagaccctgcactccc	14	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	398443	A	T	398443	3	4	43	1	0	0	0	0	1	0	0	0	13199	275	10	5	362	5	RBCK1	20	398443	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10		398443	62627077	963	4129											
TBC1D20	128637	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	420958	420958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtcatataaccgcacgacGtgcctgaagtcagacaggac	10	11	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	420958	G	A	420958	2	1	43	1	0	0	0	0	0	0	0	1	15710	1136	40	1		1	TBC1D20	20	420958	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	22515	420958	62604562	964	4130											
FAM110A	83541	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	826273	826273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtggtggagcgcaatgccCgcgtgatcaagtggttgtat	16	8	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	826273	C	T	826273	3	4	43	1	0	0	0	0	1	0	0	0	5439	652	23	1	828	1	FAM110A	20	826273	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	405315	826273	62199247	965	4131											
SNRPB	6628	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	2442418	2442418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtctagggccttggtgggCgcattcccgggggagggggc	21	9	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2442418	C	T	2442418	3	4	43	1	0	0	0	0	1	0	0	0	14959	768	27	1	19	1	SNRPB	20	2442418	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1616145	2442418	60583102	966	4132											
ZNF343	79175	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	2464066	2464066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcttctcatttgagtgcGtcctctggtgtctgatgaga	12	8	3	3	rs139834625	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	2464066	G	A	2464066	3	1	43	1	0	0	0	0	1	0	0	0	17963	1145	40	1	262	1	ZNF343	20	2464066	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	21648	2464066	60561454	967	4133											
TMC2	117532	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	2560637	2560637	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catcgtatttcatctttctcCgatggatgtatggagttaac	8	8	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	2560637	C	T	2560637	4	4	43	1	0	0	0	0	0	1	0	0	16089	644	23	1	795	1	TMC2	20	2560637	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	96571	2560637	60464883	968	4134											
PRNP	5621	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	4680473	4680473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaacttcaccgagaccgacGttaagatgatggagcgcgtg	13	9	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	4680473	G	A	4680473	3	1	43	1	0	0	0	0	1	0	0	0	12633	1145	40	1	609	1	PRNP	20	4680473	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2119836	4680473	58345047	969	4135											
C20orf196	149840	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	5843951	5843951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcccgggtgatcttcaacCgggacggctgctccgtctta	13	13	3	1	rs140278441		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	5843951	C	T	5843951	3	4	43	1	0	0	0	0	1	0	0	0	2121	643	23	1	466	1	C20orf196	20	5843951	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1163478	5843951	57181569	970	4136											
MACROD2	140733	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	16021924	16021924	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatactccaggtcctgatgGtaaggttctgagctattgga	11	7	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	16021924	G	A	16021924	5	1	43	1	0	0	0	0	0	0	1	0	9219	1275	44	3	1294	3	MACROD2	20	16021924	Splice_Site	SNP	G	TCGA-KN-8428-01A-11D-2310-10	10177973	16021924	47003596	971	4137											
OVOL2	58495	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	18022295	18022295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggtgacggttcagcatgcGctgcagacggaagcccttgc	15	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	18022295	G	A	18022295	3	1	43	1	0	0	0	0	1	0	0	0	11406	1087	38	1	441	1	OVOL2	20	18022295	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2000371	18022295	45003225	972	4138											
ZNF133	7692	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	18287023	18287023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggaaaaaaaatgttcacCggcaacctgtccaggtgagt	11	8	1	2	rs149645929		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	18287023	C	T	18287023	3	4	43	1	0	0	0	0	1	0	0	0	17828	652	23	1	209	1	ZNF133	20	18287023	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	264728	18287023	44738497	973	4139											
RALGAPA2	57186	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	20475759	20475759	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaatgcaatgaaaacgtAcctcaggtttcttcgttatc	6	10	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	20475759	A	G	20475759	5	3	43	1	0	0	0	0	0	0	1	0	13106	405	14	2	268	2	RALGAPA2	20	20475759	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2188736	20475759	42549761	974	4140											
NKX2-4	644524	hgsc.bcm.edu;ucsc.edu	37	chr20	21376975	21376975	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgcgctcgggcgccgacagGtacttctgctgcttgaagcg	14	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21376975	G	A	21376975	2	1	43	1	0	0	0	0	0	0	0	1	10531	1256	44	3		3	NKX2-4	20	21376975	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	901216	21376975	41648545	975	4141											
CST5	1473	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	23858242	23858242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacattgaagtagtagttcAccccacccacgatctacacg	6	14	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	23858242	A	G	23858242	3	3	43	1	0	0	0	0	1	0	0	0	4006	159	6	2	191	2	CST5	20	23858242	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2481267	23858242	39167278	976	4142											
COX4I2	84701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	30231238	30231238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttcaatgagacctttgcGgagatgaaccgtcgctccaa	10	11	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	30231238	G	A	30231238	2	1	43	1	0	0	0	0	0	0	0	1	3799	1103	39	1		1	COX4I2	20	30231238	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	6372996	30231238	32794282	977	4143											
CEP250	11190	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	34050290	34050290	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actacagcagcagatggcagAgaatcaggcagcctcctggc	12	12	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	34050290	A	C	34050290	3	2	43	1	0	0	0	0	1	0	0	0	3281	304	11	5	100	5	CEP250	20	34050290	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3819052	34050290	28975230	978	4144											
SPAG4	6676	ucsc.edu	37	chr20	34207645	34207645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccggaggagccaacagcGccccccgcgatttcgcggtc	12	17	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	34207645	G	A	34207645	3	1	43	1	0	0	0	0	1	0	0	0	15080	1087	38	1	1092	1	SPAG4	20	34207645	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	157355	34207645	28817875	979	4145											
SLC32A1	140679	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	37353701	37353701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggcgaattcgggggccacGacaagcccaaaatcacggcg	14	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	37353701	G	A	37353701	3	1	43	1	0	0	0	0	1	0	0	0	14663	1058	37	1	336	1	SLC32A1	20	37353701	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3146056	37353701	25671819	980	4146											
PPP1R16B	26051	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	37529279	37529279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acatgccatatgacctctgcGaggatgaacccaccctggat	9	13	1	2	rs139690056		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	37529279	G	A	37529279	3	1	43	1	0	0	0	0	1	0	0	0	12451	1059	37	1	537	1	PPP1R16B	20	37529279	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	175578	37529279	25496241	981	4147											
PLCG1	5335	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	39801085	39801085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcacagaacgtgcttgctAccgggacatgtcatccttcc	10	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	39801085	A	G	39801085	3	3	43	1	0	0	0	0	1	0	0	0	12115	391	14	2	3032	2	PLCG1	20	39801085	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	2271806	39801085	23224435	982	4148											
LPIN3	64900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	39980542	39980542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggactctgagaatgcagCgctttacttcccccaaaggt	9	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	39980542	C	T	39980542	3	4	43	1	0	0	0	0	1	0	0	0	8992	768	27	1	1210	1	LPIN3	20	39980542	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	179457	39980542	23044978	983	4149											
MMP9	4318	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	44641958	44641958	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgcagcccacggctcccccGacggtctgccccaccggacc	10	23	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	44641958	G	A	44641958	2	1	43	1	0	0	0	0	0	0	0	1	9747	1045	37	1		1	MMP9	20	44641958	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4661416	44641958	18383562	984	4150											
SLC2A10	81031	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	45355544	45355544	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatctaccctgtggagataCgaggaagagccttcgccttc	11	11	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	45355544	C	T	45355544	4	4	43	1	0	0	0	0	0	1	0	0	14637	528	19	1	1340	1	SLC2A10	20	45355544	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	713586	45355544	17669976	985	4151											
SULF2	55959	broad.mit.edu	37	chr20	46365622	46365622	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggtgtggtcacgaaggcGttgatgaagtgcgccccgcc	16	10	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	46365622	G	A	46365622	2	1	43	1	0	0	0	0	0	0	0	1	15471	1136	40	1		1	SULF2	20	46365622	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1010078	46365622	16659898	986	4152											
KCNB1	3745	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	48098552	48098552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcgccttcccgctcccGtagggtctcggcctcacgct	9	20	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48098552	G	A	48098552	3	1	43	1	0	0	0	0	1	0	0	0	8073	1144	40	1	2118	1	KCNB1	20	48098552	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1732930	48098552	14926968	987	4153											
SPATA2	9825	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	48524979	48524979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atggaactgcacgtacttccGaaataagtcatccttgaatt	7	9	1	1	rs77667957		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	48524979	G	A	48524979	3	1	43	1	0	0	0	0	1	0	0	0	15105	1057	37	1	1521	1	SPATA2	20	48524979	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	426427	48524979	14500541	988	4154											
TMEM189	387521	broad.mit.edu;mdanderson.org	37	chr20	48744630	48744630	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcgtggcagcccaaagtaCgtgtgcgaccacttgtggat	13	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	48744630	C	T	48744630	2	4	43	1	0	0	0	0	0	0	0	1	16215	523	19	1		1	TMEM189	20	48744630	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	219651	48744630	14280890	989	4155											
FAM65C	140876	broad.mit.edu	37	chr20	49218734	49218734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgagggccacgccaggccCgtcctctctgtccccggttg	12	18	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49218734	C	T	49218734	3	4	43	1	0	0	0	0	1	0	0	0	5650	652	23	1	1358	1	FAM65C	20	49218734	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	474104	49218734	13806786	990	4156											
BCAS1	8537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	52601913	52601913	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggttcaggggttgtcacGgactgtgtgtgccccgatgg	17	9	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	52601913	G	A	52601913	2	1	43	1	0	0	0	0	0	0	0	1	1354	1103	39	1		1	BCAS1	20	52601913	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3383179	52601913	10423607	991	4157											
BCAS1	8537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	52645320	52645320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatccaagggatgaatctgCggcttggtctccggtacgtc	13	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	52645320	C	T	52645320	3	4	43	1	0	0	0	0	1	0	0	0	1354	768	27	1	1456	1	BCAS1	20	52645320	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	43407	52645320	10380200	992	4158											
BMP7	655	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	55803427	55803427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttggaaagatcaaaccGgaactctcgatggtggtagc	12	8	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	55803427	G	A	55803427	3	1	43	1	0	0	0	0	1	0	0	0	1470	1115	39	1	850	1	BMP7	20	55803427	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3158107	55803427	7222093	993	4159											
ZBP1	81030	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr20	56185305	56185305	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctgttgccgatggtggcGtcctcgagaaagcacgattt	13	9	0	1	rs186925447	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	56185305	G	A	56185305	2	1	43	1	0	0	0	0	0	0	0	1	17626	1136	40	1		1	ZBP1	20	56185305	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	381878	56185305	6840215	994	4160											
PMEPA1	56937	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr20	56227600	56227600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggaagcgctcccgctgggCgaagggcggcacggccaggc	19	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	56227600	C	T	56227600	3	4	43	1	0	0	0	0	1	0	0	0	12212	768	27	1	494	1	PMEPA1	20	56227600	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	42295	56227600	6797920	995	4161											
ZNF831	128611	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	57769704	57769704	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgtacttggcggtgcaCtttcctggtagcagcctccg	12	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	57769704	C	T	57769704	2	4	43	1	0	0	0	0	0	0	0	1	18288	564	20	4		4	ZNF831	20	57769704	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1542104	57769704	5255816	996	4162											
EDN3	1908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	57899467	57899467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggcagtggactcgccctcGctccatctacctgcccccgc	9	21	1	0	rs11570351	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	57899467	G	A	57899467	3	1	43	1	0	0	0	0	1	0	0	0	4955	1087	38	1	727	1	EDN3	20	57899467	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	129763	57899467	5126053	997	4163											
HRH3	11255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	60791451	60791451	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccctcttgagtgagcgcgGcctctcagtgcccctcgagg	13	16	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	60791451	G	A	60791451	3	1	43	1	0	0	0	0	1	0	0	0	7415	1203	42	3	392	3	HRH3	20	60791451	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2891984	60791451	2234069	998	4164											
C20orf20	55257	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	61429984	61429984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaatccagagaggaacttcGtccttccagaagagatcatt	9	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	61429984	G	A	61429984	3	1	43	1	0	0	0	0	1	0	0	0	2123	1145	40	1	326	1	C20orf20	20	61429984	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	638533	61429984	1595536	999	4165											
NKAIN4	128414	broad.mit.edu;mdanderson.org	37	chr20	61878938	61878938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccacgctcaccgcgatcaGgatctgcaggcaactgtgta	10	15	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	61878938	G	A	61878938	2	1	43	1	0	0	0	0	0	0	0	1	10517	991	35	4		4	NKAIN4	20	61878938	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	448954	61878938	1146582	1000	4166											
CHRNA4	1137	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	61981545	61981545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagggggacacagaaggaCggtgagggcgggtgcaggct	20	8	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	61981545	C	T	61981545	2	4	43	1	0	0	0	0	0	0	0	1	3414	523	19	1		1	CHRNA4	20	61981545	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	102607	61981545	1043975	1001	4167											
KCNQ2	3785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	62065203	62065203	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcgctcgtagtactgccaCgtggagtgcaggtctgtgcg	15	10	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	62065203	C	T	62065203	2	4	43	1	0	0	0	0	0	0	0	1	8144	523	19	1		1	KCNQ2	20	62065203	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	83658	62065203	960317	1002	4168											
C20orf195	79025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	62187191	62187191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacctcggacctgagtccgCacctgctcaagcgccaccac	9	18	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	62187191	C	T	62187191	3	4	43	1	0	0	0	0	1	0	0	0	2120	710	25	4	177	4	C20orf195	20	62187191	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	121988	62187191	838329	1003	4169											
PRIC285	85441	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	62200925	62200925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacggaagcgctcaccccGtgcgtagagccggcctggcg	14	16	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	62200925	G	A	62200925	3	1	43	1	0	0	0	0	1	0	0	0	12574	1144	40	1	7372	1	PRIC285	20	62200925	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13734	62200925	824595	1004	4170											
RTEL1	51750	mdanderson.org	37	chr20	62322288	62322288	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacagcgggcggggagcccTggcgaggagcaggtacagtt	19	9	0	0	rs3208007	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	62322288	T	C	62322288	2	2	43	1	0	0	0	0	0	0	0	1	13815	1567	55	2		2	RTEL1	20	62322288	Silent	SNP	T	TCGA-KN-8428-01A-11D-2310-10	121363	62322288	703232	1005	4171											
UCKL1	54963	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	62571654	62571654	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttgtcctcaggcacgtcGtggtcctaccgagtgtattg	11	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	62571654	G	A	62571654	2	1	43	1	0	0	0	0	0	0	0	1	17031	1136	40	1		1	UCKL1	20	62571654	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	249366	62571654	453866	1006	4172											
ZNF512B	57473	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr20	62598240	62598240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccttaccccttggcaccGctggtaatggtacttgagcc	10	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	62598240	G	A	62598240	3	1	43	1	0	0	0	0	1	0	0	0	18062	1086	38	1	2352	1	ZNF512B	20	62598240	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	26586	62598240	427280	1007	4173											
ITSN1	6453	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr21	35260567	35260567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccccacgggagagattgTggtccgcttggacctgcagt	14	11	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	35260567	T	C	35260567	3	2	43	1	0	0	0	0	1	0	0	0	7987	1696	59	2	5289	2	ITSN1	21	35260567	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10		35260567	12869328	1008	4174											
KCNE1	3753	mdanderson.org	37	chr21	35821711	35821711	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tagacgttgaatgggtcgttCgagtgctccagcttcttgga	13	8	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	35821711	C	T	35821711	2	4	43	1	0	0	0	0	0	0	0	1	8082	871	31	1		1	KCNE1	21	35821711	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	561144	35821711	12308184	1009	4175											
IGSF5	150084	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr21	41151173	41151173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgctgctgctgctgccgccGtcgttgttgtggctgcaact	13	13	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	41151173	G	A	41151173	3	1	43	1	0	0	0	0	1	0	0	0	7663	1145	40	1	893	1	IGSF5	21	41151173	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5329462	41151173	6978722	1010	4176											
UMODL1	89766	mdanderson.org	37	chr21	43531403	43531403	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaggtgaaccccagccagCggagcaccagccacgcgaac	12	17	0	1	rs220127		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	43531403	C	G	43531403	3	3	43	1	0	0	0	0	1	0	0	0	17086	759	27	5	2113	5	UMODL1	21	43531403	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2380230	43531403	4598492	1011	4177											
CCT8L2	150160	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr22	17072519	17072519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caccacgatgccatacttgtCcgccagtgtgagggtctcct	10	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	17072519	C	T	17072519	3	4	43	1	0	0	0	0	1	0	0	0	2990	855	30	3	755	3	CCT8L2	22	17072519	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10		17072519	34232047	1012	4178											
PRODH	5625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	18912624	18912624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgcacttggcctcattggCgtagaagtaggtgcgggcac	15	10	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	18912624	C	T	18912624	3	4	43	1	0	0	0	0	1	0	0	0	12637	768	27	1	1239	1	PRODH	22	18912624	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1840105	18912624	32391942	1013	4179											
SEPT5	5413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	19707904	19707904	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtacttccgtgatgagagcGgcctcaaccgaaagaacatc	10	11	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	19707904	G	A	19707904	3	1	43	1	0	0	0	0	1	0	0	0	14164	1116	39	1	446	1	SEPT5	22	19707904	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	795280	19707904	31596662	1014	4180											
C22orf29	79680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	19839716	19839716	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctgctgccatggatgtgcGttggcataattggcggctgc	14	9	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	19839716	G	A	19839716	2	1	43	1	0	0	0	0	0	0	0	1	2161	1136	40	1		1	C22orf29	22	19839716	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	131812	19839716	31464850	1015	4181											
PI4KA	5297	broad.mit.edu;mdanderson.org	37	chr22	21082095	21082095	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacatcactaacggctccCgggtccaaccgaacgagacg	11	15	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	21082095	C	T	21082095	2	4	43	1	0	0	0	0	0	0	0	1	11953	639	23	1		1	PI4KA	22	21082095	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1242379	21082095	30222471	1016	4182											
ZNF280A	129025	broad.mit.edu;bcgsc.ca	37	chr22	22868961	22868961	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgctggcaggtggtgtggtCttcccagctgtcgttcctct	14	11	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	22868961	C	T	22868961	3	4	43	1	0	0	0	0	1	0	0	0	17919	913	32	4	638	4	ZNF280A	22	22868961	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1786866	22868961	28435605	1017	4183											
IGLL5	100423062	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	23230424	23230424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcagccgatccagcctgcGgagcctgtggggcaggtaag	16	11	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	23230424	G	A	23230424	3	1	43	1	0	0	0	0	1	0	0	0	7655	1116	39	1	193	1	IGLL5	22	23230424	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	361463	23230424	28074142	1018	4184											
GNAZ	2781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	23438268	23438268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgagctgctgggtgtcatgcGacggctctgggccgacccag	16	13	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	23438268	G	A	23438268	3	1	43	1	0	0	0	0	1	0	0	0	6570	1058	37	1	388	1	GNAZ	22	23438268	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	207844	23438268	27866298	1019	4185											
SMARCB1	6598	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	24176351	24176351	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgaggcgtcttgccaacaCggccccggcctggtaaccag	13	14	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	24176351	C	T	24176351	3	4	43	1	0	0	0	0	1	0	0	0	14872	536	19	1	1176	1	SMARCB1	22	24176351	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	738083	24176351	27128215	1020	4186											
ADORA2A	135	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	24836835	24836835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gatcttcctggcggcgcgacGacagctgaagcagatggaga	15	10	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	24836835	G	A	24836835	3	1	43	1	0	0	0	0	1	0	0	0	327	1058	37	1	623	1	ADORA2A	22	24836835	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	660484	24836835	26467731	1021	4187											
ADORA2A	135	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	24837116	24837116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgagttccgccagaccttcCgcaagatcattcgcagccac	9	16	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	24837116	C	T	24837116	3	4	43	1	0	0	0	0	1	0	0	0	327	652	23	1	904	1	ADORA2A	22	24837116	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	281	24837116	26467450	1022	4188											
MYO18B	84700	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	26422449	26422449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacactgagaggacccagtCggcattggcactgagcagag	15	10	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	26422449	C	T	26422449	3	4	43	1	0	0	0	0	1	0	0	0	10144	893	31	1	6675	1	MYO18B	22	26422449	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1585333	26422449	24882117	1023	4189											
SEZ6L	23544	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	26688611	26688611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggcccgccccaagcacGccttgccccccaagaagaaa	10	17	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	26688611	G	A	26688611	3	1	43	1	0	0	0	0	1	0	0	0	14240	1087	38	1	340	1	SEZ6L	22	26688611	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	266162	26688611	24615955	1024	4190											
CHEK2	11200	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr22	29091740	29091740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactccagcagtccacagcaCggttatacccagcagtccca	7	16	0	0	rs200649225		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	29091740	C	T	29091740	3	4	43	1	0	0	0	0	1	0	0	0	3364	536	19	1	434	1	CHEK2	22	29091740	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2403129	29091740	22212826	1025	4191											
GAL3ST1	9514	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	30951743	30951743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcaccgtgatgaagatggCgttggtcggcaccaggccgc	16	11	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	30951743	C	T	30951743	3	4	43	1	0	0	0	0	1	0	0	0	6251	768	27	1	806	1	GAL3ST1	22	30951743	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1860003	30951743	20352823	1026	4192											
MORC2	22880	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	31328607	31328607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaggctcaatgcggaggCattcggaagtggagggctct	16	8	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	31328607	C	T	31328607	3	4	43	1	0	0	0	0	1	0	0	0	9780	710	25	4	442	4	MORC2	22	31328607	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	376864	31328607	19975959	1027	4193											
EIF4ENIF1	56478	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	31843508	31843508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaggtcatgtggcaagGccagcccttctaaagctgcc	11	13	2	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	31843508	G	A	31843508	3	1	43	1	0	0	0	0	1	0	0	0	5074	1203	42	3	1089	3	EIF4ENIF1	22	31843508	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	514901	31843508	19461058	1028	4194											
EIF4ENIF1	56478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	31851930	31851930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagagaaccacctactgaacCgactggcagagactgaccct	9	13	0	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	31851930	C	T	31851930	3	4	43	1	0	0	0	0	1	0	0	0	5074	652	23	1	2001	1	EIF4ENIF1	22	31851930	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8422	31851930	19452636	1029	4195											
PISD	23761	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	32019743	32019743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaggtagtagaggacgGtcaagggccaggagcgcagt	19	7	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	32019743	G	A	32019743	3	1	43	1	0	0	0	0	1	0	0	0	12026	1261	44	3	1005	3	PISD	22	32019743	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	167813	32019743	19284823	1030	4196											
RFPL2	10739	broad.mit.edu;bcgsc.ca	37	chr22	32587274	32587274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgcgcccacttcggaCgctcctgaggtcgtcagaaa	11	13	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	32587274	C	T	32587274	3	4	43	1	0	0	0	0	1	0	0	0	13346	536	19	1	518	1	RFPL2	22	32587274	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	567531	32587274	18717292	1031	4197											
PDXP	57026	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	38061706	38061706	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttatggtgggtgaccgccTggagaccgacatcctctttg	13	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	38061706	T	C	38061706	3	2	43	1	0	0	0	0	1	0	0	0	11777	1580	55	2	725	2	PDXP	22	38061706	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	5474432	38061706	13242860	1032	4198											
TRIOBP	11078	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	38153951	38153951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgctggtgaggggccgCgccggggcctgggtgccccc	19	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38153951	C	T	38153951	3	4	43	1	0	0	0	0	1	0	0	0	16658	768	27	1	6260	1	TRIOBP	22	38153951	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	92245	38153951	13150615	1033	4199											
PLA2G6	8398	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	38522429	38522429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgctggcttccgggccCgtgagatgtgcatgagatcc	14	11	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38522429	C	T	38522429	3	4	43	1	0	0	0	0	1	0	0	0	12088	652	23	1	1076	1	PLA2G6	22	38522429	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	368478	38522429	12782137	1034	4200											
PLA2G6	8398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	38536030	38536030	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgagtggatggggtagccGttggggcccatgatgttgca	18	8	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	38536030	G	A	38536030	2	1	43	1	0	0	0	0	0	0	0	1	12088	1136	40	1		1	PLA2G6	22	38536030	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	13601	38536030	12768536	1035	4201											
KDELR3	11015	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	38875685	38875685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagtgagaatgacacattcCgcctggagtttcttctggtc	10	10	2	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	38875685	C	T	38875685	3	4	43	1	0	0	0	0	1	0	0	0	8182	652	23	1	290	1	KDELR3	22	38875685	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	339655	38875685	12428881	1036	4202											
APOBEC3G	60489	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	39482315	39482315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acacggtttccttgaaggccGccatgcagagctgtgcttcc	11	13	0	2	rs17000736	bycluster;byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	39482315	G	A	39482315	3	1	43	1	0	0	0	0	1	0	0	0	796	1087	38	1	789	1	APOBEC3G	22	39482315	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	606630	39482315	11822251	1037	4203											
TNRC6B	23112	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	40717184	40717184	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagggcactgccctgatcCgatacagcaccaaacaggag	10	15	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	40717184	C	T	40717184	4	4	43	1	0	0	0	0	0	1	0	0	16445	644	23	1	5272	1	TNRC6B	22	40717184	Nonsense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1234869	40717184	10587382	1038	4204											
CENPM	79019	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	42341239	42341239	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acgtacttaccacctgtggcGaggaaacacaccttccccaa	7	15	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42341239	G	A	42341239	2	1	43	1	0	0	0	0	0	0	0	1	3266	1045	37	1		1	CENPM	22	42341239	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1624055	42341239	8963327	1039	4205											
C22orf32	91689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	42475891	42475891	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcatggagcggctcaggccGgagcctggtaccgtcgaggt	17	12	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	42475891	G	T	42475891	3	4	43	1	0	0	0	0	1	0	0	0	2164	1116	39	5	121	5	C22orf32	22	42475891	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	134652	42475891	8828675	1040	4206											
C22orf32	91689	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	42475902	42475902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaggccggagcctggtaCcgtcgaggtcagtcatcgtt	14	12	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42475902	C	A	42475902	3	1	43	1	0	0	0	0	1	0	0	0	2164	507	18	5	132	5	C22orf32	22	42475902	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	11	42475902	8828664	1041	4207											
CYP2D6	1565	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr22	42525053	42525053	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accggagtggttggcgaaggCggcacaaaggcaggcggcct	18	10	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	42525053	C	T	42525053	3	4	43	1	0	0	0	0	1	0	0	0	4200	768	27	1	1034	1	CYP2D6	22	42525053	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	49151	42525053	8779513	1042	4208											
TCF20	6942	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	42607545	42607545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagagataaaagaacgaacaCgcctcctcatgattaagggg	11	8	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	42607545	C	T	42607545	3	4	43	1	0	0	0	0	1	0	0	0	15794	536	19	1	2153	1	TCF20	22	42607545	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	82492	42607545	8697021	1043	4209											
POLDIP3	84271	broad.mit.edu	37	chr22	42987962	42987962	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttctccctaacttaccGtccagacaccggttgttgta	7	13	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	42987962	G	A	42987962	2	1	43	1	0	0	0	0	0	0	0	1	12275	1159	40	1		1	POLDIP3	22	42987962	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	380417	42987962	8316604	1044	4210											
ARFGAP3	26286	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	43236982	43236982	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccgacttgcatgcatcGcaactgaaaccatgaccagt	7	14	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	43236982	G	A	43236982	4	1	43	1	0	0	0	0	0	1	0	0	853	1095	38	1	1377	1	ARFGAP3	22	43236982	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	249020	43236982	8067584	1045	4211											
TSPO	706	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	43558971	43558971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgggacaaccatggctggCgtgggggacggcggctgcca	20	11	0	0	rs41371752	bycluster;byfrequency;alternate_allele	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	43558971	C	T	43558971	3	4	43	1	0	0	0	0	1	0	0	0	16760	768	27	1	494	1	TSPO	22	43558971	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	321989	43558971	7745595	1046	4212											
CELSR1	9620	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	46806300	46806300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggccacccgtaccttccCgggtgccattgttggcgatg	13	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	46806300	C	T	46806300	3	4	43	1	0	0	0	0	1	0	0	0	3250	652	23	1	4232	1	CELSR1	22	46806300	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3247329	46806300	4498266	1047	4213											
TBC1D22A	25771	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	47189694	47189694	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accccccagcggcgacctccGgctggtgaagtcggtcagtg	14	15	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	47189694	G	A	47189694	3	1	43	1	0	0	0	0	1	0	0	0	15712	1116	39	1	426	1	TBC1D22A	22	47189694	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	383394	47189694	4114872	1048	4214											
BRD1	23774	ucsc.edu	37	chr22	50217223	50217223	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccctcggggatgtagggcAccccgtagcactcctggtgc	15	14	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	50217223	A	G	50217223	3	3	43	1	0	0	0	0	1	0	0	0	1509	159	6	2	2481	2	BRD1	22	50217223	Missense_Mutation	SNP	A	TCGA-KN-8428-01A-11D-2310-10	3027529	50217223	1087343	1049	4215											
PANX2	56666	broad.mit.edu	37	chr22	50617544	50617544	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgaaacgccacacacccGctgctgcacatcaacacgct	7	18	1	0	rs114447696		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	50617544	G	A	50617544	2	1	43	1	0	0	0	0	0	0	0	1	11500	1074	38	1		1	PANX2	22	50617544	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	400321	50617544	687022	1050	4216											
TUBGCP6	85378	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	50664592	50664592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctctttggagatgagcaCgtagccatgtgtccagtaca	10	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	50664592	C	T	50664592	3	4	43	1	0	0	0	0	1	0	0	0	16876	536	19	1	3807	1	TUBGCP6	22	50664592	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	47048	50664592	639974	1051	4217											
PLXNB2	23654	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	50720400	50720400	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcagggcacggtgcccGtccatctcgatcagcaccgt	12	15	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	50720400	G	A	50720400	2	1	43	1	0	0	0	0	0	0	0	1	12204	1136	40	1		1	PLXNB2	22	50720400	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	55808	50720400	584166	1052	4218											
PLXNB2	23654	hgsc.bcm.edu	37	chr22	50726135	50726135	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatgttctgtggctgggcGctggtgacggccacgcagga	16	11	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	50726135	G	A	50726135	2	1	43	1	0	0	0	0	0	0	0	1	12204	1078	38	1		1	PLXNB2	22	50726135	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5735	50726135	578431	1053	4219											
ARSA	410	broad.mit.edu	37	chr22	51064679	51064679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaagagaccggagcagccGcctcgggacatacgcatggt	14	13	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	51064679	G	A	51064679	2	1	43	1	0	0	0	0	0	0	0	1	991	1074	38	1		1	ARSA	22	51064679	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	338544	51064679	239887	1054	4220											
SHANK3	85358	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr22	51117231	51117231	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcagcccagctggacaaCgccacggacctgctaaaggt	11	15	0	0	rs79762996	byfrequency;by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	51117231	C	T	51117231	2	4	43	1	0	0	0	0	0	0	0	1	14364	535	19	1		1	SHANK3	22	51117231	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	52552	51117231	187335	1055	4221											
SLC25A6	293	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	1506261	1506261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacggccgtcacggtctgcGcgatcatccagctcaccacg	10	18	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	1506261	G	A	1506261	3	1	43	1	0	0	0	0	1	0	0	0	14611	1087	38	1	254	1	SLC25A6	23	1506261	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10		1506261	153764299	1056	4222											
ARSH	347527	broad.mit.edu	37	chrX	2933300	2933300	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctttctgtttttcacttcCtggtactctagttatggatt	7	9	3	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	2933300	C	A	2933300	2	1	43	1	0	0	0	0	0	0	0	1	997	668	24	5		5	ARSH	23	2933300	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	1427039	2933300	152337260	1057	4223											
NLGN4X	57502	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	5827148	5827148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cacaggaggccccagcccccGagccaaagatggtcactctc	10	17	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	5827148	G	A	5827148	3	1	43	1	0	0	0	0	1	0	0	0	10543	1059	37	1	1704	1	NLGN4X	23	5827148	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	2893848	5827148	149443412	1058	4224											
ATXN3L	92552	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	13337345	13337345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctattggtttcttggcGgcttagttcaagggccctct	10	10	4	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	13337345	G	A	13337345	3	1	43	1	0	0	0	0	1	0	0	0	1218	1116	39	1	362	1	ATXN3L	23	13337345	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7510197	13337345	141933215	1059	4225											
KLHL34	257240	hgsc.bcm.edu	37	chrX	21675168	21675168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgatgaggcccttgacccGggcgggcagcacgaggccag	17	12	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	21675168	G	A	21675168	3	1	43	1	0	0	0	0	1	0	0	0	8448	1115	39	1	1199	1	KLHL34	23	21675168	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8337823	21675168	133595392	1060	4226											
CXorf22	170063	mdanderson.org;bcgsc.ca	37	chrX	35944236	35944236	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacgaagacacttttgacCggctacttatttcaatagaa	7	8	1	4	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	35944236	C	T	35944236	3	4	43	1	0	0	0	0	1	0	0	0	4133	643	23	1	358	1	CXorf22	23	35944236	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	14269068	35944236	119326324	1061	4227											
FAM47C	442444	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	37028375	37028375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactggagtgtcccatctccGcccagagcctcccaagactc	9	17	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	37028375	G	A	37028375	3	1	43	1	0	0	0	0	1	0	0	0	5620	1087	38	1	1894	1	FAM47C	23	37028375	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1084139	37028375	118242185	1062	4228											
CCDC22	28952	broad.mit.edu;mdanderson.org	37	chrX	49106626	49106626	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatcgagacagagctgggCaagaagaccctcagcaacct	11	12	1	5	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	49106626	C	T	49106626	2	4	43	1	0	0	0	0	0	0	0	1	2823	697	25	4		4	CCDC22	23	49106626	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	12078251	49106626	106163934	1063	4229											
HUWE1	10075	broad.mit.edu;bcgsc.ca	37	chrX	53615355	53615355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttacctcaaaaagtagcGttaaaagcaagattctagta	6	7	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	53615355	G	A	53615355	3	1	43	1	0	0	0	0	1	0	0	0	7522	1145	40	1	8715	1	HUWE1	23	53615355	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	4508729	53615355	101655205	1064	4230											
PHF8	23133	broad.mit.edu;mdanderson.org	37	chrX	54012317	54012317	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcaagaatgccaccagcGccactaccattcccaagctt	6	15	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	54012317	G	A	54012317	2	1	43	1	0	0	0	0	0	0	0	1	11920	1074	38	1		1	PHF8	23	54012317	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	396962	54012317	101258243	1065	4231											
EDA2R	60401	broad.mit.edu	37	chrX	65819457	65819457	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttgcaggtccagctctgTgcattcgatggggctgtgga	14	9	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	65819457	T	G	65819457	3	3	43	1	0	0	0	0	1	0	0	0	4941	1696	59	5	134	5	EDA2R	23	65819457	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	11807140	65819457	89451103	1066	4232											
KIF4A	24137	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	69595076	69595076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgagcgccgccgcaaaCgtctccaggagctggagggt	16	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	69595076	C	T	69595076	3	4	43	1	0	0	0	0	1	0	0	0	8364	536	19	1	1863	1	KIF4A	23	69595076	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3775619	69595076	85675484	1067	4233											
TEX11	56159	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	70080718	70080718	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacttaccataatcagtcGttgaatactttgttctgagg	8	7	2	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	70080718	G	A	70080718	4	1	43	1	0	0	0	0	0	1	0	0	15878	1153	40	1	2568	1	TEX11	23	70080718	Nonsense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	485642	70080718	85189842	1068	4234											
GJB1	2705	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	70443744	70443744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagcctggctgcaacagcGtttgctatgaccaattcttc	8	13	1	1	rs116840818		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	70443744	G	A	70443744	3	1	43	1	0	0	0	0	1	0	0	0	6463	1145	40	1	189	1	GJB1	23	70443744	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	363026	70443744	84826816	1069	4235											
NHSL2	340527	hgsc.bcm.edu;mdanderson.org	37	chrX	71360545	71360545	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accaagtgtcccgccaccggCgatgacctgcaatcacttgg	10	15	1	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	71360545	C	T	71360545	2	4	43	1	0	0	0	0	0	0	0	1	10491	755	27	1		1	NHSL2	23	71360545	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	916801	71360545	83910015	1070	4236											
ERCC6L	54821	broad.mit.edu	37	chrX	71425000	71425000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcttttagttcttttccaCgctttacaagagtctcatag	5	10	3	1	rs140225715	byfrequency	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	71425000	C	T	71425000	3	4	43	1	0	0	0	0	1	0	0	0	5257	536	19	1	139	1	ERCC6L	23	71425000	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	64455	71425000	83845560	1071	4237											
SLC16A2	6567	broad.mit.edu;bcgsc.ca	37	chrX	73744294	73744294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggccactactttcaaCgccgcctgggtctggccaat	10	15	2	0	rs201194222		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	73744294	C	T	73744294	3	4	43	1	0	0	0	0	1	0	0	0	14506	536	19	1	908	1	SLC16A2	23	73744294	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	2319294	73744294	81526266	1072	4238											
ATRX	546	broad.mit.edu	37	chrX	76888847	76888847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagcttctctcctgaggaCgtttcacagttgctaattca	8	10	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	76888847	C	T	76888847	3	4	43	1	0	0	0	0	1	0	0	0	1212	536	19	1	2564	1	ATRX	23	76888847	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	3144553	76888847	78381713	1073	4239											
HDX	139324	broad.mit.edu	37	chrX	83599463	83599463	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcttcgattcccaatccaAgtctttataagagaaatata	4	9	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	83599463	A	C	83599463	2	2	43	1	0	0	0	0	0	0	0	1	7084	59	3	5		5	HDX	23	83599463	Silent	SNP	A	TCGA-KN-8428-01A-11D-2310-10	6710616	83599463	71671097	1074	4240											
FAM199X	139231	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	103431192	103431192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagtactgagatgggtcttCgggagcaacttgatattatt	12	5	1	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	103431192	C	T	103431192	3	4	43	1	0	0	0	0	1	0	0	0	5575	875	31	1	633	1	FAM199X	23	103431192	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	19831729	103431192	51839368	1075	4241											
TEX13A	56157	broad.mit.edu	37	chrX	104463685	104463685	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagattcccttcccacagtcGaagcaagtatccctccgtga	7	15	0	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	104463685	G	A	104463685	2	1	43	1	0	0	0	0	0	0	0	1	15880	1059	37	1		1	TEX13A	23	104463685	Silent	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1032493	104463685	50806875	1076	4242											
TBC1D8B	54885	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	106070529	106070529	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaactcaggctcagatgcGgagcagcttcaactcaatat	8	11	4	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	106070529	G	A	106070529	3	1	43	1	0	0	0	0	1	0	0	0	15730	1117	39	1	1191	1	TBC1D8B	23	106070529	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	1606844	106070529	49200031	1077	4243											
LRCH2	57631	hgsc.bcm.edu	37	chrX	114357360	114357360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgaatactagcaacagaaCgtggccttatatgattggct	9	8	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	114357360	C	T	114357360	3	4	43	1	0	0	0	0	1	0	0	0	9005	536	19	1	246	1	LRCH2	23	114357360	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	8286831	114357360	40913200	1078	4244											
IL13RA1	3597	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chrX	117907851	117907851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattctccaggtaagaagcGcaattccacactctacataa	5	12	3	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	117907851	G	A	117907851	3	1	43	1	0	0	0	0	1	0	0	0	7690	1087	38	1	1053	1	IL13RA1	23	117907851	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	3550491	117907851	37362709	1079	4245											
DCAF12L2	340578	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	125299514	125299514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgcatgagggggatgcGcgtgatgtggcctgactgca	17	10	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	125299514	G	A	125299514	3	1	43	1	0	0	0	0	1	0	0	0	4297	1087	38	1	1001	1	DCAF12L2	23	125299514	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	7391663	125299514	29971046	1080	4246											
BCORL1	63035	mdanderson.org;bcgsc.ca	37	chrX	129190044	129190044	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgagactgtggagctggTgcggtacgagccagacctac	14	11	1	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	129190044	T	C	129190044	3	2	43	1	0	0	0	0	1	0	0	0	1391	1696	59	2	5341	2	BCORL1	23	129190044	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	3890530	129190044	26080516	1081	4247											
ZNF280C	55609	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	129363022	129363022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggtgtgggatattgccggTaacagtgctggcaggtggtg	19	5	0	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		C	129363022	T	C	129363022	3	2	43	1	0	0	0	0	1	0	0	0	17921	1638	57	2	1177	2	ZNF280C	23	129363022	Missense_Mutation	SNP	T	TCGA-KN-8428-01A-11D-2310-10	172978	129363022	25907538	1082	4248											
ENOX2	10495	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	129804011	129804011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtggagatggtggacGcaatctttcttcttccattc	13	8	3	1	rs143816261	by1000genomes	TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	129804011	G	A	129804011	3	1	43	1	0	0	0	0	1	0	0	0	5166	1087	38	1	1159	1	ENOX2	23	129804011	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	440989	129804011	25466549	1083	4249											
ATP11C	286410	broad.mit.edu;mdanderson.org	37	chrX	138884415	138884415	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagaggtcaggttgaggCtgttcacattcaattgctgc	12	7	3	2	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	138884415	C	T	138884415	2	4	43	1	0	0	0	0	0	0	0	1	1125	796	28	4		4	ATP11C	23	138884415	Silent	SNP	C	TCGA-KN-8428-01A-11D-2310-10	9080404	138884415	16386145	1084	4250											
FMR1	2332	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	147011711	147011711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcactttcggagtctgcGcactaagttgtctctgataa	9	10	2	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	147011711	G	A	147011711	3	1	43	1	0	0	0	0	1	0	0	0	6009	1087	38	1	604	1	FMR1	23	147011711	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	8127296	147011711	8258849	1085	4251											
DUSP9	1852	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	152915503	152915503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtcagccgttctgtcaccGtcactgtggcctacctcatg	11	14	5	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	152915503	G	A	152915503	3	1	43	1	0	0	0	0	1	0	0	0	4869	1145	40	1	908	1	DUSP9	23	152915503	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	5903792	152915503	2355057	1086	4252											
PLXNB3	5365	broad.mit.edu	37	chrX	153037418	153037418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcagtacgccgtgagcGtggccagccggccctgcaac	14	14	0	1	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		A	153037418	G	A	153037418	3	1	43	1	0	0	0	0	1	0	0	0	12205	1145	40	1	2789	1	PLXNB3	23	153037418	Missense_Mutation	SNP	G	TCGA-KN-8428-01A-11D-2310-10	121915	153037418	2233142	1087	4253											
MECP2	4204	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	153296438	153296438	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctttctttttggcctcggCggcagcggctgccaccacac	12	15	1	0	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		T	153296438	C	T	153296438	3	4	43	1	0	0	0	0	1	0	0	0	9500	768	27	1	623	1	MECP2	23	153296438	Missense_Mutation	SNP	C	TCGA-KN-8428-01A-11D-2310-10	259020	153296438	1974122	1088	4254											
F8	2157	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	154197604	154197604	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaagatccaagatattAccatgttggtgggaagagat	10	4	0	3	novel		TCGA-KN-8428-01A-11D-2310-10	TCGA-KN-8428-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	322f0b01-2118-4dbe-aba1-3875a54ee71b	7a9405f5-81bf-4879-abfe-2688b8f3ca93		G	154197604	A	G	154197604	5	3	43	1	0	0	0	0	0	0	1	0	5390	405	14	2	6152	2	F8	23	154197604	Splice_Site	SNP	A	TCGA-KN-8428-01A-11D-2310-10	901166	154197604	1072956	1089	4255											
AGRN	375790	broad.mit.edu	37	chr1	983488	983489	+	In_Frame_Ins	INS	-	-	CCA													tcgcgcctgccgtcctctgcINStgtgacccctcgggccccgc					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		CCA	983489	-	CCA	983488	7	5	44	1	0	1	1	0	0	0	0	0	397	797	28	0	3938	0	AGRN	1	983488	In_Frame_Ins	INS	-	TCGA-KN-8429-01A-11D-2310-10		983488	248267133	1	4256	96	2									
AGRN	375790	broad.mit.edu	37	chr1	983491	983493	+	In_Frame_Del	DEL	TGA	TGA	-													gcgcctgccgtcctctgctgTgacccctcgggccccgcacc					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		-	983493	TGA	-	983491	7	5	44	1	0	1	0	1	0	0	0	0	397	1696	59	0	3941	0	AGRN	1	983491	In_Frame_Del	DEL	TGA	TCGA-KN-8429-01A-11D-2310-10	3	983491	248267130	2	4257	96	2									
NBPF1	55672	mdanderson.org	37	chr1	16907914	16907914	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgagtattcagtgttaCctgggggcagatgattccag	12	9	1	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	16907914	C	T	16907914	5	4	44	1	0	0	0	0	0	0	1	0	10270	521	18	3	2104	3	NBPF1	1	16907914	Splice_Site	SNP	C	TCGA-KN-8429-01A-11D-2310-10	15924423	16907914	232342707	3	4258											
RBMXL1	494115	mdanderson.org	37	chr1	89449237	89449237	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggcggtccatgtctaccTctttcaaatgatggtttggt	13	8	3	1	rs200727134		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	89449237	T	A	89449237	3	1	44	1	0	0	0	0	1	0	0	0	13245	1548	54	5	903	5	RBMXL1	1	89449237	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	72541323	89449237	159801384	4	4259											
CLCC1	23155	broad.mit.edu	37	chr1	109486125	109486125	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatacatccaattccatcccAaactgaacagaaagctgatg	5	11	0	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	109486125	A	C	109486125	3	2	44	1	0	0	0	0	1	0	0	0	3489	131	5	5	1005	5	CLCC1	1	109486125	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	20036888	109486125	139764496	5	4260											
OVGP1	5016	bcgsc.ca	37	chr1	111957517	111957517	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggctcacagactgatgacTcacaggggtcacagactgat	12	10	3	5	rs3767609	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	111957517	T	C	111957517	3	2	44	1	0	0	0	0	1	0	0	0	11404	1551	54	2	434	2	OVGP1	1	111957517	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	2471392	111957517	137293104	6	4261											
CGN	57530	bcgsc.ca	37	chr1	151497210	151497210	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggggaaacagcgagtagagGagcagctgaggctgcgggag	20	6	0	2	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	151497210	G	T	151497210	4	4	44	1	0	0	0	0	0	1	0	0	3332	1175	41	5	1488	5	CGN	1	151497210	Nonsense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	39539693	151497210	97753411	7	4262											
ATP8B2	57198	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	154315638	154315638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgagggggccctggtcacCgcagccaggaactttggttt	15	10	1	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	154315638	C	T	154315638	2	4	44	1	0	0	0	0	0	0	0	1	1199	639	23	1		1	ATP8B2	1	154315638	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	2818428	154315638	94934983	8	4263											
CD5L	922	mdanderson.org;bcgsc.ca	37	chr1	157805692	157805692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttgctcacactgagcCaatgtatcttctgttcctgt	6	12	5	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	157805692	C	G	157805692	3	3	44	1	0	0	0	0	1	0	0	0	3056	593	21	5	750	5	CD5L	1	157805692	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	3490054	157805692	91444929	9	4264											
IGFN1	91156	bcgsc.ca	37	chr1	201181673	201181673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctagggtctggatatgaacGggacatctggaaagcaggcc	14	8	3	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	201181673	G	A	201181673	3	1	44	1	0	0	0	0	1	0	0	0	7651	1116	39	1	7694	1	IGFN1	1	201181673	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	43375981	201181673	48068948	10	4265											
TEKT4	150483	ucsc.edu	37	chr2	95542418	95542419	+	Missense_Mutation	DNP	TG	TG	CA													atgagcctggagaaggacatTgccgccatgaccaacagtct					rs75603622		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		CA	95542419	TG	CA	95542418	3	2	44	1	0	0	0	0	1	0	0	0	15859	1800	63	4	1234	4	TEKT4	2	95542418	Missense_Mutation	DNP	TG	TCGA-KN-8429-01A-11D-2310-10		95542418	147656955	11	4266											
IL1R2	7850	bcgsc.ca	37	chr2	102626112	102626112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagccctgaggtgcccccaGgtgccctactggttgtgggc	15	13	0	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	102626112	G	T	102626112	3	4	44	1	0	0	0	0	1	0	0	0	7720	991	35	5	162	5	IL1R2	2	102626112	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	7083694	102626112	140573261	12	4267											
POTEF	728378	mdanderson.org	37	chr2	130872871	130872871	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agttttactacttctgaattCccattggcagaggccagatg	9	9	1	3	rs199770435		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	130872871	C	T	130872871	2	4	44	1	0	0	0	0	0	0	0	1	12345	842	30	3		3	POTEF	2	130872871	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	28246759	130872871	112326502	13	4268											
PASK	23178	mdanderson.org	37	chr2	242080064	242080064	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggacacactgccccgcgGttcggacgggtccgtgtgct	15	14	0	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	242080064	G	T	242080064	3	4	44	1	0	0	0	0	1	0	0	0	11551	1261	44	5	3734	5	PASK	2	242080064	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	111207193	242080064	1119309	14	4269											
HDAC11	79885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	13544436	13544436	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagcgtgtgtacatcatggAtgtctacaaccgccacatct	8	12	3	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	13544436	A	G	13544436	3	3	44	1	0	0	0	0	1	0	0	0	7064	333	12	4	635	4	HDAC11	3	13544436	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		13544436	184477994	15	4270											
LRRIQ4	344657	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	169540071	169540071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttcctccacgccctgcGcgagctccggctctaccaga	9	19	1	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	169540071	G	A	169540071	3	1	44	1	0	0	0	0	1	0	0	0	9103	1087	38	1	364	1	LRRIQ4	3	169540071	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	155995635	169540071	28482359	16	4271											
TP63	8626	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	189526226	189526226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctctctctccatcacccGccatcccctccaacaccgac	3	22	3	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	189526226	G	A	189526226	3	1	44	1	0	0	0	0	1	0	0	0	16497	1087	38	1	550	1	TP63	3	189526226	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	19986155	189526226	8496204	17	4272											
MUC4	4585	mdanderson.org	37	chr3	195508997	195508997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtcggtgacaggaagagGggtggtgtcacctgtggatg	19	5	1	2	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	195508997	G	A	195508997	3	1	44	1	0	0	0	0	1	0	0	0	10056	1232	43	3		3	MUC4	3	195508997	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	5982771	195508997	2513433	18	4273			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	broad.mit.edu	37	chr3	195509691	195509691	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctgacctgtggatgcTgaggaagtgtcggtgacagg	18	7	0	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	195509691	T	A	195509691	2	1	44	1	0	0	0	0	0	0	0	1	10056	1567	55	5		5	MUC4	3	195509691	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10	694	195509691	2512739	19	4274			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	chr3	195510121	195510121	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatActgaggaagtgttggtgaca	18	5	0	3	rs7374898		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	195510121	A	G	195510121	3	3	44	1	0	0	0	0	1	0	0	0	10056	391	14	2		2	MUC4	3	195510121	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	430	195510121	2512309	20	4275			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	chr3	195510133	195510133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggatactgaggaagtgTtggtgacaggaagaggggtg	19	3	0	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	195510133	T	C	195510133	3	2	44	1	0	0	0	0	1	0	0	0	10056	1725	60	2		2	MUC4	3	195510133	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	12	195510133	2512297	21	4276			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	chr3	195510146	195510146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagtgttggtgacaggaaGaggggtggcgtgacctgtgg	21	4	0	3	rs199750921		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	195510146	G	C	195510146	3	2	44	1	0	0	0	0	1	0	0	0	10056	942	33	5		5	MUC4	3	195510146	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	13	195510146	2512284	22	4277			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	chr3	195511093	195511093	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggatgctgaggaagtgCtggtgacaggaagaggggtg	20	4	0	3	rs402405		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	195511093	C	T	195511093	3	4	44	1	0	0	0	0	1	0	0	0	10056	797	28	4		4	MUC4	3	195511093	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	947	195511093	2511337	23	4278			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
MUC4	4585	mdanderson.org	37	chr3	195511283	195511283	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggatgctgaggaagCgtcggtgacaggaagagggg	19	6	0	3	rs34000993	alternate_allele	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	195511283	C	G	195511283	3	3	44	1	0	0	0	0	1	0	0	0	10056	768	27	5		5	MUC4	3	195511283	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	190	195511283	2511147	24	4279			1	39		7	7	2287	N	T_G_C_A	2.404039e-17
LGI2	55203	hgsc.bcm.edu;ucsc.edu	37	chr4	25005583	25005583	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcgatatcaacaaactcCgcatccgtgtccctgaacca	5	16	1	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	25005583	C	T	25005583	2	4	44	1	0	0	0	0	0	0	0	1	8815	639	23	1		1	LGI2	4	25005583	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10		25005583	166148693	25	4280											
ADAMTS3	9508	broad.mit.edu;mdanderson.org	37	chr4	73205262	73205262	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgtgctctttgccatggaaAcggaccacagagtcatccac	9	13	2	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	73205262	A	G	73205262	2	3	44	1	0	0	0	0	0	0	0	1	267	30	2	2		2	ADAMTS3	4	73205262	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10	48199679	73205262	117949014	26	4281											
C4orf17	84103	broad.mit.edu;mdanderson.org	37	chr4	100460404	100460404	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaagaaacacctcaatggAaccagcagcagagactggga	11	10	1	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	100460404	A	C	100460404	3	2	44	1	0	0	0	0	1	0	0	0	2273	246	9	5	735	5	C4orf17	4	100460404	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	27255142	100460404	90693872	27	4282											
TBCK	93627	broad.mit.edu	37	chr4	107154198	107154198	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagttcatcgtactgatgAcagcgaggaatatccacttc	8	10	1	2	rs149535149		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	107154198	A	G	107154198	2	3	44	1	0	0	0	0	0	0	0	1	15740	273	10	2		2	TBCK	4	107154198	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10	6693794	107154198	84000078	28	4283											
TERT	7015	broad.mit.edu	37	chr5	1294102	1294102	+	Frame_Shift_Del	DEL	C	C	-													ggcccgcgtggtgctggcggCccacggatgggtgggagtgg					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		-	1294102	C	-	1294102	7	5	44	1	0	1	0	1	0	0	0	0	15868	739	26	0	2559	0	TERT	5	1294102	Frame_Shift_Del	DEL	C	TCGA-KN-8429-01A-11D-2310-10		1294102	179621158	29	4284											
ERAP2	64167	bcgsc.ca	37	chr5	96232568	96232568	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggagcagtctgtcaaatGtaagtcatatgttgggtaac	12	5	3	0	rs75364820		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	96232568	G	A	96232568	5	1	44	1	0	0	0	0	0	0	1	0	5243	1391	48	4	1534	4	ERAP2	5	96232568	Splice_Site	SNP	G	TCGA-KN-8429-01A-11D-2310-10	94938466	96232568	84682692	30	4285											
RNF145	153830	bcgsc.ca	37	chr5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatgttgttttttttttTctttttttttttcttggaga	6	4	2	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	158630640	T	C	158630640	3	2	44	1	0	0	0	0	1	0	0	0	13542	1792	62	4	2045	4	RNF145	5	158630640	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	62398072	158630640	22284620	31	4286											
ELMO1	9844	broad.mit.edu	37	chr7	37136306	37136306	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggacattcatgcttgtcTtctcgactactgttctcaag	8	10	4	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	37136306	T	C	37136306	2	2	44	1	0	0	0	0	0	0	0	1	5104	1606	56	2		2	ELMO1	7	37136306	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10		37136306	122002357	32	4287											
ATP6V0A4	50617	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	138437565	138437566	+	Missense_Mutation	DNP	CT	CT	GA													agcaggcgctggcggtgagaCtctgtttgtgttatgaccta					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		GA	138437566	CT	GA	138437565	3	3	44	1	0	0	0	0	1	0	0	0	1174	564	20	5	1736	5	ATP6V0A4	7	138437565	Missense_Mutation	DNP	CT	TCGA-KN-8429-01A-11D-2310-10	101301259	138437565	20701098	33	4288	97	2									
ATP6V0A4	50617	bcgsc.ca	37	chr7	138437566	138437566	+	Missense_Mutation	SNP	T	T	A													gcaggcgctggcggtgagacTctgtttgtgttatgacctat					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	138437566	T	A	138437566	3	1	44	1	0	0	0	0	1	0	0	0	1174	1551	54	5	1737	5	ATP6V0A4	7	138437566	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	1	138437566	20701097	34	4289	97	2									
MNX1	3110	hgsc.bcm.edu;bcgsc.ca	37	chr7	156799223	156799223	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctcgaagcgcttgggccGcgacaggtacttgttgagct	13	12	0	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	156799223	G	A	156799223	3	1	44	1	0	0	0	0	1	0	0	0	9757	1086	38	1	411	1	MNX1	7	156799223	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	18361657	156799223	2339440	35	4290											
PPP1R3B	79660	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	8998708	8998708	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cttctcaaatgcgaggttctGaaccttcacagtgcctgcaa	8	12	3	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	8998708	G	A	8998708	4	1	44	1	0	0	0	0	0	1	0	0	12457	1299	45	4	407	4	PPP1R3B	8	8998708	Nonsense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10		8998708	137365314	36	4291											
DOCK5	80005	bcgsc.ca	37	chr8	25178551	25178551	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tataagatttaccttccgacAcaggtcatctcaggaaagta	7	9	2	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	25178551	A	G	25178551	3	3	44	1	0	0	0	0	1	0	0	0	4727	159	6	2	1660	2	DOCK5	8	25178551	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	16179843	25178551	121185471	37	4292											
FBXO16	157574	broad.mit.edu	37	chr8	28321189	28321189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgtataaagataacacCcttggaagcttggttgtaaa	9	5	0	2	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	28321189	C	A	28321189	3	1	44	1	0	0	0	0	1	0	0	0	5778	622	22	5	620	5	FBXO16	8	28321189	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	3142638	28321189	118042833	38	4293											
ABCA1	19	hgsc.bcm.edu	37	chr9	107556793	107556794	+	Splice_Site	INS	-	-	A													attgatattattcagcttctINSaaaaaaaaaaaaaaaaaatg					rs5899617		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	107556794	-	A	107556793	8	5	44	1	0	1	1	0	0	0	1	0	28	1536	53	0	1448	0	ABCA1	9	107556793	Splice_Site	INS	-	TCGA-KN-8429-01A-11D-2310-10		107556793	33656638	39	4294											
CUL2	8453	hgsc.bcm.edu;bcgsc.ca	37	chr10	35320289	35320289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggataacccatgaattaaaCgttttgccagcattcttgcg	8	9	1	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	35320289	C	T	35320289	3	4	44	1	0	0	0	0	1	0	0	0	4086	536	19	1	944	1	CUL2	10	35320289	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10		35320289	100214458	40	4295											
TDRD1	56165	broad.mit.edu	37	chr10	115973824	115973824	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagtagatgttgtggtctgTgtgatatatagtcctggaga	13	4	1	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	115973824	T	C	115973824	2	2	44	1	0	0	0	0	0	0	0	1	15834	1702	59	2		2	TDRD1	10	115973824	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10	80653535	115973824	19560923	41	4296											
ANO9	338440	broad.mit.edu	37	chr11	421030	421030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggtccatcatgcagcCgctggcgtggcactgcgggg	17	11	1	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	421030	C	T	421030	3	4	44	1	0	0	0	0	1	0	0	0	704	652	23	1	971	1	ANO9	11	421030	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10		421030	134585486	42	4297											
MUC6	4588	broad.mit.edu	37	chr11	1018550	1018551	+	Frame_Shift_Ins	INS	-	-	G													cagtgacaggacctgtggaaINSgggacgggactccccgccgt					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	1018551	-	G	1018550	7	5	44	1	0	1	1	0	0	0	0	0	10058	59	3	0	3080	0	MUC6	11	1018550	Frame_Shift_Ins	INS	-	TCGA-KN-8429-01A-11D-2310-10	597520	1018550	133987966	43	4298											
OR52M1	119772	mdanderson.org	37	chr11	4566711	4566711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgtgacattggcctggaCgcctgcttgggccaaatgtt	13	10	0	1	rs2709182	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	4566711	C	T	4566711	2	4	44	1	0	0	0	0	0	0	0	1	11205	535	19	1		1	OR52M1	11	4566711	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	3548161	4566711	130439805	44	4299											
ANO3	63982	mdanderson.org	37	chr11	26569053	26569053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcaattgttggtttgtgCgttttcttctatggattatt	10	5	2	0	rs201539223		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	26569053	C	T	26569053	2	4	44	1	0	0	0	0	0	0	0	1	698	776	27	1		1	ANO3	11	26569053	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	22002342	26569053	108437463	45	4300											
OR5D18	219438	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	55587779	55587779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatgcgttcattgttgtaaCcatcctcaagatgcgttcag	8	9	3	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	55587779	C	T	55587779	3	4	44	1	0	0	0	0	1	0	0	0	11236	507	18	3	676	3	OR5D18	11	55587779	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	29018726	55587779	79418737	46	4301											
SF1	7536	mdanderson.org	37	chr11	64533401	64533401	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggtccatgggaggcggAggaggagggggcggggcata	24	5	0	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	64533401	A	C	64533401	2	2	44	1	0	0	0	0	0	0	0	1	14242	291	11	5		5	SF1	11	64533401	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10	8945622	64533401	70473115	47	4302											
FGF6	2251	ucsc.edu	37	chr12	4554715	4554715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccgggacatagtgatgaAcagtttctgtcccagggcca	11	12	1	2	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	4554715	A	G	4554715	3	3	44	1	0	0	0	0	1	0	0	0	5905	43	2	2	616	2	FGF6	12	4554715	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		4554715	129297180	48	4303											
DDX11	1663	mdanderson.org	37	chr12	31242416	31242416	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtggacatgcagagaaGcaggcacggtagccactggg	16	9	0	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	31242416	G	A	31242416	3	1	44	1	0	0	0	0	1	0	0	0	4375	971	34	4	898	4	DDX11	12	31242416	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	26687701	31242416	102609479	49	4304											
RPH3A	22895	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	113333605	113333605	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttctatgacatcaaacaCagtgacctggcaaagaagtc	7	9	2	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	113333605	C	G	113333605	3	3	44	1	0	0	0	0	1	0	0	0	13646	477	17	5	1955	5	RPH3A	12	113333605	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	82091189	113333605	20518290	50	4305											
TUBA3C	7278	mdanderson.org	37	chr13	19751292	19751292	+	Silent	SNP	T	T	C													tcgtggtaggccttctcggcTgagatgaccggggcgtaggt					rs147482964	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	19751292	T	C	19751292	2	2	44	1	0	0	0	0	0	0	0	1	16852	1567	55	2		2	TUBA3C	13	19751292	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10		19751292	95418586	51	4306	98	2									
TUBA3C	7278	mdanderson.org	37	chr13	19751301	19751301	+	Silent	SNP	C	C	T													gccttctcggctgagatgacCggggcgtaggtggccagggg					rs140548354	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	19751301	C	T	19751301	2	4	44	1	0	0	0	0	0	0	0	1	16852	639	23	1		1	TUBA3C	13	19751301	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	9	19751301	95418577	52	4307	98	2									
MLNR	2862	broad.mit.edu	37	chr13	49794805	49794805	+	Frame_Shift_Del	DEL	G	G	-													ggtgttcgggccgctgctctGccgcctgtccctctacgtgg					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		-	49794805	G	-	49794805	7	5	44	1	0	1	0	1	0	0	0	0	9709	1319	46	0	334	0	MLNR	13	49794805	Frame_Shift_Del	DEL	G	TCGA-KN-8429-01A-11D-2310-10	30043504	49794805	65375073	53	4308											
DACT1	51339	mdanderson.org	37	chr14	59112179	59112179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgctgtggctgtgcagAgcccaatgtttctcctttgt	10	10	2	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	59112179	A	G	59112179	3	3	44	1	0	0	0	0	1	0	0	0	4254	304	11	2	852	2	DACT1	14	59112179	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		59112179	48237361	54	4309											
ENTPD5	957	broad.mit.edu	37	chr14	74443082	74443082	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccccctaggtccaaggtcCccacagtctcctgtctgtgg	9	17	2	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	74443082	C	T	74443082	3	4	44	1	0	0	0	0	1	0	0	0	5181	623	22	3	731	3	ENTPD5	14	74443082	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	15330903	74443082	32906458	55	4310											
EPB42	2038	broad.mit.edu	37	chr15	43499534	43499534	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcacagcacttccagaccAcacatgaggcatttatggca	7	14	1	2	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	43499534	A	G	43499534	3	3	44	1	0	0	0	0	1	0	0	0	5197	159	6	2	914	2	EPB42	15	43499534	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		43499534	59031858	56	4311											
THSD4	79875	mdanderson.org	37	chr15	72040774	72040774	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcagtgctcggtgccctgCggcgtgggacagaggacccg	16	12	1	1	rs1872056	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	72040774	C	T	72040774	2	4	44	1	0	0	0	0	0	0	0	1	15982	776	27	1		1	THSD4	15	72040774	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	28541240	72040774	30490618	57	4312											
RASGRF1	5923	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	79324635	79324635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttggtagatgttgagcatggGcagcaggatgtcaaataggt	15	4	1	2	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	79324635	G	A	79324635	3	1	44	1	0	0	0	0	1	0	0	0	13164	1203	42	3	2927	3	RASGRF1	15	79324635	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	7283861	79324635	23206757	58	4313											
DHX8	1659	broad.mit.edu	37	chr17	41585844	41585844	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actctgctcttcccagtgagAtgcagacccgaatctttgac	8	13	3	3	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	41585844	A	G	41585844	3	3	44	1	0	0	0	0	1	0	0	0	4552	333	12	4	2520	4	DHX8	17	41585844	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10		41585844	39609366	59	4314											
CRHR1	1394	hgsc.bcm.edu	37	chr17	43910515	43910515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttctaggtgctggtttgGcaaaaggcctggggtgtaca	15	8	1	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	43910515	G	A	43910515	3	1	44	1	0	0	0	0	1	0	0	0	3900	1203	42	3	907	3	CRHR1	17	43910515	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10	2324671	43910515	37284695	60	4315											
USP32	84669	mdanderson.org	37	chr17	58292024	58292024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatatcttcctctttaatgCgcagcctttgagatagatat	7	9	2	2	rs62069141	bycluster	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	58292024	C	T	58292024	3	4	44	1	0	0	0	0	1	0	0	0	17169	768	27	1	2907	1	USP32	17	58292024	Missense_Mutation	SNP	C	TCGA-KN-8429-01A-11D-2310-10	14381509	58292024	22903186	61	4316											
ADCYAP1	116	mdanderson.org	37	chr18	907675	907675	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggccagaggaagaggcGtacggcgaggacggaaaccc	17	11	0	2	rs8192597	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	907675	G	A	907675	2	1	44	1	0	0	0	0	0	0	0	1	302	1132	40	1		1	ADCYAP1	18	907675	Silent	SNP	G	TCGA-KN-8429-01A-11D-2310-10		907675	77169573	62	4317											
ANKRD30B	374860	broad.mit.edu	37	chr18	14837637	14837637	+	Frame_Shift_Del	DEL	G	G	-													agatgcccacatcagaattaGgaagaaaagaagatacaaaa					novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		-	14837637	G	-	14837637	7	5	44	1	0	1	0	1	0	0	0	0	659	1001	35	0	2711	0	ANKRD30B	18	14837637	Frame_Shift_Del	DEL	G	TCGA-KN-8429-01A-11D-2310-10	13929962	14837637	63239611	63	4318											
MUC16	94025	mdanderson.org	37	chr19	9025604	9025604	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcacctgagcaaggtcaAtctgcagccagagtacagag	10	11	3	3	rs200791776		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	9025604	A	G	9025604	2	3	44	1	0	0	0	0	0	0	0	1	10051	98	4	4		4	MUC16	19	9025604	Silent	SNP	A	TCGA-KN-8429-01A-11D-2310-10		9025604	50103379	64	4319											
ZNF653	115950	broad.mit.edu;ucsc.edu	37	chr19	11598244	11598244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcccagtccactgccggggAcaccgctgcctgctgccatg	12	18	0	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	11598244	A	G	11598244	3	3	44	1	0	0	0	0	1	0	0	0	18171	275	10	2	837	2	ZNF653	19	11598244	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	2572640	11598244	47530739	65	4320											
OR10H2	26538	mdanderson.org	37	chr19	15839047	15839047	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtacctcttcctgtgcgTcctctcagtctccgagatcc	7	16	3	1	rs74729097		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	15839047	T	C	15839047	3	2	44	1	0	0	0	0	1	0	0	0	10985	1667	58	2	196	2	OR10H2	19	15839047	Missense_Mutation	SNP	T	TCGA-KN-8429-01A-11D-2310-10	4240803	15839047	43289936	66	4321											
TMEM91	641649	broad.mit.edu	37	chr19	41884219	41884219	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtttccccaaagccatggAcagccctagtcttcgtgagc	10	13	1	1	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		G	41884219	A	G	41884219	3	3	44	1	0	0	0	0	1	0	0	0	16324	275	10	2	7	2	TMEM91	19	41884219	Missense_Mutation	SNP	A	TCGA-KN-8429-01A-11D-2310-10	26045172	41884219	17244764	67	4322											
ZNF418	147686	mdanderson.org	37	chr19	58439306	58439306	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacacatttcacaagagtgGgccttcttgggagacacacc	9	13	2	2	rs7253514	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	58439306	G	A	58439306	2	1	44	1	0	0	0	0	0	0	0	1	18000	1219	43	3		3	ZNF418	19	58439306	Silent	SNP	G	TCGA-KN-8429-01A-11D-2310-10	16555087	58439306	689677	68	4323											
MN1	4330	hgsc.bcm.edu	37	chr22	28194900	28194900	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctgctgctgctgctgctgTtgctgttgctgttgctgctg	14	11	0	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	28194900	T	C	28194900	2	2	44	1	0	0	0	0	0	0	0	1	9751	1722	60	2		2	MN1	22	28194900	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10		28194900	23109666	69	4324			2	40		3	3	28	N	T_C	1.743724e-09
MN1	4330	mdanderson.org	37	chr22	28194912	28194912	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgttgctgttgctgTtgctgctgctgctgctgctg	14	10	0	0	rs45520238	byfrequency	TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		C	28194912	T	C	28194912	2	2	44	1	0	0	0	0	0	0	0	1	9751	1722	60	2		2	MN1	22	28194912	Silent	SNP	T	TCGA-KN-8429-01A-11D-2310-10	12	28194912	23109654	70	4325			2	40		3	3	28	N	T_C	1.743724e-09
MN1	4330	mdanderson.org	37	chr22	28194927	28194927	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgctgctgCtgctgttgctgctgctgctg	14	11	0	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		T	28194927	C	T	28194927	2	4	44	1	0	0	0	0	0	0	0	1	9751	796	28	4		4	MN1	22	28194927	Silent	SNP	C	TCGA-KN-8429-01A-11D-2310-10	15	28194927	23109639	71	4326			2	40		3	3	28	N	T_C	1.743724e-09
PLXNB3	5365	bcgsc.ca	37	chrX	153035378	153035378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgccgggccaccacccccGccaggagcagggccaggtaa	14	17	0	0	novel		TCGA-KN-8429-01A-11D-2310-10	TCGA-KN-8429-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	58c7e9c3-1345-48c0-a758-0887358b8696	8a9aade0-01c0-49a8-9a47-1498341edff7		A	153035378	G	A	153035378	3	1	44	1	0	0	0	0	1	0	0	0	12205	1087	38	1	1753	1	PLXNB3	23	153035378	Missense_Mutation	SNP	G	TCGA-KN-8429-01A-11D-2310-10		153035378	2235182	72	4327											
ARHGEF19	128272	broad.mit.edu	37	chr1	16525737	16525737	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgtcctaacacactgaAcctgggggcaatctgacagc	10	11	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	16525737	A	G	16525737	3	3	45	1	0	0	0	0	1	0	0	0	904	43	2	2	257	2	ARHGEF19	1	16525737	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10		16525737	232724884	1	4328											
RCAN3	11123	hgsc.bcm.edu;bcgsc.ca	37	chr1	24861635	24861635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgacacccagcgtggtggtTcatgtctgtgaaagtgaaac	12	9	2	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	24861635	T	C	24861635	3	2	45	1	0	0	0	0	1	0	0	0	13262	1770	62	4	608	4	RCAN3	1	24861635	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	8335898	24861635	224388986	2	4329											
CELSR2	1952	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	109805471	109805471	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctactaggcggggtgcctGacctgcccgagagcttccca	13	14	0	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	109805471	G	T	109805471	3	4	45	1	0	0	0	0	1	0	0	0	3251	1290	45	5	4614	5	CELSR2	1	109805471	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	84943836	109805471	139445150	3	4330											
NBPF16	728936	ucsc.edu	37	chr1	148756448	148756448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccttttccaggctcaacGgcgtgctgatggaagtggaa	12	10	2	1	rs201036679		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	148756448	G	A	148756448	3	1	45	1	0	0	0	0	1	0	0	0	10275	1116	39	1	3908	1	NBPF16	1	148756448	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	38950977	148756448	100494173	4	4331											
CENPF	1063	broad.mit.edu	37	chr1	214815136	214815136	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttaatgacttattacaagAgaatgaacagctgatgaagg	10	4	0	5	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	214815136	A	G	214815136	3	3	45	1	0	0	0	0	1	0	0	0	3260	304	11	2	3497	2	CENPF	1	214815136	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	66058688	214815136	34435485	5	4332											
ALLC	55821	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr2	3743874	3743874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attttctgtaggagttggcgGggcaaagtctatggcggatg	16	5	2	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	3743874	G	A	3743874	3	1	45	1	0	0	0	0	1	0	0	0	534	1232	43	3	707	3	ALLC	2	3743874	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		3743874	239455499	6	4333											
LIPT1	51601	broad.mit.edu	37	chr2	99778524	99778524	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgggctcattttacAgtcaatttccaatgatgtct	6	7	3	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	99778524	A	T	99778524	3	4	45	1	0	0	0	0	1	0	0	0	8893	188	7	5	106	5	LIPT1	2	99778524	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	96034650	99778524	143420849	7	4334											
GPR148	344561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	131486934	131486934	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggctgtcagccccctgctGctggtgaccatcctgcggaa	12	15	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	131486934	G	A	131486934	2	1	45	1	0	0	0	0	0	0	0	1	6710	1306	46	4		4	GPR148	2	131486934	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	31708410	131486934	111712439	8	4335											
LCT	3938	broad.mit.edu;mdanderson.org	37	chr2	136558375	136558375	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagtgccaggcctattggaGactcctggaaacatacacat	10	11	0	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	136558375	G	A	136558375	2	1	45	1	0	0	0	0	0	0	0	1	8755	929	33	4		4	LCT	2	136558375	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	5071441	136558375	106640998	9	4336											
GAD1	2571	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr2	171709233	171709233	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctttcagggccaactcAgtcacctggaaccctcacaa	7	15	5	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	171709233	A	C	171709233	2	2	45	1	0	0	0	0	0	0	0	1	6231	175	7	5		5	GAD1	2	171709233	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	35150858	171709233	71490140	10	4337											
TTN	7273	broad.mit.edu	37	chr2	179426292	179426292	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctttatactcaagatgAtagccaattactcgacttcc	4	11	2	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	179426292	A	G	179426292	2	3	45	1	0	0	0	0	0	0	0	1	16841	340	12	4		4	TTN	2	179426292	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	7717059	179426292	63773081	11	4338											
FANCD2	2177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	10107113	10107113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctggctccgtatttccGgttactgagactttgtgtgg	13	9	0	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	10107113	G	A	10107113	3	1	45	1	0	0	0	0	1	0	0	0	5714	1116	39	1	2294	1	FANCD2	3	10107113	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		10107113	187915317	12	4339											
C3orf20	84077	broad.mit.edu;hgsc.bcm.edu	37	chr3	14724245	14724246	+	Frame_Shift_Ins	INS	-	-	A													ttacatcaagagtaacctagINSaattatatcagcaatacaca					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	14724246	-	A	14724245	7	5	45	1	0	1	1	0	0	0	0	0	2233	943	33	0	27	0	C3orf20	3	14724245	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	4617132	14724245	183298185	13	4340	99	2									
C3orf20	84077	bcgsc.ca	37	chr3	14724246	14724247	+	Frame_Shift_Ins	INS	-	-	A													tacatcaagagtaacctagaINSattatatcagcaatacacag					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	14724247	-	A	14724246	7	5	45	1	0	1	1	0	0	0	0	0	2233	246	9	0	28	0	C3orf20	3	14724246	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	1	14724246	183298184	14	4341	99	2									
DAZL	1618	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	16630168	16630168	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	actagataagccaggaggatCaaacagatttaagcattgcc	9	8	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	16630168	C	G	16630168	3	3	45	1	0	0	0	0	1	0	0	0	4278	837	29	5	4	5	DAZL	3	16630168	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	1905922	16630168	181392262	15	4342											
DAZL	1618	hgsc.bcm.edu;mdanderson.org	37	chr3	16630220	16630221	+	Splice_Site	DNP	CC	CC	TT													aaagtgatgcactcttttatCctggaaaagacagaaagagt					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		TT	16630221	CC	TT	16630220	5	4	45	1	0	0	0	0	0	0	1	0	4278	869	30	3	56	3	DAZL	3	16630220	Splice_Site	DNP	CC	TCGA-KN-8430-01A-11D-2310-10	52	16630220	181392210	16	4343	100	2									
DAZL	1618	bcgsc.ca	37	chr3	16630221	16630221	+	Splice_Site	SNP	C	C	T													aagtgatgcactcttttatcCtggaaaagacagaaagagtc					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	16630221	C	T	16630221	5	4	45	1	0	0	0	0	0	0	1	0	4278	695	24	4	57	4	DAZL	3	16630221	Splice_Site	SNP	C	TCGA-KN-8430-01A-11D-2310-10	1	16630221	181392209	17	4344	100	2									
SMARCC1	6599	hgsc.bcm.edu	37	chr3	47823126	47823126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcccagccagacccgcacCgaatccagctgggacaccgt	10	17	0	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	47823126	C	T	47823126	2	4	45	1	0	0	0	0	0	0	0	1	14873	639	23	1		1	SMARCC1	3	47823126	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	31192905	47823126	150199304	18	4345											
PBRM1	55193	mdanderson.org;bcgsc.ca	37	chr3	52643600	52643600	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgggacatgagagtcctcatCtccctccaggtctctgcgtg	11	13	3	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	52643600	C	A	52643600	3	1	45	1	0	0	0	0	1	0	0	0	11570	913	32	5	2664	5	PBRM1	3	52643600	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	4820474	52643600	145378830	19	4346											
CACNA1D	776	broad.mit.edu	37	chr3	53844075	53844075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcactcgacccggtcgtGggccacccctccagcaaccc	10	19	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	53844075	G	T	53844075	3	4	45	1	0	0	0	0	1	0	0	0	2566	1357	47	5	6300	5	CACNA1D	3	53844075	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	1200475	53844075	144178355	20	4347											
OR5H14	403273	mdanderson.org	37	chr3	97868391	97868391	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatctggaaagaccctcaTcttcatatcccaatgtactt	5	12	5	1	rs143765725		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	97868391	T	C	97868391	2	2	45	1	0	0	0	0	0	0	0	1	11239	1432	50	4		4	OR5H14	3	97868391	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	44024316	97868391	100154039	21	4348											
STAG1	10274	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	136076575	136076575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aacttacactgtctttttgtCctgtcgaagaagtttagaag	8	7	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	136076575	C	T	136076575	3	4	45	1	0	0	0	0	1	0	0	0	15342	855	30	3	752	3	STAG1	3	136076575	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	38208184	136076575	61945855	22	4349											
MUC4	4585	mdanderson.org	37	chr3	195505762	195505762	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctgtggatactgaggaaAggctggtgacaggaagaggg	18	5	0	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	195505762	A	G	195505762	3	3	45	1	0	0	0	0	1	0	0	0	10056	72	3	2		2	MUC4	3	195505762	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	59429187	195505762	2516668	23	4350			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	chr3	195507059	195507059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtggatgctgaggaagTgtcggtgacaggaagagggg	19	5	0	3	rs76367261		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	195507059	T	C	195507059	3	2	45	1	0	0	0	0	1	0	0	0	10056	1696	59	2		2	MUC4	3	195507059	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	1297	195507059	2515371	24	4351			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	chr3	195507926	195507926	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggatgctgaggaagcgcCggtgacaggaagagtgctgg	20	6	0	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	195507926	C	T	195507926	3	4	45	1	0	0	0	0	1	0	0	0	10056	652	23	1		1	MUC4	3	195507926	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	867	195507926	2514504	25	4352			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	chr3	195508982	195508982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggatgctgaggaagtgtCggtgacaggaagaggggtgg	21	3	0	3	rs79543693	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	195508982	C	T	195508982	3	4	45	1	0	0	0	0	1	0	0	0	10056	884	31	1		1	MUC4	3	195508982	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	1056	195508982	2513448	26	4353			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	chr3	195509142	195509142	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctagtgacaggaagaggCgtggtgtcacctgtggatac	17	7	1	2	rs12487058	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	195509142	C	G	195509142	2	3	45	1	0	0	0	0	0	0	0	1	10056	755	27	5		5	MUC4	3	195509142	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	160	195509142	2513288	27	4354			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	chr3	195511884	195511884	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagaggggtggcGtgacctgtggatgctgagga	20	5	0	4	rs71617318		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	195511884	G	C	195511884	3	2	45	1	0	0	0	0	1	0	0	0	10056	1136	40	5		5	MUC4	3	195511884	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	2742	195511884	2510546	28	4355			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
MUC4	4585	mdanderson.org	37	chr3	195511911	195511911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagtgtcGgtgacaggaagagaggtggc	20	4	0	3	rs200732241		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	195511911	G	A	195511911	2	1	45	1	0	0	0	0	0	0	0	1	10056	1103	39	1		1	MUC4	3	195511911	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	27	195511911	2510519	29	4356			1	41		7	7	6150	N	T_G_C_A	1.737903e-13
SLC26A1	10861	mdanderson.org	37	chr4	985339	985339	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcgtggcggggagcaggtcCtgcaccagcgcccggacgca	17	15	0	0	rs200471470	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	985339	C	G	985339	3	3	45	1	0	0	0	0	1	0	0	0	14612	680	24	5	2063	5	SLC26A1	4	985339	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		985339	190168937	30	4357											
KCTD8	386617	mdanderson.org	37	chr4	44176969	44176969	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggacagatttgtttcccgGgacttgctgatgagggtctg	14	7	1	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	44176969	G	C	44176969	2	2	45	1	0	0	0	0	0	0	0	1	8176	1219	43	5		5	KCTD8	4	44176969	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	43191630	44176969	146977307	31	4358											
KIAA1211	57482	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	57181970	57181970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcctcctgctggtgttcgcGagctcgggaagggtccggag	16	12	0	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	57181970	G	A	57181970	3	1	45	1	0	0	0	0	1	0	0	0	8276	1059	37	1	2320	1	KIAA1211	4	57181970	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	13005001	57181970	133972306	32	4359											
CCDC158	339965	broad.mit.edu	37	chr4	77305357	77305357	+	Frame_Shift_Del	DEL	T	T	-													catgctgtcatgttcacataTttttttgcctgaggcttctt					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	77305357	T	-	77305357	7	5	45	1	0	1	0	1	0	0	0	0	2816	1493	52	0	2811	0	CCDC158	4	77305357	Frame_Shift_Del	DEL	T	TCGA-KN-8430-01A-11D-2310-10	20123387	77305357	113848919	33	4360											
HERC5	51191	broad.mit.edu;mdanderson.org	37	chr4	89408222	89408222	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatttccatttttaggaCgcttcagaaaatgtacaatg	7	7	2	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	89408222	C	T	89408222	2	4	45	1	0	0	0	0	0	0	0	1	7119	535	19	1		1	HERC5	4	89408222	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	12102865	89408222	101746054	34	4361											
ADH1A	124	mdanderson.org	37	chr4	100203572	100203572	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagtcatttcctttagcacCtcctggatgggtttcttgta	8	10	3	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	100203572	C	T	100203572	2	4	45	1	0	0	0	0	0	0	0	1	307	680	24	4		4	ADH1A	4	100203572	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	10795350	100203572	90950704	35	4362											
COL25A1	84570	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	110221771	110221771	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tacattctgaaggtgcttctCttgcgattcttattttagcc	7	9	3	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	110221771	C	G	110221771	3	3	45	1	0	0	0	0	1	0	0	0	3713	913	32	5	1853	5	COL25A1	4	110221771	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	10018199	110221771	80932505	36	4363											
KIAA1109	84162	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	123265699	123265699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaagcaaaatggatactaCgttaataaatatatctggta	7	5	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	123265699	C	T	123265699	3	4	45	1	0	0	0	0	1	0	0	0	8269	536	19	1	13002	1	KIAA1109	4	123265699	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	13043928	123265699	67888577	37	4364											
FRG1	2483	mdanderson.org	37	chr4	190873411	190873411	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atacatgcactcgacaatggTctttttaccctgggagctcc	8	12	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	190873411	T	C	190873411	2	2	45	1	0	0	0	0	0	0	0	1	6098	1654	58	2		2	FRG1	4	190873411	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	67607712	190873411	280865	38	4365											
SDHA	6389	mdanderson.org	37	chr5	236676	236676	+	Missense_Mutation	SNP	G	G	A													ggacctggttgtctttggtcGggcatgtgccctgagcatcg					rs138277996	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	236676	G	A	236676	3	1	45	1	0	0	0	0	1	0	0	0	14060	1116	39	1	1432	1	SDHA	5	236676	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		236676	180678584	39	4366	101	2									
SDHA	6389	mdanderson.org	37	chr5	236678	236678	+	Missense_Mutation	SNP	G	G	A													acctggttgtctttggtcggGcatgtgccctgagcatcgaa					rs111387770	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	236678	G	A	236678	3	1	45	1	0	0	0	0	1	0	0	0	14060	1203	42	3	1434	3	SDHA	5	236678	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	2	236678	180678582	40	4367	101	2									
ZFR	51663	broad.mit.edu	37	chr5	32444365	32444372	+	Frame_Shift_Del	DEL	GCCCCGCT	GCCCCGCT	-													ccgcagccgccgccgccgccGccccgctgtgggtgaatcca					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	GCCCCGCT	GCCCCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	32444372	GCCCCGCT	-	32444365	7	5	45	1	0	1	0	1	0	0	0	0	17764	1087	38	0	3193	0	ZFR	5	32444365	Frame_Shift_Del	DEL	GCCCCGCT	TCGA-KN-8430-01A-11D-2310-10	32207687	32444365	148470895	41	4368	102	2									
ZFR	51663	bcgsc.ca	37	chr5	32444366	32444373	+	Frame_Shift_Del	DEL	GCCCCGCT	GCCCCGCT	-													cgcagccgccgccgccgccgCcccgctgtgggtgaatccaa					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	GCCCCGCT	GCCCCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	32444373	GCCCCGCT	-	32444366	7	5	45	1	0	1	0	1	0	0	0	0	17764	739	26	0	3194	0	ZFR	5	32444366	Frame_Shift_Del	DEL	GCCCCGCT	TCGA-KN-8430-01A-11D-2310-10	1	32444366	148470894	42	4369	102	2									
CMYA5	202333	broad.mit.edu	37	chr5	79025641	79025641	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattcaagtagtggcagagcAgaacaaggaatacagctcag	11	7	2	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	79025641	A	G	79025641	2	3	45	1	0	0	0	0	0	0	0	1	3619	175	7	2		2	CMYA5	5	79025641	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	46581275	79025641	101889619	43	4370											
DMXL1	1657	broad.mit.edu	37	chr5	118505983	118505983	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcattttggatcatctgatAcattttccacacatatgagc	6	9	3	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	118505983	A	G	118505983	3	3	45	1	0	0	0	0	1	0	0	0	4631	391	14	2	5591	2	DMXL1	5	118505983	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	39480342	118505983	62409277	44	4371											
VEGFA	7422	broad.mit.edu	37	chr6	43746626	43746626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctccctacccattgcagAccaaagaaagatagagcaag	7	12	1	4	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	43746626	A	G	43746626	2	3	45	1	0	0	0	0	0	0	0	1	17256	289	10	2		2	VEGFA	6	43746626	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10		43746626	127368441	45	4372											
CAPN11	11131	broad.mit.edu;bcgsc.ca	37	chr6	44150954	44150954	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcatcagctgtttcctgAggctaaagaccatgttcagt	9	10	3	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	44150954	A	G	44150954	3	3	45	1	0	0	0	0	1	0	0	0	2649	295	11	2	2198	2	CAPN11	6	44150954	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	404328	44150954	126964113	46	4373											
DST	667	broad.mit.edu	37	chr6	56422170	56422171	+	Frame_Shift_Ins	INS	-	-	A													gggtcaattgacaagggcccINSaagaacactgaccataagtt					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	56422171	-	A	56422170	7	5	45	1	0	1	1	0	0	0	0	0	4820	594	21	0	8977	0	DST	6	56422170	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	12271216	56422170	114692897	47	4374											
SAMD5	389432	broad.mit.edu	37	chr6	147830410	147830411	+	Frame_Shift_Ins	INS	-	-	C													ctctcgcggccacacgaccgINSccccccgcagcagggagctg					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	147830411	-	C	147830410	7	5	45	1	0	1	1	0	0	0	0	0	13918	1087	38	0	348	0	SAMD5	6	147830410	Frame_Shift_Ins	INS	-	TCGA-KN-8430-01A-11D-2310-10	91408240	147830410	23284657	48	4375											
TTLL2	83887	bcgsc.ca	37	chr6	167753795	167753795	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccgaatgaccgaacacaAcagtgttaaaccgtggcagc	9	11	0	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	167753795	A	G	167753795	3	3	45	1	0	0	0	0	1	0	0	0	16833	43	2	2	417	2	TTLL2	6	167753795	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	19923385	167753795	3361272	49	4376											
TRRAP	8295	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	98609129	98609129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgtccatgattgcggtcGcccggtgcttcgcccagcca	12	16	0	1	rs145619183		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	98609129	G	A	98609129	3	1	45	1	0	0	0	0	1	0	0	0	16706	1087	38	1	11453	1	TRRAP	7	98609129	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		98609129	60529534	50	4377											
MYL10	93408	hgsc.bcm.edu;mdanderson.org	37	chr7	101267298	101267298	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcctgggcgacagagccaGactctgtcaaacaaacaaat	9	12	2	2	rs186580198	by1000genomes	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	101267298	G	C	101267298	3	2	45	1	0	0	0	0	1	0	0	0	10122	933	33	5	529	5	MYL10	7	101267298	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	2658169	101267298	57871365	51	4378											
SSPO	23145	broad.mit.edu;mdanderson.org	37	chr7	149480236	149480236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacccagaaccagcaggaCgacttcctgacaccagccgg	9	16	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	149480236	C	T	149480236	2	4	45	1	0	0	0	0	0	0	0	1	15289	535	19	1		1	SSPO	7	149480236	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	48212938	149480236	9658427	52	4379											
NOM1	64434	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	156742689	156742689	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaagccgtaaggaactgagGaaggagaagcggcacctgcg	15	8	0	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	156742689	G	A	156742689	2	1	45	1	0	0	0	0	0	0	0	1	10609	1165	41	3		3	NOM1	7	156742689	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	7262453	156742689	2395974	53	4380											
CLN8	2055	broad.mit.edu;hgsc.bcm.edu	37	chr8	1728652	1728652	+	Frame_Shift_Del	DEL	G	G	-													actcagcagcttctcaatccGgtggactggaacttcgcaca					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	1728652	G	-	1728652	7	5	45	1	0	1	0	1	0	0	0	0	3575	1103	39	0	786	0	CLN8	8	1728652	Frame_Shift_Del	DEL	G	TCGA-KN-8430-01A-11D-2310-10		1728652	144635370	54	4381	103	2									
CLN8	2055	bcgsc.ca	37	chr8	1728653	1728653	+	Frame_Shift_Del	DEL	G	G	-													ctcagcagcttctcaatccgGtggactggaacttcgcacag					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	1728653	G	-	1728653	7	5	45	1	0	1	0	1	0	0	0	0	3575	1261	44	0	787	0	CLN8	8	1728653	Frame_Shift_Del	DEL	G	TCGA-KN-8430-01A-11D-2310-10	1	1728653	144635369	55	4382	103	2									
MTMR9	66036	broad.mit.edu	37	chr8	11162509	11162509	+	Frame_Shift_Del	DEL	A	A	-													cagtactaagctattaccacAaaaaaaatgggatggtaagt					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	11162509	A	-	11162509	7	5	45	1	0	1	0	1	0	0	0	0	10028	131	5	0	591	0	MTMR9	8	11162509	Frame_Shift_Del	DEL	A	TCGA-KN-8430-01A-11D-2310-10	9433856	11162509	135201513	56	4383											
NSMAF	8439	bcgsc.ca	37	chr8	59512397	59512397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggctattgactagaaaGctcacatcatcaccatagaa	6	10	4	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	59512397	G	T	59512397	3	4	45	1	0	0	0	0	1	0	0	0	10753	962	34	5	1444	5	NSMAF	8	59512397	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	48349888	59512397	86851625	57	4384											
SLC26A7	115111	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	92378833	92378833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagcaggtgaaaattaTctcaataaacaacccgcttg	7	11	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	92378833	T	C	92378833	3	2	45	1	0	0	0	0	1	0	0	0	14620	1435	50	4	1564	4	SLC26A7	8	92378833	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	32866436	92378833	53985189	58	4385											
RHPN1	114822	broad.mit.edu	37	chr8	144462920	144462920	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcgaccgtgaggatgacTtctgtgaggctgccgaggcc	15	11	1	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	144462920	T	C	144462920	3	2	45	1	0	0	0	0	1	0	0	0	13443	1609	56	2	1420	2	RHPN1	8	144462920	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	52084087	144462920	1901102	59	4386											
IFNA21	3452	mdanderson.org	37	chr9	21166520	21166520	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggccctcctattacccaggCtgtgggtctgaggcagatca	12	12	2	2	rs140583107		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	21166520	C	G	21166520	3	3	45	1	0	0	0	0	1	0	0	0	7599	797	28	5	481	5	IFNA21	9	21166520	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		21166520	120046911	60	4387											
FKTN	2218	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr9	108358893	108358893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctagaatggagctggtttGtcaaaatccaaaggaagccg	11	8	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	108358893	G	T	108358893	3	4	45	1	0	0	0	0	1	0	0	0	5968	1368	48	5	126	5	FKTN	9	108358893	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	87192373	108358893	32854538	61	4388											
RC3H2	54542	bcgsc.ca	37	chr9	125639808	125639808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcctcgtggacaaccccCttgctgtcgcaaatctcggc	9	15	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	125639808	C	T	125639808	3	4	45	1	0	0	0	0	1	0	0	0	13259	681	24	4	2438	4	RC3H2	9	125639808	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	17280915	125639808	15573623	62	4389											
LAMC3	10319	bcgsc.ca	37	chr9	133951292	133951292	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaacaccagctacgcgcTtctctggaatctgctggagg	10	14	2	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	133951292	T	C	133951292	3	2	45	1	0	0	0	0	1	0	0	0	8678	1609	56	2	3651	2	LAMC3	9	133951292	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	8311484	133951292	7262139	63	4390											
FRG2B	441581	mdanderson.org	37	chr10	135438998	135438998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccagtgcaagccctggaacGtcccctatggtgggcatcac	11	15	1	0	rs200937977		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	135438998	G	T	135438998	3	4	45	1	0	0	0	0	1	0	0	0	6099	1145	40	5	397	5	FRG2B	10	135438998	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		135438998	95749	64	4391											
FRG2B	441581	mdanderson.org	37	chr10	135439079	135439079	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgattttttattcaatgAcaagctgcactccttttctg	5	9	3	2	rs201410894		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	135439079	A	T	135439079	3	4	45	1	0	0	0	0	1	0	0	0	6099	275	10	5	478	5	FRG2B	10	135439079	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	81	135439079	95668	65	4392											
MUC6	4588	mdanderson.org	37	chr11	1018169	1018169	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctagtggggttgggagtaatCgtggtagtagaagttggggt	19	2	0	1	rs77647814	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	1018169	C	G	1018169	2	3	45	1	0	0	0	0	0	0	0	1	10058	871	31	5		5	MUC6	11	1018169	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10		1018169	133988347	66	4393											
MUC6	4588	mdanderson.org	37	chr11	1018348	1018348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgagcgttgttggtggagGaatggtacctgttggcgctg	17	6	0	1	rs202193006		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	1018348	G	A	1018348	3	1	45	1	0	0	0	0	1	0	0	0	10058	1174	41	3	2878	3	MUC6	11	1018348	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	179	1018348	133988168	67	4394											
MUC2	4583	broad.mit.edu	37	chr11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatcaccaccaccactaCggtgaccccaaccccaacac	3	22	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	1092953	C	T	1092953	3	4	45	1	0	0	0	0	1	0	0	0	10053	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	74605	1092953	133913563	68	4395											
MUC2	4583	mdanderson.org	37	chr11	1093047	1093047	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accccaaccccaacacccacTggcacacagaccccaacccc	3	24	0	1	rs12575208	bycluster;by2hit2allele;byhapmap	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	1093047	T	C	1093047	2	2	45	1	0	0	0	0	0	0	0	1	10053	1567	55	2		2	MUC2	11	1093047	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	94	1093047	133913469	69	4396											
WEE1	7465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	9610060	9610060	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcactcttcactgaccggAtggccactaggtccaccacc	9	16	2	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	9610060	A	T	9610060	3	4	45	1	0	0	0	0	1	0	0	0	17450	333	12	5	1894	5	WEE1	11	9610060	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	8517013	9610060	125396456	70	4397											
CD44	960	broad.mit.edu;bcgsc.ca	37	chr11	35226107	35226107	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaacagctacccagaaggAacagtggtttggcaacagat	11	8	0	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	35226107	A	G	35226107	3	3	45	1	0	0	0	0	1	0	0	0	3046	246	9	4	1240	4	CD44	11	35226107	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	25616047	35226107	99780409	71	4398											
SIPA1	6494	broad.mit.edu;bcgsc.ca	37	chr11	65409950	65409950	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagctccggacactccgtgGcaccatctcggaggacgcgc	12	16	2	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	65409950	G	C	65409950	3	2	45	1	0	0	0	0	1	0	0	0	14426	1203	42	5	834	5	SIPA1	11	65409950	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	30183843	65409950	69596566	72	4399											
MYO7A	4647	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	76917244	76917244	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacttccctgatgacactgaCgaggtgagggtcaccggctt	12	11	1	4	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	76917244	C	G	76917244	3	3	45	1	0	0	0	0	1	0	0	0	10160	535	19	5	5931	5	MYO7A	11	76917244	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	11507294	76917244	58089272	73	4400											
FAT3	120114	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	92543184	92543184	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cactacaacacctgtgtctaTgagaacacagccaccaaggc	7	14	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	92543184	T	A	92543184	4	1	45	1	0	0	0	0	0	1	0	0	5740	1471	51	5	9469	5	FAT3	11	92543184	Nonsense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	15625940	92543184	42463332	74	4401											
OR10G8	219869	mdanderson.org	37	chr11	123900385	123900385	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catgggccttccccatgcccCagcgctggacgcccccctct	9	21	1	0	rs149524303	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	123900385	C	A	123900385	3	1	45	1	0	0	0	0	1	0	0	0	10982	594	21	5	58	5	OR10G8	11	123900385	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	31357201	123900385	11106131	75	4402			2	42		2	2	27	N	G_C	9.49022e-05
OR10G8	219869	mdanderson.org	37	chr11	123900411	123900411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacgcccccctctttggaGtcttcctggtggtttacgtg	12	12	2	0	rs202220125		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	123900411	G	A	123900411	3	1	45	1	0	0	0	0	1	0	0	0	10982	1029	36	4	84	4	OR10G8	11	123900411	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	26	123900411	11106105	76	4403			2	42		2	2	27	N	G_C	9.49022e-05
ADAMTS8	11095	ucsc.edu;bcgsc.ca	37	chr11	130284611	130284611	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtgttggggcagtggcGgaaatccggcccaaagatct	16	8	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	130284611	G	A	130284611	3	1	45	1	0	0	0	0	1	0	0	0	272	1116	39	1	1308	1	ADAMTS8	11	130284611	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	6384200	130284611	4721905	77	4404											
TAS2R46	259292	mdanderson.org	37	chr12	11214005	11214005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctttcacccagtacctcaCatgccacaaaactgaaagaa	4	14	2	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	11214005	C	T	11214005	3	4	45	1	0	0	0	0	1	0	0	0	15683	478	17	4	44	4	TAS2R46	12	11214005	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		11214005	122637890	78	4405											
TAS2R30	259293	mdanderson.org	37	chr12	11286736	11286736	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggagatcttttgtctcttGacccactcaatggaatttac	7	9	3	2	rs112605675		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	11286736	G	C	11286736	2	2	45	1	0	0	0	0	0	0	0	1	15674	1277	45	5		5	TAS2R30	12	11286736	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	72731	11286736	122565159	79	4406											
PRB2	653247	mdanderson.org	37	chr12	11546751	11546751	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggggaccttgaggtttGttgcctccttgtgggggtgg	20	6	0	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	11546751	G	C	11546751	3	2	45	1	0	0	0	0	1	0	0	0	12532	1368	48	5	993	5	PRB2	12	11546751	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	260015	11546751	122305144	80	4407											
CDKN1B	1027	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	12871758	12871758	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaatttcccctgcgcttaGattcttctactcaaaacaaa	3	11	3	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	12871758	G	C	12871758	5	2	45	1	0	0	0	0	0	0	1	0	3188	956	33	5	481	5	CDKN1B	12	12871758	Splice_Site	SNP	G	TCGA-KN-8430-01A-11D-2310-10	1325007	12871758	120980137	81	4408											
KIF21A	55605	hgsc.bcm.edu;mdanderson.org	37	chr12	39735383	39735383	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcctcctcCtcttcttcatcctcatgatc	1	20	5	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	39735383	C	T	39735383	2	4	45	1	0	0	0	0	0	0	0	1	8349	680	24	4		4	KIF21A	12	39735383	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	26863625	39735383	94116512	82	4409											
TBK1	29110	broad.mit.edu	37	chr12	64873884	64873884	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggagtggagacatgcctgTttcttgcagtctttctcggt	12	9	3	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	64873884	T	C	64873884	3	2	45	1	0	0	0	0	1	0	0	0	15741	1725	60	2	816	2	TBK1	12	64873884	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	25138501	64873884	68978011	83	4410											
GPR133	283383	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	131593399	131593399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggaggacagcaagcaccGttactactatgggatgggat	14	8	0	0	rs141128784		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	131593399	G	A	131593399	3	1	45	1	0	0	0	0	1	0	0	0	6700	1145	40	1	2088	1	GPR133	12	131593399	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	66719515	131593399	2258496	84	4411											
SKA3	221150	hgsc.bcm.edu	37	chr13	21742126	21742126	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttttaacagagctgcttaCcttttattattcctcgcatt	4	11	0	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	21742126	C	A	21742126	5	1	45	1	0	0	0	0	0	0	1	0	14452	521	18	5	565	5	SKA3	13	21742126	Splice_Site	SNP	C	TCGA-KN-8430-01A-11D-2310-10		21742126	93427752	85	4412											
PABPC3	5042	bcgsc.ca	37	chr13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgatgaaagtggaaaatccAaaggatttggatttgtaagc	11	5	0	1	rs78826513	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	25671027	A	G	25671027	3	3	45	1	0	0	0	0	1	0	0	0	11444	131	5	4	693	4	PABPC3	13	25671027	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	3928901	25671027	89498851	86	4413											
PDS5B	23047	bcgsc.ca	37	chr13	33253045	33253045	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attgtctcatgaaccatcctGatttagcaaaagacttaaca	5	9	1	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	33253045	G	T	33253045	3	4	45	1	0	0	0	0	1	0	0	0	11771	1290	45	5	1070	5	PDS5B	13	33253045	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	7582018	33253045	81916833	87	4414											
ZNF219	51222	mdanderson.org	37	chr14	21560706	21560706	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgcctcacgttcgggctcCggctccggctccggctgggg	16	15	1	0	rs1065496	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	21560706	C	G	21560706	2	3	45	1	0	0	0	0	0	0	0	1	17878	639	23	5		5	ZNF219	14	21560706	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10		21560706	85788834	88	4415											
FLRT2	23768	mdanderson.org;bcgsc.ca	37	chr14	86087938	86087938	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcatttccctggggctctActcacaggtgtccaaactcc	7	14	3	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	86087938	A	G	86087938	3	3	45	1	0	0	0	0	1	0	0	0	5988	391	14	2	82	2	FLRT2	14	86087938	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	64527232	86087938	21261602	89	4416											
CLMN	79789	broad.mit.edu	37	chr14	95662949	95662949	+	Frame_Shift_Del	DEL	T	T	-													ccacatgtttccttttttccTtttttttactactgattgat					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	95662949	T	-	95662949	7	5	45	1	0	1	0	1	0	0	0	0	3571	1609	56	0	430	0	CLMN	14	95662949	Frame_Shift_Del	DEL	T	TCGA-KN-8430-01A-11D-2310-10	9575011	95662949	11686591	90	4417											
DEGS2	123099	mdanderson.org	37	chr14	100625902	100625902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagacccactcgaagtcgCtgcggctcgcgctgttgccc	12	15	0	1	rs7157599	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	100625902	C	T	100625902	3	4	45	1	0	0	0	0	1	0	0	0	4460	797	28	4	960	4	DEGS2	14	100625902	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	4962953	100625902	6723638	91	4418											
MYO9A	4649	mdanderson.org	37	chr15	72190902	72190902	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccccgtggagactgaagGccttcaggcaccaattctgt	11	12	2	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	72190902	G	T	72190902	2	4	45	1	0	0	0	0	0	0	0	1	10162	1190	42	5		5	MYO9A	15	72190902	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10		72190902	30340490	92	4419											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059622	2059622	+	Frame_Shift_Del	DEL	C	C	-													acaccgggtggtcgcagcggCcccagcgccgtggcctccag					rs11366527		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	2059622	C	-	2059622	7	5	45	1	0	1	0	1	0	0	0	0	18133	739	26	0	2637	0	ZNF598	16	2059622	Frame_Shift_Del	DEL	C	TCGA-KN-8430-01A-11D-2310-10		2059622	88295131	93	4420											
PKD1	5310	mdanderson.org	37	chr16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtctctgcctgcaggatgAgcatcatggcctccagcttg	12	12	2	1	rs201238819		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	2154573	A	C	2154573	3	2	45	1	0	0	0	0	1	0	0	0	12043	304	11	5	4924	5	PKD1	16	2154573	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	94951	2154573	88200180	94	4421											
ITGAD	3681	broad.mit.edu	37	chr16	31421837	31421837	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgtggacatgagggactCttacctgggtgagaaacggc	15	7	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	31421837	C	T	31421837	3	4	45	1	0	0	0	0	1	0	0	0	7945	913	32	4	1247	4	ITGAD	16	31421837	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	29267264	31421837	58932916	95	4422											
ZNF319	57567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	58031971	58031971	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcctgctgcctgcagggGtgcgtgttgtgggggctgca	17	11	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	58031971	G	C	58031971	3	2	45	1	0	0	0	0	1	0	0	0	17942	1261	44	5	1553	5	ZNF319	16	58031971	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	26610134	58031971	32322782	96	4423											
CDH16	1014	broad.mit.edu	37	chr16	66942345	66942345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggttgatccgggtcctTcttccttgacatggtccagt	11	11	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	66942345	T	C	66942345	3	2	45	1	0	0	0	0	1	0	0	0	3130	1792	62	4	53	4	CDH16	16	66942345	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	8910374	66942345	23412408	97	4424											
HPR	3250	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	72110892	72110892	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgggatcctaagctttgAtaagagctgtgctgtggctg	15	7	0	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	72110892	A	G	72110892	3	3	45	1	0	0	0	0	1	0	0	0	7395	333	12	4	977	4	HPR	16	72110892	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	5168547	72110892	18243861	98	4425											
WDR59	79726	broad.mit.edu	37	chr16	74976691	74976691	+	Frame_Shift_Del	DEL	T	T	-													tggtggcaaggcagttagcaTtttttttattccatttgacc					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	74976691	T	-	74976691	7	5	45	1	0	1	0	1	0	0	0	0	17414	1493	52	0	2525	0	WDR59	16	74976691	Frame_Shift_Del	DEL	T	TCGA-KN-8430-01A-11D-2310-10	2865799	74976691	15378062	99	4426											
AP2B1	163	ucsc.edu	37	chr17	34044214	34044214	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaatctgtatttctagAcactgtttccagcaagttgc	7	8	2	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	34044214	A	G	34044214	3	3	45	1	0	0	0	0	1	0	0	0	743	289	10	2	2705	2	AP2B1	17	34044214	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10		34044214	47150996	100	4427											
HEXDC	284004	broad.mit.edu	37	chr17	80377733	80377733	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	atttagaccttaaaggagctCcaccaaaggtctcgtacctc	7	12	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	80377733	C	A	80377733	3	1	45	1	0	0	0	0	1	0	0	0	7133	855	30	5	60	5	HEXDC	17	80377733	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	46333519	80377733	817477	101	4428											
SIGLEC15	284266	ucsc.edu	37	chr18	43418922	43418922	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgccaacagcctgggccgcTccgaggccagcgtctacctg	12	18	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	43418922	T	C	43418922	3	2	45	1	0	0	0	0	1	0	0	0	14408	1551	54	2	750	2	SIGLEC15	18	43418922	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10		43418922	34658326	102	4429											
PPAP2C	8612	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	288028	288028	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctgccttacaaggatgaCggtggccgtgatggtgaccc	13	12	0	3	rs148329482	bycluster;by1000genomes	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	288028	C	T	288028	3	4	45	1	0	0	0	0	1	0	0	0	12372	536	19	1	690	1	PPAP2C	19	288028	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10		288028	58840955	103	4430											
DPP9	91039	bcgsc.ca	37	chr19	4719881	4719881	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accttctccaacttccggtgTtctccttgtccaggcgcagt	8	15	2	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	4719881	T	C	4719881	3	2	45	1	0	0	0	0	1	0	0	0	4770	1725	60	2	2720	2	DPP9	19	4719881	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	4431853	4719881	54409102	104	4431											
MUC16	94025	mdanderson.org	37	chr19	9006370	9006370	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtcagtctgcagccagaAtacagagggccaacactggt	12	10	2	2	rs79341062	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	9006370	A	G	9006370	2	3	45	1	0	0	0	0	0	0	0	1	10051	108	4	4		4	MUC16	19	9006370	Silent	SNP	A	TCGA-KN-8430-01A-11D-2310-10	4286489	9006370	50122613	105	4432											
MUC16	94025	broad.mit.edu	37	chr19	9049341	9049341	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgactaatgaggctatcgTctttggttcaccaggagaaa	12	7	2	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	9049341	T	C	9049341	3	2	45	1	0	0	0	0	1	0	0	0	10051	1667	58	2	11553	2	MUC16	19	9049341	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10	42971	9049341	50079642	106	4433											
ANKLE1	126549	mdanderson.org	37	chr19	17393015	17393015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggcggggaccccaacgCtcggtaagatagagcctggg	15	12	0	2	rs1864116	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	17393015	C	T	17393015	3	4	45	1	0	0	0	0	1	0	0	0	632	797	28	4	218	4	ANKLE1	19	17393015	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	8343674	17393015	41735968	107	4434											
INSL3	3640	mdanderson.org	37	chr19	17932190	17932190	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcccccgcacacgcgcacTagcgcgcgtacgaagtggtg	15	15	0	0	rs1047233	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	17932190	T	C	17932190	2	2	45	1	0	0	0	0	0	0	0	1	7828	1509	53	2		2	INSL3	19	17932190	Silent	SNP	T	TCGA-KN-8430-01A-11D-2310-10	539175	17932190	41196793	108	4435											
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	31768447	31768447	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctgttgctcatcttgAaaagcatgctcatggggtcc	11	11	3	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		G	31768447	A	G	31768447	3	3	45	1	0	0	0	0	1	0	0	0	16730	246	9	4	997	4	TSHZ3	19	31768447	Missense_Mutation	SNP	A	TCGA-KN-8430-01A-11D-2310-10	13836257	31768447	27360536	109	4436											
ZFP30	22835	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	38127148	38127148	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	accttccactgagataagttCatttcataaatatcctttcc	3	11	2	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	38127148	C	A	38127148	3	1	45	1	0	0	0	0	1	0	0	0	17749	826	29	5	1269	5	ZFP30	19	38127148	Missense_Mutation	SNP	C	TCGA-KN-8430-01A-11D-2310-10	6358701	38127148	21001835	110	4437											
NR1H2	7376	ucsc.edu	37	chr19	50881825	50881825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaagaagattcggaaacaGcagcaggagtcacagtcaca	11	8	2	3	rs55817866	byfrequency	TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	50881825	G	A	50881825	2	1	45	1	0	0	0	0	0	0	0	1	10696	962	34	4		4	NR1H2	19	50881825	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	12754677	50881825	8247158	111	4438											
LILRA1	11024	mdanderson.org	37	chr19	55106239	55106239	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagacccaggagtaccgtctGtatagagaaaagaaaacagc	11	8	1	3	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	55106239	G	A	55106239	2	1	45	1	0	0	0	0	0	0	0	1	8847	1364	48	4		4	LILRA1	19	55106239	Silent	SNP	G	TCGA-KN-8430-01A-11D-2310-10	4224414	55106239	4022744	112	4439											
COL20A1	57642	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	61926524	61926524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggctgggcgccaccctggGaagagagcaagttcaaggta	16	9	1	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	61926524	G	T	61926524	3	4	45	1	0	0	0	0	1	0	0	0	3708	1174	41	5	67	5	COL20A1	20	61926524	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		61926524	1098996	113	4440											
DSCAM	1826	bcgsc.ca	37	chr21	41719789	41719789	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagagttcctggtcctcagTtcctgtcacgctgcaggaca	12	12	2	1	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		C	41719789	T	C	41719789	3	2	45	1	0	0	0	0	1	0	0	0	4805	1725	60	2	5132	2	DSCAM	21	41719789	Missense_Mutation	SNP	T	TCGA-KN-8430-01A-11D-2310-10		41719789	6410106	114	4441											
KRTAP10-5	386680	broad.mit.edu	37	chr21	46000294	46000294	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggggctgggctcacaggcCgcctggcagcaggggctgga	19	12	1	0	rs201287112		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	46000294	C	T	46000294	2	4	45	1	0	0	0	0	0	0	0	1	8573	639	23	1		1	KRTAP10-5	21	46000294	Silent	SNP	C	TCGA-KN-8430-01A-11D-2310-10	4280505	46000294	2129601	115	4442											
CLTCL1	8218	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	19175230	19175230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcataggcatcgatagatGcccttaagccctaggaagac	10	10	1	2	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		A	19175230	G	A	19175230	3	1	45	1	0	0	0	0	1	0	0	0	3596	1319	46	4	493	4	CLTCL1	22	19175230	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10		19175230	32129336	116	4443											
KREMEN1	83999	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	29517360	29517360	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttagtgcctggaaaccttgGctgctacaaggatcatggaa	11	8	1	0	novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		T	29517360	G	T	29517360	3	4	45	1	0	0	0	0	1	0	0	0	8503	1203	42	5	382	5	KREMEN1	22	29517360	Missense_Mutation	SNP	G	TCGA-KN-8430-01A-11D-2310-10	10342130	29517360	21787206	117	4444											
USP9Y	8287	broad.mit.edu	37	chrY	14888667	14888667	+	Frame_Shift_Del	DEL	A	A	-													tgtgtgtttttgatggtgacAaaaacagcattaattgtgca					novel		TCGA-KN-8430-01A-11D-2310-10	TCGA-KN-8430-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70fd4434-02c9-4016-bb89-86bec4317489	0e26ad23-4697-4346-bb99-8cddd8d612c7		-	14888667	A	-	14888667	7	5	45	1	0	1	0	1	0	0	0	0	17197	131	5	0	2578	0	USP9Y	24	14888667	Frame_Shift_Del	DEL	A	TCGA-KN-8430-01A-11D-2310-10		14888667	44484899	118	4445											
CLCNKB	1188	broad.mit.edu	37	chr1	16383402	16383402	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctgacaaatccgccagcCccaaagtgagccggcccagc	9	17	0	2	rs6698427		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	16383402	C	T	16383402	2	4	46	1	0	0	0	0	0	0	0	1	3499	610	22	3		3	CLCNKB	1	16383402	Silent	SNP	C	TCGA-KN-8431-01A-11D-2310-10		16383402	232867219	1	4446											
USP48	84196	mdanderson.org	37	chr1	22109370	22109370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcggtaagcggtctcgatGtgctcctgcgacacctcctc	11	14	1	0	rs10917042	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	22109370	G	A	22109370	2	1	46	1	0	0	0	0	0	0	0	1	17185	1368	48	4		4	USP48	1	22109370	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10	5725968	22109370	227141251	2	4447											
C1orf213	148898	broad.mit.edu;hgsc.bcm.edu	37	chr1	23696027	23696028	+	RNA	INS	-	-	T													tagatctcgaattcgtagacINSttgcaggcgaagcccagata					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	23696028	-	T	23696027	6	5	46	0	1	1	1	0	0	0	0	0	2050	564	20	0		0	C1orf213	1	23696027	RNA	INS	-	TCGA-KN-8431-01A-11D-2310-10	1586657	23696027	225554594	3	4448	104	2									
C1orf213	148898	bcgsc.ca	37	chr1	23696028	23696029	+	RNA	INS	-	-	T													agatctcgaattcgtagactINStgcaggcgaagcccagatat					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	23696029	-	T	23696028	6	5	46	0	1	1	1	0	0	0	0	0	2050	1606	56	0		0	C1orf213	1	23696028	RNA	INS	-	TCGA-KN-8431-01A-11D-2310-10	1	23696028	225554593	4	4449	104	2									
OR2T33	391195	mdanderson.org	37	chr1	248436932	248436932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtccatgagggaaagttggCtcaggaggaagtacatgggc	16	6	1	1	rs200639224		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	248436932	C	T	248436932	3	4	46	1	0	0	0	0	1	0	0	0	11103	797	28	4	780	4	OR2T33	1	248436932	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	224740904	248436932	813689	5	4450											
HADHB	3032	broad.mit.edu;bcgsc.ca	37	chr2	26502036	26502036	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagttctccaccagtgagAccatgggccactctgcagac	10	14	2	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	26502036	A	G	26502036	3	3	46	1	0	0	0	0	1	0	0	0	7002	275	10	2	694	2	HADHB	2	26502036	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		26502036	216697337	6	4451											
NDUFS1	4719	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	207008833	207008833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggctcggtaagtctttgaCgttttagcccatcataggca	10	9	2	1	rs137994727	alternate_allele	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	207008833	C	G	207008833	3	3	46	1	0	0	0	0	1	0	0	0	10370	536	19	5	1327	5	NDUFS1	2	207008833	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	180506797	207008833	36190540	7	4452											
GPD1L	23171	broad.mit.edu	37	chr3	32169635	32169643	+	In_Frame_Del	DEL	AAGATGTGG	AAGATGTGG	-													agaaatttgcctccacagtcAagatgtgggtctttgaagaa					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	AAGATGTGG	AAGATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		-	32169643	AAGATGTGG	-	32169635	7	5	46	1	0	1	0	1	0	0	0	0	6662	131	5	0	121	0	GPD1L	3	32169635	In_Frame_Del	DEL	AAGATGTGG	TCGA-KN-8431-01A-11D-2310-10		32169635	165852795	8	4453	105	2									
GPD1L	23171	bcgsc.ca	37	chr3	32169636	32169644	+	In_Frame_Del	DEL	AAGATGTGG	AAGATGTGG	-													gaaatttgcctccacagtcaAgatgtgggtctttgaagaaa					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	AAGATGTGG	AAGATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		-	32169644	AAGATGTGG	-	32169636	7	5	46	1	0	1	0	1	0	0	0	0	6662	72	3	0	122	0	GPD1L	3	32169636	In_Frame_Del	DEL	AAGATGTGG	TCGA-KN-8431-01A-11D-2310-10	1	32169636	165852794	9	4454	105	2									
MUC4	4585	mdanderson.org	37	chr3	195508931	195508931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaaaGgctggtgacaggaagagggg	18	5	0	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	195508931	G	A	195508931	3	1	46	1	0	0	0	0	1	0	0	0	10056	1000	35	4		4	MUC4	3	195508931	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	163339295	195508931	2513499	10	4455											
CCNA2	890	broad.mit.edu	37	chr4	122743634	122743634	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactaatggctgaattaaaAgccagggcatcttcacgctc	8	10	2	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	122743634	A	G	122743634	2	3	46	1	0	0	0	0	0	0	0	1	2939	59	3	2		2	CCNA2	4	122743634	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10		122743634	68410642	11	4456											
NPY2R	4887	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	156136035	156136035	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgttccacatcatcgccaTgtgctccacttttgccaatc	6	14	1	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	156136035	T	A	156136035	3	1	46	1	0	0	0	0	1	0	0	0	10688	1464	51	5	946	5	NPY2R	4	156136035	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	33392401	156136035	35018241	12	4457											
KIF2A	3796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	61653554	61653554	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgtgtgtgtgtaagaaaaCgaccactcaataaaaaaggt	9	5	1	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	61653554	C	T	61653554	4	4	46	1	0	0	0	0	0	1	0	0	8358	528	19	1	721	1	KIF2A	5	61653554	Nonsense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10		61653554	119261706	13	4458											
MEF2C	4208	hgsc.bcm.edu	37	chr5	88025096	88025096	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attccttgtcctggtaaagtAggagttgctacggaaaccac	10	9	0	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	88025096	A	G	88025096	2	3	46	1	0	0	0	0	0	0	0	1	9534	407	15	2		2	MEF2C	5	88025096	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10	26371542	88025096	92890164	14	4459											
DMXL1	1657	broad.mit.edu	37	chr5	118525451	118525451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaacaaacgttttaggcCgtcaaaaatgtcttgcagag	9	8	2	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	118525451	C	T	118525451	3	4	46	1	0	0	0	0	1	0	0	0	4631	652	23	1	7298	1	DMXL1	5	118525451	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	30500355	118525451	62389809	15	4460											
GCNT2	2651	ucsc.edu	37	chr6	10626704	10626704	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagacttaaagtggctggTtaattcaccaagcctgtttg	11	8	1	1	rs200336999		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	10626704	T	G	10626704	3	3	46	1	0	0	0	0	1	0	0	0	6355	1725	60	5	2935	5	GCNT2	6	10626704	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10		10626704	160488363	16	4461											
HLA-A	3105	bcgsc.ca	37	chr6	29911261	29911261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagcctacctggatggcaCgtgcgtggagtggctccgca	16	11	0	1	rs3129018	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	29911261	C	G	29911261	3	3	46	1	0	0	0	0	1	0	0	0	7253	536	19	5	570	5	HLA-A	6	29911261	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	19284557	29911261	141203806	17	4462											
KCNK5	8645	hgsc.bcm.edu	37	chr6	39159435	39159435	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacaaacatgctcaccttcCagttgacaaaaagggacagc	7	13	1	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	39159435	C	T	39159435	4	4	46	1	0	0	0	0	0	1	0	0	8130	595	21	4	772	4	KCNK5	6	39159435	Nonsense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	9248174	39159435	131955632	18	4463											
TREML2	79865	mdanderson.org	37	chr6	41166022	41166022	+	Silent	SNP	A	A	G													cctttcacccagactcgggcAaagccaggctcacacttctt					rs139267947	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	41166022	A	G	41166022	2	3	46	1	0	0	0	0	0	0	0	1	16578	127	5	4		4	TREML2	6	41166022	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10	2006587	41166022	129949045	19	4464	106	2									
TREML2	79865	mdanderson.org	37	chr6	41166025	41166025	+	Silent	SNP	G	G	A													ttcacccagactcgggcaaaGccaggctcacacttcttctt					rs113267424	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	41166025	G	A	41166025	2	1	46	1	0	0	0	0	0	0	0	1	16578	958	34	4		4	TREML2	6	41166025	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10	3	41166025	129949042	20	4465	106	2									
DST	667	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	56480802	56480802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtaagaggatcaattatgCcccctgtactgacttgggct	10	10	1	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	56480802	C	T	56480802	3	4	46	1	0	0	0	0	1	0	0	0	4820	739	26	3	12936	3	DST	6	56480802	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	15314777	56480802	114634265	21	4466											
RINT1	60561	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	105182935	105182935	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcaaagcaatttcttaaTcagtttctggagcaggaaac	8	7	4	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	105182935	T	C	105182935	2	2	46	1	0	0	0	0	0	0	0	1	13471	1432	50	4		4	RINT1	7	105182935	Silent	SNP	T	TCGA-KN-8431-01A-11D-2310-10		105182935	53955728	22	4467											
SMARCA2	6595	broad.mit.edu	37	chr9	2039815	2039815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcaacagcagccgcagcagca	12	15	0	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	2039815	G	A	2039815	2	1	46	1	0	0	0	0	0	0	0	1	14867	962	34	4		4	SMARCA2	9	2039815	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10		2039815	139173616	23	4468											
C8G	733	broad.mit.edu	37	chr9	139839860	139839860	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaggccacgccggcccGcatcccccatcagcaccatc	8	21	2	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	139839860	G	T	139839860	3	4	46	1	0	0	0	0	1	0	0	0	2441	1087	38	5	90	5	C8G	9	139839860	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	137800045	139839860	1373571	24	4469											
FBXO18	84893	bcgsc.ca	37	chr10	5960320	5960320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagctatcatgaacatagTtctgtctcagccatgtggga	9	9	3	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	5960320	T	C	5960320	3	2	46	1	0	0	0	0	1	0	0	0	5780	1725	60	2	2191	2	FBXO18	10	5960320	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10		5960320	129574427	25	4470											
IDE	3416	ucsc.edu	37	chr10	94291641	94291641	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgtctttgcaactttcAtcgaacaaggggcacagaaa	8	10	3	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	94291641	A	G	94291641	2	3	46	1	0	0	0	0	0	0	0	1	7554	214	8	4		4	IDE	10	94291641	Silent	SNP	A	TCGA-KN-8431-01A-11D-2310-10	88331321	94291641	41243106	26	4471											
MUC6	4588	mdanderson.org	37	chr11	1017654	1017654	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtactggtggggttgGgggtgatgttggtggtagaa	19	3	0	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	1017654	G	A	1017654	3	1	46	1	0	0	0	0	1	0	0	0	10058	1232	43	3	2184	3	MUC6	11	1017654	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		1017654	133988862	27	4472			1	43		2	2	16	G		2.568066e-05
MUC6	4588	mdanderson.org	37	chr11	1017669	1017669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttgggggtgatgttggtgGtagaagttgaggtggcttca	20	2	1	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	1017669	G	A	1017669	3	1	46	1	0	0	0	0	1	0	0	0	10058	1261	44	3	2199	3	MUC6	11	1017669	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	15	1017669	133988847	28	4473			1	43		2	2	16	G		2.568066e-05
OR5M9	390162	broad.mit.edu	37	chr11	56230641	56230641	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgataataagttttccagCattttgggggtaacgttgga	11	5	1	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	56230641	C	A	56230641	3	1	46	1	0	0	0	0	1	0	0	0	11256	710	25	5	697	5	OR5M9	11	56230641	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	55212972	56230641	78775875	29	4474											
NUMA1	4926	broad.mit.edu	37	chr11	71715034	71715034	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgggttccactgcgagtgtTgggggaagccttggacaggg	19	8	0	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	71715034	T	G	71715034	3	3	46	1	0	0	0	0	1	0	0	0	10829	1812	63	5	120	5	NUMA1	11	71715034	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	15484393	71715034	63291482	30	4475											
MED17	9440	mdanderson.org	37	chr11	93517886	93517886	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accgagggcgacgcgcaggaGtggccgggcgccgggtccag	20	13	0	0	rs2848477	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	93517886	G	C	93517886	3	2	46	1	0	0	0	0	1	0	0	0	9512	1020	36	5	209	5	MED17	11	93517886	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	21802852	93517886	41488630	31	4476											
CNTN5	53942	mdanderson.org	37	chr11	99690461	99690461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaattattattcccccatcaAtctttatcattcctcagatg	3	11	4	1	rs10893933		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	99690461	A	G	99690461	3	3	46	1	0	0	0	0	1	0	0	0	3673	101	4	4	248	4	CNTN5	11	99690461	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	6172575	99690461	35316055	32	4477											
KDM2B	84678	ucsc.edu	37	chr12	121891003	121891003	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtccttgcagaagtggcActctccgcactcggtccgca	10	15	1	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	121891003	A	G	121891003	3	3	46	1	0	0	0	0	1	0	0	0	8186	159	6	2	2227	2	KDM2B	12	121891003	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		121891003	11960892	33	4478											
MYH7	4625	broad.mit.edu;mdanderson.org	37	chr14	23892897	23892897	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcagcttggcaatgatctcAtccagcccagccatctcctc	7	16	3	1	rs140244068	alternate_allele	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	23892897	A	T	23892897	3	4	46	1	0	0	0	0	1	0	0	0	10117	214	8	5	2917	5	MYH7	14	23892897	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		23892897	83456643	34	4479											
SOS2	6655	mdanderson.org;bcgsc.ca	37	chr14	50626363	50626363	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctaacattcgatctagagtActacgataatgaagagaaat	7	6	2	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	50626363	A	T	50626363	3	4	46	1	0	0	0	0	1	0	0	0	15035	388	14	5	2416	5	SOS2	14	50626363	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	26733466	50626363	56723177	35	4480											
SOS2	6655	broad.mit.edu;mdanderson.org	37	chr14	50626456	50626456	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgttctcatctttggaTactaattcaaatgcatgctt	6	8	3	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	50626456	T	A	50626456	2	1	46	1	0	0	0	0	0	0	0	1	15035	1393	49	5		5	SOS2	14	50626456	Silent	SNP	T	TCGA-KN-8431-01A-11D-2310-10	93	50626456	56723084	36	4481											
CHAC1	79094	broad.mit.edu	37	chr15	41247647	41247647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtacctgaatgtgcgagAggcagtgcttggtggctacg	16	7	0	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	41247647	A	G	41247647	3	3	46	1	0	0	0	0	1	0	0	0	3337	304	11	2	480	2	CHAC1	15	41247647	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10		41247647	61283745	37	4482											
CDH11	1009	hgsc.bcm.edu	37	chr16	65006841	65006841	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagacagtgatgttgagccaGgctgtttcctctctatccag	10	10	1	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	65006841	G	T	65006841	2	4	46	1	0	0	0	0	0	0	0	1	3126	987	35	5		5	CDH11	16	65006841	Silent	SNP	G	TCGA-KN-8431-01A-11D-2310-10		65006841	25347912	38	4483											
ZFHX3	463	mdanderson.org	37	chr16	72991715	72991715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccgccgccgccgcagccAccgccgccgccgccgccccg	12	26	0	0	rs4788682	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	72991715	A	G	72991715	3	3	46	1	0	0	0	0	1	0	0	0	17739	159	6	2	8817	2	ZFHX3	16	72991715	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	7984874	72991715	17363038	39	4484											
ACSF3	197322	broad.mit.edu;bcgsc.ca	37	chr16	89167160	89167160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgccggctggcgcctgCgagacacagaggaagtggtc	16	12	0	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	89167160	C	T	89167160	3	4	46	1	0	0	0	0	1	0	0	0	176	768	27	1	73	1	ACSF3	16	89167160	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	16175445	89167160	1187593	40	4485											
TP53	7157	broad.mit.edu	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	7578212	G	A	7578212	4	1	46	1	0	0	0	0	0	1	0	0	16486	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		7578212	73616998	41	4486											
RAI1	10743	ucsc.edu	37	chr17	17712752	17712752	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgaaatgtcccaaacataAggtaggggaccacagtgttt	10	7	0	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	17712752	A	G	17712752	3	3	46	1	0	0	0	0	1	0	0	0	13099	86	3	2	5718	2	RAI1	17	17712752	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	10134540	17712752	63482458	42	4487											
HNF1B	6928	broad.mit.edu;hgsc.bcm.edu	37	chr17	36099508	36099510	+	In_Frame_Del	DEL	TTG	TTG	-													gggtcttcataggggtgcccTtgttgagatgctgggagagg					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		-	36099510	TTG	-	36099508	7	5	46	1	0	1	0	1	0	0	0	0	7310	1609	56	0	1238	0	HNF1B	17	36099508	In_Frame_Del	DEL	TTG	TCGA-KN-8431-01A-11D-2310-10	18386756	36099508	45095702	43	4488	107	2									
HNF1B	6928	bcgsc.ca	37	chr17	36099509	36099511	+	In_Frame_Del	DEL	TTG	TTG	-													ggtcttcataggggtgccctTgttgagatgctgggagaggt					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		-	36099511	TTG	-	36099509	7	5	46	1	0	1	0	1	0	0	0	0	7310	1821	63	0	1239	0	HNF1B	17	36099509	In_Frame_Del	DEL	TTG	TCGA-KN-8431-01A-11D-2310-10	1	36099509	45095701	44	4489	107	2									
UBTF	7343	broad.mit.edu	37	chr17	42289365	42289365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttctggatatagtctcTcatgatctcctgcagagcca	9	11	4	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	42289365	T	C	42289365	3	2	46	1	0	0	0	0	1	0	0	0	17015	1559	54	2	1565	2	UBTF	17	42289365	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	6189856	42289365	38905845	45	4490											
ZACN	353174	ucsc.edu	37	chr17	74075997	74075997	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacactcgcctggcctggaAcactagtgcacacccgcggc	12	16	0	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		G	74075997	A	G	74075997	3	3	46	1	0	0	0	0	1	0	0	0	17616	43	2	2	310	2	ZACN	17	74075997	Missense_Mutation	SNP	A	TCGA-KN-8431-01A-11D-2310-10	31786632	74075997	7119213	46	4491											
AZI1	22994	broad.mit.edu	37	chr17	79164828	79164828	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accgctcctgaagcttccgcTccgactgctccagctcggag	10	17	0	1	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	79164828	T	C	79164828	3	2	46	1	0	0	0	0	1	0	0	0	1244	1551	54	2	436	2	AZI1	17	79164828	Missense_Mutation	SNP	T	TCGA-KN-8431-01A-11D-2310-10	5088831	79164828	2030382	47	4492											
INSL3	3640	mdanderson.org	37	chr19	17932289	17932289	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagggcccagcagcaccagCgcccaggcgggcagacgggg	18	15	0	1	rs2286663	byfrequency	TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	17932289	C	T	17932289	2	4	46	1	0	0	0	0	0	0	0	1	7828	755	27	1		1	INSL3	19	17932289	Silent	SNP	C	TCGA-KN-8431-01A-11D-2310-10		17932289	41196694	48	4493											
DLL3	10683	broad.mit.edu	37	chr19	39994863	39994863	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgtcctctgctaccaccGgatgccttgtccctgggcct	10	18	1	0	rs139297205		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	39994863	G	A	39994863	3	1	46	1	0	0	0	0	1	0	0	0	4604	1117	39	1	823	1	DLL3	19	39994863	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10	22062574	39994863	19134120	49	4494											
DYRK1B	9149	broad.mit.edu	37	chr19	40321175	40321176	+	Frame_Shift_Ins	INS	-	-	C													ctggggtggcgcctgctgggINScccgccgcttcttcttcgca					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	40321176	-	C	40321175	7	5	46	1	0	1	1	0	0	0	0	0	4892	1203	42	0	1709	0	DYRK1B	19	40321175	Frame_Shift_Ins	INS	-	TCGA-KN-8431-01A-11D-2310-10	326312	40321175	18807808	50	4495											
ZNF180	7733	broad.mit.edu	37	chr19	44980907	44980907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttttctccagtatgagtTctctgatgtacaacaagaac	8	9	2	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		C	44980907	T	C	44980907	2	2	46	1	0	0	0	0	0	0	0	1	17853	1780	62	4		4	ZNF180	19	44980907	Silent	SNP	T	TCGA-KN-8431-01A-11D-2310-10	4659732	44980907	14148076	51	4496											
SRC	6714	broad.mit.edu;bcgsc.ca	37	chr20	36022638	36022638	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactgctcaatgcagagaacCcgagagggaccttcctcgtg	11	12	1	2	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	36022638	C	T	36022638	3	4	46	1	0	0	0	0	1	0	0	0	15234	623	22	3	525	3	SRC	20	36022638	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10		36022638	27002882	52	4497											
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr21	41684190	41684190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catccttctgccaggtgatcGtgatgggtaagtcccctgag	12	11	1	3	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	41684190	G	A	41684190	3	1	46	1	0	0	0	0	1	0	0	0	4805	1145	40	1	4258	1	DSCAM	21	41684190	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		41684190	6445705	53	4498											
HMGXB4	10042	broad.mit.edu	37	chr22	35661575	35661576	+	Frame_Shift_Del	DEL	AG	AG	-													aaaaaagaagagaaggacaaAgagagagagagaggagaaaa					novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		-	35661576	AG	-	35661575	7	5	46	1	0	1	0	1	0	0	0	0	7297	69	3	0	1208	0	HMGXB4	22	35661575	Frame_Shift_Del	DEL	AG	TCGA-KN-8431-01A-11D-2310-10		35661575	15642991	54	4499											
FAM47C	442444	mdanderson.org	37	chrX	37028209	37028209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtctccgcccggagcctcccGatactggagtgtcccatctc	10	17	2	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		A	37028209	G	A	37028209	3	1	46	1	0	0	0	0	1	0	0	0	5620	1058	37	1	1728	1	FAM47C	23	37028209	Missense_Mutation	SNP	G	TCGA-KN-8431-01A-11D-2310-10		37028209	118242351	55	4500											
WAS	7454	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	48545247	48545247	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcacgagttcacgatacCgtgggctcccagcacctgga	10	14	2	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	48545247	C	T	48545247	3	4	46	1	0	0	0	0	1	0	0	0	17357	652	23	1	663	1	WAS	23	48545247	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	11517038	48545247	106725313	56	4501											
ZDHHC9	51114	bcgsc.ca	37	chrX	128945410	128945410	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caaggggccacacagcacttCacagcagttcttcacaatat	7	13	3	0	novel		TCGA-KN-8431-01A-11D-2310-10	TCGA-KN-8431-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93b51c61-6eea-4228-a102-840a2e118522	3e1c3b30-dc01-472e-b1c3-b81a850659d3		T	128945410	C	T	128945410	3	4	46	1	0	0	0	0	1	0	0	0	17727	835	29	4	253	4	ZDHHC9	23	128945410	Missense_Mutation	SNP	C	TCGA-KN-8431-01A-11D-2310-10	80400163	128945410	26325150	57	4502											
TMEM51	55092	broad.mit.edu	37	chr1	15545898	15545898	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acgaggaagtgatgaacacaAactactcagaagcaagggga	12	7	1	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	15545898	A	T	15545898	3	4	47	1	0	0	0	0	1	0	0	0	16281	14	1	5	427	5	TMEM51	1	15545898	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		15545898	233704723	1	4503											
IGSF21	84966	broad.mit.edu;mdanderson.org	37	chr1	18692186	18692186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccatgcaggcagaggtcaCgctgggtaagacttggtggg	17	9	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	18692186	C	T	18692186	3	4	47	1	0	0	0	0	1	0	0	0	7660	536	19	1	1032	1	IGSF21	1	18692186	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	3146288	18692186	230558435	2	4504											
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	62380292	62380292	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacataacaaggccaacaaaAtcaccggtaaccagaaccag	6	12	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	62380292	A	G	62380292	3	3	47	1	0	0	0	0	1	0	0	0	7792	101	4	4	3624	4	INADL	1	62380292	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	43688106	62380292	186870329	3	4505											
LEPR	3953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	66102278	66102278	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaaggattctttctctaaTagctcatgggagatagaggc	11	6	3	3	rs34130975	bycluster;byfrequency;alternate_allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	66102278	T	G	66102278	3	3	47	1	0	0	0	0	1	0	0	0	8790	1403	49	5	3378	5	LEPR	1	66102278	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	3721986	66102278	183148343	4	4506											
HIPK1	204851	hgsc.bcm.edu;bcgsc.ca	37	chr1	114483037	114483037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcaagtgttttcgccccCatcagtgtcgtcgagtgcct	11	13	1	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	114483037	C	T	114483037	3	4	47	1	0	0	0	0	1	0	0	0	7174	594	21	4	34	4	HIPK1	1	114483037	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	48380759	114483037	134767584	5	4507											
ANP32E	81611	mdanderson.org	37	chr1	150199057	150199057	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcttcctcttcctcCtcctcttcctcatatccttc	0	21	4	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	150199057	C	T	150199057	2	4	47	1	0	0	0	0	0	0	0	1	709	680	24	4		4	ANP32E	1	150199057	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	35716020	150199057	99051564	6	4508											
FLAD1	80308	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	154965424	154965424	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ataccgtgcggaacccggccCtgaagtgcctgagcccagga	13	14	0	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	154965424	C	G	154965424	3	3	47	1	0	0	0	0	1	0	0	0	5969	680	24	5	1845	5	FLAD1	1	154965424	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	4766367	154965424	94285197	7	4509											
ARHGEF2	9181	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	155932493	155932493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcttacacatctgctccGcactaggacctgagaactag	9	12	2	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	155932493	G	A	155932493	3	1	47	1	0	0	0	0	1	0	0	0	905	1087	38	1	2024	1	ARHGEF2	1	155932493	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	967069	155932493	93318128	8	4510											
MR1	3140	mdanderson.org;bcgsc.ca	37	chr1	181021437	181021437	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacagctctcttctgcaaagCtcatggcttttaccccccag	6	15	3	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	181021437	C	A	181021437	3	1	47	1	0	0	0	0	1	0	0	0	9830	797	28	5	685	5	MR1	1	181021437	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	25088944	181021437	68229184	9	4511											
RGL1	23179	broad.mit.edu	37	chr1	183885724	183885724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcgctctgtctcggtgacGtccattacctcgactgtgct	10	13	2	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	183885724	G	A	183885724	2	1	47	1	0	0	0	0	0	0	0	1	13368	1132	40	1		1	RGL1	1	183885724	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	2864287	183885724	65364897	10	4512											
KIF21B	23046	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	200943959	200943959	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagaccttgatgacacccGcacggcaggcgctgagcagc	12	15	0	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	200943959	G	A	200943959	3	1	47	1	0	0	0	0	1	0	0	0	8350	1087	38	1	224	1	KIF21B	1	200943959	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	17058235	200943959	48306662	11	4513											
SUSD4	55061	hgsc.bcm.edu;ucsc.edu	37	chr1	223465989	223465989	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacacacttgaaggtcatcGaaccctacatcaacaaagag	7	12	2	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	223465989	G	A	223465989	2	1	47	1	0	0	0	0	0	0	0	1	15510	1049	37	1		1	SUSD4	1	223465989	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	22522030	223465989	25784632	12	4514											
CAPN2	824	broad.mit.edu	37	chr1	223936794	223936794	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcagaagctggtgaagggGcacgcgtactcggtcaccgg	15	10	2	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	223936794	G	C	223936794	2	2	47	1	0	0	0	0	0	0	0	1	2652	1190	42	5		5	CAPN2	1	223936794	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	470805	223936794	25313827	13	4515											
OBSCN	84033	broad.mit.edu	37	chr1	228432096	228432096	+	Frame_Shift_Del	DEL	A	A	-													ctgtgaggtggcccaggcccAgacggaggtgacgtggtaca					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	228432096	A	-	228432096	7	5	47	1	0	1	0	1	0	0	0	0	10891	188	7	0	3343	0	OBSCN	1	228432096	Frame_Shift_Del	DEL	A	TCGA-KN-8432-01A-11D-2310-10	4495302	228432096	20818525	14	4516											
HNRNPU	3192	broad.mit.edu	37	chr1	245025801	245025803	+	In_Frame_Del	DEL	TCT	TCT	-													ctgtgtcatcgaagtgttcaTcttcttcttcaacaggtggc					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	245025803	TCT	-	245025801	7	5	47	1	0	1	0	1	0	0	0	0	7331	1435	50	0	1686	0	HNRNPU	1	245025801	In_Frame_Del	DEL	TCT	TCGA-KN-8432-01A-11D-2310-10	16593705	245025801	4224820	15	4517											
CNST	163882	broad.mit.edu	37	chr1	246811292	246811292	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatctgccttctgatgagAgctgtctttctcttgatgat	9	8	4	5	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	246811292	A	G	246811292	3	3	47	1	0	0	0	0	1	0	0	0	3663	304	11	2	1819	2	CNST	1	246811292	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	1785491	246811292	2439329	16	4518											
CAPN13	92291	ucsc.edu;bcgsc.ca	37	chr2	30953639	30953639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgcttcagttgtacatgAccaggctcatccactgaaaa	7	11	2	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	30953639	A	G	30953639	3	3	47	1	0	0	0	0	1	0	0	0	2651	275	10	2	16	2	CAPN13	2	30953639	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		30953639	212245734	17	4519											
XDH	7498	broad.mit.edu	37	chr2	31590910	31590910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtccataaaaggagttgTtctttatagcatcctgagga	10	7	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	31590910	T	C	31590910	3	2	47	1	0	0	0	0	1	0	0	0	17532	1725	60	2	1955	2	XDH	2	31590910	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	637271	31590910	211608463	18	4520											
HNRPLL	92906	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	38818735	38818735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaccacagattcacagagtCctcgaacatggacgacgggt	10	13	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	38818735	C	A	38818735	3	1	47	1	0	0	0	0	1	0	0	0	7335	855	30	5	1431	5	HNRPLL	2	38818735	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	7227825	38818735	204380638	19	4521											
TUBA3D	113457	mdanderson.org	37	chr2	132236921	132236921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaggcagctcttccacccGgagcagctgatcaccgggaa	11	14	2	1	rs4065352	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	132236921	G	A	132236921	2	1	47	1	0	0	0	0	0	0	0	1	16853	1103	39	1		1	TUBA3D	2	132236921	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	93418186	132236921	110962452	20	4522											
MCM6	4175	broad.mit.edu	37	chr2	136614368	136614368	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggagctgacaaatttataTtctgtttcaatgattttgat	8	4	2	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	136614368	T	C	136614368	3	2	47	1	0	0	0	0	1	0	0	0	9468	1493	52	4	937	4	MCM6	2	136614368	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	4377447	136614368	106585005	21	4523											
LRP2	4036	broad.mit.edu	37	chr2	169999257	169999257	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagctgtatcctccaggTctcagaaggcagaggtggct	13	11	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	169999257	T	C	169999257	2	2	47	1	0	0	0	0	0	0	0	1	9028	1664	58	2		2	LRP2	2	169999257	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10	33384889	169999257	73200116	22	4524											
ZNF142	7701	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	219513452	219513452	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atcttttcatgagcatgcatCttgcctacatgatcctggta	7	10	3	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	219513452	C	G	219513452	3	3	47	1	0	0	0	0	1	0	0	0	17836	912	32	5	3904	5	ZNF142	2	219513452	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	49514195	219513452	23685921	23	4525											
OBSL1	23363	broad.mit.edu	37	chr2	220432822	220432822	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgcacccggccccgcatctCgcacaggtagataccatcat	9	17	2	1	rs2292359		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	220432822	C	T	220432822	3	4	47	1	0	0	0	0	1	0	0	0	10892	893	31	1	4685	1	OBSL1	2	220432822	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	919370	220432822	22766551	24	4526											
ITM2C	81618	bcgsc.ca	37	chr2	231741668	231741668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcaacttctgggagctcCtcatgaacgtgaaggtgcgc	12	12	2	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	231741668	C	T	231741668	3	4	47	1	0	0	0	0	1	0	0	0	7975	681	24	4	561	4	ITM2C	2	231741668	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	11308846	231741668	11457705	25	4527											
ALPPL2	251	hgsc.bcm.edu;mdanderson.org	37	chr2	233274094	233274094	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctacacggtcctcctataCggaaacggtccaggctatgt	10	13	0	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	233274094	C	T	233274094	2	4	47	1	0	0	0	0	0	0	0	1	549	547	19	1		1	ALPPL2	2	233274094	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	1532426	233274094	9925279	26	4528											
UGT1A1	54658	bcgsc.ca	37	chr2	234669525	234669542	+	In_Frame_Del	DEL	CTCCTCTCATTCAGATCA	CTCCTCTCATTCAGATCA	-													cctacgtgcccaggcctctcTcctctcattcagatcacatg					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CTCCTCTCATTCAGATCA	CTCCTCTCATTCAGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	234669542	CTCCTCTCATTCAGATCA	-	234669525	7	5	47	1	0	1	0	1	0	0	0	0	17050	1551	54	0	594	0	UGT1A1	2	234669525	In_Frame_Del	DEL	CTCCTCTCATTCAGATCA	TCGA-KN-8432-01A-11D-2310-10	1395431	234669525	8529848	27	4529											
VHL	7428	ucsc.edu;bcgsc.ca	37	chr3	10183608	10183608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcgaagagtacggccctgAagaagacggcggggaggagt	18	8	0	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	10183608	A	G	10183608	3	3	47	1	0	0	0	0	1	0	0	0	17268	246	9	4	79	4	VHL	3	10183608	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		10183608	187838822	28	4530											
ABHD14A	25864	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	52014444	52014444	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caccttcaaaggaggcaagcAcagaggcagggcgggcagcg	16	11	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	52014444	A	C	52014444	3	2	47	1	0	0	0	0	1	0	0	0	79	159	6	5	447	5	ABHD14A	3	52014444	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	41830836	52014444	146007986	29	4531											
SNTN	132203	broad.mit.edu;bcgsc.ca	37	chr3	63649637	63649637	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaccaagccaaaatacAgagagatcctttctgaactt	6	9	1	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	63649637	A	T	63649637	4	4	47	1	0	0	0	0	0	1	0	0	14974	180	7	5	324	5	SNTN	3	63649637	Nonsense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	11635193	63649637	134372793	30	4532											
OR5H14	403273	mdanderson.org	37	chr3	97868588	97868588	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcttggcaacaatggcatAtgatcgctatgtagccatat	8	9	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	97868588	A	G	97868588	3	3	47	1	0	0	0	0	1	0	0	0	11239	449	16	4	361	4	OR5H14	3	97868588	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	34218951	97868588	100153842	31	4533											
MCM2	4171	broad.mit.edu	37	chr3	127323460	127323460	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctccctcagggactaccgCgccatcccagagctggacgc	11	17	1	1	rs186022338	by1000genomes	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	127323460	C	T	127323460	2	4	47	1	0	0	0	0	0	0	0	1	9463	755	27	1		1	MCM2	3	127323460	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	29454872	127323460	70698970	32	4534											
IGSF10	285313	broad.mit.edu	37	chr3	151163769	151163769	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctagatctctctgtttgggTttcataagtgatgacagatg	10	6	4	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	151163769	T	C	151163769	3	2	47	1	0	0	0	0	1	0	0	0	7658	1725	60	2	3931	2	IGSF10	3	151163769	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	23840309	151163769	46858661	33	4535											
MUC4	4585	mdanderson.org	37	chr3	195506091	195506091	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcctgacctgtggatgcAgaggaagtgtcggtgacagg	18	7	0	3	rs74941663		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	195506091	A	C	195506091	2	2	47	1	0	0	0	0	0	0	0	1	10056	175	7	5		5	MUC4	3	195506091	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10	44342322	195506091	2516339	34	4536											
MUC4	4585	mdanderson.org	37	chr3	195507221	195507221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgctggtgacaggaagagGggtgacgtgacctgtggatg	19	5	0	4	rs200315207		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	195507221	G	A	195507221	3	1	47	1	0	0	0	0	1	0	0	0	10056	1232	43	3		3	MUC4	3	195507221	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	1130	195507221	2515209	35	4537											
MUC4	4585	mdanderson.org	37	chr3	195510162	195510162	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggggtggcgtgaccTgtggatgctgaggaagtgtc	20	5	0	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	195510162	T	G	195510162	2	3	47	1	0	0	0	0	0	0	0	1	10056	1567	55	5		5	MUC4	3	195510162	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10	2941	195510162	2512268	36	4538											
FRYL	285527	broad.mit.edu;mdanderson.org	37	chr4	48513002	48513002	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaaactttctttgaattgtCtatggagaaaagcagaagaa	8	6	2	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	48513002	C	G	48513002	5	3	47	1	0	0	0	0	0	0	1	0	6116	927	32	5	924	5	FRYL	4	48513002	Splice_Site	SNP	C	TCGA-KN-8432-01A-11D-2310-10		48513002	142641274	37	4539											
LRRC66	339977	broad.mit.edu;mdanderson.org	37	chr4	52861445	52861445	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggaagctgttatttctccGgagagggaagggtctaattc	14	6	2	1	rs187026269		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	52861445	G	A	52861445	2	1	47	1	0	0	0	0	0	0	0	1	9090	1103	39	1		1	LRRC66	4	52861445	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	4348443	52861445	138292831	38	4540											
MUC7	4589	broad.mit.edu	37	chr4	71347311	71347311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagagaccacagctgccCcacccacaccttctgcaact	5	20	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	71347311	C	T	71347311	3	4	47	1	0	0	0	0	1	0	0	0	10059	623	22	3	856	3	MUC7	4	71347311	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	18485866	71347311	119806965	39	4541											
MTTP	4547	broad.mit.edu	37	chr4	100503089	100503091	+	In_Frame_Del	DEL	ATG	ATG	-													aactggtctctcattaaataAtgaccggctgtacaagctca					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	100503091	ATG	-	100503089	7	5	47	1	0	1	0	1	0	0	0	0	10042	101	4	0	95	0	MTTP	4	100503089	In_Frame_Del	DEL	ATG	TCGA-KN-8432-01A-11D-2310-10	29155778	100503089	90651187	40	4542											
NPY1R	4886	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	164247528	164247528	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaagatgattatgatcaagGccaggtttccagagacacca	9	9	2	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	164247528	G	C	164247528	3	2	47	1	0	0	0	0	1	0	0	0	10687	1203	42	5	983	5	NPY1R	4	164247528	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	63744439	164247528	26906748	41	4543											
TKTL2	84076	broad.mit.edu	37	chr4	164393866	164393866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catcgtgtcaccactcagaaCaataactctttcatttgcac	4	13	4	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	164393866	C	A	164393866	3	1	47	1	0	0	0	0	1	0	0	0	16040	478	17	5	863	5	TKTL2	4	164393866	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	146338	164393866	26760410	42	4544											
SDHA	6389	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	235341	235341	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggccacgcgcctgcctggcAtttcagagacagccatgatc	11	14	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	235341	A	T	235341	3	4	47	1	0	0	0	0	1	0	0	0	14060	217	8	5	1181	5	SDHA	5	235341	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		235341	180679919	43	4545											
ANKHD1-EIF4EBP3	404734	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	139928655	139928655	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaggagacagaggaagagAtacccggtaaggaaagcagg	16	6	0	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	139928655	A	G	139928655	3	3	47	1	0	0	0	0	1	0	0	0	629	333	12	4	7982	4	ANKHD1-EIF4EBP3	5	139928655	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	139693314	139928655	40986605	44	4546											
ZNF354A	6940	mdanderson.org	37	chr5	178139379	178139380	+	Missense_Mutation	DNP	CC	CC	GT													gagttacacctgaatgttttCccacactcgttacatttata					rs199632980		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		GT	178139380	CC	GT	178139379	3	3	47	1	0	0	0	0	1	0	0	0	17969	842	30	5	321	5	ZNF354A	5	178139379	Missense_Mutation	DNP	CC	TCGA-KN-8432-01A-11D-2310-10	38210724	178139379	2775881	45	4547	108	2									
ZNF354A	6940	mdanderson.org	37	chr5	178139385	178139385	+	Silent	SNP	C	C	T													cacctgaatgttttcccacaCtcgttacatttatagggtct					rs199620032	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	178139385	C	T	178139385	2	4	47	1	0	0	0	0	0	0	0	1	17969	564	20	4		4	ZNF354A	5	178139385	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	6	178139385	2775875	46	4548	108	2									
HLA-DQA2	3118	mdanderson.org	37	chr6	32714168	32714168	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagacaccaagggctcttAtgaatcccatcctgaaaagg	8	12	1	3	rs9276437	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	32714168	A	G	32714168	2	3	47	1	0	0	0	0	0	0	0	1	7263	446	16	4		4	HLA-DQA2	6	32714168	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10		32714168	138400899	47	4549											
MTCH1	23787	broad.mit.edu;hgsc.bcm.edu	37	chr6	36938223	36938223	+	Frame_Shift_Del	DEL	G	G	-													aggtcgccaactagcaggaaGgggtaggtcagcatgctcac					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	36938223	G	-	36938223	7	5	47	1	0	1	0	1	0	0	0	0	9991	987	35	0	200	0	MTCH1	6	36938223	Frame_Shift_Del	DEL	G	TCGA-KN-8432-01A-11D-2310-10	4224055	36938223	134176844	48	4550	109	2									
MTCH1	23787	bcgsc.ca	37	chr6	36938224	36938224	+	Frame_Shift_Del	DEL	G	G	-													ggtcgccaactagcaggaagGggtaggtcagcatgctcact					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	36938224	G	-	36938224	7	5	47	1	0	1	0	1	0	0	0	0	9991	1232	43	0	201	0	MTCH1	6	36938224	Frame_Shift_Del	DEL	G	TCGA-KN-8432-01A-11D-2310-10	1	36938224	134176843	49	4551	109	2									
RNF8	9025	bcgsc.ca	37	chr6	37336717	37336717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcacagaggttcatcatgAgcagaaagcctcaaactctt	8	10	5	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	37336717	A	G	37336717	3	3	47	1	0	0	0	0	1	0	0	0	13595	304	11	2	708	2	RNF8	6	37336717	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	398493	37336717	133778350	50	4552											
KCNQ5	56479	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	73787542	73787542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttattttttcgtctttccttGtctatctggtggaaaaggat	8	6	3	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	73787542	G	T	73787542	3	4	47	1	0	0	0	0	1	0	0	0	8147	1377	48	5	868	5	KCNQ5	6	73787542	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	36450825	73787542	97327525	51	4553											
LAMA4	3910	broad.mit.edu;mdanderson.org	37	chr6	112480083	112480083	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcataaatccctgacgcattCtaaagaaaaaaattttaata	4	7	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	112480083	C	G	112480083	5	3	47	1	0	0	0	0	0	0	1	0	8670	927	32	5	3907	5	LAMA4	6	112480083	Splice_Site	SNP	C	TCGA-KN-8432-01A-11D-2310-10	38692541	112480083	58634984	52	4554											
MED23	9439	broad.mit.edu	37	chr6	131919846	131919846	+	Frame_Shift_Del	DEL	T	T	-													tcctatactcctcctccacaTtttttttcagattaaaacgg					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	131919846	T	-	131919846	7	5	47	1	0	1	0	1	0	0	0	0	9518	1493	52	0	1881	0	MED23	6	131919846	Frame_Shift_Del	DEL	T	TCGA-KN-8432-01A-11D-2310-10	19439763	131919846	39195221	53	4555											
TAAR2	9287	broad.mit.edu	37	chr6	132945376	132945376	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttttgtctgtgttcttttGaaatgtgaaagttcatgttg	9	3	3	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	132945376	G	C	132945376	3	2	47	1	0	0	0	0	1	0	0	0	15591	1281	45	5	1024	5	TAAR2	6	132945376	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	1025530	132945376	38169691	54	4556											
AHR	196	hgsc.bcm.edu;ucsc.edu	37	chr7	17369578	17369578	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtatcttttttctttagtcTgatgtcatacatcagagtgt	7	6	5	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	17369578	T	A	17369578	2	1	47	1	0	0	0	0	0	0	0	1	416	1567	55	5		5	AHR	7	17369578	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10		17369578	141769085	55	4557											
VWC2	375567	ucsc.edu	37	chr7	49815089	49815089	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagttccctcctggtcaccTgctgcctgatggtggctctg	11	15	2	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	49815089	T	C	49815089	3	2	47	1	0	0	0	0	1	0	0	0	17349	1580	55	2	60	2	VWC2	7	49815089	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	32445511	49815089	109323574	56	4558											
IKZF1	10320	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	50444370	50444370	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcccacagggaccaaggCagctcggctttgtcgggagt	15	12	0	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	50444370	C	T	50444370	2	4	47	1	0	0	0	0	0	0	0	1	7675	697	25	4		4	IKZF1	7	50444370	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	629281	50444370	108694293	57	4559											
GTF2IRD2B	389524	hgsc.bcm.edu	37	chr7	74563945	74563945	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aataataccacccagttggcCatattcatccgtggtgtcga	8	11	1	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	74563945	C	A	74563945	2	1	47	1	0	0	0	0	0	0	0	1	6928	581	21	5		5	GTF2IRD2B	7	74563945	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	24119575	74563945	84574718	58	4560											
MLL3	58508	mdanderson.org	37	chr7	151962294	151962294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtttgcatcttccttcGctataattaacagtgaaaca	5	10	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	151962294	G	A	151962294	3	1	47	1	0	0	0	0	1	0	0	0	9699	1101	38	1	13930	1	MLL3	7	151962294	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	77398349	151962294	7176369	59	4561											
XKR6	286046	broad.mit.edu	37	chr8	10755515	10755515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggagtggtccgtctcgatAtcgaatgcctactgcggtgg	15	9	1	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	10755515	A	C	10755515	3	2	47	1	0	0	0	0	1	0	0	0	17541	449	16	5	56	5	XKR6	8	10755515	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		10755515	135608507	60	4562											
INTS10	55174	broad.mit.edu	37	chr8	19680921	19680921	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttatatcaattatgtcacTaggtctactcaaatagaaaa	4	6	4	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	19680921	T	C	19680921	2	2	47	1	0	0	0	0	0	0	0	1	7837	1509	53	2		2	INTS10	8	19680921	Silent	SNP	T	TCGA-KN-8432-01A-11D-2310-10	8925406	19680921	126683101	61	4563											
KIAA1429	25962	broad.mit.edu;bcgsc.ca	37	chr8	95539559	95539559	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caagtcagcaattccatcttCatcactggaaatttgttcat	5	10	5	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	95539559	C	T	95539559	3	4	47	1	0	0	0	0	1	0	0	0	8292	835	29	4	4647	4	KIAA1429	8	95539559	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	75858638	95539559	50824463	62	4564											
STK3	6788	ucsc.edu	37	chr8	99779547	99779547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaggtacttgtttaattgCgacaacttgaccggattcct	8	9	0	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	99779547	C	T	99779547	3	4	47	1	0	0	0	0	1	0	0	0	15395	768	27	1	1351	1	STK3	8	99779547	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	4239988	99779547	46584475	63	4565											
VPS13B	157680	ucsc.edu;bcgsc.ca	37	chr8	100533136	100533136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgttacagctaatcaggCagcaaaagaagacactgtgg	10	7	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	100533136	C	T	100533136	3	4	47	1	0	0	0	0	1	0	0	0	17296	710	25	4	5026	4	VPS13B	8	100533136	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	753589	100533136	45830886	64	4566											
TG	7038	ucsc.edu	37	chr8	133911147	133911147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacctgttcgtcccagccTgcctagaagtaagggtctgg	12	11	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	133911147	T	C	133911147	3	2	47	1	0	0	0	0	1	0	0	0	15917	1580	55	2	3376	2	TG	8	133911147	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	33378011	133911147	12452875	65	4567											
BAI1	575	ucsc.edu;bcgsc.ca	37	chr8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccggaaccgcctcatccGcaagcgcttcctctgcctgg	9	19	2	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	143603450	G	A	143603450	3	1	47	1	0	0	0	0	1	0	0	0	1302	1087	38	1	3227	1	BAI1	8	143603450	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	9692303	143603450	2760572	66	4568											
TYRP1	7306	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	12695641	12695641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagatcagaagaaatactggGgccagatggcaacacgccac	12	10	1	4	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	12695641	G	A	12695641	3	1	47	1	0	0	0	0	1	0	0	0	16922	1232	43	3	518	3	TYRP1	9	12695641	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		12695641	128517790	67	4569											
PRSS3	5646	mdanderson.org	37	chr9	33797978	33797978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaactctcctcacctgccGtcatcaatgcccgcgtgtcc	6	18	5	0	rs145485932		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	33797978	G	A	33797978	3	1	47	1	0	0	0	0	1	0	0	0	12711	1145	40	1	577	1	PRSS3	9	33797978	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	21102337	33797978	107415453	68	4570											
TLE1	7088	broad.mit.edu;hgsc.bcm.edu	37	chr9	84303155	84303155	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgccggctctgcgggaacaTcgctctggcggcggccgggg	19	13	2	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	84303155	T	A	84303155	3	1	47	1	0	0	0	0	1	0	0	0	16042	1435	50	5	2391	5	TLE1	9	84303155	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	50505177	84303155	56910276	69	4571											
CORO2A	7464	broad.mit.edu;bcgsc.ca	37	chr9	100888937	100888937	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccaccttggcatcttcTcctccaacagggaggaagac	9	15	2	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	100888937	T	C	100888937	3	2	47	1	0	0	0	0	1	0	0	0	3785	1551	54	2	245	2	CORO2A	9	100888937	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	16585782	100888937	40324494	70	4572											
RAD23B	5887	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	110068852	110068852	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgaacctgcacctgctAgtgcagctaaacaagagaag	9	11	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	110068852	A	T	110068852	3	4	47	1	0	0	0	0	1	0	0	0	13075	420	15	5	435	5	RAD23B	9	110068852	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	9179915	110068852	31144579	71	4573											
PITRM1	10531	bcgsc.ca	37	chr10	3186494	3186494	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttcttaccatgaccagcTtcctaatgacctgggagcca	9	12	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	3186494	T	C	3186494	3	2	47	1	0	0	0	0	1	0	0	0	12033	1609	56	2	615	2	PITRM1	10	3186494	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10		3186494	132348253	72	4574											
FAM21C	253725	broad.mit.edu;mdanderson.org	37	chr10	46248632	46248632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accttatttcaaccagagtgAcctcttcacggaagcctccc	6	15	3	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	46248632	A	G	46248632	3	3	47	1	0	0	0	0	1	0	0	0	5587	275	10	2	1177	2	FAM21C	10	46248632	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	43062138	46248632	89286115	73	4575											
PLCE1	51196	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr10	95891977	95891977	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aacagaaaatacagttggatCtctactccatttcctcacca	4	12	2	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	95891977	C	T	95891977	3	4	47	1	0	0	0	0	1	0	0	0	12114	913	32	4	1545	4	PLCE1	10	95891977	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	49643345	95891977	39642770	74	4576											
UBQLN3	50613	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	5530008	5530008	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaagcattgggtccataaTatctgtgtacatagtgcaaa	9	6	1	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	5530008	T	C	5530008	3	2	47	1	0	0	0	0	1	0	0	0	17004	1406	49	4	1190	4	UBQLN3	11	5530008	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10		5530008	129476508	75	4577											
OR52N1	79473	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	5809593	5809593	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aacaagcatcacacccctaaGaaaagtgaggaacccagctt	7	12	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	5809593	G	A	5809593	3	1	47	1	0	0	0	0	1	0	0	0	11206	942	33	4	511	4	OR52N1	11	5809593	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	279585	5809593	129196923	76	4578											
OR1S2	219958	mdanderson.org	37	chr11	57970981	57970981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ataggagaagaagatgagtaCaaaggggaagatgataactg	14	2	0	6	rs11229278	byfrequency	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	57970981	C	T	57970981	3	4	47	1	0	0	0	0	1	0	0	0	11052	478	17	4	307	4	OR1S2	11	57970981	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	52161388	57970981	77035535	77	4579											
FERMT3	83706	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	63988121	63988121	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgttgccccccgtttccagCgaaagttcaaggccaagcag	10	14	1	0	rs121918295	bycluster	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	63988121	C	T	63988121	4	4	47	1	0	0	0	0	0	1	0	0	5868	760	27	1	1579	1	FERMT3	11	63988121	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	6017140	63988121	71018395	78	4580											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	64676833	64676833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcttccctccatcttcaTagatacctggagggggatgg	13	10	2	1	rs148849835	alternate_allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	64676833	T	C	64676833	3	2	47	1	0	0	0	0	1	0	0	0	1097	1406	49	4	3810	4	ATG2A	11	64676833	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	688712	64676833	70329683	79	4581											
FLI1	2313	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr11	128679073	128679073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgtatcagatcctgggccCgaccagcagtcgcctagcca	10	16	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	128679073	C	T	128679073	3	4	47	1	0	0	0	0	1	0	0	0	5973	652	23	1	833	1	FLI1	11	128679073	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	64002240	128679073	6327443	80	4582											
TAS2R30	259293	broad.mit.edu	37	chr12	11286136	11286137	+	Frame_Shift_Ins	INS	-	-	A													gaaagtaaatggcacataacINSagaagaaaggaggtcacagt					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	11286137	-	A	11286136	7	5	47	1	0	1	1	0	0	0	0	0	15674	465	17	0	255	0	TAS2R30	12	11286136	Frame_Shift_Ins	INS	-	TCGA-KN-8432-01A-11D-2310-10		11286136	122565759	81	4583											
SLC38A1	81539	broad.mit.edu	37	chr12	46633473	46633473	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatactcacctatttatctgAccattttctacttcggtgaa	4	10	3	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	46633473	A	G	46633473	2	3	47	1	0	0	0	0	0	0	0	1	14699	262	10	2		2	SLC38A1	12	46633473	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10	35347337	46633473	87218422	82	4584											
WNT1	7471	broad.mit.edu;hgsc.bcm.edu	37	chr12	49373357	49373365	+	In_Frame_Del	DEL	CTGATACGC	CTGATACGC	-													tgagccgcaaacagcggcgtCtgatacgccaaaatccgggg					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CTGATACGC	CTGATACGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	49373365	CTGATACGC	-	49373357	7	5	47	1	0	1	0	1	0	0	0	0	17487	912	32	0	217	0	WNT1	12	49373357	In_Frame_Del	DEL	CTGATACGC	TCGA-KN-8432-01A-11D-2310-10	2739884	49373357	84478538	83	4585	110	2									
WNT1	7471	bcgsc.ca	37	chr12	49373358	49373366	+	In_Frame_Del	DEL	CTGATACGC	CTGATACGC	-													gagccgcaaacagcggcgtcTgatacgccaaaatccgggga					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	CTGATACGC	CTGATACGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	49373366	CTGATACGC	-	49373358	7	5	47	1	0	1	0	1	0	0	0	0	17487	1580	55	0	218	0	WNT1	12	49373358	In_Frame_Del	DEL	CTGATACGC	TCGA-KN-8432-01A-11D-2310-10	1	49373358	84478537	84	4586	110	2									
KRT6B	3854	mdanderson.org	37	chr12	52845665	52845665	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatggagatcctcttggaGccccccaggccatacagact	9	15	1	2	rs419374	bycluster;byfrequency;by2hit2allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	52845665	G	T	52845665	2	4	47	1	0	0	0	0	0	0	0	1	8542	958	34	5		5	KRT6B	12	52845665	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	3472307	52845665	81006230	85	4587											
N4BP2L2	10443	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr13	33016882	33016882	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agataaattatgtagcacaaAagaaggaatataatttttgt	7	2	0	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	33016882	A	C	33016882	3	2	47	1	0	0	0	0	1	0	0	0	10190	14	1	5	478	5	N4BP2L2	13	33016882	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		33016882	82152996	86	4588											
EPSTI1	94240	ucsc.edu;bcgsc.ca	37	chr13	43469222	43469222	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacttttgccttggagtcGgtccagaaaagcattattta	9	7	0	2	rs201385523		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	43469222	G	A	43469222	4	1	47	1	0	0	0	0	0	1	0	0	5237	1124	39	1	373	1	EPSTI1	13	43469222	Nonsense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	10452340	43469222	71700656	87	4589											
PCDH8	5100	broad.mit.edu	37	chr13	53420463	53420465	+	In_Frame_Del	DEL	GGT	GGT	-													accacgaagctgacagttgcGgtggtggtgagcgggggacg					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	53420465	GGT	-	53420463	7	5	47	1	0	1	0	1	0	0	0	0	11596	1103	39	0	1115	0	PCDH8	13	53420463	In_Frame_Del	DEL	GGT	TCGA-KN-8432-01A-11D-2310-10	9951241	53420463	61749415	88	4590											
ESR2	2100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	64727212	64727212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catgtgtaccaactccttgtCggccaacttggtcagggaca	10	12	1	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	64727212	C	T	64727212	3	4	47	1	0	0	0	0	1	0	0	0	5296	884	31	1	791	1	ESR2	14	64727212	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10		64727212	42622328	89	4591											
EIF2AK4	440275	ucsc.edu	37	chr15	40235659	40235659	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttaaaatctcgcctagaAgaactggccaagaaacactg	8	9	1	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	40235659	A	G	40235659	2	3	47	1	0	0	0	0	0	0	0	1	5036	69	3	2		2	EIF2AK4	15	40235659	Silent	SNP	A	TCGA-KN-8432-01A-11D-2310-10		40235659	62295733	90	4592											
SQRDL	58472	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	45954211	45954211	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtgccaaacaattgtcctCatctggtcgtcccacggcaa	9	13	2	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	45954211	C	T	45954211	3	4	47	1	0	0	0	0	1	0	0	0	15229	838	29	4	299	4	SQRDL	15	45954211	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	5718552	45954211	56577181	91	4593											
TRPM7	54822	broad.mit.edu;mdanderson.org	37	chr15	50884111	50884111	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatttgccaaacttacctaCaaatgctccaaattctgtat	4	10	1	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	50884111	C	T	50884111	3	4	47	1	0	0	0	0	1	0	0	0	16696	478	17	4	1332	4	TRPM7	15	50884111	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	4929900	50884111	51647281	92	4594											
SLTM	79811	mdanderson.org	37	chr15	59191919	59191919	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttcagaatctgtaattttCacatttttacctgtttctag	5	8	4	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	59191919	C	A	59191919	2	1	47	1	0	0	0	0	0	0	0	1	14852	813	29	5		5	SLTM	15	59191919	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	8307808	59191919	43339473	93	4595											
CD276	80381	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	73995325	73995325	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcacagcatcctgcgggtgGtgctgggtgcaaatggcacc	15	11	0	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	73995325	G	T	73995325	3	4	47	1	0	0	0	0	1	0	0	0	3021	1261	44	5	641	5	CD276	15	73995325	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	14803406	73995325	28536067	94	4596											
ZNF592	9640	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	85334093	85334093	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggagaattgcctgcactAtgcccgcaaggtgggctaca	12	10	0	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	85334093	A	G	85334093	3	3	47	1	0	0	0	0	1	0	0	0	18127	449	16	4	2384	4	ZNF592	15	85334093	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	11338768	85334093	17197299	95	4597											
SOX8	30812	ucsc.edu	37	chr16	1034902	1034902	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcgacgtccacgagttcgAccagtacctgcccctgggcg	11	16	0	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	1034902	A	G	1034902	3	3	47	1	0	0	0	0	1	0	0	0	15055	275	10	2	867	2	SOX8	16	1034902	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		1034902	89319851	96	4598											
ARL6IP1	23204	hgsc.bcm.edu	37	chr16	18806888	18806888	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaatttcatggaatctttgCtgttgttcagtggtcctaga	9	7	3	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	18806888	C	T	18806888	2	4	47	1	0	0	0	0	0	0	0	1	946	796	28	4		4	ARL6IP1	16	18806888	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	17771986	18806888	71547865	97	4599											
NLRC5	84166	ucsc.edu;bcgsc.ca	37	chr16	57057697	57057697	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttcctttgctttttcagGcctgaagcgcccacatcaga	7	15	2	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	57057697	G	T	57057697	3	4	47	1	0	0	0	0	1	0	0	0	10549	1217	42	5	366	5	NLRC5	16	57057697	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	38250809	57057697	33297056	98	4600											
CALB2	794	broad.mit.edu;ucsc.edu	37	chr16	71419536	71419536	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccttttgaaggatctgtaCgagaaaaacaaaaaggtgag	11	6	1	3	rs139080757		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	71419536	C	T	71419536	2	4	47	1	0	0	0	0	0	0	0	1	2599	547	19	1		1	CALB2	16	71419536	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	14361839	71419536	18935217	99	4601											
FANCA	2175	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	89838101	89838101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctaccatgtgttcccgtggCtccagtctcggcgtgttgat	11	13	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	89838101	C	T	89838101	2	4	47	1	0	0	0	0	0	0	0	1	5711	796	28	4		4	FANCA	16	89838101	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	18418565	89838101	516652	100	4602											
SUPT6H	6830	hgsc.bcm.edu;bcgsc.ca	37	chr17	27028052	27028052	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gccagcccatcaccacccctCagtaccaccagctccaggcc	6	22	2	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	27028052	C	T	27028052	4	4	47	1	0	0	0	0	0	1	0	0	15500	827	29	4	5038	4	SUPT6H	17	27028052	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10		27028052	54167158	101	4603											
ERBB2	2064	bcgsc.ca	37	chr17	37881117	37881117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtccgggaaaaccgcggaCgcctgggctcccaggacctg	14	14	0	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	37881117	C	T	37881117	3	4	47	1	0	0	0	0	1	0	0	0	5245	536	19	1	2524	1	ERBB2	17	37881117	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	10853065	37881117	43314093	102	4604											
RAPGEFL1	51195	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr17	38346943	38346943	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggagacacagagatccacCgagtggagcctgaggacgtt	14	10	0	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	38346943	C	T	38346943	4	4	47	1	0	0	0	0	0	1	0	0	13141	644	23	1	668	1	RAPGEFL1	17	38346943	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	465826	38346943	42848267	103	4605											
STAT5B	6777	broad.mit.edu	37	chr17	40364022	40364022	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgaactgggaccaggAcacagacaggccactgtagt	12	11	0	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	40364022	A	G	40364022	3	3	47	1	0	0	0	0	1	0	0	0	15369	275	10	2	731	2	STAT5B	17	40364022	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10	2017079	40364022	40831188	104	4606											
SCN4A	6329	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	62021160	62021160	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccaagcttcttcatggcGttatagtatttcttctgttc	8	9	4	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	62021160	G	A	62021160	2	1	47	1	0	0	0	0	0	0	0	1	14017	1136	40	1		1	SCN4A	17	62021160	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	21657138	62021160	19174050	105	4607											
CCDC137	339230	broad.mit.edu;bcgsc.ca	37	chr17	79633801	79633801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccggcgtggagatggCgggagctggtcgcggagcag	20	11	0	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	79633801	C	T	79633801	3	4	47	1	0	0	0	0	1	0	0	0	2796	768	27	1	7	1	CCDC137	17	79633801	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	17612641	79633801	1561409	106	4608											
MALT1	10892	broad.mit.edu	37	chr18	56414969	56414969	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgcatttatttcaagtttCgctcaccatgcttcatgtca	6	10	4	0	rs200126163		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	56414969	C	T	56414969	2	4	47	1	0	0	0	0	0	0	0	1	9279	883	31	1		1	MALT1	18	56414969	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10		56414969	21662279	107	4609											
ANGPTL4	51129	hgsc.bcm.edu;mdanderson.org	37	chr19	8429323	8429323	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcgctttgcgtcctgggacGagatgaatgtcctggcgcac	14	12	0	2	rs116843064	bycluster;byfrequency;by1000genomes	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	8429323	G	A	8429323	3	1	47	1	0	0	0	0	1	0	0	0	616	1059	37	1	120	1	ANGPTL4	19	8429323	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		8429323	50699660	108	4610											
RLN3	117579	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	14139176	14139176	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgggggctcccggtggagaCgatcagacatcctggcccac	15	14	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	14139176	C	T	14139176	4	4	47	1	0	0	0	0	0	1	0	0	13488	528	19	1	162	1	RLN3	19	14139176	Nonsense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	5709853	14139176	44989807	109	4611											
CAPNS1	826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	36632120	36632120	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcggagtcatcagcgccatCaggtaaggcggagactatca	14	10	4	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	36632120	C	T	36632120	2	4	47	1	0	0	0	0	0	0	0	1	2658	816	29	4		4	CAPNS1	19	36632120	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	22492944	36632120	22496863	110	4612											
KCNN4	3783	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	44276195	44276195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatcttgccccacatggtgCccggcaccacgtcaccatag	9	17	2	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	44276195	C	T	44276195	3	4	47	1	0	0	0	0	1	0	0	0	8142	739	26	3	527	3	KCNN4	19	44276195	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	7644075	44276195	14852788	111	4613											
NUCB1	4924	broad.mit.edu	37	chr19	49425109	49425111	+	In_Frame_Del	DEL	AGC	AGC	-													gctgcacatggagcagcggaAgcagcagcagcagcagcagc					novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		-	49425111	AGC	-	49425109	7	5	47	1	0	1	0	1	0	0	0	0	10797	72	3	0	1241	0	NUCB1	19	49425109	In_Frame_Del	DEL	AGC	TCGA-KN-8432-01A-11D-2310-10	5148914	49425109	9703874	112	4614											
KIR2DL1	3802	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	55285024	55285024	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctacagatgctacggttctGttactcactccccctatcag	6	15	3	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	55285024	G	C	55285024	3	2	47	1	0	0	0	0	1	0	0	0	8377	1377	48	5	320	5	KIR2DL1	19	55285024	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	5859915	55285024	3843959	113	4615											
ZNF264	9422	broad.mit.edu	37	chr19	57724079	57724079	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccacactggagagaagccCtataaatgtagtgaatgtgg	11	7	0	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	57724079	C	T	57724079	2	4	47	1	0	0	0	0	0	0	0	1	17909	668	24	4		4	ZNF264	19	57724079	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	2439055	57724079	1404904	114	4616											
SLA2	84174	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr20	35260999	35260999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcaccgagcttactcaccTctcctggtctggctctcccg	9	17	4	0	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	35260999	T	A	35260999	3	1	47	1	0	0	0	0	1	0	0	0	14462	1565	54	5	420	5	SLA2	20	35260999	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10		35260999	27764521	115	4617											
DHX35	60625	broad.mit.edu	37	chr20	37621034	37621034	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcccacgagaggacctTgtacactgacattgccattg	10	11	0	3	rs200532343	alternate_allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	37621034	T	G	37621034	3	3	47	1	0	0	0	0	1	0	0	0	4545	1821	63	5	574	5	DHX35	20	37621034	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	2360035	37621034	25404486	116	4618											
SULF2	55959	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	46313215	46313215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgacatgagggtctgcaagCgcttccgctggagcatgttg	14	11	1	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	46313215	C	T	46313215	3	4	47	1	0	0	0	0	1	0	0	0	15471	768	27	1	1828	1	SULF2	20	46313215	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	8692181	46313215	16712305	117	4619											
KRTAP10-4	386672	hgsc.bcm.edu;mdanderson.org	37	chr21	45993747	45993747	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actgcccagagagctgctgcGagcccccctgctgcgccccc	11	20	0	1	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	45993747	G	A	45993747	3	1	47	1	0	0	0	0	1	0	0	0	8572	1059	37	1	114	1	KRTAP10-4	21	45993747	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		45993747	2136148	118	4620											
KRTAP10-6	386674	mdanderson.org	37	chr21	46011324	46011324	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggcagggcgggagcacaTggggcggcagaggagggaaa	22	7	0	1	rs1785472	by2hit2allele	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		C	46011324	T	C	46011324	3	2	47	1	0	0	0	0	1	0	0	0	8574	1464	51	4	59	4	KRTAP10-6	21	46011324	Missense_Mutation	SNP	T	TCGA-KN-8432-01A-11D-2310-10	17577	46011324	2118571	119	4621											
KRTAP10-12	386685	broad.mit.edu	37	chr21	46117243	46117243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgagcccccctgctgcGccccggccccctgcctgagc	12	21	0	2	rs199900483		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	46117243	G	A	46117243	3	1	47	1	0	0	0	0	1	0	0	0	8569	1087	38	1	129	1	KRTAP10-12	21	46117243	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10	105919	46117243	2012652	120	4622											
PHF5A	84844	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	41863526	41863526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccacagatcacacagcGcccctggtaagatccatagt	7	15	1	2	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	41863526	G	A	41863526	3	1	47	1	0	0	0	0	1	0	0	0	11917	1087	38	1	171	1	PHF5A	22	41863526	Missense_Mutation	SNP	G	TCGA-KN-8432-01A-11D-2310-10		41863526	9441040	121	4623											
ODF3B	440836	hgsc.bcm.edu	37	chr22	50970068	50970068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggagtaggcgggggcgccgtCggtgccgcgcacggtcatgc	20	12	1	0	rs141953471	by1000genomes	TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	50970068	C	T	50970068	3	4	47	1	0	0	0	0	1	0	0	0	10909	884	31	1	537	1	ODF3B	22	50970068	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	9106542	50970068	334498	122	4624											
EIF2S3	1968	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	24075766	24075766	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagatttataagcttgatgAcccaagttgccctcggccag	9	10	0	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	24075766	A	G	24075766	3	3	47	1	0	0	0	0	1	0	0	0	5048	275	10	2	292	2	EIF2S3	23	24075766	Missense_Mutation	SNP	A	TCGA-KN-8432-01A-11D-2310-10		24075766	131194794	123	4625											
FAM47A	158724	bcgsc.ca	37	chrX	34148877	34148877	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccgacgagtcttgggaggctCcgagcggagactggacgtcc	16	12	1	1	rs5973088		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		G	34148877	C	G	34148877	3	3	47	1	0	0	0	0	1	0	0	0	5618	864	30	5	860	5	FAM47A	23	34148877	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	10073111	34148877	121121683	124	4626											
FAM47C	442444	broad.mit.edu	37	chrX	37028121	37028121	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagtagcgtatctcatctCcgcccagagcctcctgagac	10	14	2	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	37028121	C	T	37028121	2	4	47	1	0	0	0	0	0	0	0	1	5620	842	30	3		3	FAM47C	23	37028121	Silent	SNP	C	TCGA-KN-8432-01A-11D-2310-10	2879244	37028121	118242439	125	4627											
MAGED2	10916	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	54837700	54837700	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcaaatgatttggtgaaGtaccttttggctaaagacca	10	7	0	3	novel		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		A	54837700	G	A	54837700	2	1	47	1	0	0	0	0	0	0	0	1	9261	1020	36	4		4	MAGED2	23	54837700	Silent	SNP	G	TCGA-KN-8432-01A-11D-2310-10	17809579	54837700	100432860	126	4628											
RBMX	27316	mdanderson.org	37	chrX	135960230	135960230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcttgttccaccttgatggCttttccatctaatgactaaa	7	10	1	2	rs199717308		TCGA-KN-8432-01A-11D-2310-10	TCGA-KN-8432-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	85ed2434-da94-4333-90ca-6ca4691cbdd3	7d556f90-8997-4e2f-9f30-23814aa3c222		T	135960230	C	T	135960230	3	4	47	1	0	0	0	0	1	0	0	0	13243	797	28	4	1022	4	RBMX	23	135960230	Missense_Mutation	SNP	C	TCGA-KN-8432-01A-11D-2310-10	81122530	135960230	19310330	127	4629											
RER1	11079	mdanderson.org	37	chr1	2333768	2333768	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcttctgtatcacgatgaAgaggcaaatcaaggtaaagc	10	8	4	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	2333768	A	G	2333768	3	3	48	1	0	0	0	0	1	0	0	0	13322	72	3	2	506	2	RER1	1	2333768	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10		2333768	246916853	1	4630											
KDM1A	23028	mdanderson.org	37	chr1	23408744	23408744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtgtctcgttggcgtgCtgatccctgggctcggggct	17	10	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	23408744	C	T	23408744	3	4	48	1	0	0	0	0	1	0	0	0	8183	797	28	4	2408	4	KDM1A	1	23408744	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	21074976	23408744	225841877	2	4631											
CNR2	1269	mdanderson.org	37	chr1	24201162	24201162	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcacacacttcttccagtGagccaggcagtgatgggcag	11	13	2	2	rs2229579	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	24201162	G	A	24201162	3	1	48	1	0	0	0	0	1	0	0	0	3661	1290	45	4	140	4	CNR2	1	24201162	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	792418	24201162	225049459	3	4632											
NASP	4678	mdanderson.org	37	chr1	46073372	46073372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaggaggtcaggagaagcaGggagaggtaattgtgagcat	17	3	1	3	rs202027114		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	46073372	G	C	46073372	3	2	48	1	0	0	0	0	1	0	0	0	10250	991	35	5	888	5	NASP	1	46073372	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	21872210	46073372	203177249	4	4633											
ZZZ3	26009	mdanderson.org	37	chr1	78097667	78097667	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaatattgagtcttgccTctgagggtggtttacttact	10	8	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	78097667	T	C	78097667	3	2	48	1	0	0	0	0	1	0	0	0	18357	1551	54	2	1382	2	ZZZ3	1	78097667	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	32024295	78097667	171152954	5	4634											
USP33	23032	mdanderson.org	37	chr1	78177501	78177501	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcaatttggcaagtatgAcaaatgtacagatggttgac	10	7	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	78177501	A	G	78177501	2	3	48	1	0	0	0	0	0	0	0	1	17170	273	10	2		2	USP33	1	78177501	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	79834	78177501	171073120	6	4635											
CELF3	11189	mdanderson.org	37	chr1	151678746	151678746	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgttgaggtggtggtggggg	20	7	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	151678746	C	T	151678746	2	4	48	1	0	0	0	0	0	0	0	1	3246	796	28	4		4	CELF3	1	151678746	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	73501245	151678746	97571875	7	4636											
FLG2	388698	mdanderson.org	37	chr1	152325171	152325171	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctagtggtatctcctgtctgTccatgagtagttccatgtct	9	10	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	152325171	T	C	152325171	2	2	48	1	0	0	0	0	0	0	0	1	5972	1654	58	2		2	FLG2	1	152325171	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	646425	152325171	96925450	8	4637											
ATP8B2	57198	mdanderson.org	37	chr1	154315311	154315311	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctccttcaatcctctggctGacaagaagttcttattttgg	7	10	4	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	154315311	G	A	154315311	3	1	48	1	0	0	0	0	1	0	0	0	1199	1290	45	4	1614	4	ATP8B2	1	154315311	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	1990140	154315311	94935310	9	4638											
SELL	6402	mdanderson.org	37	chr1	169673838	169673838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgaagtttcccaaagGgtgagtacagtccatggtac	12	8	0	2	rs2229569	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	169673838	G	A	169673838	3	1	48	1	0	0	0	0	1	0	0	0	14113	1232	43	3	501	3	SELL	1	169673838	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	15358527	169673838	79576783	10	4639											
KIAA1614	57710	broad.mit.edu	37	chr1	180910361	180910362	+	Frame_Shift_Ins	INS	-	-	C													acagtgtggagcagttgcagINScccgccccgcctggcctgac					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	180910362	-	C	180910361	7	5	48	1	0	1	1	0	0	0	0	0	8309	962	34	0	3125	0	KIAA1614	1	180910361	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	11236523	180910361	68340260	11	4640											
KCNT2	343450	mdanderson.org	37	chr1	196227480	196227480	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttttctgctcagtcttcGggcccactgcatgctttttc	8	14	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	196227480	G	T	196227480	2	4	48	1	0	0	0	0	0	0	0	1	8153	1124	39	5		5	KCNT2	1	196227480	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	15317119	196227480	53023141	12	4641											
SLC45A3	85414	mdanderson.org	37	chr1	205628616	205628616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcacccaccaccacacgtaCggagacatcacaggcagagg	9	16	2	2	rs137949511	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	205628616	C	T	205628616	3	4	48	1	0	0	0	0	1	0	0	0	14740	536	19	1	257	1	SLC45A3	1	205628616	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	9401136	205628616	43622005	13	4642											
IKBKE	9641	mdanderson.org	37	chr1	206650108	206650108	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atctctggagcattggagtgAccttgtaccatgcagccact	10	11	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	206650108	A	T	206650108	3	4	48	1	0	0	0	0	1	0	0	0	7673	275	10	5	646	5	IKBKE	1	206650108	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1021492	206650108	42600513	14	4643											
GALNT14	79623	mdanderson.org	37	chr2	31189098	31189098	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcctgagcagcgtggagcGggcctcgttgtggaaggtga	19	8	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	31189098	G	A	31189098	3	1	48	1	0	0	0	0	1	0	0	0	6266	1116	39	1	1340	1	GALNT14	2	31189098	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10		31189098	212010275	15	4644											
GCC2	9648	mdanderson.org	37	chr2	109088337	109088337	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagagttagaagaaatacAgtcagaaaaagaggccctgc	11	6	1	5	rs139623765	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	109088337	A	G	109088337	3	3	48	1	0	0	0	0	1	0	0	0	6340	188	7	2	2574	2	GCC2	2	109088337	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	77899239	109088337	134111036	16	4645											
POTEE	445582	mdanderson.org	37	chr2	131981279	131981279	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaaagaggacagctctgaTaaaggtatgcagtagccaac	10	8	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	131981279	T	C	131981279	3	2	48	1	0	0	0	0	1	0	0	0	12344	1406	49	4	638	4	POTEE	2	131981279	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	22892942	131981279	111218094	17	4646											
CSRNP3	80034	broad.mit.edu;mdanderson.org	37	chr2	166532972	166532972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacgaagagctctgctgCgtgcctctggagtgaaaaag	12	8	2	2	rs150240455	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	166532972	C	T	166532972	3	4	48	1	0	0	0	0	1	0	0	0	3996	768	27	1	569	1	CSRNP3	2	166532972	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	34551693	166532972	76666401	18	4647											
STAT4	6775	mdanderson.org	37	chr2	191937868	191937868	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactttgtgctccacattccTctgtctttctgaaactgaag	6	12	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	191937868	T	C	191937868	3	2	48	1	0	0	0	0	1	0	0	0	15367	1550	54	2	1905	2	STAT4	2	191937868	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	25404896	191937868	51261505	19	4648											
STRADB	55437	mdanderson.org	37	chr2	202343187	202343187	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtcaggtgtagactctggGattggagaaagtgtgcttgt	15	5	2	2	rs200083822		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	202343187	G	A	202343187	2	1	48	1	0	0	0	0	0	0	0	1	15425	1161	41	3		3	STRADB	2	202343187	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	10405319	202343187	40856186	20	4649											
CYP20A1	57404	mdanderson.org	37	chr2	204154552	204154552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactccagtttctgcccagCttcaagatattgaaggaaaa	8	9	2	3	rs1048013	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	204154552	C	T	204154552	3	4	48	1	0	0	0	0	1	0	0	0	4183	797	28	4	1074	4	CYP20A1	2	204154552	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1811365	204154552	39044821	21	4650											
NDUFS1	4719	mdanderson.org	37	chr2	206994915	206994915	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagggttcttccgaattgcTtccaccccaggcttatagcc	10	13	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	206994915	T	C	206994915	2	2	48	1	0	0	0	0	0	0	0	1	10370	1606	56	2		2	NDUFS1	2	206994915	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2840363	206994915	36204458	22	4651											
STK16	8576	bcgsc.ca	37	chr2	220111919	220111919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaatcctttggctgctgctgGggatctgcagaggccttgag	14	9	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	220111919	G	T	220111919	3	4	48	1	0	0	0	0	1	0	0	0	15389	1232	43	5	401	5	STK16	2	220111919	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	13117004	220111919	23087454	23	4652											
UGT1A9	54600	mdanderson.org	37	chr2	234581157	234581157	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcctatgtccccagaAttctcttagggttctcagat	6	12	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	234581157	A	C	234581157	3	2	48	1	0	0	0	0	1	0	0	0	17058	101	4	5	579	5	UGT1A9	2	234581157	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	14469238	234581157	8618216	24	4653											
SCN11A	11280	mdanderson.org	37	chr3	38912235	38912235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catccagcccttaaatgttgCctgcaacaaaagcagaaaaa	6	11	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	38912235	C	T	38912235	3	4	48	1	0	0	0	0	1	0	0	0	14010	753	26	3	1635	3	SCN11A	3	38912235	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		38912235	159110195	25	4654											
ZNF445	353274	mdanderson.org	37	chr3	44492834	44492834	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccaggaagtcacgtgcTtctatttcatagggaggctc	11	11	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	44492834	T	C	44492834	2	2	48	1	0	0	0	0	0	0	0	1	18023	1606	56	2		2	ZNF445	3	44492834	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	5580599	44492834	153529596	26	4655											
NBEAL2	23218	mdanderson.org	37	chr3	47042507	47042507	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcaaacctctgaggaagAgttgtgcaatctgctcacca	9	11	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	47042507	A	G	47042507	3	3	48	1	0	0	0	0	1	0	0	0	10267	304	11	2	4432	2	NBEAL2	3	47042507	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2549673	47042507	150979923	27	4656											
COL7A1	1294	hgsc.bcm.edu;ucsc.edu	37	chr3	48602898	48602898	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagcatggagctgggagccGgcagtgtctgcagcataact	14	10	1	0	rs116591500	bycluster;byfrequency;by1000genomes	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	48602898	G	A	48602898	2	1	48	1	0	0	0	0	0	0	0	1	3733	1103	39	1		1	COL7A1	3	48602898	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	1560391	48602898	149419532	28	4657											
CHDH	55349	mdanderson.org	37	chr3	53856589	53856589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaaatagcaccctgctcaCaagcgtctcggcctcggcct	8	17	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	53856589	C	T	53856589	3	4	48	1	0	0	0	0	1	0	0	0	3362	478	17	4	1024	4	CHDH	3	53856589	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	5253691	53856589	144165841	29	4658											
EPHA3	2042	mdanderson.org	37	chr3	89498483	89498483	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgttctctgggaggtgatgTcttatggagagagaccatac	13	6	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	89498483	T	C	89498483	3	2	48	1	0	0	0	0	1	0	0	0	5207	1667	58	2	2535	2	EPHA3	3	89498483	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	35641894	89498483	108523947	30	4659											
OR5H6	79295	mdanderson.org	37	chr3	97983656	97983656	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcatgctttaatccatgaAgctttttcattcagattaac	4	9	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	97983656	A	G	97983656	2	3	48	1	0	0	0	0	0	0	0	1	11242	69	3	2		2	OR5H6	3	97983656	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8485173	97983656	100038774	31	4660											
NIT2	56954	mdanderson.org	37	chr3	100073671	100073671	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcgtgtattcagacataGgtaagattttcctgggcatg	10	7	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	100073671	G	A	100073671	3	1	48	1	0	0	0	0	1	0	0	0	10513	1014	35	4	773	4	NIT2	3	100073671	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	2090015	100073671	97948759	32	4661											
HCLS1	3059	hgsc.bcm.edu	37	chr3	121351315	121351315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggctcgggctcaggctcGggctcaggctcaggctctgc	15	14	5	0	rs80289672	bycluster	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	121351315	G	A	121351315	2	1	48	1	0	0	0	0	0	0	0	1	7053	1103	39	1		1	HCLS1	3	121351315	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	21277644	121351315	76671115	33	4662											
IGSF10	285313	mdanderson.org	37	chr3	151165120	151165120	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgttgattggttgtgccTtgtatttggcttgacatggt	13	4	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	151165120	T	C	151165120	2	2	48	1	0	0	0	0	0	0	0	1	7658	1606	56	2		2	IGSF10	3	151165120	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	29813805	151165120	46857310	34	4663											
NMD3	51068	mdanderson.org	37	chr3	160945096	160945096	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccagggaacttcttgctTtgtgcttgaaaaaaatcaaa	7	7	2	1	rs138466882		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	160945096	T	C	160945096	2	2	48	1	0	0	0	0	0	0	0	1	10567	1838	64	4		4	NMD3	3	160945096	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	9779976	160945096	37077334	35	4664											
WDR49	151790	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	167245753	167245753	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catgaggttggaatgatcttAtcagagttggggccttggtg	15	5	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	167245753	A	T	167245753	3	4	48	1	0	0	0	0	1	0	0	0	17408	449	16	5	710	5	WDR49	3	167245753	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6300657	167245753	30776677	36	4665											
ALG3	10195	broad.mit.edu;mdanderson.org	37	chr3	183960376	183960376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagagctgcagcaggatgaCggcatggcatatgtgcaggg	16	9	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	183960376	C	T	183960376	3	4	48	1	0	0	0	0	1	0	0	0	520	536	19	1	77	1	ALG3	3	183960376	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	16714623	183960376	14062054	37	4666											
MUC4	4585	mdanderson.org	37	chr3	195506655	195506655	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggaagaggggtggcatgTcctgtggatgccgaggaaac	17	7	0	1	rs200897653		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	195506655	T	A	195506655	2	1	48	1	0	0	0	0	0	0	0	1	10056	1654	58	5		5	MUC4	3	195506655	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	11546279	195506655	2515775	38	4667			1	44		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	broad.mit.edu;mdanderson.org	37	chr3	195506822	195506822	+	Missense_Mutation	SNP	C	C	T													tgtggaagctgaggaaaggcCggtaacaggaagaggggtgg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	195506822	C	T	195506822	3	4	48	1	0	0	0	0	1	0	0	0	10056	652	23	1		1	MUC4	3	195506822	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	167	195506822	2515608	39	4668	111	2	1	44		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	chr3	195506826	195506826	+	Silent	SNP	A	A	G													gaagctgaggaaaggccggtAacaggaagaggggtggcgtg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	195506826	A	G	195506826	2	3	48	1	0	0	0	0	0	0	0	1	10056	349	13	4		4	MUC4	3	195506826	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4	195506826	2515604	40	4669	111	2	1	44		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	chr3	195506946	195506946	+	Silent	SNP	T	T	G													ggaagaggggtggcgtgaccTgtggatgctgaggaagcgtc					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	195506946	T	G	195506946	2	3	48	1	0	0	0	0	0	0	0	1	10056	1567	55	5		5	MUC4	3	195506946	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	120	195506946	2515484	41	4670	112	2	1	44		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	chr3	195506955	195506955	+	Silent	SNP	T	T	C													gtggcgtgacctgtggatgcTgaggaagcgtcggtgacagg					rs201420433		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	195506955	T	C	195506955	2	2	48	1	0	0	0	0	0	0	0	1	10056	1567	55	2		2	MUC4	3	195506955	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	9	195506955	2515475	42	4671	112	2	1	44		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	chr3	195509127	195509127	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagggctAgtgacaggaagaggcgtggt	20	4	0	3	rs200879287		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	195509127	A	G	195509127	2	3	48	1	0	0	0	0	0	0	0	1	10056	407	15	2		2	MUC4	3	195509127	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2172	195509127	2513303	43	4672			1	44		7	5	4056	N	T_C_A	4.095918e-08
MUC4	4585	mdanderson.org	37	chr3	195510710	195510710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggatgctgaggaagtgcTggtgacaggaagaggggtgg	21	3	0	3	rs75657645	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	195510710	T	C	195510710	3	2	48	1	0	0	0	0	1	0	0	0	10056	1580	55	2		2	MUC4	3	195510710	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1583	195510710	2511720	44	4673			1	44		7	5	4056	N	T_C_A	4.095918e-08
AFAP1	60312	mdanderson.org	37	chr4	7770723	7770723	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttccagggtccggtgccGgaacactggagacttaacgg	14	10	0	1	rs2285761	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	7770723	G	T	7770723	2	4	48	1	0	0	0	0	0	0	0	1	353	1115	39	5		5	AFAP1	4	7770723	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10		7770723	183383553	45	4674											
PPARGC1A	10891	mdanderson.org	37	chr4	23814445	23814445	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatactctctgcgatattcTtccctcttcagcctctcgtg	5	15	6	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	23814445	T	C	23814445	2	2	48	1	0	0	0	0	0	0	0	1	12380	1606	56	2		2	PPARGC1A	4	23814445	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	16043722	23814445	167339831	46	4675											
SEC31A	22872	mdanderson.org	37	chr4	83774804	83774804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acattccctgcacaaatataGcagagacatgcttgagtctg	8	10	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	83774804	G	A	83774804	2	1	48	1	0	0	0	0	0	0	0	1	14095	963	34	4		4	SEC31A	4	83774804	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	59960359	83774804	107379472	47	4676											
DMP1	1758	mdanderson.org	37	chr4	88584283	88584283	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaagccattctgaggaAgacgacagtgactctcaaga	12	8	2	4	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	88584283	A	G	88584283	2	3	48	1	0	0	0	0	0	0	0	1	4620	69	3	2		2	DMP1	4	88584283	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4809479	88584283	102569993	48	4677											
HERC6	55008	mdanderson.org	37	chr4	89363472	89363472	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgaaactttcagtgaaAgagatcacccaacatcaata	6	10	3	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	89363472	A	G	89363472	3	3	48	1	0	0	0	0	1	0	0	0	7120	64	3	2	2816	2	HERC6	4	89363472	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	779189	89363472	101790804	49	4678											
FBXW7	55294	mdanderson.org	37	chr4	153332484	153332484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtatagaatggggaggAgagttggtgaacgggcaggt	18	2	0	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	153332484	A	G	153332484	3	3	48	1	0	0	0	0	1	0	0	0	5818	304	11	2	2111	2	FBXW7	4	153332484	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	63969012	153332484	37821792	50	4679											
FHDC1	85462	broad.mit.edu	37	chr4	153896828	153896829	+	Frame_Shift_Ins	INS	-	-	G													ccgactccagacccagaggcINSggggacccggaggaaggcgg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	153896829	-	G	153896828	7	5	48	1	0	1	1	0	0	0	0	0	5925	755	27	0	2427	0	FHDC1	4	153896828	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	564344	153896828	37257448	51	4680											
GRIA2	2891	mdanderson.org	37	chr4	158257800	158257800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtttgaagatggaagagAaacacaaagtagtgaatcaa	12	3	1	4	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	158257800	A	G	158257800	3	3	48	1	0	0	0	0	1	0	0	0	6826	246	9	4	1787	4	GRIA2	4	158257800	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4360972	158257800	32896476	52	4681											
CPE	1363	mdanderson.org	37	chr4	166385729	166385729	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagatggctttgagaaggcAgcgtctcaggtgagtgccag	15	9	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	166385729	A	G	166385729	2	3	48	1	0	0	0	0	0	0	0	1	3828	175	7	2		2	CPE	4	166385729	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8127929	166385729	24768547	53	4682											
DDX60L	91351	mdanderson.org	37	chr4	169374381	169374381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaaagccacacagaggcaaCgcagtctgcagaaatcttcc	9	12	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	169374381	C	T	169374381	3	4	48	1	0	0	0	0	1	0	0	0	4411	536	19	1	4354	1	DDX60L	4	169374381	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2988652	169374381	21779895	54	4683											
C4orf27	54969	mdanderson.org	37	chr4	170678993	170678993	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtacctgcggcccctcTccgccgggcctgcgcttccc	12	20	1	0	rs11540095	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	170678993	T	C	170678993	2	2	48	1	0	0	0	0	0	0	0	1	2279	1538	54	2		2	C4orf27	4	170678993	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1304612	170678993	20475283	55	4684											
FRG1	2483	mdanderson.org	37	chr4	190883028	190883028	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaataagtaaagaagaCagtaaaattcttaaaaaggc	6	4	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	190883028	C	T	190883028	2	4	48	1	0	0	0	0	0	0	0	1	6098	477	17	4		4	FRG1	4	190883028	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	20204035	190883028	271248	56	4685											
FRG1	2483	mdanderson.org	37	chr4	190883051	190883051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaattcttaaaaaggctcGgaaagatggatttttgcatg	9	4	1	1	rs75206851		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	190883051	G	A	190883051	3	1	48	1	0	0	0	0	1	0	0	0	6098	1116	39	1	734	1	FRG1	4	190883051	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	23	190883051	271225	57	4686											
PRDM9	56979	mdanderson.org	37	chr5	23527721	23527721	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gggagtgtgggcggggctttCgcaataagtcacacctcctc	14	11	1	0	rs201643800		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	23527721	C	A	23527721	3	1	48	1	0	0	0	0	1	0	0	0	12552	884	31	5	2562	5	PRDM9	5	23527721	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		23527721	157387539	58	4687											
RAI14	26064	mdanderson.org	37	chr5	34824215	34824215	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaataagcaatcttaaggaAcaccttgcaagcaaggaagt	8	7	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	34824215	A	G	34824215	2	3	48	1	0	0	0	0	0	0	0	1	13100	40	2	2		2	RAI14	5	34824215	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	11296494	34824215	146091045	59	4688											
HCN1	348980	hgsc.bcm.edu;bcgsc.ca	37	chr5	45262026	45262026	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgacaatcagcagggatcaTaaatttgaagcaaatcgtgg	10	6	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	45262026	T	A	45262026	3	1	48	1	0	0	0	0	1	0	0	0	7054	1403	49	5	6	5	HCN1	5	45262026	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	10437811	45262026	135653234	60	4689											
BDP1	55814	mdanderson.org	37	chr5	70800538	70800538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaatgattcttttcaaaatGtgcagccagatgagcccaag	8	8	2	3	rs3761967	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	70800538	G	A	70800538	3	1	48	1	0	0	0	0	1	0	0	0	1399	1377	48	4	2394	4	BDP1	5	70800538	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	25538512	70800538	110114722	61	4690											
ZNF366	167465	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	71756876	71756876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaatgggttcctgcttgaCgggcttgcccccaaagtgtt	11	11	0	1	rs74552129	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	71756876	C	T	71756876	3	4	48	1	0	0	0	0	1	0	0	0	17975	536	19	1	1802	1	ZNF366	5	71756876	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	956338	71756876	109158384	62	4691											
PCDHB10	56126	mdanderson.org	37	chr5	140572820	140572820	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctactgtacgcatcgttgTcttggacgtcaatgacaatg	9	10	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	140572820	T	C	140572820	3	2	48	1	0	0	0	0	1	0	0	0	11614	1667	58	2	697	2	PCDHB10	5	140572820	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	68815944	140572820	40342440	63	4692											
ATXN1	6310	mdanderson.org	37	chr6	16327918	16327918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgatgctgatgCtgctgctgctgctgctgctg	14	11	0	2	rs28555263		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	16327918	C	A	16327918	3	1	48	1	0	0	0	0	1	0	0	0	1213	796	28	5	1831	5	ATXN1	6	16327918	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		16327918	154787149	64	4693											
KIAA0319	9856	mdanderson.org	37	chr6	24588884	24588884	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggactcagagggggctgCgctagtgggaggtgttggga	22	5	1	1	rs4504469	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	24588884	C	T	24588884	3	4	48	1	0	0	0	0	1	0	0	0	8229	768	27	1	2359	1	KIAA0319	6	24588884	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	8260966	24588884	146526183	65	4694											
SLC17A4	10050	mdanderson.org	37	chr6	25776845	25776845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggatcctgtctgccttgcCgtttgttgttggatgtatct	12	8	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	25776845	C	T	25776845	3	4	48	1	0	0	0	0	1	0	0	0	14517	652	23	1	1040	1	SLC17A4	6	25776845	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1187961	25776845	145338222	66	4695											
HLA-C	3107	mdanderson.org	37	chr6	31238942	31238942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctctcagctgctccgccGcacgggccgcctccaacttg	11	18	1	0	rs2308590		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	31238942	G	A	31238942	3	1	48	1	0	0	0	0	1	0	0	0	7255	1087	38	1	597	1	HLA-C	6	31238942	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	5462097	31238942	139876125	67	4696			2	45		3	3	602	N	G_CG_C	1.098398e-05
HLA-C	3107	mdanderson.org	37	chr6	31239518	31239518	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcgcccgcggctcccctctCggactcgcggcgtcgctgtc	14	19	1	0	rs1050420	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	31239518	C	T	31239518	2	4	48	1	0	0	0	0	0	0	0	1	7255	871	31	1		1	HLA-C	6	31239518	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	576	31239518	139875549	68	4697			2	45		3	3	602	N	G_CG_C	1.098398e-05
HLA-C	3107	mdanderson.org	37	chr6	31239543	31239544	+	Silent	DNP	CG	CG	TT													tcgcggcgtcgctgtcgaacCgcacgaactgcgtgtcgtcc					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		TT	31239544	CG	TT	31239543	2	4	48	1	0	0	0	0	0	0	0	1	7255	652	23	1		1	HLA-C	6	31239543	Silent	DNP	CG	TCGA-KN-8433-01A-11D-2310-10	25	31239543	139875524	69	4698			2	45		3	3	602	N	G_CG_C	1.098398e-05
RUNX2	860	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	45405707	45405707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagtttcaccttgaccataAccgtcttcacaaatcctccc	4	15	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	45405707	A	G	45405707	3	3	48	1	0	0	0	0	1	0	0	0	13843	43	2	2	634	2	RUNX2	6	45405707	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	14166164	45405707	125709360	70	4699											
ENPP5	59084	mdanderson.org	37	chr6	46133228	46133228	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaatgccacctttctggaAcgtcttcttttttgtaaaca	6	9	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	46133228	A	G	46133228	3	3	48	1	0	0	0	0	1	0	0	0	5172	43	2	2	539	2	ENPP5	6	46133228	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	727521	46133228	124981839	71	4700											
RIMS1	22999	ucsc.edu;mdanderson.org	37	chr6	72974700	72974700	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttgttaggcactataaaAcattacctcccaagatgcct	5	11	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	72974700	A	G	72974700	3	3	48	1	0	0	0	0	1	0	0	0	13462	43	2	2	3380	2	RIMS1	6	72974700	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	26841472	72974700	98140367	72	4701											
HSF2	3298	mdanderson.org	37	chr6	122743949	122743949	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagagtggagagcagaatgAaccagccagagaatccctaa	11	9	1	5	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	122743949	A	G	122743949	3	3	48	1	0	0	0	0	1	0	0	0	7454	246	9	4	951	4	HSF2	6	122743949	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	49769249	122743949	48371118	73	4702											
LPA	4018	mdanderson.org	37	chr6	160952770	160952770	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccgtccaattaattattTctcatcattccctcaatcca	1	15	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	160952770	T	C	160952770	2	2	48	1	0	0	0	0	0	0	0	1	8975	1780	62	4		4	LPA	6	160952770	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	38208821	160952770	10162297	74	4703											
UNC93A	54346	mdanderson.org	37	chr6	167728774	167728774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgccttcgggtacagcaTgtttttgtgcgtgcacgtca	11	10	1	0	rs79485532		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	167728774	T	C	167728774	3	2	48	1	0	0	0	0	1	0	0	0	17102	1464	51	4	1238	4	UNC93A	6	167728774	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	6776004	167728774	3386293	75	4704											
MICALL2	79778	mdanderson.org	37	chr7	1498910	1498910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatattcacgtcgcggTagccctcgcactgctgccgg	12	14	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	1498910	T	C	1498910	3	2	48	1	0	0	0	0	1	0	0	0	9651	1638	57	2	2729	2	MICALL2	7	1498910	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		1498910	157639753	76	4705											
STK31	56164	mdanderson.org	37	chr7	23792342	23792342	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attctttgtttcagcaagagAaggcagctgctgtggatttg	12	6	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	23792342	A	G	23792342	3	3	48	1	0	0	0	0	1	0	0	0	15396	247	9	4	1058	4	STK31	7	23792342	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	22293432	23792342	135346321	77	4706											
ABCA13	154664	mdanderson.org	37	chr7	48314279	48314279	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgcgtacccttaagaaGgcagacatagaccttttagt	9	9	1	3	rs6955212	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	48314279	G	A	48314279	2	1	48	1	0	0	0	0	0	0	0	1	31	991	35	4		4	ABCA13	7	48314279	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	24521937	48314279	110824384	78	4707											
BAZ1B	9031	mdanderson.org	37	chr7	72891458	72891458	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaacacagcaagccgttccTtccacaactctgcagacatc	5	16	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	72891458	T	C	72891458	3	2	48	1	0	0	0	0	1	0	0	0	1334	1609	56	2	2170	2	BAZ1B	7	72891458	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	24577179	72891458	86247205	79	4708											
BAZ1B	9031	mdanderson.org	37	chr7	72892254	72892254	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcgcaattcttctgggagacGagctctatcttcactagaga	9	10	5	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	72892254	G	A	72892254	3	1	48	1	0	0	0	0	1	0	0	0	1334	1058	37	1	2966	1	BAZ1B	7	72892254	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	796	72892254	86246409	80	4709											
CLDN3	1365	broad.mit.edu;mdanderson.org	37	chr7	73184305	73184305	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacgcgccacatgggcaaCgcgcagcacacgatggtgcc	13	15	0	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	73184305	C	T	73184305	2	4	48	1	0	0	0	0	0	0	0	1	3515	523	19	1		1	CLDN3	7	73184305	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	292051	73184305	85954358	81	4710											
C7orf63	79846	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	89937126	89937126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagctggctaataaatcatgGgaagatttcttggctagaac	11	6	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	89937126	G	T	89937126	3	4	48	1	0	0	0	0	1	0	0	0	2432	1241	43	5	2590	5	C7orf63	7	89937126	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	16752821	89937126	69201537	82	4711											
CCDC132	55610	mdanderson.org	37	chr7	92905518	92905518	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcacttcacccaagccatTcacaacaccgtgtttcaagt	5	14	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	92905518	T	C	92905518	2	2	48	1	0	0	0	0	0	0	0	1	2792	1771	62	4		4	CCDC132	7	92905518	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2968392	92905518	66233145	83	4712											
SLC25A13	10165	mdanderson.org	37	chr7	95813628	95813628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttcatagcgtagcacttTcttaaaacagtcaaagctgt	7	10	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	95813628	T	C	95813628	3	2	48	1	0	0	0	0	1	0	0	0	14573	1792	62	4	921	4	SLC25A13	7	95813628	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2908110	95813628	63325035	84	4713											
STAG3	10734	mdanderson.org	37	chr7	99783860	99783860	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggatagctacaagcaagAccaggatgcaggatttctgg	13	8	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	99783860	A	G	99783860	3	3	48	1	0	0	0	0	1	0	0	0	15344	275	10	2	388	2	STAG3	7	99783860	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3970232	99783860	59354803	85	4714											
UBN2	254048	mdanderson.org	37	chr7	138960858	138960858	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagaatgctttttaaggaAagccggagtgttcataatca	9	7	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	138960858	A	G	138960858	2	3	48	1	0	0	0	0	0	0	0	1	16999	11	1	4		4	UBN2	7	138960858	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	39176998	138960858	20177805	86	4715											
TAS2R4	50832	mdanderson.org	37	chr7	141478814	141478814	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcagtgagggcatcttgTctttagtggtttctttggtc	11	6	4	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	141478814	T	C	141478814	3	2	48	1	0	0	0	0	1	0	0	0	15678	1667	58	2	528	2	TAS2R4	7	141478814	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2517956	141478814	17659849	87	4716											
PRSS1	5644	mdanderson.org	37	chr7	142458526	142458526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggtggctccctcatcaAcgaacagtgggtggtatcag	13	10	3	0	rs144422014		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	142458526	A	G	142458526	3	3	48	1	0	0	0	0	1	0	0	0	12703	43	2	2	167	2	PRSS1	7	142458526	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	979712	142458526	16680137	88	4717											
OR2A2	442361	mdanderson.org	37	chr7	143806681	143806681	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgccacaagagcatggaAggcaaccagacatggatcac	10	12	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	143806681	A	G	143806681	2	3	48	1	0	0	0	0	0	0	0	1	11056	69	3	2		2	OR2A2	7	143806681	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1348155	143806681	15331982	89	4718											
CNOT7	29883	mdanderson.org	37	chr8	17088229	17088229	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaaaggactatttcatgTcatgactgcttgttggcttc	8	7	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	17088229	T	C	17088229	3	2	48	1	0	0	0	0	1	0	0	0	3653	1680	58	2	3	2	CNOT7	8	17088229	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		17088229	129275793	90	4719											
ST18	9705	mdanderson.org	37	chr8	53025806	53025806	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatactttccagtagagcTttgcattccggggaatagtc	10	8	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	53025806	T	C	53025806	2	2	48	1	0	0	0	0	0	0	0	1	15312	1606	56	2		2	ST18	8	53025806	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	35937577	53025806	93338216	91	4720											
WWP1	11059	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	87410805	87410805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttgttgttcagtagaAatacaggaaaatggtgatgc	10	5	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	87410805	A	C	87410805	3	2	48	1	0	0	0	0	1	0	0	0	17521	11	1	5	495	5	WWP1	8	87410805	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	34384999	87410805	58953217	92	4721											
CYP11B1	1584	mdanderson.org	37	chr8	143958291	143958291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgctctccaaaaagagcCaagttgctggctgcggggag	14	11	1	1	rs6419	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	143958291	C	T	143958291	2	4	48	1	0	0	0	0	0	0	0	1	4176	593	21	4		4	CYP11B1	8	143958291	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	56547486	143958291	2405731	93	4722											
SCRIB	23513	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	144890886	144890886	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctctacctcctcctcctGaggactaccctcttcctcct	3	21	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	144890886	G	A	144890886	4	1	48	1	0	0	0	0	0	1	0	0	14034	1299	45	4	3051	4	SCRIB	8	144890886	Nonsense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	932595	144890886	1473136	94	4723											
FOXD4	2298	broad.mit.edu	37	chr9	117662	117663	+	Frame_Shift_Ins	INS	-	-	G													gttcagcgagaggttgtggcINSggatgctgttctgccaggcg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	117663	-	G	117662	7	5	48	1	0	1	1	0	0	0	0	0	6048	768	27	0	865	0	FOXD4	9	117662	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10		117662	141095769	95	4724											
AQP7	364	mdanderson.org	37	chr9	33385690	33385690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaatgaaggtgaagatgcGggggggcaggtcccgggacg	20	7	0	3	rs139024279	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	33385690	G	T	33385690	3	4	48	1	0	0	0	0	1	0	0	0	833	1116	39	5	336	5	AQP7	9	33385690	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	33268028	33385690	107827741	96	4725			3	46		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	chr9	33386144	33386144	+	Silent	SNP	G	G	A													gcaaaaatgccagctgtagcGacgggaccggtcaccatcag					rs76209395	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	33386144	G	A	33386144	2	1	48	1	0	0	0	0	0	0	0	1	833	1045	37	1		1	AQP7	9	33386144	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	454	33386144	107827287	97	4726	113	3	3	46		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	chr9	33386146	33386146	+	Missense_Mutation	SNP	C	C	A													aaaaatgccagctgtagcgaCgggaccggtcaccatcagct					rs76608797	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	33386146	C	A	33386146	3	1	48	1	0	0	0	0	1	0	0	0	833	536	19	5	586	5	AQP7	9	33386146	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2	33386146	107827285	98	4727	113	3	3	46		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	chr9	33386152	33386152	+	Missense_Mutation	SNP	C	C	A													gccagctgtagcgacgggacCggtcaccatcagctgtccac					rs144445015	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	33386152	C	A	33386152	3	1	48	1	0	0	0	0	1	0	0	0	833	652	23	5	592	5	AQP7	9	33386152	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	6	33386152	107827279	99	4728	113	3	3	46		5	3	504	N	G_C	7.695331e-06
AQP7	364	mdanderson.org	37	chr9	33386193	33386193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaaaagtggagaatggccGctgcggagacacagactgtc	14	10	0	3	rs199840488		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	33386193	G	A	33386193	3	1	48	1	0	0	0	0	1	0	0	0	833	1101	38	1	633	1	AQP7	9	33386193	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	41	33386193	107827238	100	4729			3	46		5	3	504	N	G_C	7.695331e-06
PRSS3	5646	mdanderson.org	37	chr9	33796672	33796673	+	Missense_Mutation	DNP	TG	TG	CA													tttgacgatgatgacaagatTgttgggggctacacctgtga					rs76740888		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		CA	33796673	TG	CA	33796672	3	2	48	1	0	0	0	0	1	0	0	0	12711	1800	63	4	293	4	PRSS3	9	33796672	Missense_Mutation	DNP	TG	TCGA-KN-8433-01A-11D-2310-10	410479	33796672	107416759	101	4730											
ALDH1B1	219	mdanderson.org;bcgsc.ca	37	chr9	38396065	38396065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggggccggctgctgaaccGcctggcagacctagtggagc	17	13	0	2	rs2073478	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	38396065	G	T	38396065	3	4	48	1	0	0	0	0	1	0	0	0	493	1087	38	5	322	5	ALDH1B1	9	38396065	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	4599393	38396065	102817366	102	4731											
CNTNAP3	79937	mdanderson.org	37	chr9	39140621	39140621	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcttgtgggcttcacaagActgctcgtagagagctgtag	14	8	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	39140621	A	G	39140621	3	3	48	1	0	0	0	0	1	0	0	0	3677	275	10	2	2147	2	CNTNAP3	9	39140621	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	744556	39140621	102072810	103	4732											
C5	727	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	123783821	123783821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtcactccagatgggagaTtaagcacaaaggaagctact	10	10	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	123783821	T	C	123783821	3	2	48	1	0	0	0	0	1	0	0	0	2301	1493	52	4	3886	4	C5	9	123783821	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	84643200	123783821	17429610	104	4733											
SFTPA1	653509	mdanderson.org	37	chr10	81371398	81371398	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccatgccaggtgccagGtgatgctgggaattttcccg	15	10	0	1	rs3997773	byfrequency;by1000genomes	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	81371398	G	A	81371398	5	1	48	1	0	0	0	0	0	0	1	0	14286	1275	44	3	25	3	SFTPA1	10	81371398	Splice_Site	SNP	G	TCGA-KN-8433-01A-11D-2310-10		81371398	54163349	105	4734											
FAM35A	54537	mdanderson.org	37	chr10	88911273	88911273	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatatctgaaggatgaaaaAcagcacaaaaatcttgaaaa	6	5	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	88911273	A	G	88911273	2	3	48	1	0	0	0	0	0	0	0	1	5602	40	2	2		2	FAM35A	10	88911273	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	7539875	88911273	46623474	106	4735											
CHUK	1147	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	101969426	101969426	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctctgaaagaagttcttGagaaccagtatttattccag	8	7	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	101969426	G	A	101969426	4	1	48	1	0	0	0	0	0	1	0	0	3445	1299	45	4	1231	4	CHUK	10	101969426	Nonsense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	13058153	101969426	33565321	107	4736											
SLK	9748	hgsc.bcm.edu	37	chr10	105762029	105762030	+	Frame_Shift_Ins	INS	-	-	A													tattttggagtctgtctcagINSaaaaaacagaacgtagtaac					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	105762030	-	A	105762029	7	5	48	1	0	1	1	0	0	0	0	0	14846	943	33	0	1127	0	SLK	10	105762029	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	3792603	105762029	29772718	108	4737	114	2									
SLK	9748	bcgsc.ca	37	chr10	105762030	105762031	+	Frame_Shift_Ins	INS	-	-	A													attttggagtctgtctcagaINSaaaaacagaacgtagtaact					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	105762031	-	A	105762030	7	5	48	1	0	1	1	0	0	0	0	0	14846	246	9	0	1128	0	SLK	10	105762030	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	1	105762030	29772717	109	4738	114	2									
MUC6	4588	mdanderson.org	37	chr11	1016243	1016243	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacactgatgcagtcgtgggAtgagtggacaatgaggagtg	17	5	0	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	1016243	A	G	1016243	2	3	48	1	0	0	0	0	0	0	0	1	10058	330	12	4		4	MUC6	11	1016243	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10		1016243	133990273	110	4739			4	47		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	chr11	1016604	1016605	+	Missense_Mutation	DNP	AC	AC	GG													ggctggtcccactggtggtcActgtcattggtggggctgtg					rs147913342		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		GG	1016605	AC	GG	1016604	3	3	48	1	0	0	0	0	1	0	0	0	10058	159	6	2	1134	2	MUC6	11	1016604	Missense_Mutation	DNP	AC	TCGA-KN-8433-01A-11D-2310-10	361	1016604	133989912	111	4740			4	47		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	chr11	1016770	1016770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaaggaggtggagaaagGtggaacgtgagtgggaagtg	19	4	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	1016770	G	A	1016770	3	1	48	1	0	0	0	0	1	0	0	0	10058	1261	44	3	1300	3	MUC6	11	1016770	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	166	1016770	133989746	112	4741			4	47		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	chr11	1017088	1017088	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctaaatgagcttggggAttggctggtcccactggtgg	16	8	0	1	rs74990443		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	1017088	A	C	1017088	3	2	48	1	0	0	0	0	1	0	0	0	10058	333	12	5	1618	5	MUC6	11	1017088	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	318	1017088	133989428	113	4742			4	47		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	chr11	1017226	1017226	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggccatctgtgtgtgggTagggatgatgaccgtgtgag	18	5	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	1017226	T	G	1017226	3	3	48	1	0	0	0	0	1	0	0	0	10058	1638	57	5	1756	5	MUC6	11	1017226	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	138	1017226	133989290	114	4743			4	47		6	6	2098	N	T_G_AC_A	9.685436e-12
MUC6	4588	mdanderson.org	37	chr11	1018340	1018340	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtggccttgagcgttgtTggtggaggaatggtacctgt	16	7	0	1	rs77556339		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	1018340	T	C	1018340	2	2	48	1	0	0	0	0	0	0	0	1	10058	1799	63	4		4	MUC6	11	1018340	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1114	1018340	133988176	115	4744			4	47		6	6	2098	N	T_G_AC_A	9.685436e-12
OR51B6	390058	mdanderson.org	37	chr11	5373489	5373489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatcctggtcttctatgTcactgtagtttgtctgacat	8	10	4	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	5373489	T	C	5373489	3	2	48	1	0	0	0	0	1	0	0	0	11171	1667	58	2	754	2	OR51B6	11	5373489	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	4355149	5373489	129633027	116	4745											
TRIM34	53840	mdanderson.org	37	chr11	5662452	5662452	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccaggagtggtgcttgtgAgttataaagaagtgtttgta	15	3	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	5662452	A	G	5662452	3	3	48	1	0	0	0	0	1	0	0	0	16613	304	11	2		2	TRIM34	11	5662452	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	288963	5662452	129344064	117	4746											
RRP8	23378	mdanderson.org	37	chr11	6623149	6623149	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttctggcatttcctcttTcttttctcatcttcagcaga	5	11	6	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	6623149	T	C	6623149	2	2	48	1	0	0	0	0	0	0	0	1	13785	1780	62	4		4	RRP8	11	6623149	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	960697	6623149	128383367	118	4747											
OR2AG2	338755	mdanderson.org	37	chr11	6789972	6789972	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagtgacaacagatgtgaAcaggaggtccatgagagaga	16	5	0	5	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	6789972	A	G	6789972	3	3	48	1	0	0	0	0	1	0	0	0	11064	43	2	2	737	2	OR2AG2	11	6789972	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	166823	6789972	128216544	119	4748											
OR10A2	341276	mdanderson.org	37	chr11	6891395	6891395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actggctgctgcctcctggtTcccaggctttcctgtagcta	10	14	0	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	6891395	T	C	6891395	3	2	48	1	0	0	0	0	1	0	0	0	10969	1783	62	4	412	4	OR10A2	11	6891395	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	101423	6891395	128115121	120	4749											
SBF2	81846	mdanderson.org	37	chr11	9809226	9809226	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtccacggttaccctttcCcacagctgctgccacttctc	7	17	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	9809226	C	T	9809226	4	4	48	1	0	0	0	0	0	1	0	0	13955	624	22	3	577	3	SBF2	11	9809226	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2917831	9809226	125197290	121	4750											
EIF4G2	1982	mdanderson.org	37	chr11	10823662	10823662	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaggcatgatgtgtccCccatggccattgaagagttg	15	8	0	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	10823662	C	T	10823662	2	4	48	1	0	0	0	0	0	0	0	1	5076	610	22	3		3	EIF4G2	11	10823662	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1014436	10823662	124182854	122	4751											
MYBPC3	4607	mdanderson.org	37	chr11	47364266	47364266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accggtatttgaaggtctccTcccgggtcagctccaccccg	10	16	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	47364266	T	C	47364266	3	2	48	1	0	0	0	0	1	0	0	0	10091	1551	54	2	2409	2	MYBPC3	11	47364266	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	36540604	47364266	87642250	123	4752											
OR5L1	219437	mdanderson.org	37	chr11	55579068	55579068	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtcacgttgttagccaaCctgggcatgattgcactgat	12	9	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	55579068	C	T	55579068	2	4	48	1	0	0	0	0	0	0	0	1	11249	506	18	3		3	OR5L1	11	55579068	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	8214802	55579068	79427448	124	4753											
OR8J3	81168	mdanderson.org	37	chr11	55905070	55905070	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagggtgatgatgcccaggTtccctgccatggtcagcaca	13	11	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	55905070	T	C	55905070	3	2	48	1	0	0	0	0	1	0	0	0	11321	1725	60	2	824	2	OR8J3	11	55905070	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	326002	55905070	79101446	125	4754											
AHNAK	79026	mdanderson.org	37	chr11	62293548	62293548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccacatctggaccttctcCtttgaagccaggcatgctga	9	13	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	62293548	C	T	62293548	3	4	48	1	0	0	0	0	1	0	0	0	414	690	24	4	9451	4	AHNAK	11	62293548	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	6388478	62293548	72712968	126	4755											
ZNHIT2	741	mdanderson.org	37	chr11	64884065	64884065	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctagggccaggggtgtgAgggccgcctcattttcgttg	16	9	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	64884065	A	G	64884065	3	3	48	1	0	0	0	0	1	0	0	0	18310	304	11	2	154	2	ZNHIT2	11	64884065	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2590517	64884065	70122451	127	4756											
DYNC2H1	79659	mdanderson.org	37	chr11	103090674	103090674	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaaaacagaacttgaaAgactgaagcacagaatagca	8	7	0	5	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	103090674	A	G	103090674	3	3	48	1	0	0	0	0	1	0	0	0	4883	64	3	2	9085	2	DYNC2H1	11	103090674	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	38206609	103090674	31915842	128	4757											
TAPBPL	55080	broad.mit.edu;mdanderson.org	37	chr12	6567817	6567817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cattctttctccagcttcccCtaaagtacgactgagcttgg	7	13	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	6567817	C	T	6567817	3	4	48	1	0	0	0	0	1	0	0	0	15654	681	24	4	929	4	TAPBPL	12	6567817	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		6567817	127284078	129	4758											
ATN1	1822	mdanderson.org	37	chr12	7045912	7045912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcagcagcagcagcagcagca	13	14	0	0	rs144280633	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	7045912	G	A	7045912	2	1	48	1	0	0	0	0	0	0	0	1	1115	962	34	4		4	ATN1	12	7045912	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	478095	7045912	126805983	130	4759											
PRB2	653247	mdanderson.org	37	chr12	11546764	11546764	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttgttgcctccttgtGggggtggtccttgtggcttt	16	7	0	0	rs201994479		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	11546764	G	T	11546764	3	4	48	1	0	0	0	0	1	0	0	0	12532	1348	47	5	1006	5	PRB2	12	11546764	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	4500852	11546764	122305131	131	4760											
WBP11	51729	mdanderson.org	37	chr12	14940061	14940061	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcatccttagtttgtactgAgacaggaacagaaggaccag	10	8	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	14940061	A	G	14940061	3	3	48	1	0	0	0	0	1	0	0	0	17364	304	11	2	65	2	WBP11	12	14940061	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3393297	14940061	118911834	132	4761											
TMEM117	84216	mdanderson.org	37	chr12	44338122	44338122	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcacatatacaacacgatTcttctaatggatgggaacat	6	9	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	44338122	T	C	44338122	2	2	48	1	0	0	0	0	0	0	0	1	16135	1771	62	4		4	TMEM117	12	44338122	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	29398061	44338122	89513773	133	4762											
ENDOU	8909	mdanderson.org	37	chr12	48104619	48104619	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgtaggctgtggcgatgTacttcttgccattcccatag	10	10	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	48104619	T	C	48104619	3	2	48	1	0	0	0	0	1	0	0	0	5155	1638	57	2	37	2	ENDOU	12	48104619	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3766497	48104619	85747276	134	4763											
ARF3	377	broad.mit.edu	37	chr12	49332755	49332756	+	Frame_Shift_Ins	INS	-	-	C													cttgtttttgagctgattggINSccagccagtccaggccttcg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	49332756	-	C	49332755	7	5	48	1	0	1	1	0	0	0	0	0	847	1203	42	0	28	0	ARF3	12	49332755	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	1228136	49332755	84519140	135	4764											
FIGNL2	401720	mdanderson.org	37	chr12	52215102	52215102	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtccacgcctttgggagTctcccccgacggcacggcga	14	15	1	0	rs303819		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	52215102	T	G	52215102	3	3	48	1	0	0	0	0	1	0	0	0	5942	1667	58	5	869	5	FIGNL2	12	52215102	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2882347	52215102	81636793	136	4765											
KRT80	144501	mdanderson.org	37	chr12	52574312	52574312	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctgctcatagatggtTttcatcaactccacgaagct	6	13	4	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	52574312	T	C	52574312	2	2	48	1	0	0	0	0	0	0	0	1	8555	1838	64	4		4	KRT80	12	52574312	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	359210	52574312	81277583	137	4766											
KRT81	3887	mdanderson.org	37	chr12	52681460	52681460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatctcctccttggtgcggcGcagggtctccccgtgcctga	13	15	2	1	rs4761786	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	52681460	G	A	52681460	3	1	48	1	0	0	0	0	1	0	0	0	8556	1087	38	1	587	1	KRT81	12	52681460	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	107148	52681460	81170435	138	4767											
GRIP1	23426	mdanderson.org	37	chr12	66786508	66786508	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctctcctgccatctgtaAcaaatggatggcttcactca	7	12	4	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	66786508	A	G	66786508	2	3	48	1	0	0	0	0	0	0	0	1	6845	40	2	2		2	GRIP1	12	66786508	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	14105048	66786508	67065387	139	4768											
THAP2	83591	ucsc.edu	37	chr12	72067994	72067994	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttttttaaggtttcctttggAtcctaaaagaagaaaagaat	7	4	0	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	72067994	A	T	72067994	3	4	48	1	0	0	0	0	1	0	0	0	15948	333	12	5	89	5	THAP2	12	72067994	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	5281486	72067994	61783901	140	4769											
ACSS3	79611	mdanderson.org	37	chr12	81503481	81503481	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctataaagaagttctggagCaggtaatatcataaacttta	7	6	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	81503481	C	T	81503481	4	4	48	1	0	0	0	0	0	1	0	0	190	711	25	4	460	4	ACSS3	12	81503481	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	9435487	81503481	52348414	141	4770											
PLXNC1	10154	mdanderson.org	37	chr12	94676121	94676121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttctggacatcgacagtTcctccgtgattcttgaagat	8	10	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	94676121	T	C	94676121	3	2	48	1	0	0	0	0	1	0	0	0	12206	1783	62	4	3913	4	PLXNC1	12	94676121	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	13172640	94676121	39175774	142	4771											
TMEM132B	114795	broad.mit.edu;mdanderson.org	37	chr12	126138173	126138173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacacctttagacatttaCgatcctaaggattattctgt	7	8	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	126138173	C	T	126138173	2	4	48	1	0	0	0	0	0	0	0	1	16150	547	19	1		1	TMEM132B	12	126138173	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	31462052	126138173	7713722	143	4772											
TPTE2	93492	mdanderson.org	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	20056686	T	C	20056686	3	2	48	1	0	0	0	0	1	0	0	0	16536	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		20056686	95113192	144	4773											
FGF9	2254	mdanderson.org	37	chr13	22275358	22275358	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaagagtgtgtattcagAgaacagttcgaagaaaactg	10	7	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	22275358	A	G	22275358	2	3	48	1	0	0	0	0	0	0	0	1	5908	301	11	2		2	FGF9	13	22275358	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2218672	22275358	92894520	145	4774											
PABPC3	5042	mdanderson.org	37	chr13	25671967	25671967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaaactttgactgcctccaGgttggcatctgcccctcctc	9	15	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	25671967	G	T	25671967	3	4	48	1	0	0	0	0	1	0	0	0	11444	1000	35	5	1633	5	PABPC3	13	25671967	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	3396609	25671967	89497911	146	4775											
MAB21L1	4081	mdanderson.org	37	chr13	36050525	36050525	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatctttgagcccagccgtTcttaaagtgaaagactgtcc	8	10	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	36050525	T	C	36050525	1	2	48	0	1	0	0	0	0	0	0	0	9214	1798	62	4		4	MAB21L1	13	36050525	RNA	SNP	T	TCGA-KN-8433-01A-11D-2310-10	10378558	36050525	79119353	147	4776											
OR4N2	390429	mdanderson.org	37	chr14	20296208	20296208	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggagcttctgatggtcTtcaacagtggcctgatgaca	13	8	3	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	20296208	T	C	20296208	3	2	48	1	0	0	0	0	1	0	0	0	11156	1609	56	2	603	2	OR4N2	14	20296208	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		20296208	87053332	148	4777											
SLC7A7	9056	mdanderson.org	37	chr14	23243680	23243680	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatgagctggaagatgtcTtccacgcacaagtagatcaa	9	8	2	3	rs139619724	byfrequency;alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	23243680	T	C	23243680	2	2	48	1	0	0	0	0	0	0	0	1	14801	1606	56	2		2	SLC7A7	14	23243680	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2947472	23243680	84105860	149	4778											
ACIN1	22985	ucsc.edu	37	chr14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgatgctgaacgagaaCgtgaacgtgaccttgatctg	12	8	1	6	rs61741619	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	23548787	C	T	23548787	3	4	48	1	0	0	0	0	1	0	0	0	142	536	19	1	2297	1	ACIN1	14	23548787	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	305107	23548787	83800753	150	4779											
LRFN5	145581	mdanderson.org	37	chr14	42356084	42356084	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgactctatccaggaatAcaataagttttattacacct	4	10	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	42356084	A	G	42356084	3	3	48	1	0	0	0	0	1	0	0	0	9013	391	14	2	258	2	LRFN5	14	42356084	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	18807297	42356084	64993456	151	4780											
SOS2	6655	mdanderson.org	37	chr14	50597336	50597336	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgttgattccagctcagTttcagcaatccgactaaagc	7	12	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	50597336	T	C	50597336	3	2	48	1	0	0	0	0	1	0	0	0	15035	1725	60	2	794	2	SOS2	14	50597336	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	8241252	50597336	56752204	152	4781											
PSMC6	5706	mdanderson.org	37	chr14	53178163	53178163	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggatccactggtttataAcatgtctcatgaggaccctg	11	9	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	53178163	A	G	53178163	3	3	48	1	0	0	0	0	1	0	0	0	12780	43	2	2	426	2	PSMC6	14	53178163	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2580827	53178163	54171377	153	4782											
DAAM1	23002	mdanderson.org	37	chr14	59830429	59830429	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagtttgtgtctgttgtcAgccagttcatcacagtagcc	9	9	4	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	59830429	A	G	59830429	3	3	48	1	0	0	0	0	1	0	0	0	4247	188	7	2	2875	2	DAAM1	14	59830429	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6652266	59830429	47519111	154	4783											
STON2	85439	mdanderson.org	37	chr14	81744579	81744579	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcctggtagatgacaatgAgggaatctctttggcttttg	11	7	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	81744579	A	G	81744579	3	3	48	1	0	0	0	0	1	0	0	0	15418	304	11	2	1647	2	STON2	14	81744579	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	21914150	81744579	25604961	155	4784											
TRIP11	9321	mdanderson.org	37	chr14	92470021	92470021	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagttcgttttcatttacTttgttagtgaaattttcatt	5	4	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	92470021	T	C	92470021	2	2	48	1	0	0	0	0	0	0	0	1	16660	1606	56	2		2	TRIP11	14	92470021	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	10725442	92470021	14879519	156	4785											
DICER1	23405	mdanderson.org	37	chr14	95557673	95557673	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacttcaatatcctcttcTttctcttcatcctcctcaga	3	14	6	1	rs201134588		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	95557673	T	C	95557673	2	2	48	1	0	0	0	0	0	0	0	1	4558	1606	56	2		2	DICER1	14	95557673	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3087652	95557673	11791867	157	4786											
PPP2R5C	5527	mdanderson.org	37	chr14	102252425	102252425	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctaaaataaaagtaccagTctctcagcccatagtgaaga	7	9	2	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	102252425	T	C	102252425	3	2	48	1	0	0	0	0	1	0	0	0	12479	1667	58	2	174	2	PPP2R5C	14	102252425	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	6694752	102252425	5097115	158	4787											
TECPR2	9895	mdanderson.org;bcgsc.ca	37	chr14	102910140	102910140	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcttctgtccggaaggcgAgcagtggaagtgtgacattg	15	8	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	102910140	A	G	102910140	3	3	48	1	0	0	0	0	1	0	0	0	15848	304	11	2	2951	2	TECPR2	14	102910140	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	657715	102910140	4439400	159	4788											
AHNAK2	113146	mdanderson.org	37	chr14	105418149	105418149	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtcagcggaagggggctgAatgctgaggtcagtggtctt	18	6	3	2	rs147978925	by1000genomes	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	105418149	A	T	105418149	2	4	48	1	0	0	0	0	0	0	0	1	415	242	9	5		5	AHNAK2	14	105418149	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2508009	105418149	1931391	160	4789											
ARHGAP11A	9824	broad.mit.edu	37	chr15	32908429	32908430	+	Frame_Shift_Ins	INS	-	-	G													ggaatgtgggatcagaggctINSggtgaggttggccctgttgc					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	32908430	-	G	32908429	7	5	48	1	0	1	1	0	0	0	0	0	865	1580	55	0	19	0	ARHGAP11A	15	32908429	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10		32908429	69622963	161	4790											
CASC5	57082	mdanderson.org	37	chr15	40913801	40913801	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgtctctcaaatatgAgagaggagaaaaatttgcta	8	6	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	40913801	A	G	40913801	3	3	48	1	0	0	0	0	1	0	0	0	2688	296	11	2	1455	2	CASC5	15	40913801	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8005372	40913801	61617591	162	4791											
CKMT1B	1159	broad.mit.edu	37	chr15	43890418	43890419	+	Frame_Shift_Ins	INS	-	-	G													acttatccaagaacgtggctINSgggagttcatgtggaatgag					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	43890419	-	G	43890418	7	5	48	1	0	1	1	0	0	0	0	0	3479	1580	55	0	930	0	CKMT1B	15	43890418	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	2976617	43890418	58640974	163	4792											
CATSPER2	117155	mdanderson.org	37	chr15	43928380	43928380	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataccaatgatccaaggtgaAgagaatgaacactgttacca	8	8	0	4	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	43928380	A	G	43928380	3	3	48	1	0	0	0	0	1	0	0	0	2713	72	3	2	736	2	CATSPER2	15	43928380	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	37962	43928380	58603012	164	4793											
SLC12A1	6557	bcgsc.ca	37	chr15	48512846	48512846	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaatgtggcagtcaccCcaagttcagctgacagagtt	11	10	2	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	48512846	C	A	48512846	3	1	48	1	0	0	0	0	1	0	0	0	14480	623	22	5	442	5	SLC12A1	15	48512846	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	4584466	48512846	54018546	165	4794											
LACTB	114294	mdanderson.org	37	chr15	63419154	63419154	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtctcaccatggttgctcTtgccaaattgtgggaagcag	11	9	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	63419154	T	C	63419154	3	2	48	1	0	0	0	0	1	0	0	0	8659	1609	56	2	531	2	LACTB	15	63419154	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	14906308	63419154	39112238	166	4795											
HERC1	8925	broad.mit.edu	37	chr15	64017642	64017643	+	Frame_Shift_Ins	INS	-	-	A													caattgttctttctagatccINSacaagccatacccaggactg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	64017643	-	A	64017642	7	5	48	1	0	1	1	0	0	0	0	0	7115	581	21	0	11412	0	HERC1	15	64017642	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	598488	64017642	38513750	167	4796											
BBS4	585	mdanderson.org	37	chr15	73009145	73009145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgggaaaacataaagctgCcattgaagtatataatgaag	9	4	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	73009145	C	T	73009145	3	4	48	1	0	0	0	0	1	0	0	0	1343	739	26	3	381	3	BBS4	15	73009145	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	8991503	73009145	29522247	168	4797											
ST20	400410	mdanderson.org	37	chr15	80191332	80191332	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtcagaaaaattaggccggTttcacaatatggagtgtcct	10	7	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	80191332	T	C	80191332	3	2	48	1	0	0	0	0	1	0	0	0	15313	1725	60	2	62	2	ST20	15	80191332	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	7182187	80191332	22340060	169	4798											
CHSY1	22856	mdanderson.org	37	chr15	101717680	101717680	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacatctcagccagctgctgGgtggacccataggtcgatgc	12	13	1	0	rs8024370	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	101717680	G	T	101717680	2	4	48	1	0	0	0	0	0	0	0	1	3441	1219	43	5		5	CHSY1	15	101717680	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	21526348	101717680	813712	170	4799											
VPS35	55737	mdanderson.org	37	chr16	46702912	46702912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaggtggcagtgtgaagCgaatccgctgatttccacca	11	11	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	46702912	C	T	46702912	3	4	48	1	0	0	0	0	1	0	0	0	17309	768	27	1	833	1	VPS35	16	46702912	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10		46702912	43651841	171	4800											
SETD6	79918	mdanderson.org	37	chr16	58549932	58549932	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgcaggccggagagctgTtgttcgtggtgccgcgggcc	19	11	0	1	rs4784046	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	58549932	T	C	58549932	2	2	48	1	0	0	0	0	0	0	0	1	14232	1722	60	2		2	SETD6	16	58549932	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	11847020	58549932	31804821	172	4801											
LCAT	3931	mdanderson.org	37	chr16	67974190	67974190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcagccacatgtaccagcCttcctcaaagtgcaggtctg	9	14	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	67974190	C	T	67974190	3	4	48	1	0	0	0	0	1	0	0	0	8720	681	24	4	386	4	LCAT	16	67974190	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	9424258	67974190	22380563	173	4802											
ATMIN	23300	broad.mit.edu	37	chr16	81078086	81078087	+	Frame_Shift_Ins	INS	-	-	G													aacttagcaccatgaccaccINSgagccagtcttggagtcact					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	81078087	-	G	81078086	7	5	48	1	0	1	1	0	0	0	0	0	1114	639	23	0	1997	0	ATMIN	16	81078086	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	13103896	81078086	9276667	174	4803											
ZZEF1	23140	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	3917706	3917706	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtcggtcttgctggaagTcactgctgctggacatggct	14	9	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	3917706	T	A	3917706	3	1	48	1	0	0	0	0	1	0	0	0	18356	1667	58	5	660	5	ZZEF1	17	3917706	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		3917706	77277504	175	4804											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7579699	7579699	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccaacccttgtccttaCcagaacgttgttttcaggaa	7	13	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	7579699	C	A	7579699	5	1	48	1	0	0	0	0	0	0	1	0	16486	521	18	5	1209	5	TP53	17	7579699	Splice_Site	SNP	C	TCGA-KN-8433-01A-11D-2310-10	3661993	7579699	73615511	176	4805											
TBC1D26	353149	mdanderson.org	37	chr17	15642054	15642054	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatgaaggagaagggcaAgaggtcctccagaatcatcc	13	9	2	4	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	15642054	A	G	15642054	3	3	48	1	0	0	0	0	1	0	0	0	15717	72	3	2	429	2	TBC1D26	17	15642054	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8062355	15642054	65553156	177	4806											
CCDC144NL	339184	mdanderson.org	37	chr17	20769996	20769996	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgactcctccttctcctcCttcagcctggcttggagcag	10	16	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	20769996	C	A	20769996	4	1	48	1	0	0	0	0	0	1	0	0	2804	690	24	5	237	5	CCDC144NL	17	20769996	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	5127942	20769996	60425214	178	4807											
KRTAP4-8	728224	mdanderson.org	37	chr17	39254124	39254124	+	Silent	SNP	C	C	G													tggggcttgcagcagctggaCacacagcagctggggcgaca					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	39254124	C	G	39254124	2	3	48	1	0	0	0	0	0	0	0	1	8618	465	17	5		5	KRTAP4-8	17	39254124	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	18484128	39254124	41941086	179	4808	115	2									
KRTAP4-8	728224	mdanderson.org	37	chr17	39254127	39254127	+	Silent	SNP	A	A	G													ggcttgcagcagctggacacAcagcagctggggcgacagca					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	39254127	A	G	39254127	2	3	48	1	0	0	0	0	0	0	0	1	8618	157	6	2		2	KRTAP4-8	17	39254127	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3	39254127	41941083	180	4809	115	2									
ITGB4	3691	mdanderson.org	37	chr17	73752787	73752787	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctctactgcccccaggcTccgccttcactttgagcact	6	18	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	73752787	T	C	73752787	3	2	48	1	0	0	0	0	1	0	0	0	7958	1551	54	2	5205	2	ITGB4	17	73752787	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	34498660	73752787	7442423	181	4810											
DNAH17	8632	mdanderson.org	37	chr17	76547619	76547619	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctgccccttgcttacctTcatagcctgggaaattcctt	7	14	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	76547619	T	C	76547619	3	2	48	1	0	0	0	0	1	0	0	0	4638	1792	62	4	11263	4	DNAH17	17	76547619	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	2794832	76547619	4647591	182	4811											
KCTD1	284252	hgsc.bcm.edu	37	chr18	24127106	24127106	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagcttggtgccaatgccCgcgatgctgttgagcgtggc	14	13	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	24127106	C	T	24127106	2	4	48	1	0	0	0	0	0	0	0	1	8157	639	23	1		1	KCTD1	18	24127106	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10		24127106	53950142	183	4812											
HCN2	610	mdanderson.org	37	chr19	605093	605093	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctatgacctggccagcgcGgtgatgaggatctgcaatct	12	11	2	3	rs55839339	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	605093	G	A	605093	2	1	48	1	0	0	0	0	0	0	0	1	7055	1103	39	1		1	HCN2	19	605093	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10		605093	58523890	184	4813											
PLIN4	729359	mdanderson.org	37	chr19	4512514	4512514	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gactttgtagtgtccaggccGccctggacggcccctttggc	13	14	0	0	rs7259625	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	4512514	G	C	4512514	2	2	48	1	0	0	0	0	0	0	0	1	12172	1074	38	5		5	PLIN4	19	4512514	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	3907421	4512514	54616469	185	4814											
MUC16	94025	mdanderson.org	37	chr19	9002597	9002597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagtacagccgctctctgtCcagtccagggcttttggggt	12	13	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	9002597	C	T	9002597	3	4	48	1	0	0	0	0	1	0	0	0	10051	855	30	3	3440	3	MUC16	19	9002597	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	4490083	9002597	50126386	186	4815											
MUC16	94025	mdanderson.org	37	chr19	9012816	9012816	+	Silent	SNP	G	G	A													gtggtgttgaacttcctggaGcctgggtgatgcatgtcctc					rs4992695	alternate_allele	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	9012816	G	A	9012816	2	1	48	1	0	0	0	0	0	0	0	1	10051	958	34	4		4	MUC16	19	9012816	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	10219	9012816	50116167	187	4816	116	2									
MUC16	94025	mdanderson.org	37	chr19	9012819	9012819	+	Silent	SNP	T	T	A													gtgttgaacttcctggagccTgggtgatgcatgtcctcctc					rs4992694	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	9012819	T	A	9012819	2	1	48	1	0	0	0	0	0	0	0	1	10051	1567	55	5		5	MUC16	19	9012819	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3	9012819	50116164	188	4817	116	2									
PRDX2	7001	mdanderson.org	37	chr19	12911040	12911040	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgccgtaatcctcagacaAgcgtctggtcacgtcagcaa	9	14	4	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	12911040	A	G	12911040	3	3	48	1	0	0	0	0	1	0	0	0	12554	69	3	2	277	2	PRDX2	19	12911040	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3898221	12911040	46217943	189	4818											
RNASEH2A	10535	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	12917591	12917591	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgtcctgggcgtcgatgAggcgggcaggggccccgtgc	19	12	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	12917591	A	T	12917591	3	4	48	1	0	0	0	0	1	0	0	0	13507	304	11	5	106	5	RNASEH2A	19	12917591	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6551	12917591	46211392	190	4819											
CACNA1A	773	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	13397774	13397774	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagggaccccggagccctgGttctctctgaggaaggcaag	14	12	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	13397774	G	T	13397774	3	4	48	1	0	0	0	0	1	0	0	0	2563	1252	44	5	4638	5	CACNA1A	19	13397774	Missense_Mutation	SNP	G	TCGA-KN-8433-01A-11D-2310-10	480183	13397774	45731209	191	4820											
C19orf44	84167	mdanderson.org	37	chr19	16611835	16611835	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagtggacccaggcttgccTcatgtagaccgcccaccact	11	15	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	16611835	T	C	16611835	3	2	48	1	0	0	0	0	1	0	0	0	1945	1551	54	2	234	2	C19orf44	19	16611835	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	3214061	16611835	42517148	192	4821											
MYO9B	4650	hgsc.bcm.edu	37	chr19	17294679	17294680	+	Splice_Site	INS	-	-	A													aagcagatcattccaaaggtINSaaaaaaaaaaacacaccccg					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	17294680	-	A	17294679	8	5	48	1	0	1	1	0	0	0	1	0	10163	1652	57	0	2433	0	MYO9B	19	17294679	Splice_Site	INS	-	TCGA-KN-8433-01A-11D-2310-10	682844	17294679	41834304	193	4822											
ZNF493	284443	mdanderson.org	37	chr19	21606001	21606001	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaacatactggaaagaaAcctttcaaatgtaaaaaatg	5	6	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	21606001	A	G	21606001	2	3	48	1	0	0	0	0	0	0	0	1	18049	40	2	2		2	ZNF493	19	21606001	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4311322	21606001	37522982	194	4823											
ZNF208	7757	mdanderson.org	37	chr19	22155691	22155691	+	Silent	SNP	A	A	G													ttgtagggtttctctccagtAtgaattctcttatgttccat					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	22155691	A	G	22155691	2	3	48	1	0	0	0	0	0	0	0	1	17871	446	16	4		4	ZNF208	19	22155691	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	549690	22155691	36973292	195	4824	117	2									
ZNF208	7757	mdanderson.org	37	chr19	22155696	22155696	+	Missense_Mutation	SNP	T	T	C													gggtttctctccagtatgaaTtctcttatgttccataaggt					rs201427226		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	22155696	T	C	22155696	3	2	48	1	0	0	0	0	1	0	0	0	17871	1493	52	4	1706	4	ZNF208	19	22155696	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	5	22155696	36973287	196	4825	117	2									
ZNF208	7757	mdanderson.org	37	chr19	22155715	22155715	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attctcttatgttccataagGtttgaggaccagttgaaagc	9	7	1	2	rs201994264		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	22155715	G	A	22155715	2	1	48	1	0	0	0	0	0	0	0	1	17871	1252	44	3		3	ZNF208	19	22155715	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	19	22155715	36973268	197	4826											
ZNF676	163223	mdanderson.org	37	chr19	22363172	22363172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccacattcttcacatttGtagggtttctctccagcatg	7	11	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	22363172	G	A	22363172	2	1	48	1	0	0	0	0	0	0	0	1	18188	1372	48	4		4	ZNF676	19	22363172	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	207457	22363172	36765811	198	4827											
ZNF536	9745	mdanderson.org	37	chr19	30936335	30936335	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgagtataacctgcagggTcctgggaacatgaaggagaa	13	8	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	30936335	T	C	30936335	2	2	48	1	0	0	0	0	0	0	0	1	18079	1654	58	2		2	ZNF536	19	30936335	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	8573163	30936335	28192648	199	4828											
KIAA0355	9710	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	34818401	34818401	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaacaactcttttgttctCaaagtgcagcaattcctgag	6	10	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	34818401	C	T	34818401	4	4	48	1	0	0	0	0	0	1	0	0	8231	827	29	4	791	4	KIAA0355	19	34818401	Nonsense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	3882066	34818401	24310582	200	4829											
COX7A1	1346	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	36642385	36642385	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagacacagcgtcattgTcactcggtacaggatgttgt	11	11	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	36642385	T	C	36642385	3	2	48	1	0	0	0	0	1	0	0	0	3808	1667	58	2	81	2	COX7A1	19	36642385	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1823984	36642385	22486598	201	4830											
MRPS12	6183	broad.mit.edu	37	chr19	39421914	39421914	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtctcttatcccctaccacAgggacggcccaggtggcagg	12	14	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	39421914	A	G	39421914	5	3	48	1	0	0	0	0	0	0	1	0	9901	202	7	2		2	MRPS12	19	39421914	Splice_Site	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2779529	39421914	19707069	202	4831											
SNRPA	6626	mdanderson.org	37	chr19	41269564	41269564	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccaacgagctcatgctgTccatgcttttcaatcagtaa	7	11	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	41269564	T	C	41269564	3	2	48	1	0	0	0	0	1	0	0	0	14957	1667	58	2	691	2	SNRPA	19	41269564	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1847650	41269564	17859419	203	4832											
PVRL2	5819	mdanderson.org	37	chr19	45391603	45391603	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgattcctaccagggcaaAggctttgtcatgtcccgggc	11	12	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	45391603	A	G	45391603	2	3	48	1	0	0	0	0	0	0	0	1	12932	69	3	2		2	PVRL2	19	45391603	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	4122039	45391603	13737380	204	4833											
LILRB3	11025	mdanderson.org	37	chr19	54725992	54725992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggctgagagggtgggtttGctgtaggctcctaggagaga	19	5	0	2	rs148339740	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	54725992	G	A	54725992	2	1	48	1	0	0	0	0	0	0	0	1	8855	1310	46	4		4	LILRB3	19	54725992	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	9334389	54725992	4402991	205	4834											
LILRB2	10288	mdanderson.org	37	chr19	54778570	54778570	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggtggcgtagatgctgggCtcagctggaggttccctttc	16	9	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	54778570	C	T	54778570	2	4	48	1	0	0	0	0	0	0	0	1	8854	796	28	4		4	LILRB2	19	54778570	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	52578	54778570	4350413	206	4835											
LILRB1	10859	mdanderson.org	37	chr19	55148076	55148076	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacaaaggacagacaggcGgaagaggacaggcagatgga	16	7	0	3	rs62133433	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	55148076	G	A	55148076	2	1	48	1	0	0	0	0	0	0	0	1	8853	1103	39	1		1	LILRB1	19	55148076	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	369506	55148076	3980907	207	4836											
LILRB4	11006	mdanderson.org	37	chr19	55179145	55179145	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaaggtgaaacactccagAcctaggagagaaatggcctc	11	11	0	3	rs61738946	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	55179145	A	T	55179145	3	4	48	1	0	0	0	0	1	0	0	0	8856	272	10	5	1143	5	LILRB4	19	55179145	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	31069	55179145	3949838	208	4837											
ZSCAN5A	79149	mdanderson.org	37	chr19	56734014	56734014	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcctgggttctcttcccTgttttccttcagatccttct	6	14	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	56734014	T	C	56734014	3	2	48	1	0	0	0	0	1	0	0	0	18339	1579	55	2	813	2	ZSCAN5A	19	56734014	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	1554869	56734014	2394969	209	4838											
ZNF17	7565	mdanderson.org	37	chr19	57931172	57931172	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctggctgagcatgacggAacacaccccaagcgtacagc	10	15	0	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	57931172	A	G	57931172	2	3	48	1	0	0	0	0	0	0	0	1	17848	233	9	4		4	ZNF17	19	57931172	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1197158	57931172	1197811	210	4839											
POFUT1	23509	mdanderson.org	37	chr20	30804433	30804433	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaacccctttggcccaTtctgggatcagtttcatgtg	10	10	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	30804433	T	C	30804433	3	2	48	1	0	0	0	0	1	0	0	0	12263	1493	52	4	465	4	POFUT1	20	30804433	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		30804433	32221087	211	4840											
SLA2	84174	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr20	35262937	35262937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgagtctcagcgacagctcGgccgggccacctgccgggaa	14	16	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	35262937	G	A	35262937	2	1	48	1	0	0	0	0	0	0	0	1	14462	1103	39	1		1	SLA2	20	35262937	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	4458504	35262937	27762583	212	4841											
ZNF334	55713	mdanderson.org	37	chr20	45131515	45131515	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctttctgttttctttgcTtttctttgcaacaattactt	3	8	4	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	45131515	T	C	45131515	3	2	48	1	0	0	0	0	1	0	0	0	17956	1609	56	2	1583	2	ZNF334	20	45131515	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	9868578	45131515	17894005	213	4842											
PFDN4	5203	mdanderson.org	37	chr20	52830988	52830988	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagctgaaggaagaaatagaAgtaaaaaaggtattgaaaat	11	1	0	4	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	52830988	A	G	52830988	2	3	48	1	0	0	0	0	0	0	0	1	11837	69	3	2		2	PFDN4	20	52830988	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	7699473	52830988	10194532	214	4843											
UCKL1	54963	broad.mit.edu	37	chr20	62576011	62576011	+	Frame_Shift_Del	DEL	T	T	-													cctcgatgtcccggccgcgcTcactgatgtcccggcgcagc					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		-	62576011	T	-	62576011	7	5	48	1	0	1	0	1	0	0	0	0	17031	1551	54	0	955	0	UCKL1	20	62576011	Frame_Shift_Del	DEL	T	TCGA-KN-8433-01A-11D-2310-10	9745023	62576011	449509	215	4844											
NRIP1	8204	mdanderson.org	37	chr21	16338989	16338989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttctacattttcttcatTcttatggccaagtagcaatt	4	8	4	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	16338989	T	C	16338989	3	2	48	1	0	0	0	0	1	0	0	0	10731	1783	62	4	1955	4	NRIP1	21	16338989	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10		16338989	31790906	216	4845											
TMPRSS15	5651	mdanderson.org	37	chr21	19726118	19726118	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcagattctataagaaAggtggcagtaacttggttgg	11	5	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	19726118	A	G	19726118	3	3	48	1	0	0	0	0	1	0	0	0	16350	72	3	2	2184	2	TMPRSS15	21	19726118	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3387129	19726118	28403777	217	4846											
SON	6651	mdanderson.org	37	chr21	34924913	34924913	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgatcgttcaatgatgTctatggctgctgattcttac	9	9	3	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	34924913	T	C	34924913	3	2	48	1	0	0	0	0	1	0	0	0	15024	1667	58	2	3386	2	SON	21	34924913	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	15198795	34924913	13204982	218	4847											
RFPL1	5988	mdanderson.org	37	chr22	29837976	29837976	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctatacattcaggagtgtCtctgctgaggagccactgca	11	10	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	29837976	C	A	29837976	2	1	48	1	0	0	0	0	0	0	0	1	13345	900	32	5		5	RFPL1	22	29837976	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10		29837976	21466590	219	4848											
SGSM3	27352	mdanderson.org	37	chr22	40802191	40802191	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctacgagggctcccgggtGctgttccagctcacgctggg	14	13	2	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	40802191	G	T	40802191	2	4	48	1	0	0	0	0	0	0	0	1	14321	1306	46	5		5	SGSM3	22	40802191	Silent	SNP	G	TCGA-KN-8433-01A-11D-2310-10	10964215	40802191	10502375	220	4849											
CYP2D6	1565	mdanderson.org	37	chr22	42525176	42525176	+	Missense_Mutation	SNP	C	C	A													ccacgcgggcccatagcgcgCcaggaacacccctgggggtg					rs1135823		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		A	42525176	C	A	42525176	3	1	48	1	0	0	0	0	1	0	0	0	4200	739	26	5	1157	5	CYP2D6	22	42525176	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	1722985	42525176	8779390	221	4850	118	2									
CYP2D6	1565	mdanderson.org	37	chr22	42525182	42525182	+	Missense_Mutation	SNP	A	A	T													gggcccatagcgcgccaggaAcacccctgggggtgggacgg					rs1135822		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	42525182	A	T	42525182	3	4	48	1	0	0	0	0	1	0	0	0	4200	43	2	5	1163	5	CYP2D6	22	42525182	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	6	42525182	8779384	222	4851	118	2									
RRP7A	27341	mdanderson.org	37	chr22	42910784	42910784	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcgtagtcactgatccaCtctgaggaaaagggagccag	12	10	3	2	rs2142829	bycluster;byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	42910784	C	T	42910784	2	4	48	1	0	0	0	0	0	0	0	1	13784	579	20	4		4	RRP7A	22	42910784	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	385602	42910784	8393782	223	4852											
NLGN4X	57502	mdanderson.org	37	chrX	5810997	5810997	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttggcgtcataagtgggAtgtcatctggcgaccggcgc	15	9	3	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	5810997	A	G	5810997	3	3	48	1	0	0	0	0	1	0	0	0	10543	333	12	4	142	4	NLGN4X	23	5810997	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10		5810997	149459563	224	4853											
TLR7	51284	mdanderson.org	37	chrX	12905178	12905178	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgattttcagcatctttcTttcctcaaatgcctgaatct	4	11	6	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	12905178	T	C	12905178	2	2	48	1	0	0	0	0	0	0	0	1	16060	1596	56	2		2	TLR7	23	12905178	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	7094181	12905178	142365382	225	4854											
FAM9C	171484	mdanderson.org	37	chrX	13061295	13061295	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctctttccccatgctcaTcagttacatctccctccttt	2	17	4	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	13061295	T	C	13061295	3	2	48	1	0	0	0	0	1	0	0	0	5710	1435	50	4	386	4	FAM9C	23	13061295	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	156117	13061295	142209265	226	4855											
MBTPS2	51360	broad.mit.edu	37	chrX	21896681	21896681	+	Frame_Shift_Del	DEL	A	A	-													gcagaaccaataaagactgtAaaaaaagctcaagttcaagt					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		-	21896681	A	-	21896681	7	5	48	1	0	1	0	1	0	0	0	0	9439	363	13	0	1166	0	MBTPS2	23	21896681	Frame_Shift_Del	DEL	A	TCGA-KN-8433-01A-11D-2310-10	8835386	21896681	133373879	227	4856											
CXorf22	170063	mdanderson.org	37	chrX	35974129	35974129	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacaggcacaggacttcctgTtttactacagtttgatccag	9	10	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	35974129	T	C	35974129	3	2	48	1	0	0	0	0	1	0	0	0	4133	1725	60	2	1256	2	CXorf22	23	35974129	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	14077448	35974129	119296431	228	4857											
SYTL5	94122	broad.mit.edu	37	chrX	37932872	37932873	+	Frame_Shift_Ins	INS	-	-	C													agtacagagccaagagcaaaINScccgccaggatgcagaaaag					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	37932873	-	C	37932872	7	5	48	1	0	1	1	0	0	0	0	0	15587	43	2	0	489	0	SYTL5	23	37932872	Frame_Shift_Ins	INS	-	TCGA-KN-8433-01A-11D-2310-10	1958743	37932872	117337688	229	4858											
SLC9A7	84679	mdanderson.org	37	chrX	46529082	46529082	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attgctccaaaaaagagacaAtctgtgtagtaaaatttatc	6	6	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	46529082	A	G	46529082	2	3	48	1	0	0	0	0	0	0	0	1	14817	98	4	4		4	SLC9A7	23	46529082	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	8596210	46529082	108741478	230	4859											
ZNF81	347344	mdanderson.org	37	chrX	47774692	47774692	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaagcaatgcagcaaagaAcctggataaaactattgggc	9	7	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	47774692	A	G	47774692	3	3	48	1	0	0	0	0	1	0	0	0	18277	43	2	2	661	2	ZNF81	23	47774692	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1245610	47774692	107495868	231	4860											
ZNF81	347344	mdanderson.org	37	chrX	47774819	47774819	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaagtcctcagcctcaaAcactcactcagtcaaaatgt	6	12	5	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	47774819	A	G	47774819	2	3	48	1	0	0	0	0	0	0	0	1	18277	40	2	2		2	ZNF81	23	47774819	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	127	47774819	107495741	232	4861											
GPR173	54328	mdanderson.org	37	chrX	53106925	53106925	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaccctactgtgtcatgtgAagcaggctggtaggcagaca	13	9	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	53106925	A	G	53106925	3	3	48	1	0	0	0	0	1	0	0	0	6728	259	9	4	1124	4	GPR173	23	53106925	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	5332106	53106925	102163635	233	4862											
HSD17B10	3028	mdanderson.org	37	chrX	53458523	53458523	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctctgggaggctggtcagCagtggggtgccaaacagacc	15	10	2	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	53458523	C	T	53458523	2	4	48	1	0	0	0	0	0	0	0	1	7437	697	25	4		4	HSD17B10	23	53458523	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	351598	53458523	101812037	234	4863											
TRO	7216	mdanderson.org	37	chrX	54955088	54955088	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtaccgcgaggcagtggAgatggaagtccaagctgcag	16	9	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	54955088	A	G	54955088	3	3	48	1	0	0	0	0	1	0	0	0	16679	304	11	2	1973	2	TRO	23	54955088	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1496565	54955088	100315472	235	4864											
ZXDB	158586	mdanderson.org	37	chrX	57620759	57620759	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccaaccaaagcggagtggAacgtacatcctgactctgac	9	13	1	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	57620759	A	G	57620759	3	3	48	1	0	0	0	0	1	0	0	0	18352	246	9	4	2280	4	ZXDB	23	57620759	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	2665671	57620759	97649801	236	4865											
GDPD2	54857	mdanderson.org	37	chrX	69645623	69645623	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcccacagattcctcttcCgccgctggggacactggatg	10	16	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	69645623	C	T	69645623	3	4	48	1	0	0	0	0	1	0	0	0	6380	652	23	1	230	1	GDPD2	23	69645623	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	12024864	69645623	85624937	237	4866											
SLC7A3	84889	mdanderson.org	37	chrX	70147758	70147758	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctgaagctggtagtaAggcatcatcagggtgagtgc	15	7	3	2	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	70147758	A	G	70147758	2	3	48	1	0	0	0	0	0	0	0	1	14796	59	3	2		2	SLC7A3	23	70147758	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	502135	70147758	85122802	238	4867											
HDX	139324	mdanderson.org	37	chrX	83616516	83616516	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaattcagttgccacagcTtcaattttctctctacaaac	3	11	4	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	83616516	T	C	83616516	2	2	48	1	0	0	0	0	0	0	0	1	7084	1606	56	2		2	HDX	23	83616516	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	13468758	83616516	71654044	239	4868											
HNRNPH2	3188	mdanderson.org	37	chrX	100668187	100668187	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagggatgggcttatccaAccagtctagttatggaggtc	15	7	1	0	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	100668187	A	G	100668187	3	3	48	1	0	0	0	0	1	0	0	0	7325	43	2	2	1213	2	HNRNPH2	23	100668187	Missense_Mutation	SNP	A	TCGA-KN-8433-01A-11D-2310-10	17051671	100668187	54602373	240	4869											
TCEAL2	140597	mdanderson.org	37	chrX	101382406	101382406	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaatttacaggaccccTtctatcctaggggtccaagg	9	10	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	101382406	T	C	101382406	3	2	48	1	0	0	0	0	1	0	0	0	15775	1609	56	2	606	2	TCEAL2	23	101382406	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	714219	101382406	53888154	241	4870											
KLHL13	90293	mdanderson.org	37	chrX	117053557	117053557	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactggcagcttccagcgtgTcttgaaggttgtccatatta	10	9	1	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	117053557	T	C	117053557	3	2	48	1	0	0	0	0	1	0	0	0	8430	1667	58	2	1486	2	KLHL13	23	117053557	Missense_Mutation	SNP	T	TCGA-KN-8433-01A-11D-2310-10	15671151	117053557	38217003	242	4871											
GLUD2	2747	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	120182071	120182071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcagtggttgatgtgcCgtttgggggtgctaaagctg	18	5	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	120182071	C	T	120182071	3	4	48	1	0	0	0	0	1	0	0	0	6533	652	23	1	535	1	GLUD2	23	120182071	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	3128514	120182071	35088489	243	4872											
GPR112	139378	mdanderson.org	37	chrX	135494443	135494443	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattcttcatttttgtgttTcactgtgtgatgaaggagag	12	4	3	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		C	135494443	T	C	135494443	2	2	48	1	0	0	0	0	0	0	0	1	6686	1780	62	4		4	GPR112	23	135494443	Silent	SNP	T	TCGA-KN-8433-01A-11D-2310-10	15312372	135494443	19776117	244	4873											
MCF2	4168	mdanderson.org	37	chrX	138695406	138695406	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttacatgcttgaaagaaAgagtatccaactcccactgc	7	10	0	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	138695406	A	G	138695406	2	3	48	1	0	0	0	0	0	0	0	1	9455	59	3	2		2	MCF2	23	138695406	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	3200963	138695406	16575154	245	4874											
MAGEC1	9947	mdanderson.org	37	chrX	140993912	140993912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gattcctgtgagcccctcctCctcctccactttactgagtc	6	17	0	2	rs12558365	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	140993912	C	T	140993912	3	4	48	1	0	0	0	0	1	0	0	0	9257	855	30	3	728	3	MAGEC1	23	140993912	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2298506	140993912	14276648	246	4875											
MAGEC1	9947	mdanderson.org	37	chrX	140994381	140994381	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agttcccctgagagaactcaCagtacttttgagggttttcc	9	10	1	3	rs76145360	byfrequency	TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	140994381	C	G	140994381	3	3	48	1	0	0	0	0	1	0	0	0	9257	477	17	5	1197	5	MAGEC1	23	140994381	Missense_Mutation	SNP	C	TCGA-KN-8433-01A-11D-2310-10	469	140994381	14276179	247	4876											
SLITRK4	139065	mdanderson.org	37	chrX	142716870	142716870	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatagtttgtggaatgaaAgcttctgtgctcagtccatc	9	8	3	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	142716870	A	G	142716870	2	3	48	1	0	0	0	0	0	0	0	1	14843	59	3	2		2	SLITRK4	23	142716870	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	1722489	142716870	12553690	248	4877											
PRRG3	79057	broad.mit.edu	37	chrX	150869347	150869348	+	Frame_Shift_Del	DEL	CT	CT	-													gcaccctctacctccctgagCtctctctctccagactgtcc					novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		-	150869348	CT	-	150869347	7	5	48	1	0	1	0	1	0	0	0	0	12696	797	28	0	548	0	PRRG3	23	150869347	Frame_Shift_Del	DEL	CT	TCGA-KN-8433-01A-11D-2310-10	8152477	150869347	4401213	249	4878											
FLNA	2316	mdanderson.org	37	chrX	153578045	153578045	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggccttgaaggggctgccCccaatgtggtaggggccgcc	16	12	0	1	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		T	153578045	C	T	153578045	2	4	48	1	0	0	0	0	0	0	0	1	5982	610	22	3		3	FLNA	23	153578045	Silent	SNP	C	TCGA-KN-8433-01A-11D-2310-10	2708698	153578045	1692515	250	4879											
F8	2157	mdanderson.org	37	chrX	154132764	154132764	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgttagtgtggcagaccagAaggggtccaatcaggcctga	15	8	1	3	novel		TCGA-KN-8433-01A-11D-2310-10	TCGA-KN-8433-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b6e97d6b-3b11-4cee-a4a9-2b59d6e88a3d	f16bdd65-b3fd-46c9-b27f-ad59ee5a9916		G	154132764	A	G	154132764	2	3	48	1	0	0	0	0	0	0	0	1	5390	233	9	4		4	F8	23	154132764	Silent	SNP	A	TCGA-KN-8433-01A-11D-2310-10	554719	154132764	1137796	251	4880											
PEX10	5192	ucsc.edu	37	chr1	2341848	2341848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagtaggccacatctgagAgcagctcaacctccttcctc	7	15	2	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	2341848	A	G	2341848	3	3	49	1	0	0	0	0	1	0	0	0	11816	304	11	2	905	2	PEX10	1	2341848	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10		2341848	246908773	1	4881											
GSTM5	2949	mdanderson.org	37	chr1	110256127	110256127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccctacttgattgatgggGctcacaagatcacccagagc	10	12	2	4	rs75824084	bycluster	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	110256127	G	A	110256127	3	1	49	1	0	0	0	0	1	0	0	0	6899	1203	42	3	213	3	GSTM5	1	110256127	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	107914279	110256127	138994494	2	4882											
ADORA3	140	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	112029261	112029261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccttgcagcttctggttttGttgcctgataggtctgaatc	11	9	2	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	112029261	G	T	112029261	3	4	49	1	0	0	0	0	1	0	0	0	329	1368	48	5	236	5	ADORA3	1	112029261	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	1773134	112029261	137221360	3	4883											
BIRC6	57448	mdanderson.org	37	chr2	32641045	32641045	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgagagagaaaaaacgtctGacatttctactcttggacac	8	8	3	3	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	32641045	G	A	32641045	3	1	49	1	0	0	0	0	1	0	0	0	1443	1290	45	4	2724	4	BIRC6	2	32641045	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		32641045	210558328	4	4884											
TBC1D5	9779	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	17413592	17413592	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atatatctgtggtgcaatttCtagtctgttcaagtgcatgt	9	6	4	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	17413592	C	T	17413592	3	4	49	1	0	0	0	0	1	0	0	0	15727	922	32	4	1527	4	TBC1D5	3	17413592	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10		17413592	180608838	5	4885											
SLC26A6	65010	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	48669762	48669762	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctcattgatcatggagtcGttcaaggcctgcggggccag	14	10	3	1	rs146756914		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	48669762	G	A	48669762	2	1	49	1	0	0	0	0	0	0	0	1	14619	1136	40	1		1	SLC26A6	3	48669762	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	31256170	48669762	149352668	6	4886											
SPCS1	28972	mdanderson.org	37	chr3	52740182	52740182	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgcgcagtgccagaccttaCccctcacggtccttaagtct	8	16	2	1	rs6617	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	52740182	C	G	52740182	3	3	49	1	0	0	0	0	1	0	0	0	15123	507	18	5	123	5	SPCS1	3	52740182	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	4070420	52740182	145282248	7	4887											
MASP1	5648	broad.mit.edu	37	chr3	186978580	186978581	+	Frame_Shift_Ins	INS	-	-	G													tagccgaagcggcaggagcaINSgtagtagccgccaatgtagt					novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	186978581	-	G	186978580	7	5	49	1	0	1	1	0	0	0	0	0	9399	188	7	0	2600	0	MASP1	3	186978580	Frame_Shift_Ins	INS	-	TCGA-KN-8434-01A-11D-2310-10	134238398	186978580	11043850	8	4888											
MUC4	4585	mdanderson.org	37	chr3	195513203	195513203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggatgctgaggaagCgtcagtgacaagaagagggc	16	7	1	4	rs77879173		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	195513203	C	T	195513203	3	4	49	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195513203	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	8534623	195513203	2509227	9	4889											
SENP5	205564	broad.mit.edu;hgsc.bcm.edu	37	chr3	196613140	196613142	+	In_Frame_Del	DEL	CTC	CTC	-													ggaccagtcatcctgttcttCtcctaagtgggagtgtacag					novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		-	196613142	CTC	-	196613140	7	5	49	1	0	1	0	1	0	0	0	0	14146	913	32	0	1090	0	SENP5	3	196613140	In_Frame_Del	DEL	CTC	TCGA-KN-8434-01A-11D-2310-10	1099937	196613140	1409290	10	4890	119	2									
SENP5	205564	bcgsc.ca	37	chr3	196613141	196613143	+	In_Frame_Del	DEL	CTC	CTC	-													gaccagtcatcctgttcttcTcctaagtgggagtgtacaga					novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		-	196613143	CTC	-	196613141	7	5	49	1	0	1	0	1	0	0	0	0	14146	1538	54	0	1091	0	SENP5	3	196613141	In_Frame_Del	DEL	CTC	TCGA-KN-8434-01A-11D-2310-10	1	196613141	1409289	11	4891	119	2									
NAP1L5	266812	mdanderson.org	37	chr4	89618837	89618837	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttccgccattacctcctcTgccgctgcctccgccgctgc	7	22	1	0	rs710834	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	89618837	T	C	89618837	2	2	49	1	0	0	0	0	0	0	0	1	10238	1567	55	2		2	NAP1L5	4	89618837	Silent	SNP	T	TCGA-KN-8434-01A-11D-2310-10		89618837	101535439	12	4892											
DDX60	55601	broad.mit.edu	37	chr4	169196590	169196590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatgtattgcagttggaacCgagctggcccaatgccaact	10	12	0	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	169196590	C	T	169196590	3	4	49	1	0	0	0	0	1	0	0	0	4410	652	23	1	3020	1	DDX60	4	169196590	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	79577753	169196590	21957686	13	4893											
SPINK5	11005	broad.mit.edu	37	chr5	147499644	147499644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgagaaagtgaccctgtcCggggtccagatggcaagaca	13	11	0	4	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	147499644	C	T	147499644	3	4	49	1	0	0	0	0	1	0	0	0	15162	643	23	1	2484	1	SPINK5	5	147499644	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10		147499644	33415616	14	4894											
GABRA1	2554	ucsc.edu	37	chr5	161324123	161324123	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctttctacagccaaagAaagtaaaggatcctcttatt	5	9	3	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	161324123	A	G	161324123	3	3	49	1	0	0	0	0	1	0	0	0	6212	247	9	4	1100	4	GABRA1	5	161324123	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	13824479	161324123	19591137	15	4895											
FOXI1	2299	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr5	169533097	169533097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcgtgcccagccctcagCggccctccttcgaggggggc	16	16	1	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	169533097	C	T	169533097	3	4	49	1	0	0	0	0	1	0	0	0	6060	759	27	1	138	1	FOXI1	5	169533097	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	8208974	169533097	11382163	16	4896											
DST	667	hgsc.bcm.edu	37	chr6	56335065	56335065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caactgcgctcatctccaagCgactggttggaaactctaaa	8	12	3	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	56335065	C	T	56335065	3	4	49	1	0	0	0	0	1	0	0	0	4820	768	27	1	1079	1	DST	6	56335065	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10		56335065	114780002	17	4897											
HINT3	135114	ucsc.edu	37	chr6	126288134	126288134	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgcagaactctaaggaaAgatcaagtagaactgggtaa	10	6	2	3	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	126288134	A	G	126288134	2	3	49	1	0	0	0	0	0	0	0	1	7171	69	3	2		2	HINT3	6	126288134	Silent	SNP	A	TCGA-KN-8434-01A-11D-2310-10	69953069	126288134	44826933	18	4898											
RAET1G	353091	mdanderson.org	37	chr6	150240697	150240697	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaaacttacccttgggtAtgtaattctccagctgaatg	8	9	2	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	150240697	A	G	150240697	3	3	49	1	0	0	0	0	1	0	0	0	13092	449	16	4	679	4	RAET1G	6	150240697	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	23952563	150240697	20874370	19	4899											
AUTS2	26053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr7	70231281	70231281	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acgccgttcccccacgccatCccacccaccgccatcatgcc	5	24	1	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	70231281	C	T	70231281	2	4	49	1	0	0	0	0	0	0	0	1	1229	845	30	3		3	AUTS2	7	70231281	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10		70231281	88907382	20	4900											
PCLO	27445	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	82544701	82544701	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgaataggtgaaaattttgAcattttagggtcaattagtg	10	2	1	3	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	82544701	A	T	82544701	3	4	49	1	0	0	0	0	1	0	0	0	11662	275	10	5	2920	5	PCLO	7	82544701	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	12313420	82544701	76593962	21	4901											
SLC26A5	375611	bcgsc.ca	37	chr7	103038430	103038430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatgattctttcaagttaAacccagctgaaatgccagtt	7	8	2	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	103038430	A	G	103038430	3	3	49	1	0	0	0	0	1	0	0	0	14618	14	1	4	1403	4	SLC26A5	7	103038430	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	20493729	103038430	56100233	22	4902											
CHRM2	1129	broad.mit.edu	37	chr7	136699614	136699614	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actgattagagaacgcaaaaTgaataactcaacaaactcct	5	9	1	3	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	136699614	T	A	136699614	3	1	49	1	0	0	0	0	1	0	0	0	3406	1464	51	5	4	5	CHRM2	7	136699614	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10	33661184	136699614	22439049	23	4903											
ZYX	7791	hgsc.bcm.edu	37	chr7	143078856	143078856	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgggtgggcgagattccCccgccgcccccggaaggtat	16	15	0	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	143078856	C	T	143078856	2	4	49	1	0	0	0	0	0	0	0	1	18355	610	22	3		3	ZYX	7	143078856	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10	6379242	143078856	16059807	24	4904											
C9orf131	138724	hgsc.bcm.edu;ucsc.edu	37	chr9	35044753	35044753	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacttgtgtggagaaatgtGcaacaaagagaagttcccca	11	7	0	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	35044753	G	A	35044753	2	1	49	1	0	0	0	0	0	0	0	1	2482	1306	46	4		4	C9orf131	9	35044753	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		35044753	106168678	25	4905											
PRUNE2	158471	broad.mit.edu	37	chr9	79320843	79320843	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgaggtgcttctcagtcTcttgctttgcttcagaatcg	9	11	3	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	79320843	T	C	79320843	3	2	49	1	0	0	0	0	1	0	0	0	12730	1551	54	2	2967	2	PRUNE2	9	79320843	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10	44276090	79320843	61892588	26	4906											
TMEFF1	8577	mdanderson.org	37	chr9	103235853	103235853	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcagccgctgaggcgccGctccggctgcctgccgcgcc	15	20	0	1	rs77849433		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	103235853	G	T	103235853	2	4	49	1	0	0	0	0	0	0	0	1	16117	1074	38	5		5	TMEFF1	9	103235853	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	23915010	103235853	37977578	27	4907											
TBC1D13	54662	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	131565713	131565713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccctctactacacctttgCcaccgaccccaatagtgagt	6	17	1	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	131565713	C	T	131565713	3	4	49	1	0	0	0	0	1	0	0	0	15703	739	26	3	758	3	TBC1D13	9	131565713	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	28329860	131565713	9647718	28	4908											
VENTX	27287	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	135051543	135051543	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcctgccgacttctcccTggggagcctccctggcccag	12	18	1	0	rs2240892	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	135051543	T	C	135051543	3	2	49	1	0	0	0	0	1	0	0	0	17259	1580	55	2	127	2	VENTX	10	135051543	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		135051543	483204	29	4909											
MUC6	4588	broad.mit.edu	37	chr11	1018714	1018714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcttgctggggttggacGtgggcctgtcgtctgggtgg	21	7	1	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	1018714	G	A	1018714	3	1	49	1	0	0	0	0	1	0	0	0	10058	1145	40	1	3244	1	MUC6	11	1018714	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		1018714	133987802	30	4910											
MRGPRE	116534	mdanderson.org	37	chr11	3249552	3249552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaactgggtgcaggcgcCgctgagcagcaggtgcagca	17	10	0	2	rs4391795	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	3249552	C	T	3249552	3	4	49	1	0	0	0	0	1	0	0	0	9842	652	23	1	464	1	MRGPRE	11	3249552	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	2230838	3249552	131756964	31	4911											
CDC42BPG	55561	hgsc.bcm.edu;ucsc.edu	37	chr11	64600192	64600192	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aacacgcgctgccagccccgCcggacacctgagggccgcgg	14	18	0	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	64600192	C	A	64600192	2	1	49	1	0	0	0	0	0	0	0	1	3103	726	26	5		5	CDC42BPG	11	64600192	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10	61350640	64600192	70406324	32	4912											
SIPA1	6494	hgsc.bcm.edu	37	chr11	65414344	65414344	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgccctgcctgctgggcatCtcggccgaggctctggtgct	15	14	2	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	65414344	C	G	65414344	3	3	49	1	0	0	0	0	1	0	0	0	14426	903	32	5	1865	5	SIPA1	11	65414344	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	814152	65414344	69592172	33	4913											
RIN1	9610	mdanderson.org	37	chr11	66102088	66102088	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcagctcctggggctcGggcccagcccgcacctgggt	14	18	0	0	rs3814740	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	66102088	G	A	66102088	2	1	49	1	0	0	0	0	0	0	0	1	13466	1103	39	1		1	RIN1	11	66102088	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	687744	66102088	68904428	34	4914											
ABCG4	64137	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr11	119024755	119024755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttataagacccttctcaaGtgcctctcaggtaaattctg	8	10	3	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	119024755	G	A	119024755	2	1	49	1	0	0	0	0	0	0	0	1	70	1020	36	4		4	ABCG4	11	119024755	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	52922667	119024755	15981761	35	4915											
TAS2R43	259289	mdanderson.org	37	chr12	11244603	11244603	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcttacttctacactatTaaaagctggattcaacacag	5	9	3	0	rs200999522	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	11244603	T	A	11244603	3	1	49	1	0	0	0	0	1	0	0	0	15682	1754	61	5	707	5	TAS2R43	12	11244603	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		11244603	122607292	36	4916											
PPP1R1A	5502	hgsc.bcm.edu	37	chr12	54982196	54982196	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgctccgcacctgctccGccgcctcggggtcaaggtgc	12	19	1	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	54982196	G	A	54982196	3	1	49	1	0	0	0	0	1	0	0	0	12452	1087	38	1	466	1	PPP1R1A	12	54982196	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	43737593	54982196	78869699	37	4917											
PABPC3	5042	mdanderson.org	37	chr13	25670851	25670851	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcaaagtatttgttggacAatttaagtctcgtaaagaac	8	6	1	1	rs75475407		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	25670851	A	G	25670851	3	3	49	1	0	0	0	0	1	0	0	0	11444	130	5	4	517	4	PABPC3	13	25670851	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10		25670851	89499027	38	4918											
CLN5	1203	mdanderson.org	37	chr13	77566090	77566090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggggaggtgtcatgCgccggaacctgcgcttgggg	21	10	1	0	rs77416795		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	77566090	C	T	77566090	3	4	49	1	0	0	0	0	1	0	0	0	3573	768	27	1	6	1	CLN5	13	77566090	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	51895239	77566090	37603788	39	4919											
DOCK9	23348	broad.mit.edu	37	chr13	99476685	99476685	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcctgcatccccacgtcTtccatcatggaggcctcctc	6	18	2	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	99476685	T	C	99476685	2	2	49	1	0	0	0	0	0	0	0	1	4731	1606	56	2		2	DOCK9	13	99476685	Silent	SNP	T	TCGA-KN-8434-01A-11D-2310-10	21910595	99476685	15693193	40	4920											
KCNH5	27133	broad.mit.edu	37	chr14	63316516	63316516	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtatcggttggtgttggcaTacatttgctggaaaattgtt	13	4	0	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	63316516	T	C	63316516	3	2	49	1	0	0	0	0	1	0	0	0	8096	1406	49	4	1592	4	KCNH5	14	63316516	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		63316516	44033024	41	4921											
MESDC1	59274	mdanderson.org	37	chr15	81294774	81294774	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gctgacctgctgctgctgtcGagcgaggcgcggcccgtgct	16	14	0	1	rs11541231	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	81294774	G	C	81294774	2	2	49	1	0	0	0	0	0	0	0	1	9557	1045	37	5		5	MESDC1	15	81294774	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		81294774	21236618	42	4922											
PKD1	5310	hgsc.bcm.edu	37	chr16	2139968	2139968	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttgagtcggtcaaactgGgtgagcagggcctcgaacac	15	9	1	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	2139968	G	A	2139968	2	1	49	1	0	0	0	0	0	0	0	1	12043	1219	43	3		3	PKD1	16	2139968	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		2139968	88214785	43	4923											
NTN3	4917	bcgsc.ca	37	chr16	2523296	2523296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatccctggacccactgaggAcagcagccctgtgcagcccc	10	17	0	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	2523296	A	G	2523296	3	3	49	1	0	0	0	0	1	0	0	0	10780	275	10	2	1309	2	NTN3	16	2523296	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	383328	2523296	87831457	44	4924											
XYLT1	64131	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	17235168	17235168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccgccgatctcccaggcGccacatgtgagcgtcgcact	11	16	1	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	17235168	G	A	17235168	3	1	49	1	0	0	0	0	1	0	0	0	17569	1087	38	1	1474	1	XYLT1	16	17235168	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	14711872	17235168	73119585	45	4925											
ARMC5	79798	broad.mit.edu	37	chr16	31471187	31471189	+	In_Frame_Del	DEL	GTC	GTC	-													ggccccgccccctccgctgtGtcgtcgtctagtcctacgcc					novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		-	31471189	GTC	-	31471187	7	5	49	1	0	1	0	1	0	0	0	0	958	1364	48	0	344	0	ARMC5	16	31471187	In_Frame_Del	DEL	GTC	TCGA-KN-8434-01A-11D-2310-10	14236019	31471187	58883566	46	4926											
POLR2A	5430	broad.mit.edu	37	chr17	7404959	7404959	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcccgagacaagactggcTcctctgctcagaaatccctg	9	14	2	3	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	7404959	T	C	7404959	3	2	49	1	0	0	0	0	1	0	0	0	12294	1551	54	2	2314	2	POLR2A	17	7404959	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		7404959	73790251	47	4927											
FXR2	9513	bcgsc.ca	37	chr17	7506235	7506235	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaataaactcaccagaatgaAgagctcactgtttgtgatgt	9	7	2	4	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	7506235	A	G	7506235	3	3	49	1	0	0	0	0	1	0	0	0	6168	72	3	2	1434	2	FXR2	17	7506235	Missense_Mutation	SNP	A	TCGA-KN-8434-01A-11D-2310-10	101276	7506235	73688975	48	4928											
SHBG	6462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7534020	7534020	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcctcctcctttgaggttCgaacctgggacccagaggga	11	14	0	2	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	7534020	C	T	7534020	4	4	49	1	0	0	0	0	0	1	0	0	14367	876	31	1	236	1	SHBG	17	7534020	Nonsense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	27785	7534020	73661190	49	4929											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7578507	7578507	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaacccacagctgcacaggGcaggtcttggccagttggca	12	13	2	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	7578507	G	C	7578507	3	2	49	1	0	0	0	0	1	0	0	0	16486	1195	42	5	875	5	TP53	17	7578507	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	44487	7578507	73616703	50	4930											
DNAH9	1770	ucsc.edu	37	chr17	11865498	11865498	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgacgaagaagaacagagaAgagtttaggagtcctcctcg	12	7	0	5	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	11865498	A	G	11865498	2	3	49	1	0	0	0	0	0	0	0	1	4645	69	3	2		2	DNAH9	17	11865498	Silent	SNP	A	TCGA-KN-8434-01A-11D-2310-10	4286991	11865498	69329712	51	4931											
NLE1	54475	mdanderson.org	37	chr17	33469279	33469279	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatccacgcacacccaccgGcactgctgccgccatcctgc	7	22	0	0	rs1471615	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	33469279	G	C	33469279	3	2	49	1	0	0	0	0	1	0	0	0	10539	1203	42	5	1493	5	NLE1	17	33469279	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	21603781	33469279	47725931	52	4932											
KRTAP4-11	653240	hgsc.bcm.edu	37	chr17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgcagcagctggacaCacagcagctggggcgacagt	16	12	0	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	39274432	C	T	39274432	3	4	49	1	0	0	0	0	1	0	0	0	8611	478	17	4	455	4	KRTAP4-11	17	39274432	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	5805153	39274432	41920778	53	4933											
LPIN2	9663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	2937725	2937725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagtctactttagctgccGgtttggattctgagggcgcc	14	10	2	1	rs146067222		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	2937725	G	A	2937725	3	1	49	1	0	0	0	0	1	0	0	0	8991	1116	39	1	1613	1	LPIN2	18	2937725	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		2937725	75139523	54	4934											
SBNO2	22904	hgsc.bcm.edu;mdanderson.org	37	chr19	1108866	1108866	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccatgacggcggcgatgcgGccccacacgcgcagcagcgc	15	17	0	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	1108866	G	A	1108866	2	1	49	1	0	0	0	0	0	0	0	1	13959	1190	42	3		3	SBNO2	19	1108866	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10		1108866	58020117	55	4935											
DOT1L	84444	mdanderson.org	37	chr19	2226676	2226676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagggcgagggcagccgcGgcaaggaggcaggggagggc	23	8	0	1	rs3815308		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	2226676	G	A	2226676	3	1	49	1	0	0	0	0	1	0	0	0	4746	1116	39	1	4262	1	DOT1L	19	2226676	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	1117810	2226676	56902307	56	4936											
RAVER1	125950	mdanderson.org	37	chr19	10431799	10431799	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcggagccccacaggggcGgggggaggagtgagctgggc	21	11	0	1	rs281425	byfrequency	TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	10431799	G	T	10431799	2	4	49	1	0	0	0	0	0	0	0	1	13186	1103	39	5		5	RAVER1	19	10431799	Silent	SNP	G	TCGA-KN-8434-01A-11D-2310-10	8205123	10431799	48697184	57	4937											
CC2D1A	54862	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	14024412	14024412	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccttctgccaccgccccaGcctcatctccaggcttggct	8	19	3	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	14024412	G	C	14024412	3	2	49	1	0	0	0	0	1	0	0	0	2751	971	34	5	731	5	CC2D1A	19	14024412	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	3592613	14024412	45104571	58	4938											
GLTSCR1	29998	mdanderson.org	37	chr19	48183114	48183114	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtgccacggcggccacActgggcctggcgcccatcca	16	16	0	0	rs2914438		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	48183114	A	G	48183114	2	3	49	1	0	0	0	0	0	0	0	1	6530	146	6	2		2	GLTSCR1	19	48183114	Silent	SNP	A	TCGA-KN-8434-01A-11D-2310-10	34158702	48183114	10945869	59	4939											
RBCK1	10616	broad.mit.edu	37	chr20	400073	400074	+	Frame_Shift_Ins	INS	-	-	G													ccggggtcccccaggaacccINSggacgggggcagccagatgc					novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	400074	-	G	400073	7	5	49	1	0	1	1	0	0	0	0	0	13199	639	23	0	580	0	RBCK1	20	400073	Frame_Shift_Ins	INS	-	TCGA-KN-8434-01A-11D-2310-10		400073	62625447	60	4940											
RIPK4	54101	ucsc.edu	37	chr21	43187089	43187089	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagtggacatggcgcaccTtgtacacctgcccgaagccg	11	15	0	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	43187089	T	C	43187089	3	2	49	1	0	0	0	0	1	0	0	0	13478	1609	56	2	2273	2	RIPK4	21	43187089	Missense_Mutation	SNP	T	TCGA-KN-8434-01A-11D-2310-10		43187089	4942806	61	4941											
MN1	4330	broad.mit.edu	37	chr22	28193289	28193289	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggggagggagtttgggCgagccggtcaccaggggact	19	10	1	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	28193289	C	T	28193289	2	4	49	1	0	0	0	0	0	0	0	1	9751	755	27	1		1	MN1	22	28193289	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10		28193289	23111277	62	4942											
RHBDD3	25807	broad.mit.edu	37	chr22	29661514	29661515	+	Frame_Shift_Ins	INS	-	-	C													gggccaggaccaggccggggINSccggcccccaccagccacag					novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		C	29661515	-	C	29661514	7	5	49	1	0	1	1	0	0	0	0	0	13411	1190	42	0	1078	0	RHBDD3	22	29661514	Frame_Shift_Ins	INS	-	TCGA-KN-8434-01A-11D-2310-10	1468225	29661514	21643052	63	4943											
DMD	1756	broad.mit.edu	37	chrX	31645807	31645807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacttgccattgtttcatcaGctcttttactcccttggagt	6	11	3	0	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		T	31645807	G	T	31645807	3	4	49	1	0	0	0	0	1	0	0	0	4617	962	34	5	3105	5	DMD	23	31645807	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10		31645807	123624753	64	4944											
TBC1D25	4943	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	48418349	48418349	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atggaccatgagggccatgcCtttgtttgcttttgtggcat	12	8	0	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	48418349	C	A	48418349	2	1	49	1	0	0	0	0	0	0	0	1	15716	668	24	5		5	TBC1D25	23	48418349	Silent	SNP	C	TCGA-KN-8434-01A-11D-2310-10	16772542	48418349	106852211	65	4945											
GATA1	2623	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	48652278	48652278	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaaagggaaaaagaaaCggggctccagtctgggaggc	16	7	1	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		G	48652278	C	G	48652278	3	3	49	1	0	0	0	0	1	0	0	0	6307	527	19	5	967	5	GATA1	23	48652278	Missense_Mutation	SNP	C	TCGA-KN-8434-01A-11D-2310-10	233929	48652278	106618282	66	4946											
IGSF1	3547	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	130409464	130409464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccttacctgtgactaggaGttccagggtgttgctaggtt	12	10	0	1	novel		TCGA-KN-8434-01A-11D-2310-10	TCGA-KN-8434-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	24f887e1-ce82-40f3-9674-11102bd076c0	2ba9cc49-f11b-48e0-8af9-90bad2c7cc92		A	130409464	G	A	130409464	3	1	49	1	0	0	0	0	1	0	0	0	7657	1029	36	4	858	4	IGSF1	23	130409464	Missense_Mutation	SNP	G	TCGA-KN-8434-01A-11D-2310-10	81757186	130409464	24861096	67	4947											
ZBTB48	3104	ucsc.edu;bcgsc.ca	37	chr1	6641321	6641321	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagtgcccccaaggcccttaGaggctgaaggtgcccagctg	13	13	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	6641321	G	T	6641321	4	4	50	1	0	0	0	0	0	1	0	0	17654	943	33	5	654	5	ZBTB48	1	6641321	Nonsense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		6641321	242609300	1	4948											
PRAMEF7	441871	mdanderson.org	37	chr1	12980074	12980074	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagagttatgacacccagggTgctctctgctgggggagatt	15	8	1	3	rs61778323		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	12980074	T	A	12980074	2	1	50	1	0	0	0	0	0	0	0	1	12527	1683	59	5		5	PRAMEF7	1	12980074	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	6338753	12980074	236270547	2	4949											
MED8	112950	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr1	43852260	43852260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaccagtcccatcatacCtccactctctgattctcgct	4	18	3	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	43852260	C	T	43852260	3	4	50	1	0	0	0	0	1	0	0	0	9530	695	24	4	432	4	MED8	1	43852260	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	30872186	43852260	205398361	3	4950											
COL11A1	1301	ucsc.edu	37	chr1	103453264	103453264	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtccttcagggccatcTtcccctcttgggccaatttg	10	13	3	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	103453264	T	C	103453264	2	2	50	1	0	0	0	0	0	0	0	1	3696	1606	56	2		2	COL11A1	1	103453264	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	59601004	103453264	145797357	4	4951											
RBM15	64783	broad.mit.edu;hgsc.bcm.edu	37	chr1	110882695	110882713	+	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	-													ggtagcctttgtgaacttccGgcggccagaggacgcgcggg					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	110882713	GGCGGCCAGAGGACGCGCG	-	110882695	7	5	50	1	0	1	0	1	0	0	0	0	13208	1116	39	0	670	0	RBM15	1	110882695	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	TCGA-KN-8435-01A-11D-2310-10	7429431	110882695	138367926	5	4952	120	2									
RBM15	64783	bcgsc.ca	37	chr1	110882696	110882714	+	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	-													gtagcctttgtgaacttccgGcggccagaggacgcgcgggc					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	GGCGGCCAGAGGACGCGCG	GGCGGCCAGAGGACGCGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	110882714	GGCGGCCAGAGGACGCGCG	-	110882696	7	5	50	1	0	1	0	1	0	0	0	0	13208	1190	42	0	671	0	RBM15	1	110882696	Frame_Shift_Del	DEL	GGCGGCCAGAGGACGCGCG	TCGA-KN-8435-01A-11D-2310-10	1	110882696	138367925	6	4953	120	2									
FCRLA	84824	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	161677131	161677131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtggcccagatgctacTgggtaagtaaaatatttgaa	12	6	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	161677131	T	C	161677131	3	2	50	1	0	0	0	0	1	0	0	0	5849	1580	55	2	130	2	FCRLA	1	161677131	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	50794435	161677131	87573490	7	4954											
COL3A1	1281	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	189873717	189873717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccctggtccttgctgtgGtggtgttggagccgctgcca	15	12	0	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	189873717	G	A	189873717	3	1	50	1	0	0	0	0	1	0	0	0	3717	1261	44	3	3783	3	COL3A1	2	189873717	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		189873717	53325656	8	4955											
CYP20A1	57404	bcgsc.ca	37	chr2	204161576	204161576	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttattgaaacaaagtatgAactggtaacatcatcaaggg	10	5	2	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	204161576	A	G	204161576	3	3	50	1	0	0	0	0	1	0	0	0	4183	246	9	4	1384	4	CYP20A1	2	204161576	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	14287859	204161576	39037797	9	4956											
AQP12A	375318	mdanderson.org	37	chr2	241631668	241631668	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctctgcctggcacgctgTtgaagctggcggcacagggg	16	11	1	1	rs4343462	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	241631668	T	C	241631668	2	2	50	1	0	0	0	0	0	0	0	1	826	1722	60	2		2	AQP12A	2	241631668	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	37470092	241631668	1567705	10	4957											
CLASP2	23122	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	33686372	33686372	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcctatttccatccactgAttcttcatcatcgaagcttt	5	12	3	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	33686372	A	T	33686372	3	4	50	1	0	0	0	0	1	0	0	0	3484	333	12	5	3905	5	CLASP2	3	33686372	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10		33686372	164336058	11	4958											
MON1A	84315	broad.mit.edu	37	chr3	49967246	49967246	+	Frame_Shift_Del	DEL	G	G	-													gccgccggtgcaggaagataGctttcgccggcctctcgcgg					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	49967246	G	-	49967246	7	5	50	1	0	1	0	1	0	0	0	0	9776	971	34	0	1908	0	MON1A	3	49967246	Frame_Shift_Del	DEL	G	TCGA-KN-8435-01A-11D-2310-10	16280874	49967246	148055184	12	4959											
ABHD10	55347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	111710501	111710501	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgaatgagggaaaaagCagacattcaacttcttgttt	8	8	3	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	111710501	C	A	111710501	3	1	50	1	0	0	0	0	1	0	0	0	74	710	25	5	872	5	ABHD10	3	111710501	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	61743255	111710501	86311929	13	4960											
CCRL1	51554	broad.mit.edu	37	chr3	132320028	132320029	+	Frame_Shift_Ins	INS	-	-	G													taacattgtcaagttctgccINSgagccatagacatcatctac					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	132320029	-	G	132320028	7	5	50	1	0	1	1	0	0	0	0	0	2978	644	23	0	789	0	CCRL1	3	132320028	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	20609527	132320028	65702402	14	4961											
C3orf33	285315	bcgsc.ca	37	chr3	155485327	155485327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaagatagcaaaagagtgCtgaattctcctttccaagaa	8	8	1	5	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	155485327	C	T	155485327	3	4	50	1	0	0	0	0	1	0	0	0	2243	797	28	4	438	4	C3orf33	3	155485327	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	23165299	155485327	42537103	15	4962											
MUC4	4585	mdanderson.org	37	chr3	195505791	195505791	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acaggaagaggggtggcgtgAcctgtggatgctgaggaagt	19	5	0	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	195505791	A	T	195505791	2	4	50	1	0	0	0	0	0	0	0	1	10056	262	10	5		5	MUC4	3	195505791	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	40020464	195505791	2516639	16	4963			1	48		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	chr3	195505849	195505849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatGctgaggaagtgtcggtgaca	19	6	0	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	195505849	G	A	195505849	3	1	50	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195505849	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	58	195505849	2516581	17	4964			1	48		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	chr3	195509515	195509515	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgctgaggaagtgtcggtgTcaggaagaggggtggcgtga	20	4	1	3	rs28438604		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	195509515	T	A	195509515	3	1	50	1	0	0	0	0	1	0	0	0	10056	1667	58	5		5	MUC4	3	195509515	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	3666	195509515	2512915	18	4965			1	48		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	chr3	195509585	195509585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagagaggtggcgtgacCtgtggatgctgaggaagtgt	19	4	0	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	195509585	C	T	195509585	3	4	50	1	0	0	0	0	1	0	0	0	10056	681	24	4		4	MUC4	3	195509585	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	70	195509585	2512845	19	4966			1	48		5	5	9309	N	T_G_C_A	1.436802e-08
MUC4	4585	mdanderson.org	37	chr3	195515099	195515099	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagaggggtggTgtgacctgtggatactgagg	20	4	0	4	rs71321848	bycluster	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	195515099	T	C	195515099	3	2	50	1	0	0	0	0	1	0	0	0	10056	1696	59	2		2	MUC4	3	195515099	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	5514	195515099	2507331	20	4967			1	48		5	5	9309	N	T_G_C_A	1.436802e-08
PAK2	5062	mdanderson.org	37	chr3	196530013	196530013	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaacacagtgaagcagaaAtatctgagctttactcctcc	6	12	1	3	rs73205842	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	196530013	A	G	196530013	2	3	50	1	0	0	0	0	0	0	0	1	11480	98	4	4		4	PAK2	3	196530013	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	1014914	196530013	1492417	21	4968											
NAT8L	339983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2065597	2065597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcggatgtctgtggactcaCgtttccgaggcaagggcatc	14	10	2	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	2065597	C	T	2065597	3	4	50	1	0	0	0	0	1	0	0	0	10259	536	19	1	662	1	NAT8L	4	2065597	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		2065597	189088679	22	4969											
SMARCA5	8467	hgsc.bcm.edu	37	chr4	144442709	144442710	+	Frame_Shift_Ins	INS	-	-	A													aaaccagggcgcccacgaatINSaaaaaaagatgagaagcaga					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	144442710	-	A	144442709	7	5	50	1	0	1	1	0	0	0	0	0	14869	1406	49	0	390	0	SMARCA5	4	144442709	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	142377112	144442709	46711567	23	4970	121	2									
SMARCA5	8467	bcgsc.ca	37	chr4	144442710	144442711	+	Frame_Shift_Ins	INS	-	-	A													aaccagggcgcccacgaataINSaaaaaagatgagaagcagaa					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	144442711	-	A	144442710	7	5	50	1	0	1	1	0	0	0	0	0	14869	352	13	0	391	0	SMARCA5	4	144442710	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1	144442710	46711566	24	4971	121	2									
ETFDH	2110	mdanderson.org	37	chr4	159601752	159601752	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccgggataaggacaagagAtgggaaggtaagtaataatt	13	5	0	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	159601752	A	G	159601752	2	3	50	1	0	0	0	0	0	0	0	1	5310	330	12	4		4	ETFDH	4	159601752	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	15159042	159601752	31552524	25	4972											
SLC25A46	91137	broad.mit.edu	37	chr5	110097244	110097244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attggaaacagttttgcaccGccttcacattcaaggaacac	7	11	2	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	110097244	G	A	110097244	3	1	50	1	0	0	0	0	1	0	0	0	14609	1087	38	1	1049	1	SLC25A46	5	110097244	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		110097244	70818016	26	4973											
PCDHA6	56142	mdanderson.org	37	chr5	140208909	140208909	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcgttggtgctggacagTgccctggaccgcgagagcgt	15	11	0	1	rs664837	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	140208909	T	C	140208909	2	2	50	1	0	0	0	0	0	0	0	1	11607	1693	59	2		2	PCDHA6	5	140208909	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	30111665	140208909	40706351	27	4974											
DOCK2	1794	mdanderson.org	37	chr5	169504743	169504743	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgacaggagagtgggccgTcccaggtctatgctgcgctc	15	12	1	1	rs1045168	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	169504743	T	C	169504743	2	2	50	1	0	0	0	0	0	0	0	1	4724	1654	58	2		2	DOCK2	5	169504743	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	29295834	169504743	11410517	28	4975											
DPCR1	135656	broad.mit.edu	37	chr6	30917845	30917845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaatgagaacaccacacCatccccagcagagcctacag	8	16	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	30917845	C	T	30917845	3	4	50	1	0	0	0	0	1	0	0	0	4749	594	21	4	1610	4	DPCR1	6	30917845	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		30917845	140197222	29	4976											
CD109	135228	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr6	74520746	74520746	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctttaaaggctctgtctgAatttgcagccctaatgaata	9	8	2	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	74520746	A	C	74520746	3	2	50	1	0	0	0	0	1	0	0	0	2992	246	9	5	3688	5	CD109	6	74520746	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	43602901	74520746	96594321	30	4977											
RIPPLY2	134701	broad.mit.edu	37	chr6	84567032	84567033	+	Frame_Shift_Ins	INS	-	-	A													gctcttctgaaaaattttccINSaattcaagccacaatttcat					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	84567033	-	A	84567032	7	5	50	1	0	1	1	0	0	0	0	0	13480	594	21	0	325	0	RIPPLY2	6	84567032	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	10046286	84567032	86548035	31	4978											
GJA1	2697	mdanderson.org	37	chr6	121769050	121769050	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactagctgctggacatgaaTtacagccactagccattgtg	9	10	0	1	rs2227883		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	121769050	T	C	121769050	2	2	50	1	0	0	0	0	0	0	0	1	6456	1490	52	4		4	GJA1	6	121769050	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	37202018	121769050	49346017	32	4979											
KIAA1244	57221	bcgsc.ca	37	chr6	138655499	138655499	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacggccgagcaagtgaagaAggtcctttttgaggacgacg	14	9	0	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	138655499	A	G	138655499	3	3	50	1	0	0	0	0	1	0	0	0	8278	72	3	2	5646	2	KIAA1244	6	138655499	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	16886449	138655499	32459568	33	4980											
DAGLB	221955	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	6452490	6452490	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcaagattcttctcttcagAtcttccaagttggtcacact	6	12	5	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	6452490	A	T	6452490	3	4	50	1	0	0	0	0	1	0	0	0	4259	330	12	5	509	5	DAGLB	7	6452490	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10		6452490	152686173	34	4981											
HOXA9	3205	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	27204514	27204514	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgggatcgatggggggcTtgtctccgccgctctcattc	13	12	2	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	27204514	T	C	27204514	3	2	50	1	0	0	0	0	1	0	0	0	7356	1609	56	2	263	2	HOXA9	7	27204514	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	20752024	27204514	131934149	35	4982											
ZHX1	11244	mdanderson.org	37	chr8	124267138	124267138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattgtttccttcttgccTcctctacttcctcgggagtc	7	13	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	124267138	T	C	124267138	3	2	50	1	0	0	0	0	1	0	0	0	17780	1551	54	2	1576	2	ZHX1	8	124267138	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10		124267138	22096884	36	4983											
CBWD6	644019	broad.mit.edu	37	chr9	69256826	69256827	+	Frame_Shift_Ins	INS	-	-	C													gaggcaaccgtttctaagttINSccagccactcttcatagagc					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	69256827	-	C	69256826	7	5	50	1	0	1	1	0	0	0	0	0	2741	1783	62	0	934	0	CBWD6	9	69256826	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		69256826	71956605	37	4984											
WNK2	65268	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	95991992	95991992	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtaggaccggaagctcacCaagctggagcggcagcggtt	15	11	1	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	95991992	C	G	95991992	2	3	50	1	0	0	0	0	0	0	0	1	17484	581	21	5		5	WNK2	9	95991992	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10	26735166	95991992	45221439	38	4985											
STAM	8027	broad.mit.edu	37	chr10	17756602	17756603	+	In_Frame_Ins	INS	-	-	CCC													aggcgccagtatatagtcctINScctcctgccgctactgctgc					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		CCC	17756603	-	CCC	17756602	7	5	50	1	0	1	1	0	0	0	0	0	15348	1538	54	0	1500	0	STAM	10	17756602	In_Frame_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		17756602	117778145	39	4986											
CHAT	1103	ucsc.edu	37	chr10	50827861	50827861	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtctgaggagcagttcAggaagagccaggccattgtg	16	7	2	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	50827861	A	G	50827861	3	3	50	1	0	0	0	0	1	0	0	0	3342	179	7	2	532	2	CHAT	10	50827861	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	33071259	50827861	84706886	40	4987											
JAKMIP3	282973	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	133955457	133955457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggagacggagctgaggttcCggcagctgaccatggagtac	16	9	0	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	133955457	C	T	133955457	3	4	50	1	0	0	0	0	1	0	0	0	8003	643	23	1	1545	1	JAKMIP3	10	133955457	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	83127596	133955457	1579290	41	4988											
MUC6	4588	mdanderson.org	37	chr11	1018314	1018314	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattggtggggctgtgtggGtggaccctgtggccttgagc	18	7	0	1	rs200089063		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	1018314	G	A	1018314	3	1	50	1	0	0	0	0	1	0	0	0	10058	1261	44	3	2844	3	MUC6	11	1018314	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		1018314	133988202	42	4989											
KRTAP5-2	440021	mdanderson.org	37	chr11	1619368	1619368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccccacagccagagccaCagcccccacggccggagcca	10	21	0	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	1619368	C	T	1619368	3	4	50	1	0	0	0	0	1	0	0	0	8623	478	17	4	424	4	KRTAP5-2	11	1619368	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	601054	1619368	133387148	43	4990											
OR6A2	8590	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	6816462	6816462	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaactttgaccatggagaTgccaaaacctccagcccaag	7	12	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	6816462	T	G	6816462	3	3	50	1	0	0	0	0	1	0	0	0	11265	1464	51	5	509	5	OR6A2	11	6816462	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	5197094	6816462	128190054	44	4991											
OR1S1	219959	broad.mit.edu;mdanderson.org	37	chr11	57982414	57982414	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggctatcagcttggatacGtaccttcatacccccatgta	8	12	2	0	rs111386724	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	57982414	G	A	57982414	2	1	50	1	0	0	0	0	0	0	0	1	11051	1132	40	1		1	OR1S1	11	57982414	Silent	SNP	G	TCGA-KN-8435-01A-11D-2310-10	51165952	57982414	77024102	45	4992											
KRTAP5-10	387273	mdanderson.org	37	chr11	71276876	71276876	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcttgtgggggctccaaAgggggctgtggttcctgtgg	19	8	1	0	rs12788123		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	71276876	A	G	71276876	2	3	50	1	0	0	0	0	0	0	0	1	8621	69	3	2		2	KRTAP5-10	11	71276876	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	13294462	71276876	63729640	46	4993											
ATM	472	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	108126988	108126988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgttcacgtcttttggtggGtgtccttggctgctactgtt	13	8	2	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	108126988	G	T	108126988	3	4	50	1	0	0	0	0	1	0	0	0	1113	1261	44	5	2221	5	ATM	11	108126988	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	36850112	108126988	26879528	47	4994											
SIK2	23235	broad.mit.edu	37	chr11	111594331	111594332	+	Frame_Shift_Ins	INS	-	-	C													caagtcagcagctgccccttINSccccgccaggagactccacc					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	111594332	-	C	111594331	7	5	50	1	0	1	1	0	0	0	0	0	14416	1770	62	0	2317	0	SIK2	11	111594331	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	3467343	111594331	23412185	48	4995											
ALG9	79796	mdanderson.org	37	chr11	111657129	111657129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggtgtgttgctaacctcCacttttcttcctgatttgct	7	11	1	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	111657129	C	T	111657129	3	4	50	1	0	0	0	0	1	0	0	0	524	603	21	4	11	4	ALG9	11	111657129	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10	62798	111657129	23349387	49	4996											
KCNA6	3742	mdanderson.org	37	chr12	4920387	4920387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctcttctccagtgccGtctacttcgcagaggctgac	8	15	4	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	4920387	G	A	4920387	3	1	50	1	0	0	0	0	1	0	0	0	8068	1145	40	1	1182	1	KCNA6	12	4920387	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10		4920387	128931508	50	4997											
PRB2	653247	mdanderson.org	37	chr12	11546634	11546634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggaccttgaggctggttGcctccttgtgggggtggtcc	18	9	0	1	rs78796502		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	11546634	G	A	11546634	2	1	50	1	0	0	0	0	0	0	0	1	12532	1306	46	4		4	PRB2	12	11546634	Silent	SNP	G	TCGA-KN-8435-01A-11D-2310-10	6626247	11546634	122305261	51	4998											
LRRK2	120892	hgsc.bcm.edu	37	chr12	40707951	40707951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaatgagcttcctcacGcagttcactttctaaatgaa	6	9	3	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	40707951	G	A	40707951	3	1	50	1	0	0	0	0	1	0	0	0	9105	1087	38	1	4840	1	LRRK2	12	40707951	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	29161317	40707951	93143944	52	4999											
COL2A1	1280	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	48379322	48379322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggatagacttacagaagGgccaactttgccttgaggac	12	8	0	4	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	48379322	G	A	48379322	3	1	50	1	0	0	0	0	1	0	0	0	3716	1232	43	3	2850	3	COL2A1	12	48379322	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	7671371	48379322	85472573	53	5000											
ZCCHC8	55596	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	122958438	122958438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacctcaggctcatccagcGtctgcttttcagatgttttt	8	11	4	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	122958438	G	A	122958438	3	1	50	1	0	0	0	0	1	0	0	0	17699	1145	40	1	397	1	ZCCHC8	12	122958438	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	74579116	122958438	10893457	54	5001											
RTL1	388015	broad.mit.edu	37	chr14	101347140	101347141	+	Frame_Shift_Ins	INS	-	-	C													ccaggcggggatgggcagggINScccgcctgtagatcagggtc					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	101347141	-	C	101347140	7	5	50	1	0	1	1	0	0	0	0	0	13819	1203	42	0	94	0	RTL1	14	101347140	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		101347140	6002400	55	5002											
EIF5	1983	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	103802243	103802243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcagaccagttctatcgcTacaagatgccccgtctgatt	8	12	3	3	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	103802243	T	C	103802243	3	2	50	1	0	0	0	0	1	0	0	0	5079	1522	53	2	48	2	EIF5	14	103802243	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	2455103	103802243	3547297	56	5003											
SLC28A2	9153	broad.mit.edu	37	chr15	45556950	45556951	+	Frame_Shift_Ins	INS	-	-	G													tatactgtatttcagtggctINSgggagagcaggtccaggtat					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	45556951	-	G	45556950	7	5	50	1	0	1	1	0	0	0	0	0	14630	1580	55	0	708	0	SLC28A2	15	45556950	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10		45556950	56974442	57	5004											
ISLR	3671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	74467546	74467546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catctctgactttgcctggaGcgacctgcacaacctcagtg	9	14	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	74467546	G	T	74467546	3	4	50	1	0	0	0	0	1	0	0	0	7919	971	34	5	349	5	ISLR	15	74467546	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	28910596	74467546	28063846	58	5005											
VASN	114990	broad.mit.edu	37	chr16	4431910	4431910	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcctggagcttgactaCgccgactttggctgcccagc	11	15	0	1	rs200909451		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	4431910	C	T	4431910	2	4	50	1	0	0	0	0	0	0	0	1	17233	547	19	1		1	VASN	16	4431910	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10		4431910	85922843	59	5006											
CCDC144NL	339184	mdanderson.org	37	chr17	20768816	20768816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctttgctcatgcagatgaCaatactcttgaaaatggtgg	9	9	2	3	rs75656883		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	20768816	C	T	20768816	3	4	50	1	0	0	0	0	1	0	0	0	2804	478	17	4	91	4	CCDC144NL	17	20768816	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		20768816	60426394	60	5007											
TMIGD1	388364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	28656457	28656457	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcttcctctctggtgtggTtttgaacagcacatatcaga	9	9	3	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	28656457	T	C	28656457	3	2	50	1	0	0	0	0	1	0	0	0	16334	1725	60	2	635	2	TMIGD1	17	28656457	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	7887641	28656457	52538753	61	5008											
C17orf98	388381	ucsc.edu	37	chr17	36997606	36997606	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgtccaagataaagccttTctccagtcgcaggcgacact	8	15	1	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	36997606	T	C	36997606	3	2	50	1	0	0	0	0	1	0	0	0	1910	1792	62	4	439	4	C17orf98	17	36997606	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	8341149	36997606	44197604	62	5009											
KRTAP4-9	100132386	mdanderson.org	37	chr17	39262096	39262096	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcccaactgctgccgcccCagctgcagcatctccagctg	9	19	1	0	rs76327324	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	39262096	C	T	39262096	2	4	50	1	0	0	0	0	0	0	0	1	8619	581	21	4		4	KRTAP4-9	17	39262096	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10	2264490	39262096	41933114	63	5010											
BRCA1	672	broad.mit.edu;mdanderson.org	37	chr17	41244425	41244425	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctacttcattaatattgctTgagctggcttctttaaaaac	5	9	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	41244425	T	C	41244425	2	2	50	1	0	0	0	0	0	0	0	1	1506	1799	63	4		4	BRCA1	17	41244425	Silent	SNP	T	TCGA-KN-8435-01A-11D-2310-10	1982329	41244425	39950785	64	5011											
CDC27	996	mdanderson.org	37	chr17	45214527	45214527	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaccacttaccatgcattaTaatgtctaggattgactctg	6	9	2	1	rs62075618	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	45214527	T	C	45214527	3	2	50	1	0	0	0	0	1	0	0	0	3095	1406	49	4	594	4	CDC27	17	45214527	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	3970102	45214527	35980683	65	5012											
HEATR6	63897	broad.mit.edu	37	chr17	58156293	58156293	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catcttttctacgggcggggGgggtgggtggggtgatccca	19	8	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	58156293	G	C	58156293	5	2	50	1	0	0	0	0	0	0	1	0	7091	1247	43	5		5	HEATR6	17	58156293	Splice_Site	SNP	G	TCGA-KN-8435-01A-11D-2310-10	12941766	58156293	23038917	66	5013											
MUC16	94025	mdanderson.org	37	chr19	9065113	9065113	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacttggaggtgaactggTttcaggttctgcacttgcgt	12	8	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	9065113	T	C	9065113	3	2	50	1	0	0	0	0	1	0	0	0	10051	1725	60	2	21518	2	MUC16	19	9065113	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10		9065113	50063870	67	5014											
OR7A5	26659	mdanderson.org	37	chr19	14938184	14938184	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtctttattcctcagactAtagataaaggggttcagcat	8	7	3	2	rs200531878		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	14938184	A	G	14938184	2	3	50	1	0	0	0	0	0	0	0	1	11295	456	16	4		4	OR7A5	19	14938184	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	5873071	14938184	44190799	68	5015											
OR7A5	26659	mdanderson.org	37	chr19	14938248	14938248	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggctgttgcacttgagTgtgagttgcgggtggcagca	17	7	0	3	rs112284734	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		A	14938248	T	A	14938248	3	1	50	1	0	0	0	0	1	0	0	0	11295	1696	59	5	157	5	OR7A5	19	14938248	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	64	14938248	44190735	69	5016											
CPAMD8	27151	broad.mit.edu;ucsc.edu	37	chr19	17036078	17036078	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttttctgaagatacttcaAgacaaagacgttgggtgcaa	11	6	2	4	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	17036078	A	G	17036078	2	3	50	1	0	0	0	0	0	0	0	1	3824	69	3	2		2	CPAMD8	19	17036078	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	2097830	17036078	42092905	70	5017											
CILP2	148113	broad.mit.edu	37	chr19	19649208	19649208	+	Frame_Shift_Del	DEL	T	T	-													ctgtgtcgtcgctgcgcaccTggcgggggcccgaggtgagg					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	19649208	T	-	19649208	7	5	50	1	0	1	0	1	0	0	0	0	3459	1580	55	0	52	0	CILP2	19	19649208	Frame_Shift_Del	DEL	T	TCGA-KN-8435-01A-11D-2310-10	2613130	19649208	39479775	71	5018											
RELB	5971	broad.mit.edu;bcgsc.ca	37	chr19	45537516	45537516	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	taacagacagctacggcgtgGacaagaagcggaaacggggg	16	8	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	45537516	G	C	45537516	3	2	50	1	0	0	0	0	1	0	0	0	13309	1174	41	5	1252	5	RELB	19	45537516	Missense_Mutation	SNP	G	TCGA-KN-8435-01A-11D-2310-10	25888308	45537516	13591467	72	5019											
ZNF787	126208	broad.mit.edu	37	chr19	56599998	56599998	+	Frame_Shift_Del	DEL	C	C	-													ctgaagccgcggccgcagcgCgggcacacgaagggcttgag					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	56599998	C	-	56599998	7	5	50	1	0	1	0	1	0	0	0	0	18262	755	27	0	612	0	ZNF787	19	56599998	Frame_Shift_Del	DEL	C	TCGA-KN-8435-01A-11D-2310-10	11062482	56599998	2528985	73	5020											
ZNF548	147694	broad.mit.edu	37	chr19	57911165	57911166	+	Frame_Shift_Ins	INS	-	-	TT													aatccacagtgaagagaggcINSttgtgtgctccatgaatgtg					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		TT	57911166	-	TT	57911165	7	5	50	1	0	1	1	0	0	0	0	0	18085	797	28	0	1560	0	ZNF548	19	57911165	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1311167	57911165	1217818	74	5021											
ZNF584	201514	mdanderson.org	37	chr19	58921398	58921398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgggggctccttaatgtgAcccagaagggcctataccgg	14	10	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	58921398	A	G	58921398	3	3	50	1	0	0	0	0	1	0	0	0	18121	275	10	2	115	2	ZNF584	19	58921398	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10	1010233	58921398	207585	75	5022											
PCNA	5111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	5099481	5099481	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttagtgtaatgatatcttCattgccggcgcattttagta	8	8	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	5099481	C	G	5099481	3	3	50	1	0	0	0	0	1	0	0	0	11667	835	29	5	552	5	PCNA	20	5099481	Missense_Mutation	SNP	C	TCGA-KN-8435-01A-11D-2310-10		5099481	57926039	76	5023											
NECAB3	63941	broad.mit.edu;hgsc.bcm.edu	37	chr20	32258501	32258501	+	Frame_Shift_Del	DEL	C	C	-													catactcactcggtgagatgCccatcaatgccgctgaacag					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	32258501	C	-	32258501	7	5	50	1	0	1	0	1	0	0	0	0	10385	726	26	0	978	0	NECAB3	20	32258501	Frame_Shift_Del	DEL	C	TCGA-KN-8435-01A-11D-2310-10	27159020	32258501	30767019	77	5024	122	2									
NECAB3	63941	bcgsc.ca	37	chr20	32258502	32258502	+	Frame_Shift_Del	DEL	C	C	-													atactcactcggtgagatgcCcatcaatgccgctgaacagt					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		-	32258502	C	-	32258502	7	5	50	1	0	1	0	1	0	0	0	0	10385	623	22	0	979	0	NECAB3	20	32258502	Frame_Shift_Del	DEL	C	TCGA-KN-8435-01A-11D-2310-10	1	32258502	30767018	78	5025	122	2									
GGT7	2686	broad.mit.edu	37	chr20	33447370	33447371	+	Frame_Shift_Ins	INS	-	-	G													cgagccaggtagtggcgggcINSggcccgatggcaggaacgtc					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	33447371	-	G	33447370	7	5	50	1	0	1	1	0	0	0	0	0	6420	768	27	0	1134	0	GGT7	20	33447370	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1188868	33447370	29578150	79	5026											
MFNG	4242	broad.mit.edu	37	chr22	37875491	37875491	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctcagaagctgcagcagCgcccttgggttcacatagtt	11	12	2	1	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		T	37875491	C	T	37875491	2	4	50	1	0	0	0	0	0	0	0	1	9602	755	27	1		1	MFNG	22	37875491	Silent	SNP	C	TCGA-KN-8435-01A-11D-2310-10		37875491	13429075	80	5027											
SYNGR1	9145	broad.mit.edu	37	chr22	39777835	39777836	+	Frame_Shift_Ins	INS	-	-	C													tggagcccactgggccggatINScccgccggtatgggcggcac					novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	39777836	-	C	39777835	7	5	50	1	0	1	1	0	0	0	0	0	15549	1432	50	0	835	0	SYNGR1	22	39777835	Frame_Shift_Ins	INS	-	TCGA-KN-8435-01A-11D-2310-10	1902344	39777835	11526731	81	5028											
BRD1	23774	broad.mit.edu;mdanderson.org	37	chr22	50216913	50216913	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttctgggcacacgtcacAtggaatgctgtgtagcagtt	12	10	2	0	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	50216913	A	G	50216913	2	3	50	1	0	0	0	0	0	0	0	1	1509	214	8	4		4	BRD1	22	50216913	Silent	SNP	A	TCGA-KN-8435-01A-11D-2310-10	10439078	50216913	1087653	82	5029											
USP11	8237	mdanderson.org	37	chrX	47092432	47092432	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcgttggctgtagaagagAacggacggcgatggcgacgg	18	8	0	2	novel		TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		G	47092432	A	G	47092432	3	3	50	1	0	0	0	0	1	0	0	0	17148	246	9	4	121	4	USP11	23	47092432	Missense_Mutation	SNP	A	TCGA-KN-8435-01A-11D-2310-10		47092432	108178128	83	5030											
GPR112	139378	mdanderson.org	37	chrX	135431236	135431236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaacaaccaccaattgcTtttcttctaatactagaaag	3	9	2	1	rs5930932	byfrequency	TCGA-KN-8435-01A-11D-2310-10	TCGA-KN-8435-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	715f59dd-a80f-422d-988c-f73f4b987baf	9cf36c04-1d2a-4e2f-902d-857033d208d3		C	135431236	T	C	135431236	3	2	50	1	0	0	0	0	1	0	0	0	6686	1609	56	2	5381	2	GPR112	23	135431236	Missense_Mutation	SNP	T	TCGA-KN-8435-01A-11D-2310-10	88338804	135431236	19839324	84	5031											
ENO1	2023	broad.mit.edu;mdanderson.org	37	chr1	8922983	8922983	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggccaagcgctcagatcGgcaaggggcaccagtcttga	13	12	2	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	8922983	G	A	8922983	4	1	51	1	0	0	0	0	0	1	0	0	5160	1124	39	1	114	1	ENO1	1	8922983	Nonsense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10		8922983	240327638	1	5032											
PRAMEF2	65122	mdanderson.org	37	chr1	12919552	12919552	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttactttacccacaggaggTggaaacttcaagtgctggat	10	9	1	0	rs74056159	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	12919552	T	C	12919552	3	2	51	1	0	0	0	0	1	0	0	0	12521	1696	59	2	298	2	PRAMEF2	1	12919552	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	3996569	12919552	236331069	2	5033											
C1orf177	163747	bcgsc.ca	37	chr1	55279488	55279488	+	Frame_Shift_Del	DEL	A	A	-													ttttctctctttttcttagaAaaaaaagcccagggaactga					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	55279488	A	-	55279488	7	5	51	1	0	1	0	1	0	0	0	0	2036	28	1	0	790	0	C1orf177	1	55279488	Frame_Shift_Del	DEL	A	TCGA-KN-8436-01A-11D-2310-10	42359936	55279488	193971133	3	5034											
NBPF10	100132406	mdanderson.org	37	chr1	145368524	145368524	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattcgactccgtcaatgtActttgaactacctgactcat	5	11	2	2	rs111770733		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	145368524	A	T	145368524	3	4	51	1	0	0	0	0	1	0	0	0	10271	391	14	5	10836	5	NBPF10	1	145368524	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	90089036	145368524	103882097	4	5035											
DPM3	54344	broad.mit.edu	37	chr1	155112594	155112594	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacaccagcaagtaggcgggCagtggccacaggacttcctg	14	12	0	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	155112594	C	A	155112594	2	1	51	1	0	0	0	0	0	0	0	1	4763	697	25	5		5	DPM3	1	155112594	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	9744070	155112594	94138027	5	5036											
USH2A	7399	broad.mit.edu;bcgsc.ca	37	chr1	215953292	215953292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtttgatttctcagggacaCtccagctcagatgcagagcc	10	12	2	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	215953292	C	T	215953292	3	4	51	1	0	0	0	0	1	0	0	0	17142	565	20	4	4848	4	USH2A	1	215953292	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	60840698	215953292	33297329	6	5037											
UGGT1	56886	broad.mit.edu;mdanderson.org	37	chr2	128945096	128945096	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggagtggcaggactacgAccaagagatcaaacagctac	11	12	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	128945096	A	G	128945096	3	3	51	1	0	0	0	0	1	0	0	0	17047	275	10	2	4708	2	UGGT1	2	128945096	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		128945096	114254277	7	5038											
BBS5	129880	bcgsc.ca	37	chr2	170343593	170343593	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttaggtagactcttggtaAcaaatttaagaattctctgg	8	5	2	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	170343593	A	G	170343593	3	3	51	1	0	0	0	0	1	0	0	0	1344	43	2	2	167	2	BBS5	2	170343593	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	41398497	170343593	72855780	8	5039											
GLS	2744	broad.mit.edu	37	chr2	191765397	191765397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagttatatgaaagtgCtaaaaagcagtctggaggaa	12	3	1	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	191765397	C	T	191765397	3	4	51	1	0	0	0	0	1	0	0	0	6519	797	28	4	727	4	GLS	2	191765397	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	21421804	191765397	51433976	9	5040											
GAL3ST2	64090	broad.mit.edu	37	chr2	242743069	242743070	+	Frame_Shift_Del	DEL	CA	CA	-													ggctggtgctcatcgccgagCacctggacgagtccctggtg					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	242743070	CA	-	242743069	7	5	51	1	0	1	0	1	0	0	0	0	6252	710	25	0	699	0	GAL3ST2	2	242743069	Frame_Shift_Del	DEL	CA	TCGA-KN-8436-01A-11D-2310-10	50977672	242743069	456304	10	5041											
IL5RA	3568	mdanderson.org	37	chr3	3144422	3144422	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaacattcctttgctcttgAtcaggatttggtttccattg	7	8	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	3144422	A	G	3144422	2	3	51	1	0	0	0	0	0	0	0	1	7761	330	12	4		4	IL5RA	3	3144422	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		3144422	194878008	11	5042											
ITPR1	3708	mdanderson.org	37	chr3	4856848	4856848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgacacttttgctgacctgAggagtgagaagcagaagaag	13	6	0	6	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	4856848	A	G	4856848	3	3	51	1	0	0	0	0	1	0	0	0	7981	295	11	2	8039	2	ITPR1	3	4856848	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	1712426	4856848	193165582	12	5043											
UBP1	7342	mdanderson.org	37	chr3	33454243	33454243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtctgtctcctgggcgaTtccacttccatccttcaagt	8	13	3	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	33454243	T	C	33454243	3	2	51	1	0	0	0	0	1	0	0	0	17001	1493	52	4	1255	4	UBP1	3	33454243	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	28597395	33454243	164568187	13	5044											
CDCP1	64866	mdanderson.org	37	chr3	45136963	45136963	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagattctagacacacgaaAcagccagggacaaacttgcg	10	11	1	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	45136963	A	G	45136963	2	3	51	1	0	0	0	0	0	0	0	1	3122	41	2	2		2	CDCP1	3	45136963	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	11682720	45136963	152885467	14	5045											
CELSR3	1951	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	48681698	48681698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtggagcaggatgtgcGggcagcgaggagaaacatgg	18	8	0	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	48681698	G	A	48681698	3	1	51	1	0	0	0	0	1	0	0	0	3252	1116	39	1	1858	1	CELSR3	3	48681698	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	3544735	48681698	149340732	15	5046											
IFT80	57560	mdanderson.org	37	chr3	160095234	160095234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgtaactaatgctgtTccttcataattccatcttcc	3	12	2	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	160095234	T	C	160095234	2	2	51	1	0	0	0	0	0	0	0	1	7625	1770	62	4		4	IFT80	3	160095234	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	111413536	160095234	37927196	16	5047											
NAALADL2	254827	mdanderson.org	37	chr3	175042057	175042057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatcctagccatgataccTtcatggtgtcactgaatcca	7	11	2	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	175042057	T	C	175042057	3	2	51	1	0	0	0	0	1	0	0	0	10208	1609	56	2	1051	2	NAALADL2	3	175042057	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	14946823	175042057	22980373	17	5048											
MFN1	55669	mdanderson.org	37	chr3	179085853	179085853	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctgaaggatttcatgcaAgattacaggaatttcagaat	9	5	2	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	179085853	A	G	179085853	3	3	51	1	0	0	0	0	1	0	0	0	9600	64	3	2	967	2	MFN1	3	179085853	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	4043796	179085853	18936577	18	5049											
ATP13A3	79572	broad.mit.edu;mdanderson.org	37	chr3	194158061	194158061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcaggtttacagagacCggcaatggcctcgggcgctc	13	11	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	194158061	C	T	194158061	3	4	51	1	0	0	0	0	1	0	0	0	1129	652	23	1	1762	1	ATP13A3	3	194158061	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	15072208	194158061	3864369	19	5050											
PAK2	5062	mdanderson.org	37	chr3	196530022	196530022	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagcagaaatatctgagCtttactcctcctggtaagag	10	8	1	4	rs115224945	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	196530022	C	T	196530022	2	4	51	1	0	0	0	0	0	0	0	1	11480	796	28	4		4	PAK2	3	196530022	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	2371961	196530022	1492408	20	5051											
ZNF141	7700	mdanderson.org	37	chr4	367169	367169	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaaccctacaaatgtgaaGaatgtggcaaagcctttaat	8	7	0	3	rs145966198		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	367169	G	A	367169	3	1	51	1	0	0	0	0	1	0	0	0	17835	943	33	4	957	4	ZNF141	4	367169	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10		367169	190787107	21	5052											
ZNF141	7700	mdanderson.org	37	chr4	367199	367199	+	Missense_Mutation	SNP	A	A	T													aagcctttaataggtccacaAcccttactaaacataagaga					rs114931928	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	367199	A	T	367199	3	4	51	1	0	0	0	0	1	0	0	0	17835	43	2	5	987	5	ZNF141	4	367199	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	30	367199	190787077	22	5053	123	3									
ZNF141	7700	mdanderson.org	37	chr4	367201	367201	+	Silent	SNP	C	C	A													gcctttaataggtccacaacCcttactaaacataagagaat					rs111394409		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	367201	C	A	367201	2	1	51	1	0	0	0	0	0	0	0	1	17835	610	22	5		5	ZNF141	4	367201	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	2	367201	190787075	23	5054	123	3									
ZNF141	7700	mdanderson.org	37	chr4	367206	367206	+	Missense_Mutation	SNP	C	C	G													taataggtccacaacccttaCtaaacataagagaattcata					rs113884485		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	367206	C	G	367206	3	3	51	1	0	0	0	0	1	0	0	0	17835	565	20	5	994	5	ZNF141	4	367206	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	5	367206	190787070	24	5055	123	3									
UGT2B4	7363	mdanderson.org	37	chr4	70360910	70360910	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcatgtcaaatatttggaAccaaaattcaaaataaagca	4	7	3	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	70360910	A	G	70360910	3	3	51	1	0	0	0	0	1	0	0	0	17067	43	2	2	940	2	UGT2B4	4	70360910	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	69993704	70360910	120793366	25	5056											
C4orf40	401137	mdanderson.org	37	chr4	71021777	71021777	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctttattttagagacggTtccccttcattggtgaggta	9	7	2	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	71021777	T	C	71021777	3	2	51	1	0	0	0	0	1	0	0	0	2290	1725	60	2	64	2	C4orf40	4	71021777	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	660867	71021777	120132499	26	5057											
CDKL2	8999	mdanderson.org	37	chr4	76532490	76532490	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atccaaaatcgcatagcttgAcaacgccagactgggagact	9	11	0	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	76532490	A	G	76532490	3	3	51	1	0	0	0	0	1	0	0	0	3183	275	10	2	1094	2	CDKL2	4	76532490	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	5510713	76532490	114621786	27	5058											
CNOT6L	246175	mdanderson.org	37	chr4	78641756	78641756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccaggacaccaagcacGttcatatgagtcttggaata	10	11	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	78641756	G	A	78641756	2	1	51	1	0	0	0	0	0	0	0	1	3652	1136	40	1		1	CNOT6L	4	78641756	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	2109266	78641756	112512520	28	5059											
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	88537027	C	A	88537027	3	1	51	1	0	0	0	0	1	0	0	0	4819	477	17	5	3227	5	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	9895271	88537027	102617249	29	5060											
DSPP	1834	mdanderson.org	37	chr4	88537081	88537081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcagtgatagcagtgaCagcagcaatagcagtgacag	13	7	0	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	88537081	C	T	88537081	2	4	51	1	0	0	0	0	0	0	0	1	4819	477	17	4		4	DSPP	4	88537081	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	54	88537081	102617195	30	5061											
EIF4E	1977	mdanderson.org	37	chr4	99806181	99806181	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatacatcatcactgtagTcatcaaaagattctccaata	3	11	5	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	99806181	T	C	99806181	3	2	51	1	0	0	0	0	1	0	0	0	5067	1667	58	2	230	2	EIF4E	4	99806181	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	11269100	99806181	91348095	31	5062											
ENPEP	2028	mdanderson.org	37	chr4	111430851	111430851	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcactggtgccatggagaActggggactcatcacgtaca	13	10	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	111430851	A	G	111430851	3	3	51	1	0	0	0	0	1	0	0	0	5167	43	2	2	1100	2	ENPEP	4	111430851	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	11624670	111430851	79723425	32	5063											
ABCE1	6059	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	146044440	146044440	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaaacctgctgatgtctAtttaattgatgaaccatctg	9	8	2	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	146044440	A	G	146044440	3	3	51	1	0	0	0	0	1	0	0	0	64	449	16	4	1502	4	ABCE1	4	146044440	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	34613589	146044440	45109836	33	5064											
FHDC1	85462	mdanderson.org	37	chr4	153897154	153897154	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagaacgagagcatgcgcaAggtcatgcccatcaccaagt	11	11	2	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	153897154	A	G	153897154	3	3	51	1	0	0	0	0	1	0	0	0	5925	72	3	2	2753	2	FHDC1	4	153897154	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	7852714	153897154	37257122	34	5065											
TLR3	7098	mdanderson.org	37	chr4	187004362	187004362	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattccagcctcttcgtaacTtgaccattctggatctaagc	6	13	3	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	187004362	T	C	187004362	2	2	51	1	0	0	0	0	0	0	0	1	16056	1606	56	2		2	TLR3	4	187004362	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	33107208	187004362	4149914	35	5066											
FAT1	2195	broad.mit.edu;hgsc.bcm.edu	37	chr4	187584589	187584589	+	Frame_Shift_Del	DEL	G	G	-													tctttaggagaattttccatGatttctgggtaataaacagg					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	187584589	G	-	187584589	7	5	51	1	0	1	0	1	0	0	0	0	5738	1280	45	0	10422	0	FAT1	4	187584589	Frame_Shift_Del	DEL	G	TCGA-KN-8436-01A-11D-2310-10	580227	187584589	3569687	36	5067	124	2									
FAT1	2195	bcgsc.ca	37	chr4	187584590	187584590	+	Frame_Shift_Del	DEL	G	G	-													ctttaggagaattttccatgAtttctgggtaataaacaggc					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	187584590	G	-	187584590	7	5	51	1	0	1	0	1	0	0	0	0	5738	333	12	0	10423	0	FAT1	4	187584590	Frame_Shift_Del	DEL	G	TCGA-KN-8436-01A-11D-2310-10	1	187584590	3569686	37	5068	124	2									
NKD2	85409	broad.mit.edu	37	chr5	1038447	1038461	+	In_Frame_Del	DEL	CACCACCACCACCAC	CACCACCACCACCAC	-													agcaccaccaccaccacgagCaccaccaccaccaccaccac					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CACCACCACCACCAC	CACCACCACCACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	1038461	CACCACCACCACCAC	-	1038447	7	5	51	1	0	1	0	1	0	0	0	0	10521	710	25	0	1353	0	NKD2	5	1038447	In_Frame_Del	DEL	CACCACCACCACCAC	TCGA-KN-8436-01A-11D-2310-10		1038447	179876813	38	5069											
SLC6A19	340024	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	1214087	1214087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcacggagctggcccagcCggacacctggctggacgcgg	17	14	1	0	rs148139045		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	1214087	C	T	1214087	3	4	51	1	0	0	0	0	1	0	0	0	14780	652	23	1	816	1	SLC6A19	5	1214087	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	175640	1214087	179701173	39	5070											
SLC1A3	6507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	36680556	36680556	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacaatggcgtggacaagcGcgtcaccagattcgtgctcc	12	12	1	1	rs115702388	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	36680556	G	A	36680556	3	1	51	1	0	0	0	0	1	0	0	0	14531	1087	38	1	1197	1	SLC1A3	5	36680556	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	35466469	36680556	144234704	40	5071											
GCNT4	51301	mdanderson.org	37	chr5	74325354	74325354	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatggcaactttgaaggtaTcaggtgccttacgatcataa	9	8	3	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	74325354	T	C	74325354	3	2	51	1	0	0	0	0	1	0	0	0	6357	1435	50	4	856	4	GCNT4	5	74325354	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	37644798	74325354	106589906	41	5072											
RAPGEF6	51735	bcgsc.ca	37	chr5	130788798	130788798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcagaagtcattcgaacaActtggcggatttccttggaa	10	8	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	130788798	A	G	130788798	3	3	51	1	0	0	0	0	1	0	0	0	13140	43	2	2	2151	2	RAPGEF6	5	130788798	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	56463444	130788798	50126462	42	5073											
FNIP1	96459	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131008278	131008278	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgaaatgttctctacatttTgcccaaggagtggatgactg	11	7	1	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	131008278	T	A	131008278	3	1	51	1	0	0	0	0	1	0	0	0	6024	1812	63	5	1661	5	FNIP1	5	131008278	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	219480	131008278	49906982	43	5074											
RNF145	153830	bcgsc.ca	37	chr5	158630640	158630640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccatgttgttttttttttTctttttttttttcttggaga	6	4	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	158630640	T	C	158630640	3	2	51	1	0	0	0	0	1	0	0	0	13542	1792	62	4	2045	4	RNF145	5	158630640	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	27622362	158630640	22284620	44	5075											
HLA-B	3106	mdanderson.org	37	chr6	31323116	31323116	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catctcagggtgaggggcttCggcagcccctcatgctgtac	13	13	2	1	rs1131446	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	31323116	C	T	31323116	2	4	51	1	0	0	0	0	0	0	0	1	7254	871	31	1		1	HLA-B	6	31323116	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10		31323116	139791951	45	5076											
HLA-DRB5	3127	mdanderson.org	37	chr6	32487169	32487169	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cattccactgtgagagggctCgtcacgcttgggtgctccac	12	13	1	1	rs34555743	bycluster	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	32487169	C	T	32487169	2	4	51	1	0	0	0	0	0	0	0	1	7267	871	31	1		1	HLA-DRB5	6	32487169	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	1164053	32487169	138627898	46	5077			1	49		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	mdanderson.org	37	chr6	32487214	32487214	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtgtaaacctctccactTcgaggaactgtttccagcat	8	12	1	0	rs75673486		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	32487214	T	C	32487214	2	2	51	1	0	0	0	0	0	0	0	1	7267	1770	62	4		4	HLA-DRB5	6	32487214	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	45	32487214	138627853	47	5078			1	49		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	mdanderson.org	37	chr6	32487265	32487265	+	Missense_Mutation	SNP	C	C	G													tggaaggtccagtctccattCtgaatcaggcctgtggacac					rs139485758	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	32487265	C	G	32487265	3	3	51	1	0	0	0	0	1	0	0	0	7267	912	32	5	282	5	HLA-DRB5	6	32487265	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	51	32487265	138627802	48	5079	125	2	1	49		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	mdanderson.org	37	chr6	32487268	32487268	+	Silent	SNP	A	A	G													aaggtccagtctccattctgAatcaggcctgtggacaccac					rs75732937	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	32487268	A	G	32487268	2	3	51	1	0	0	0	0	0	0	0	1	7267	242	9	4		4	HLA-DRB5	6	32487268	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	3	32487268	138627799	49	5080	125	2	1	49		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB5	3127	bcgsc.ca	37	chr6	32489853	32489853	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgtcgctgtcgaagcgcaAgtcctcctcttggttataga	10	12	1	1	rs78961241	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	32489853	A	C	32489853	3	2	51	1	0	0	0	0	1	0	0	0	7267	69	3	5	621	5	HLA-DRB5	6	32489853	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	2585	32489853	138625214	50	5081			1	49		5	4	2685	N	T_C_A	2.204313e-07
HLA-DRB1	3123	bcgsc.ca	37	chr6	32551999	32551999	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgttccagtactcagcgTcaggccgccccagctccgtc	11	17	2	0	rs17885129	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	32551999	T	C	32551999	3	2	51	1	0	0	0	0	1	0	0	0	7266	1667	58	2	563	2	HLA-DRB1	6	32551999	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	62146	32551999	138563068	51	5082											
HLA-DRB1	3123	mdanderson.org	37	chr6	32552123	32552123	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctccgtcccattgaagaaatGacactccctcttaggctgcc	7	15	1	3	rs17879702	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	32552123	G	A	32552123	3	1	51	1	0	0	0	0	1	0	0	0	7266	1290	45	4	687	4	HLA-DRB1	6	32552123	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	124	32552123	138562944	52	5083											
HLA-DQA1	3117	bcgsc.ca	37	chr6	32609299	32609299	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaacacaacttgaacatcAtgattaaacgctacaactct	3	11	2	2	rs1064944	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	32609299	A	C	32609299	3	2	51	1	0	0	0	0	1	0	0	0	7262	217	8	5	301	5	HLA-DQA1	6	32609299	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	57176	32609299	138505768	53	5084			2	50	119446	2	2	14	A		5.333112e-05
HLA-DQA1	3117	bcgsc.ca	37	chr6	32609312	32609312	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacatcatgattaaacgctAcaactctaccgctgctacca	5	13	2	1	rs1129808	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	32609312	A	C	32609312	3	2	51	1	0	0	0	0	1	0	0	0	7262	391	14	5	314	5	HLA-DQA1	6	32609312	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	13	32609312	138505755	54	5085			2	50	119446	2	2	14	A		5.333112e-05
PEX6	5190	ucsc.edu	37	chr6	42933101	42933101	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcggcaaggagctgagacAccaccctggagagaagggag	16	10	0	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	42933101	A	G	42933101	3	3	51	1	0	0	0	0	1	0	0	0	11830	159	6	2	481	2	PEX6	6	42933101	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	10323789	42933101	128181966	55	5086											
CAPN11	11131	ucsc.edu	37	chr6	44140054	44140054	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccaggggactgctggctgcTggctgccatcggctccctta	13	14	0	0	rs111320370	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	44140054	T	C	44140054	3	2	51	1	0	0	0	0	1	0	0	0	2649	1580	55	2	443	2	CAPN11	6	44140054	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	1206953	44140054	126975013	56	5087											
CRISP1	167	mdanderson.org	37	chr6	49825056	49825056	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accctcacatactttcatggAcaacataggcagtaagcaag	7	11	2	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	49825056	A	G	49825056	3	3	51	1	0	0	0	0	1	0	0	0	3908	275	10	2	719	2	CRISP1	6	49825056	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	5685002	49825056	121290011	57	5088											
TAX1BP1	8887	mdanderson.org	37	chr7	27839640	27839640	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcaaaaatggagctgaaAtggaaagaacaagtgaaaat	10	4	0	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	27839640	A	G	27839640	2	3	51	1	0	0	0	0	0	0	0	1	15695	98	4	4		4	TAX1BP1	7	27839640	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		27839640	131299023	58	5089											
PHTF2	57157	mdanderson.org	37	chr7	77569448	77569448	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccgactttctcaagctacAgacttggaacaactcacagc	6	13	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	77569448	A	G	77569448	2	3	51	1	0	0	0	0	0	0	0	1	11943	175	7	2		2	PHTF2	7	77569448	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	49729808	77569448	81569215	59	5090											
PCLO	27445	broad.mit.edu;mdanderson.org	37	chr7	82579610	82579610	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttaaaacttcggggatcatCtgtcatattttctcccatgt	6	9	4	0	rs202185916	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	82579610	C	T	82579610	3	4	51	1	0	0	0	0	1	0	0	0	11662	913	32	4	5231	4	PCLO	7	82579610	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	5010162	82579610	76559053	60	5091											
ADAM22	53616	mdanderson.org	37	chr7	87607668	87607668	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttgactcatgttgaccaAgcaagcttccaggttgatgc	10	9	1	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	87607668	A	G	87607668	2	3	51	1	0	0	0	0	0	0	0	1	244	69	3	2		2	ADAM22	7	87607668	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	5028058	87607668	71530995	61	5092											
DOCK4	9732	mdanderson.org;bcgsc.ca	37	chr7	111580241	111580241	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctaagaactgcacagccaaAgggtcgtcggtactggacac	12	11	0	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	111580241	A	G	111580241	3	3	51	1	0	0	0	0	1	0	0	0	4726	72	3	2	5167	2	DOCK4	7	111580241	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	23972573	111580241	47558422	62	5093											
FLNC	2318	bcgsc.ca	37	chr7	128477551	128477551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagctcaaacctggtgccCctgttcgatccaagcagctg	9	15	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	128477551	C	T	128477551	3	4	51	1	0	0	0	0	1	0	0	0	5984	623	22	3	813	3	FLNC	7	128477551	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	16897310	128477551	30661112	63	5094											
ARHGEF5	7984	mdanderson.org	37	chr7	144070326	144070326	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaatgtccagagtatgcgAcggacagaggaactaatcta	10	8	1	2	rs201695853		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	144070326	A	G	144070326	2	3	51	1	0	0	0	0	0	0	0	1	911	262	10	2		2	ARHGEF5	7	144070326	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10	15592775	144070326	15068337	64	5095											
DCAF13	25879	mdanderson.org	37	chr8	104442840	104442840	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attgttatacttgtttttagAcatttctcttgggaagttgt	8	4	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	104442840	A	G	104442840	3	3	51	1	0	0	0	0	1	0	0	0	4298	289	10	2	1103	2	DCAF13	8	104442840	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		104442840	41921182	65	5096											
GRIN3A	116443	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	104432589	104432589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgccccttgggagtcaaaCcaaatggactcttccattca	7	13	3	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	104432589	C	A	104432589	3	1	51	1	0	0	0	0	1	0	0	0	6841	507	18	5	1270	5	GRIN3A	9	104432589	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10		104432589	36780842	66	5097											
EPB41L4B	54566	mdanderson.org	37	chr9	112015799	112015799	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggttcttcgtaacctggAgccatgtgtagcttgatatt	11	8	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	112015799	A	G	112015799	3	3	51	1	0	0	0	0	1	0	0	0	5195	304	11	2	1713	2	EPB41L4B	9	112015799	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	7583210	112015799	29197632	67	5098											
C9orf152	401546	mdanderson.org	37	chr9	112963527	112963527	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatcccacaagcttgccccTatgatgtacttgatgactgg	9	11	0	4	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	112963527	T	C	112963527	3	2	51	1	0	0	0	0	1	0	0	0	2488	1521	53	2	302	2	C9orf152	9	112963527	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	947728	112963527	28249904	68	5099											
DNM1	1759	bcgsc.ca	37	chr9	130984588	130984588	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaacttccgccctgatgAcccagctcgcaagaccaagg	9	15	0	4	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	130984588	A	G	130984588	3	3	51	1	0	0	0	0	1	0	0	0	4707	275	10	2	988	2	DNM1	9	130984588	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	18021061	130984588	10228843	69	5100											
KCNT1	57582	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	138641963	138641963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtccaggtggagttctacGtcaacgagaacaccttcaag	12	10	3	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	138641963	G	A	138641963	3	1	51	1	0	0	0	0	1	0	0	0	8152	1145	40	1	284	1	KCNT1	9	138641963	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	7657375	138641963	2571468	70	5101											
TUBB8	347688	mdanderson.org	37	chr10	94011	94011	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcagctccgcgccttcGgtgtagtgtcccttggccca	10	16	1	0	rs71485057		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	94011	G	T	94011	2	4	51	1	0	0	0	0	0	0	0	1	16867	1103	39	5		5	TUBB8	10	94011	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10		94011	135440736	71	5102											
HNRNPF	3185	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	43882268	43882268	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaagaagagttctatataTctgtgctgcatattggccct	8	8	3	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	43882268	T	A	43882268	3	1	51	1	0	0	0	0	1	0	0	0	7323	1432	50	5	186	5	HNRNPF	10	43882268	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	43788257	43882268	91652479	72	5103											
ANK3	288	mdanderson.org	37	chr10	61815749	61815749	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttcaaatttgccagcTtctcctttgagatatgaggt	8	8	2	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	61815749	T	C	61815749	2	2	51	1	0	0	0	0	0	0	0	1	622	1606	56	2		2	ANK3	10	61815749	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	17933481	61815749	73718998	73	5104											
NDST2	8509	broad.mit.edu	37	chr10	75563396	75563397	+	Frame_Shift_Ins	INS	-	-	G													gatgatcttggctcgtggcaINSggagggcagccccccgccgt					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	75563397	-	G	75563396	7	5	51	1	0	1	1	0	0	0	0	0	10335	188	7	0	593	0	NDST2	10	75563396	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10	13747647	75563396	59971351	74	5105											
VTI1A	143187	mdanderson.org	37	chr10	114224340	114224340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggaagtccgagagatacCaccccaaagtcgagggatgt	12	9	0	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	114224340	C	T	114224340	3	4	51	1	0	0	0	0	1	0	0	0	17341	594	21	4	198	4	VTI1A	10	114224340	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	38660944	114224340	21310407	75	5106											
MUC6	4588	mdanderson.org	37	chr11	1016738	1016738	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagtgatgatgactgtgtgAgtacttggagtcaccaagga	14	5	1	4	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	1016738	A	T	1016738	2	4	51	1	0	0	0	0	0	0	0	1	10058	291	11	5		5	MUC6	11	1016738	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		1016738	133989778	76	5107			3	51		3	3	730	N	G_A	4.457194e-06
MUC6	4588	bcgsc.ca	37	chr11	1016809	1016809	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggtctgagggtgtgatgGggttggataggtagtggtgg	22	1	1	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	1016809	G	T	1016809	3	4	51	1	0	0	0	0	1	0	0	0	10058	1232	43	5	1339	5	MUC6	11	1016809	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	71	1016809	133989707	77	5108			3	51		3	3	730	N	G_A	4.457194e-06
MUC6	4588	mdanderson.org	37	chr11	1017467	1017467	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgggccacaggggttctGgtgcctgtactggtgtggtt	18	7	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	1017467	G	T	1017467	2	4	51	1	0	0	0	0	0	0	0	1	10058	1335	47	5		5	MUC6	11	1017467	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	658	1017467	133989049	78	5109			3	51		3	3	730	N	G_A	4.457194e-06
CTSF	8722	broad.mit.edu;mdanderson.org	37	chr11	66335107	66335107	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcacgtgtcttccgagCtcatccaggacttggaagct	11	12	2	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	66335107	C	T	66335107	2	4	51	1	0	0	0	0	0	0	0	1	4065	796	28	4		4	CTSF	11	66335107	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	65317640	66335107	68671409	79	5110											
RAD52	5893	mdanderson.org	37	chr12	1023070	1023070	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctgctacctgttgtgcgTtggtcagcgctataagtttg	11	9	2	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	1023070	T	C	1023070	2	2	51	1	0	0	0	0	0	0	0	1	13083	1722	60	2		2	RAD52	12	1023070	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10		1023070	132828825	80	5111											
TAS2R43	259289	mdanderson.org	37	chr12	11244591	11244591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attataagcagtagttcttaCttctacactattaaaagctg	5	7	2	0	rs73064968	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	11244591	C	A	11244591	3	1	51	1	0	0	0	0	1	0	0	0	15682	565	20	5	695	5	TAS2R43	12	11244591	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	10221521	11244591	122607304	81	5112											
GPRC5A	9052	mdanderson.org	37	chr12	13061805	13061805	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttccttcacgggctggaagAgacatggggcccacatctac	12	12	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	13061805	A	G	13061805	3	3	51	1	0	0	0	0	1	0	0	0	6782	296	11	2	624	2	GPRC5A	12	13061805	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	1817214	13061805	120790090	82	5113											
RECQL	5965	broad.mit.edu	37	chr12	21623272	21623272	+	Frame_Shift_Del	DEL	C	C	-													tcagaatgacaagtttgagaCgattcagcctacaaaaaaaa					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	21623272	C	-	21623272	7	5	51	1	0	1	0	1	0	0	0	0	13293	523	19	0	147	0	RECQL	12	21623272	Frame_Shift_Del	DEL	C	TCGA-KN-8436-01A-11D-2310-10	8561467	21623272	112228623	83	5114											
DENND5B	160518	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	31540710	31540710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatggaatccactgtgggaGcaggcgatccctacagaccc	11	13	0	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	31540710	G	A	31540710	3	1	51	1	0	0	0	0	1	0	0	0	4474	971	34	4	176	4	DENND5B	12	31540710	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	9917438	31540710	102311185	84	5115											
C12orf35	55196	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr12	32136955	32136955	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attcaggaggatatttacccTcaggaaatagatgcatccag	9	8	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	32136955	T	A	32136955	2	1	51	1	0	0	0	0	0	0	0	1	1694	1538	54	5		5	C12orf35	12	32136955	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	596245	32136955	101714940	85	5116											
KRT6C	286887	mdanderson.org	37	chr12	52867105	52867105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggagactctggttgacGgtgacctcttggatgcctcc	13	11	3	3	rs71455206	bycluster;byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	52867105	G	A	52867105	2	1	51	1	0	0	0	0	0	0	0	1	8543	1103	39	1		1	KRT6C	12	52867105	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	20730150	52867105	80984790	86	5117											
KRT6A	3853	mdanderson.org	37	chr12	52886556	52886556	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaggagactctggttgacGgtgacctcttggatgcctcc	13	11	3	3	rs1707768		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	52886556	G	A	52886556	2	1	51	1	0	0	0	0	0	0	0	1	8541	1103	39	1		1	KRT6A	12	52886556	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	19451	52886556	80965339	87	5118											
KRT76	51350	mdanderson.org	37	chr12	53165930	53165930	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctcctctgggcaatctccTcatactgggcgcggacctcg	11	15	3	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	53165930	T	C	53165930	3	2	51	1	0	0	0	0	1	0	0	0	8550	1551	54	2	851	2	KRT76	12	53165930	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	279374	53165930	80685965	88	5119											
ACSS3	79611	broad.mit.edu;mdanderson.org	37	chr12	81503375	81503375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaacatttgttacaatgcCgttgatcgtcatattgaaaa	6	7	1	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	81503375	C	T	81503375	2	4	51	1	0	0	0	0	0	0	0	1	190	639	23	1		1	ACSS3	12	81503375	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	28337445	81503375	52348520	89	5120											
HVCN1	84329	broad.mit.edu	37	chr12	111099110	111099112	+	In_Frame_Del	DEL	CTC	CTC	-													actggtgtgggtggtggctgCtcctcctcctcctcctcctc					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	111099112	CTC	-	111099110	7	5	51	1	0	1	0	1	0	0	0	0	7523	796	28	0	676	0	HVCN1	12	111099110	In_Frame_Del	DEL	CTC	TCGA-KN-8436-01A-11D-2310-10	29595735	111099110	22752785	90	5121											
CCDC64	92558	mdanderson.org	37	chr12	120530940	120530940	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcgctgaaggcaaacgacTcttctcattcttcaggaaaa	7	11	4	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	120530940	T	C	120530940	3	2	51	1	0	0	0	0	1	0	0	0	2862	1551	54	2	1731	2	CCDC64	12	120530940	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	9431830	120530940	13320955	91	5122											
ZMYM2	7750	mdanderson.org	37	chr13	20579236	20579236	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atataactacaatgaaaggaAccattgttgctcaagtggat	8	6	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	20579236	A	G	20579236	3	3	51	1	0	0	0	0	1	0	0	0	17805	43	2	2	1166	2	ZMYM2	13	20579236	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		20579236	94590642	92	5123											
PABPC3	5042	mdanderson.org	37	chr13	25671925	25671925	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaagttacaatgcaacagcTtgctgttcatgtacaaggtc	8	9	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	25671925	T	C	25671925	3	2	51	1	0	0	0	0	1	0	0	0	11444	1609	56	2	1591	2	PABPC3	13	25671925	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	5092689	25671925	89497953	93	5124											
ALG11	440138	mdanderson.org;bcgsc.ca	37	chr13	52586578	52586578	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccggcgaaaggagctgGtgcctgtgcaagttgttgag	18	8	0	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	52586578	G	T	52586578	3	4	51	1	0	0	0	0	1	0	0	0	513	1270	44	5	26	5	ALG11	13	52586578	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	26914653	52586578	62583300	94	5125											
TGM1	7051	mdanderson.org	37	chr14	24730943	24730943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgatcagaggattcataggTccgggacaggaggaggagca	17	7	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	24730943	T	C	24730943	3	2	51	1	0	0	0	0	1	0	0	0	15933	1667	58	2	2039	2	TGM1	14	24730943	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		24730943	82618597	95	5126											
NIN	51199	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr14	51196406	51196406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatcccaagcatgaggggaCgggctaggcgtcgcagtgga	16	9	0	1	rs145555295	bycluster;by1000genomes	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	51196406	C	T	51196406	2	4	51	1	0	0	0	0	0	0	0	1	10496	523	19	1		1	NIN	14	51196406	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	26465463	51196406	56153134	96	5127											
TECPR2	9895	mdanderson.org	37	chr14	102881076	102881076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactctgcaaagaagtctgcTcttttacactgaagaaaagt	7	8	3	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	102881076	T	C	102881076	3	2	51	1	0	0	0	0	1	0	0	0	15848	1551	54	2	598	2	TECPR2	14	102881076	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	51684670	102881076	4468464	97	5128											
MYO5C	55930	mdanderson.org	37	chr15	52510728	52510728	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctcaccctgttttccaaAgtgagccgggatgcttcctg	9	13	1	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	52510728	A	G	52510728	2	3	51	1	0	0	0	0	0	0	0	1	10158	59	3	2		2	MYO5C	15	52510728	Silent	SNP	A	TCGA-KN-8436-01A-11D-2310-10		52510728	50020664	98	5129											
UNC13C	440279	broad.mit.edu	37	chr15	54527276	54527276	+	Frame_Shift_Del	DEL	A	A	-													agcatgccggatcttcgcagAaaaaaaactttgcctattgt					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	54527276	A	-	54527276	7	5	51	1	0	1	0	1	0	0	0	0	17092	243	9	0	3134	0	UNC13C	15	54527276	Frame_Shift_Del	DEL	A	TCGA-KN-8436-01A-11D-2310-10	2016548	54527276	48004116	99	5130											
AQP9	366	mdanderson.org	37	chr15	58458901	58458901	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggctgtgttgcccaagcTattctcagtcgaggacgttt	12	9	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	58458901	T	C	58458901	2	2	51	1	0	0	0	0	0	0	0	1	835	1509	53	2		2	AQP9	15	58458901	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	3931625	58458901	44072491	100	5131											
ERCC4	2072	broad.mit.edu	37	chr16	14041910	14041911	+	Frame_Shift_Ins	INS	-	-	A													ttgaggagctgaaacaaagcINSaagccacagcctgatgcggc					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	14041911	-	A	14041910	7	5	51	1	0	1	1	0	0	0	0	0	5254	709	25	0	2499	0	ERCC4	16	14041910	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10		14041910	76312843	101	5132											
ABCC6	368	broad.mit.edu	37	chr16	16278826	16278827	+	Frame_Shift_Ins	INS	-	-	G													gttctgtacctgtggaggcaINSgggagggctttcctgggacc					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	16278827	-	G	16278826	7	5	51	1	0	1	1	0	0	0	0	0	57	188	7	0	2646	0	ABCC6	16	16278826	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10	2236916	16278826	74075927	102	5133											
HSD11B2	3291	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr16	67470735	67470735	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcctggggctcatgtacttCatccactactacctgcctga	9	14	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	67470735	C	A	67470735	3	1	51	1	0	0	0	0	1	0	0	0	7435	825	29	5	1065	5	HSD11B2	16	67470735	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	51191909	67470735	22884018	103	5134											
TP53	7157	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7574015	7574015	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctctcggaacatctcgaAgcgctcacgcccacggatct	9	16	4	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	7574015	A	T	7574015	3	4	51	1	0	0	0	0	1	0	0	0	16486	72	3	5	177	5	TP53	17	7574015	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10		7574015	73621195	104	5135											
DHX58	79132	bcgsc.ca	37	chr17	40263795	40263795	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagtctctaggtgccgcTtggccacataagcagccgcc	10	16	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	40263795	T	C	40263795	3	2	51	1	0	0	0	0	1	0	0	0	4551	1609	56	2	1968	2	DHX58	17	40263795	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	32689780	40263795	40931415	105	5136											
SMCHD1	23347	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr18	2703826	2703826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctaaaaagcaaggtcCctgggcaacatatgcagcaa	8	11	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	2703826	C	A	2703826	3	1	51	1	0	0	0	0	1	0	0	0	14886	623	22	5	1834	5	SMCHD1	18	2703826	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10		2703826	75373422	106	5137											
GNG7	2788	broad.mit.edu	37	chr19	2515020	2515020	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagaacatatgagaacacagTtataaaataatacaaggttt	7	4	0	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	2515020	T	A	2515020	3	1	51	1	0	0	0	0	1	0	0	0	6587	1732	60	5	3	5	GNG7	19	2515020	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		2515020	56613963	107	5138											
PIP5K1C	23396	mdanderson.org	37	chr19	3656451	3656451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaactcggcctccttgtgCatgacggtcttgatgatgaa	12	9	1	4	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	3656451	C	T	3656451	3	4	51	1	0	0	0	0	1	0	0	0	12021	710	25	4	1485	4	PIP5K1C	19	3656451	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	1141431	3656451	55472532	108	5139											
FUT3	2525	mdanderson.org	37	chr19	5843822	5843822	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctggattcctgctgcagTttccagcaggccttgcagaa	10	12	0	1	rs199931170	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	5843822	T	C	5843822	2	2	51	1	0	0	0	0	0	0	0	1	6157	1722	60	2		2	FUT3	19	5843822	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	2187371	5843822	53285161	109	5140											
MUC16	94025	broad.mit.edu	37	chr19	9054266	9054267	+	Frame_Shift_Ins	INS	-	-	G													caggcgaagtggatgtctgaINSgggcctttgactggtcttat					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	9054267	-	G	9054266	7	5	51	1	0	1	1	0	0	0	0	0	10051	291	11	0	12491	0	MUC16	19	9054266	Frame_Shift_Ins	INS	-	TCGA-KN-8436-01A-11D-2310-10	3210444	9054266	50074717	110	5141											
FBXW9	84261	ucsc.edu	37	chr19	12807079	12807079	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcgcggagcgcgtggcacAcccgcgacaggacgtggagc	18	13	0	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	12807079	A	G	12807079	3	3	51	1	0	0	0	0	1	0	0	0	5820	159	6	2	1099	2	FBXW9	19	12807079	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	3752813	12807079	46321904	111	5142											
RHPN2	85415	mdanderson.org	37	chr19	33493830	33493830	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgcaagcatcattttgacGagcacgctgagcatggcagg	13	9	1	2	rs74453945	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	33493830	G	A	33493830	2	1	51	1	0	0	0	0	0	0	0	1	13444	1045	37	1		1	RHPN2	19	33493830	Silent	SNP	G	TCGA-KN-8436-01A-11D-2310-10	20686751	33493830	25635153	112	5143											
TMEM147	10430	ucsc.edu;bcgsc.ca	37	chr19	36036858	36036858	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctttgtccaactctgcaAggtgagggccaccgggaagc	12	13	2	1	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	36036858	A	G	36036858	3	3	51	1	0	0	0	0	1	0	0	0	16165	86	3	2	152	2	TMEM147	19	36036858	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	2543028	36036858	23092125	113	5144											
HRC	3270	mdanderson.org	37	chr19	49657916	49657916	+	Silent	SNP	T	T	C													tcctcctcctcctcctcctcTtctccttcatcatcttcccc					rs7409255		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	49657916	T	C	49657916	2	2	51	1	0	0	0	0	0	0	0	1	7410	1606	56	2		2	HRC	19	49657916	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	13621058	49657916	9471067	114	5145	126	2									
HRC	3270	mdanderson.org	37	chr19	49657920	49657920	+	Missense_Mutation	SNP	C	C	T													cctcctcctcctcctcttctCcttcatcatcttccccatca					rs200730671		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	49657920	C	T	49657920	3	4	51	1	0	0	0	0	1	0	0	0	7410	855	30	3	1548	3	HRC	19	49657920	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	4	49657920	9471063	115	5146	126	2									
PTPRH	5794	mdanderson.org	37	chr19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atccacggtgatgttagtgtGtgctgtgcttcgagtccctg	13	9	0	1	rs200319382		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	55716805	G	A	55716805	3	1	51	1	0	0	0	0	1	0	0	0	12895	1377	48	4	2907	4	PTPRH	19	55716805	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	6058885	55716805	3412178	116	5147											
PEG3	5178	ucsc.edu;mdanderson.org	37	chr19	57328023	57328023	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgttcacgttcacgttcaTgttcacgctcattatctttg	6	12	6	0	rs79960989	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	57328023	T	C	57328023	3	2	51	1	0	0	0	0	1	0	0	0	11799	1464	51	4	2983	4	PEG3	19	57328023	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	1611218	57328023	1800960	117	5148											
SIRPB1	10326	mdanderson.org	37	chr20	1585454	1585454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaggtgacgtgggccaCctcgcagatgacttgagagt	14	10	0	4	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	1585454	C	T	1585454	3	4	51	1	0	0	0	0	1	0	0	0	14431	507	18	3	1660	3	SIRPB1	20	1585454	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10		1585454	61440066	118	5149											
JAG1	182	mdanderson.org	37	chr20	10621581	10621581	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcccgtatatcttcagcagActggaaaaacaattgtcaga	7	9	3	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	10621581	A	G	10621581	3	3	51	1	0	0	0	0	1	0	0	0	7995	289	10	2	615	2	JAG1	20	10621581	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	9036127	10621581	52403939	119	5150											
BAGE	574	hgsc.bcm.edu;mdanderson.org	37	chr21	11097574	11097574	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccatcttcaggctccaaccTccagctcaccacaggggact	8	17	3	0	rs55673353	bycluster;byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	11097574	T	A	11097574	3	1	51	1	0	0	0	0	1	0	0	0	1295	1550	54	5	34	5	BAGE	21	11097574	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		11097574	37032321	120	5151											
ERG	2078	mdanderson.org	37	chr21	39817391	39817391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctggctgggggttgagAcagccaatcctgctgaggga	16	10	0	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	39817391	A	G	39817391	3	3	51	1	0	0	0	0	1	0	0	0	5261	275	10	2	1303	2	ERG	21	39817391	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	28719817	39817391	8312504	121	5152											
KRTAP10-10	353333	ucsc.edu	37	chr21	46057634	46057634	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtgtgcctgtctgctgTgtgcccgtctgctgcgtgcc	14	13	2	0	rs61029972	bycluster;byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	46057634	T	C	46057634	2	2	51	1	0	0	0	0	0	0	0	1	8567	1702	59	2		2	KRTAP10-10	21	46057634	Silent	SNP	T	TCGA-KN-8436-01A-11D-2310-10	6240243	46057634	2072261	122	5153											
AIFM3	150209	ucsc.edu	37	chr22	21334338	21334338	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatcgccgtggccagcaTgaactacgatcccattgtgt	12	11	0	2	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	21334338	T	C	21334338	3	2	51	1	0	0	0	0	1	0	0	0	428	1464	51	4	1770	4	AIFM3	22	21334338	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		21334338	29970228	123	5154											
FAM118A	55007	mdanderson.org	37	chr22	45723920	45723920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacaagcccatggagtcCctggacttgaaggacaagac	11	11	0	3	rs111386114		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	45723920	C	T	45723920	2	4	51	1	0	0	0	0	0	0	0	1	5454	610	22	3		3	FAM118A	22	45723920	Silent	SNP	C	TCGA-KN-8436-01A-11D-2310-10	24389582	45723920	5580646	124	5155											
FAM9C	171484	mdanderson.org	37	chrX	13058890	13058890	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatacctttttagttgtgTtgttctcaaaacatttttaa	4	6	2	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	13058890	T	C	13058890	3	2	51	1	0	0	0	0	1	0	0	0	5710	1725	60	2	196	2	FAM9C	23	13058890	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10		13058890	142211670	125	5156											
SSX7	280658	mdanderson.org	37	chrX	52681937	52681937	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctagtttagtcatggccTcatactttctcttcatatac	4	11	4	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	52681937	T	C	52681937	3	2	51	1	0	0	0	0	1	0	0	0	15309	1551	54	2	419	2	SSX7	23	52681937	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	39623047	52681937	102588623	126	5157											
RGAG4	340526	mdanderson.org	37	chrX	71350156	71350156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttcctcctcattcttgTtccttatctcctcctcctcc	1	20	3	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		C	71350156	T	C	71350156	3	2	51	1	0	0	0	0	1	0	0	0	13367	1725	60	2	478	2	RGAG4	23	71350156	Missense_Mutation	SNP	T	TCGA-KN-8436-01A-11D-2310-10	18668219	71350156	83920404	127	5158											
LPAR4	2846	mdanderson.org	37	chrX	78010586	78010586	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaaaatgagaagtgagActgctatttttatcaccaat	8	6	1	3	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		G	78010586	A	G	78010586	3	3	51	1	0	0	0	0	1	0	0	0	8979	275	10	2	222	2	LPAR4	23	78010586	Missense_Mutation	SNP	A	TCGA-KN-8436-01A-11D-2310-10	6660430	78010586	77259974	128	5159											
GPR50	9248	hgsc.bcm.edu	37	chrX	150349560	150349560	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagccaccctaaacccaCcactggccacatcaagccag	5	20	1	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		T	150349560	C	T	150349560	3	4	51	1	0	0	0	0	1	0	0	0	6754	507	18	3	1511	3	GPR50	23	150349560	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	72338974	150349560	4921000	129	5160											
GABRE	2564	mdanderson.org	37	chrX	151123190	151123190	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctacaagttaaggcaaaCaagccagtagagcacattga	8	9	0	2	rs1061417	byfrequency	TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	151123190	C	A	151123190	3	1	51	1	0	0	0	0	1	0	0	0	6222	478	17	5	20	5	GABRE	23	151123190	Missense_Mutation	SNP	C	TCGA-KN-8436-01A-11D-2310-10	773630	151123190	4147370	130	5161											
ABCD1	215	mdanderson.org	37	chrX	153008788	153008788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctctccatcacccaccGgccctccctgtggtaggtgc	9	19	2	0	novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		A	153008788	G	A	153008788	3	1	51	1	0	0	0	0	1	0	0	0	60	1116	39	1	2013	1	ABCD1	23	153008788	Missense_Mutation	SNP	G	TCGA-KN-8436-01A-11D-2310-10	1885598	153008788	2261772	131	5162											
ATP6AP1	537	broad.mit.edu;hgsc.bcm.edu	37	chrX	153662709	153662745	+	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-													ttctctgtggcgtacaaggaCcagtgggaggacctgactcc					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	153662745	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	153662709	7	5	51	1	0	1	0	1	0	0	0	0	1169	506	18	0	866	0	ATP6AP1	23	153662709	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	TCGA-KN-8436-01A-11D-2310-10	653921	153662709	1607851	132	5163	127	2									
ATP6AP1	537	bcgsc.ca	37	chrX	153662710	153662746	+	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-													tctctgtggcgtacaaggacCagtgggaggacctgactccc					novel		TCGA-KN-8436-01A-11D-2310-10	TCGA-KN-8436-11A-01D-2311-10	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f150a5ed-a759-488c-8e9f-ef78b544382a	eebc909a-ec85-460b-8c31-fa959090bf28		-	153662746	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	153662710	7	5	51	1	0	1	0	1	0	0	0	0	1169	595	21	0	867	0	ATP6AP1	23	153662710	Frame_Shift_Del	DEL	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	TCGA-KN-8436-01A-11D-2310-10	1	153662710	1607850	133	5164	127	2									
MTOR	2475	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	11174395	11174395	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccatcagcctccagttcAgcaaggggtcatagacaaag	10	11	3	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	11174395	A	C	11174395	3	2	52	1	0	0	0	0	1	0	0	0	10032	188	7	5	393	5	MTOR	1	11174395	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10		11174395	238076226	1	5165											
PRDM2	7799	broad.mit.edu	37	chr1	14107869	14107869	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgggaatatctttgtgtgTtctgtttgtaaaaaagaatt	10	2	2	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	14107869	T	C	14107869	2	2	52	1	0	0	0	0	0	0	0	1	12547	1731	60	2		2	PRDM2	1	14107869	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10	2933474	14107869	235142752	2	5166											
TAS1R2	80834	broad.mit.edu	37	chr1	19166380	19166380	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttgcccatgtaggcgaAgctgaaacccaccactgaga	9	13	1	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	19166380	A	G	19166380	3	3	52	1	0	0	0	0	1	0	0	0	15664	72	3	2	290	2	TAS1R2	1	19166380	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10	5058511	19166380	230084241	3	5167											
LCK	3932	broad.mit.edu	37	chr1	32741193	32741193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcaagaacctgagccGcaaggacgcggagcggcagc	14	12	2	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	32741193	G	A	32741193	3	1	52	1	0	0	0	0	1	0	0	0	8738	1087	38	1	419	1	LCK	1	32741193	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	13574813	32741193	216509428	4	5168											
NOTCH2	4853	broad.mit.edu	37	chr1	120539779	120539780	+	Frame_Shift_Ins	INS	-	-	G													gaaccaggcaggttgaggcaINSggtgccaccatgctggcagt					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	120539780	-	G	120539779	7	5	52	1	0	1	1	0	0	0	0	0	10627	188	7	0	6947	0	NOTCH2	1	120539779	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	87798586	120539779	128710842	5	5169											
INTS3	65123	ucsc.edu	37	chr1	153735835	153735835	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtactccagctacagaaggGgaggtgggtacagaccttgt	14	8	0	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	153735835	G	T	153735835	3	4	52	1	0	0	0	0	1	0	0	0	7840	1232	43	5	1825	5	INTS3	1	153735835	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	33196056	153735835	95514786	6	5170											
CCDC74A	90557	broad.mit.edu	37	chr2	132290264	132290265	+	Frame_Shift_Ins	INS	-	-	C													cacaccccccaatgatcctgINSccccttcccctgcgaaagcc					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	132290265	-	C	132290264	7	5	52	1	0	1	1	0	0	0	0	0	2874	1306	46	0	804	0	CCDC74A	2	132290264	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		132290264	110909109	7	5171											
DNAJC13	23317	ucsc.edu	37	chr3	132193881	132193881	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcatttaatattgacagAgaacttggaagtgcaaatgt	10	4	0	3	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	132193881	A	G	132193881	2	3	52	1	0	0	0	0	0	0	0	1	4669	301	11	2		2	DNAJC13	3	132193881	Silent	SNP	A	TCGA-KN-8437-01A-11D-2310-10		132193881	65828549	8	5172											
CLRN1	7401	broad.mit.edu	37	chr3	150659389	150659389	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaatgaagctcaaaaggTacagccctaggggaccatgc	11	10	1	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	150659389	T	A	150659389	3	1	52	1	0	0	0	0	1	0	0	0	3586	1638	57	5	318	5	CLRN1	3	150659389	Missense_Mutation	SNP	T	TCGA-KN-8437-01A-11D-2310-10	18465508	150659389	47363041	9	5173											
MUC4	4585	broad.mit.edu	37	chr3	195505843	195505843	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggggtggcgtgacctGtggatgctgaggaagtgtcg	20	5	0	3	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	195505843	G	C	195505843	3	2	52	1	0	0	0	0	1	0	0	0	10056	1377	48	5		5	MUC4	3	195505843	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	44846454	195505843	2516587	10	5174											
MUC4	4585	mdanderson.org	37	chr3	195509029	195509029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggatgctgaggaagtgCtggtgacaggaagagcggtg	19	5	0	3	rs34770050	alternate_allele	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	195509029	C	T	195509029	3	4	52	1	0	0	0	0	1	0	0	0	10056	797	28	4		4	MUC4	3	195509029	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	3186	195509029	2513401	11	5175											
G3BP2	9908	ucsc.edu	37	chr4	76573848	76573848	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggtcctctaggaggaaaAccaggtcgttctctaggtcg	12	10	2	0	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	76573848	A	G	76573848	2	3	52	1	0	0	0	0	0	0	0	1	6194	30	2	2		2	G3BP2	4	76573848	Silent	SNP	A	TCGA-KN-8437-01A-11D-2310-10		76573848	114580428	12	5176											
C5orf42	65250	ucsc.edu;mdanderson.org	37	chr5	37221454	37221454	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttattttcttttacaggTagttgggaccatctcaggat	8	7	3	0	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	37221454	T	A	37221454	2	1	52	1	0	0	0	0	0	0	0	1	2322	1625	57	5		5	C5orf42	5	37221454	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10		37221454	143693806	13	5177											
PAIP2	51247	ucsc.edu	37	chr5	138700258	138700258	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattataaatctagatagaAgaggagttatgggaagaaga	11	1	1	5	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	138700258	A	G	138700258	2	3	52	1	0	0	0	0	0	0	0	1	11476	69	3	2		2	PAIP2	5	138700258	Silent	SNP	A	TCGA-KN-8437-01A-11D-2310-10	101478804	138700258	42215002	14	5178											
PRSS35	167681	broad.mit.edu	37	chr6	84233685	84233685	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgtgttcatgatggaaaGgactatgtcaaagggagtaa	12	5	2	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	84233685	G	A	84233685	2	1	52	1	0	0	0	0	0	0	0	1	12713	991	35	4		4	PRSS35	6	84233685	Silent	SNP	G	TCGA-KN-8437-01A-11D-2310-10		84233685	86881382	15	5179											
IGF2R	3482	broad.mit.edu	37	chr6	160485473	160485473	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acttatgaaaatggcttgttAaaaatgaacttcacgggggg	11	5	1	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	160485473	A	T	160485473	3	4	52	1	0	0	0	0	1	0	0	0	7637	359	13	5	4037	5	IGF2R	6	160485473	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10	76251788	160485473	10629594	16	5180											
SPDYE6	729597	broad.mit.edu	37	chr7	101988975	101988976	+	Frame_Shift_Del	DEL	TG	TG	-													tatgcgagagcggttcttccTggccctcgggttcatggaat					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		-	101988976	TG	-	101988975	7	5	52	1	0	1	0	1	0	0	0	0	15133	1579	55	0	318	0	SPDYE6	7	101988975	Frame_Shift_Del	DEL	TG	TCGA-KN-8437-01A-11D-2310-10		101988975	57149688	17	5181											
CCNE2	9134	hgsc.bcm.edu	37	chr8	95897417	95897417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gattgttacaggacaaagttCccattttaaagcctattaaa	6	7	0	0	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	95897417	C	T	95897417	3	4	52	1	0	0	0	0	1	0	0	0	2950	864	30	3	521	3	CCNE2	8	95897417	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10		95897417	50466605	18	5182											
CBWD6	644019	broad.mit.edu	37	chr9	69256826	69256827	+	Frame_Shift_Ins	INS	-	-	C													gaggcaaccgtttctaagttINSccagccactcttcatagagc					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	69256827	-	C	69256826	7	5	52	1	0	1	1	0	0	0	0	0	2741	1783	62	0	934	0	CBWD6	9	69256826	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		69256826	71956605	19	5183											
KIAA1274	27143	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr10	72293731	72293731	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cacgggcctcccccagccctCgtcttcagctgccagatggg	11	18	2	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	72293731	C	G	72293731	2	3	52	1	0	0	0	0	0	0	0	1	8281	871	31	5		5	KIAA1274	10	72293731	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10		72293731	63241016	20	5184											
DDIT4	54541	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	74034518	74034518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcagtgaccctgaggatgaaCacttgtgtgccaacctgatg	11	10	1	4	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	74034518	C	A	74034518	3	1	52	1	0	0	0	0	1	0	0	0	4363	478	17	5	277	5	DDIT4	10	74034518	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	1740787	74034518	61500229	21	5185											
OTUB1	55611	bcgsc.ca	37	chr11	63756163	63756163	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggtgtcagagcggctggAgctctcggtcctatacaagg	14	10	3	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	63756163	A	G	63756163	3	3	52	1	0	0	0	0	1	0	0	0	11390	304	11	2	168	2	OTUB1	11	63756163	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10		63756163	71250353	22	5186											
SHANK2	22941	broad.mit.edu	37	chr11	70824380	70824381	+	In_Frame_Ins	INS	-	-	TTT													tgtttctcatcgagactggcINSttgtttatacacccgcttct					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		TTT	70824381	-	TTT	70824380	7	5	52	1	0	1	1	0	0	0	0	0	14363	797	28	0	5085	0	SHANK2	11	70824380	In_Frame_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	7068217	70824380	64182136	23	5187											
ROBO3	64221	broad.mit.edu	37	chr11	124739923	124739924	+	Frame_Shift_Ins	INS	-	-	G													tgcgtagcctccaacatggcINSgggagaacgggagagtgcgg					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	124739924	-	G	124739923	7	5	52	1	0	1	1	0	0	0	0	0	13610	768	27	0	739	0	ROBO3	11	124739923	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	53915543	124739923	10266593	24	5188											
DPPA3	359787	broad.mit.edu	37	chr12	7869647	7869648	+	Frame_Shift_Ins	INS	-	-	A													gaatgctagaatagggaatcINSaagacaccaagccacttcag					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	7869648	-	A	7869647	7	5	52	1	0	1	1	0	0	0	0	0	4772	827	29	0	468	0	DPPA3	12	7869647	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		7869647	125982248	25	5189											
RPAP3	79657	broad.mit.edu	37	chr12	48095315	48095315	+	Frame_Shift_Del	DEL	T	T	-													ttttgtgttttcctctctggTttttttggaagactctttag					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		-	48095315	T	-	48095315	7	5	52	1	0	1	0	1	0	0	0	0	13638	1725	60	0	1831	0	RPAP3	12	48095315	Frame_Shift_Del	DEL	T	TCGA-KN-8437-01A-11D-2310-10	40225668	48095315	85756580	26	5190											
AHNAK2	113146	mdanderson.org	37	chr14	105410382	105410382	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaacttgggcattttgaaTttgctgtctttggcagtcac	10	7	2	2	rs201817721		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	105410382	T	C	105410382	2	2	52	1	0	0	0	0	0	0	0	1	415	1490	52	4		4	AHNAK2	14	105410382	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10		105410382	1939158	27	5191											
LCTL	197021	ucsc.edu	37	chr15	66840924	66840924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgatctccgtaaccatttgCatgtgacttagcaagggctc	9	11	1	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	66840924	C	T	66840924	3	4	52	1	0	0	0	0	1	0	0	0	8756	710	25	4	99	4	LCTL	15	66840924	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10		66840924	35690468	28	5192											
CLUAP1	23059	hgsc.bcm.edu	37	chr16	3586166	3586166	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacatggaagatgatgatgaCgaggatgacgatttggaaga	15	3	0	6	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	3586166	C	T	3586166	2	4	52	1	0	0	0	0	0	0	0	1	3598	535	19	1		1	CLUAP1	16	3586166	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10		3586166	86768587	29	5193											
OTOA	146183	broad.mit.edu	37	chr16	21698797	21698797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccttgcagagccctggcGtgaaccgcagcctgtttctc	12	14	1	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	21698797	G	A	21698797	3	1	52	1	0	0	0	0	1	0	0	0	11381	1145	40	1	523	1	OTOA	16	21698797	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	18112631	21698797	68655956	30	5194											
ZNF668	79759	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	31073370	31073370	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cgctggtggcgacggaagctCgaggggtcggagaacatgcg	19	9	0	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	31073370	C	G	31073370	2	3	52	1	0	0	0	0	0	0	0	1	18180	871	31	5		5	ZNF668	16	31073370	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10	9374573	31073370	59281383	31	5195											
SLC2A4	6517	broad.mit.edu	37	chr17	7186903	7186903	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggccctctccgtggccatcTtttccgtgggcggcatgatt	13	13	2	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	7186903	T	C	7186903	3	2	52	1	0	0	0	0	1	0	0	0	14644	1609	56	2	272	2	SLC2A4	17	7186903	Missense_Mutation	SNP	T	TCGA-KN-8437-01A-11D-2310-10		7186903	74008307	32	5196											
TBC1D3	729873	mdanderson.org	37	chr17	36288278	36288278	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaacactgaggaaatgaagTtgaaaaaccccggaagatac	10	7	0	5	rs79200053	bycluster;byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	36288278	T	A	36288278	3	1	52	1	0	0	0	0	1	0	0	0	15721	1722	60	5	382	5	TBC1D3	17	36288278	Missense_Mutation	SNP	T	TCGA-KN-8437-01A-11D-2310-10	29101375	36288278	44906932	33	5197											
STXBP4	252983	broad.mit.edu	37	chr17	53077156	53077156	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaatactaatcccaaagAcctcatccactcccaaaaca	2	15	1	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	53077156	A	G	53077156	3	3	52	1	0	0	0	0	1	0	0	0	15455	275	10	2	465	2	STXBP4	17	53077156	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10	16788878	53077156	28118054	34	5198											
MFSD11	79157	hgsc.bcm.edu	37	chr17	74765928	74765928	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttattggactttctggcatTttcatcggcattggagaaat	9	7	2	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	74765928	T	C	74765928	2	2	52	1	0	0	0	0	0	0	0	1	9606	1829	64	4		4	MFSD11	17	74765928	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10	21688772	74765928	6429282	35	5199											
EIF4A3	9775	bcgsc.ca	37	chr17	78109803	78109803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctggacgatttcctacCgttcatcggcatctcatcaa	8	12	3	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	78109803	C	T	78109803	3	4	52	1	0	0	0	0	1	0	0	0	5065	666	23	1	24	1	EIF4A3	17	78109803	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	3343875	78109803	3085407	36	5200											
ZNF521	25925	ucsc.edu;mdanderson.org	37	chr18	22930910	22930911	+	Splice_Site	DNP	TC	TC	AA													cgcttgcttgcggcgagacaTcctaaaagcaaacagctgaa					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		AA	22930911	TC	AA	22930910	5	1	52	1	0	0	0	0	0	0	1	0	18070	1449	50	5	3962	5	ZNF521	18	22930910	Splice_Site	DNP	TC	TCGA-KN-8437-01A-11D-2310-10		22930910	55146338	37	5201	128	2									
ZNF521	25925	broad.mit.edu;hgsc.bcm.edu	37	chr18	22930911	22930911	+	Splice_Site	SNP	C	C	A													gcttgcttgcggcgagacatCctaaaagcaaacagctgaag					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	22930911	C	A	22930911	5	1	52	1	0	0	0	0	0	0	1	0	18070	869	30	5	3963	5	ZNF521	18	22930911	Splice_Site	SNP	C	TCGA-KN-8437-01A-11D-2310-10	1	22930911	55146337	38	5202	128	2									
BRD4	23476	mdanderson.org	37	chr19	15350594	15350594	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctcctccttcaccaccacGaggggctggggctggaccac	11	16	2	0	rs11669901	byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		A	15350594	G	A	15350594	2	1	52	1	0	0	0	0	0	0	0	1	1512	1045	37	1		1	BRD4	19	15350594	Silent	SNP	G	TCGA-KN-8437-01A-11D-2310-10		15350594	43778389	39	5203											
ZNF345	25850	hgsc.bcm.edu	37	chr19	37368304	37368304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttgaatcagcccttattcGgcatcacagaattcacacag	6	11	3	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	37368304	G	T	37368304	3	4	52	1	0	0	0	0	1	0	0	0	17964	1116	39	5	574	5	ZNF345	19	37368304	Missense_Mutation	SNP	G	TCGA-KN-8437-01A-11D-2310-10	22017710	37368304	21760679	40	5204											
PSG6	5675	mdanderson.org	37	chr19	43411778	43411778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgccaccatatcggtccCgtatttcacattgatagggt	10	10	1	1	rs707749	byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	43411778	C	T	43411778	3	4	52	1	0	0	0	0	1	0	0	0	12748	652	23	1	423	1	PSG6	19	43411778	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10	6043474	43411778	15717205	41	5205											
CBR1	873	broad.mit.edu	37	chr21	37443310	37443310	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaaatttctttggtAcccgagatgtgtgcacagaa	9	7	1	3	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		G	37443310	A	G	37443310	3	3	52	1	0	0	0	0	1	0	0	0	2733	391	14	2	358	2	CBR1	21	37443310	Missense_Mutation	SNP	A	TCGA-KN-8437-01A-11D-2310-10		37443310	10686585	42	5206											
PRODH	5625	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	18900771	18900771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccgctcccgatgggtgcCcttcatgaggctgctgttct	12	14	2	1	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	18900771	C	T	18900771	3	4	52	1	0	0	0	0	1	0	0	0	12637	623	22	3	86	3	PRODH	22	18900771	Missense_Mutation	SNP	C	TCGA-KN-8437-01A-11D-2310-10		18900771	32403795	43	5207											
MKL1	57591	mdanderson.org	37	chr22	40814636	40814636	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggttggtggctggggcCgccaggctggggttgaatgg	21	6	0	1	rs4821944	byfrequency	TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		T	40814636	C	T	40814636	2	4	52	1	0	0	0	0	0	0	0	1	9678	639	23	1		1	MKL1	22	40814636	Silent	SNP	C	TCGA-KN-8437-01A-11D-2310-10	21913865	40814636	10489930	44	5208											
ATRX	546	broad.mit.edu	37	chrX	76763910	76763911	+	Frame_Shift_Ins	INS	-	-	C													gtaatggtggtggctgcataINSccaccagccactggctgata					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	76763911	-	C	76763910	7	5	52	1	0	1	1	0	0	0	0	0	1212	378	14	0	84	0	ATRX	23	76763910	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10		76763910	78506650	45	5209											
TCEAL5	340543	mdanderson.org	37	chrX	102529084	102529084	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgctcagatgcctttcTtgtaagtcctcctgagagtc	8	12	3	2	novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	102529084	T	C	102529084	2	2	52	1	0	0	0	0	0	0	0	1	15778	1606	56	2		2	TCEAL5	23	102529084	Silent	SNP	T	TCGA-KN-8437-01A-11D-2310-10	25765174	102529084	52741476	46	5210											
RAB40A	142684	broad.mit.edu	37	chrX	102755467	102755468	+	Frame_Shift_Ins	INS	-	-	C													tatggtacaaaatcttccctINSgccccgacgtatcccagagc					novel		TCGA-KN-8437-01A-11D-2310-10	TCGA-KN-8437-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	345a06d6-fa5c-4674-a847-88a6b537cf3c	a1283c7d-6305-46d3-b518-47cb8b37ba18		C	102755468	-	C	102755467	7	5	52	1	0	1	1	0	0	0	0	0	13031	1580	55	0	619	0	RAB40A	23	102755467	Frame_Shift_Ins	INS	-	TCGA-KN-8437-01A-11D-2310-10	226383	102755467	52515093	47	5211											
PRDM2	7799	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	14105033	14105033	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcccctgcctgggagcCacagccagaaccagacgagc	11	18	0	2	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	14105033	C	T	14105033	3	4	53	1	0	0	0	0	1	0	0	0	12547	594	21	4	769	4	PRDM2	1	14105033	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10		14105033	235145588	1	5212											
KIF17	57576	ucsc.edu	37	chr1	20998493	20998493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagaagccgttatcttcgTcccagcaggactcacgcaga	9	14	2	2	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	20998493	T	C	20998493	3	2	53	1	0	0	0	0	1	0	0	0	8340	1667	58	2	445	2	KIF17	1	20998493	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	6893460	20998493	228252128	2	5213											
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34043016	34043016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaaagtggatggagccccCgggctgggtgctggtctggc	18	11	1	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	34043016	C	T	34043016	3	4	53	1	0	0	0	0	1	0	0	0	3976	652	23	1	3081	1	CSMD2	1	34043016	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	13044523	34043016	215207605	3	5214											
GPATCH4	54865	hgsc.bcm.edu	37	chr1	156565504	156565504	+	Frame_Shift_Del	DEL	T	T	-													tctgcctccttttctttttcTtttttttggggggcttgctc					novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		-	156565504	T	-	156565504	7	5	53	1	0	1	0	1	0	0	0	0	6650	1609	56	0	502	0	GPATCH4	1	156565504	Frame_Shift_Del	DEL	T	TCGA-KO-8403-01A-11D-2310-10	122522488	156565504	92685117	4	5215											
OR2L2	26246	mdanderson.org	37	chr1	248202412	248202412	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttttctacaccatcctcacCccaatgctcaaccccatcat	2	18	4	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	248202412	C	T	248202412	2	4	53	1	0	0	0	0	0	0	0	1	11086	610	22	3		3	OR2L2	1	248202412	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	91636908	248202412	1048209	5	5216											
SCN1A	6323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	166900204	166900204	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catcagtagctggcttatctAttatcacctctggcagaagc	8	11	4	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	166900204	A	T	166900204	3	4	53	1	0	0	0	0	1	0	0	0	14011	449	16	5	4075	5	SCN1A	2	166900204	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10		166900204	76299169	6	5217											
GPR155	151556	ucsc.edu	37	chr2	175346286	175346286	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatagggaatagtccagcTttgctaaatcgactatcagg	9	7	1	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	175346286	T	C	175346286	2	2	53	1	0	0	0	0	0	0	0	1	6717	1606	56	2		2	GPR155	2	175346286	Silent	SNP	T	TCGA-KO-8403-01A-11D-2310-10	8446082	175346286	67853087	7	5218											
ATG7	10533	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	11340174	11340174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taataggcaagaaataatggCggcagctacgggggatcctg	14	7	0	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	11340174	C	T	11340174	3	4	53	1	0	0	0	0	1	0	0	0	1105	768	27	1	7	1	ATG7	3	11340174	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10		11340174	186682256	8	5219											
NDUFAF3	25915	broad.mit.edu	37	chr3	49059954	49059954	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcgctctgctcccgcacTcggtggtgcagtggaacgtg	14	14	1	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	49059954	T	C	49059954	3	2	53	1	0	0	0	0	1	0	0	0	10355	1551	54	2	259	2	NDUFAF3	3	49059954	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	37719780	49059954	148962476	9	5220											
DNAH12	201625	broad.mit.edu	37	chr3	57431084	57431084	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcaaaaatccgtaagagtaGagggagatttctgctataag	10	5	2	3	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	57431084	G	T	57431084	2	4	53	1	0	0	0	0	0	0	0	1	4637	929	33	5		5	DNAH12	3	57431084	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	8371130	57431084	140591346	10	5221											
SIAH2	6478	bcgsc.ca	37	chr3	150460253	150460253	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgactgcatcatcacccagTcgacagcccctggcaagtta	8	14	2	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	150460253	T	C	150460253	3	2	53	1	0	0	0	0	1	0	0	0	14398	1667	58	2	328	2	SIAH2	3	150460253	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	93029169	150460253	47562177	11	5222											
MUC4	4585	mdanderson.org	37	chr3	195507817	195507817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggtgtcacctgtggatActgaggaaaggctggtgaca	17	6	1	2	rs200993341		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	195507817	A	G	195507817	3	3	53	1	0	0	0	0	1	0	0	0	10056	391	14	2		2	MUC4	3	195507817	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	45047564	195507817	2514613	12	5223											
FAM13A	10144	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	89668864	89668864	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgtggcttcaacactgGgctttattgctttatccacc	7	12	1	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	89668864	G	T	89668864	3	4	53	1	0	0	0	0	1	0	0	0	5495	1232	43	5	799	5	FAM13A	4	89668864	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		89668864	101485412	13	5224											
TRPC3	7222	mdanderson.org	37	chr4	122872719	122872719	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccgttgacgcccctccaGccccggcggcggcgctgcgg	14	21	0	1	rs1396082	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	122872719	G	A	122872719	2	1	53	1	0	0	0	0	0	0	0	1	16684	958	34	4		4	TRPC3	4	122872719	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	33203855	122872719	68281557	14	5225											
PCDHB3	56132	broad.mit.edu	37	chr5	140480872	140480872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaactcagcttaacgctcacCgcgctggacggcggctctcc	11	16	3	0	rs148121148		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	140480872	C	T	140480872	2	4	53	1	0	0	0	0	0	0	0	1	11622	639	23	1		1	PCDHB3	5	140480872	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		140480872	40434388	15	5226											
DIAPH1	1729	bcgsc.ca	37	chr5	140953097	140953097	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggagctgcacctctggctTataaagctttttgggggtta	12	9	1	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	140953097	T	C	140953097	3	2	53	1	0	0	0	0	1	0	0	0	4555	1763	61	4	1550	4	DIAPH1	5	140953097	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	472225	140953097	39962163	16	5227											
MXD3	83463	mdanderson.org	37	chr5	176734855	176734855	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccgcagccgctcccgctcGgccgcccctgccagcccccg	11	25	0	0	rs4568379	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	176734855	G	C	176734855	2	2	53	1	0	0	0	0	0	0	0	1	10078	1103	39	5		5	MXD3	5	176734855	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	35781758	176734855	4180405	17	5228											
BTNL8	79908	broad.mit.edu;bcgsc.ca	37	chr5	180377222	180377222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtatttcacattaaatccccGttttatcagcgtcttcccca	4	13	3	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	180377222	G	A	180377222	3	1	53	1	0	0	0	0	1	0	0	0	1576	1145	40	1	1367	1	BTNL8	5	180377222	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	3642367	180377222	538038	18	5229											
GLP1R	2740	ucsc.edu	37	chr6	39033549	39033549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggctgcagaaggacaacTccagcctgccctggagggac	13	13	1	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	39033549	T	C	39033549	3	2	53	1	0	0	0	0	1	0	0	0	6508	1551	54	2	360	2	GLP1R	6	39033549	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10		39033549	132081518	19	5230											
MANEA	79694	mdanderson.org	37	chr6	96054262	96054262	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaacttatgcattagatcGccagctgcctgtttcttaat	7	10	1	1	rs75510775	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	96054262	G	A	96054262	3	1	53	1	0	0	0	0	1	0	0	0	9298	1087	38	1	1384	1	MANEA	6	96054262	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	57020713	96054262	75060805	20	5231											
SERINC1	57515	broad.mit.edu	37	chr6	122768108	122768108	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtagattcatcacttgttAgagtcagtttattaacctga	7	6	3	3	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	122768108	A	G	122768108	3	3	53	1	0	0	0	0	1	0	0	0	14176	420	15	2	332	2	SERINC1	6	122768108	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	26713846	122768108	48346959	21	5232											
WIPF3	644150	broad.mit.edu	37	chr7	29924145	29924146	+	Frame_Shift_Ins	INS	-	-	C													aggccggtgcgcaggccttgINScccgccccgcctgcccctcc					novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	29924146	-	C	29924145	7	5	53	1	0	1	1	0	0	0	0	0	17475	1310	46	0	1049	0	WIPF3	7	29924145	Frame_Shift_Ins	INS	-	TCGA-KO-8403-01A-11D-2310-10		29924145	129214518	22	5233											
SLC39A4	55630	mdanderson.org	37	chr8	145641564	145641564	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcttccccgagggcctgttTccctttcaagtccaacaacg	9	15	1	0	rs2280839	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	145641564	T	G	145641564	3	3	53	1	0	0	0	0	1	0	0	0	14718	1783	62	5	1883	5	SLC39A4	8	145641564	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10		145641564	722458	23	5234											
ISCA1	81689	hgsc.bcm.edu;ucsc.edu	37	chr9	88897335	88897335	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctgcagcttcctcttgctCacagcccggacagttgcccg	11	16	2	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	88897335	C	A	88897335	2	1	53	1	0	0	0	0	0	0	0	1	7910	813	29	5		5	ISCA1	9	88897335	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		88897335	52316096	24	5235											
SIRT3	23410	broad.mit.edu;hgsc.bcm.edu	37	chr11	216703	216706	+	Frame_Shift_Del	DEL	TGTC	TGTC	-													ggggcagccatcatcctattTgtctggtccatcaagctgga					novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		-	216706	TGTC	-	216703	7	5	53	1	0	1	0	1	0	0	0	0	14437	1821	63	0	8	0	SIRT3	11	216703	Frame_Shift_Del	DEL	TGTC	TCGA-KO-8403-01A-11D-2310-10		216703	134789813	25	5236	129	2									
SIRT3	23410	bcgsc.ca	37	chr11	216704	216707	+	Frame_Shift_Del	DEL	TGTC	TGTC	-													gggcagccatcatcctatttGtctggtccatcaagctggaa					novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		-	216707	TGTC	-	216704	7	5	53	1	0	1	0	1	0	0	0	0	14437	1368	48	0	9	0	SIRT3	11	216704	Frame_Shift_Del	DEL	TGTC	TCGA-KO-8403-01A-11D-2310-10	1	216704	134789812	26	5237	129	2									
MUC6	4588	mdanderson.org	37	chr11	1018459	1018459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caaggaggtggagaaaggtgGaacgtgagtgggaagtgtgg	21	2	0	2	rs199760270		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	1018459	G	T	1018459	3	4	53	1	0	0	0	0	1	0	0	0	10058	1174	41	5	2989	5	MUC6	11	1018459	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	801755	1018459	133988057	27	5238			1	52		2	2	15	N	G_A	2.62298e-05
MUC6	4588	mdanderson.org	37	chr11	1018473	1018473	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtggaacgtgagtgggaAgtgtggtctcagggtgtgat	19	3	1	2	rs112923701		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	1018473	A	T	1018473	3	4	53	1	0	0	0	0	1	0	0	0	10058	72	3	5	3003	5	MUC6	11	1018473	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	14	1018473	133988043	28	5239			1	52		2	2	15	N	G_A	2.62298e-05
MUC2	4583	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	1075670	1075670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcagaacccgaaaccaCggccacaacgtctgcagcac	11	15	1	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	1075670	C	T	1075670	2	4	53	1	0	0	0	0	0	0	0	1	10053	535	19	1		1	MUC2	11	1075670	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	57197	1075670	133930846	29	5240											
ZDHHC13	54503	broad.mit.edu	37	chr11	19170858	19170858	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacacatgcctattatagcaTatctcatctcaaagggacag	6	10	2	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	19170858	T	C	19170858	3	2	53	1	0	0	0	0	1	0	0	0	17708	1406	49	4	517	4	ZDHHC13	11	19170858	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	18095188	19170858	115835658	30	5241											
DSCAML1	57453	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	117307845	117307845	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcgactcactgccatcGtagtccagggtggcgaactg	12	13	1	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	117307845	G	A	117307845	2	1	53	1	0	0	0	0	0	0	0	1	4806	1140	40	1		1	DSCAML1	11	117307845	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	98136987	117307845	17698671	31	5242											
CHD4	1108	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	6702730	6702730	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaactcccgctcccagTtgatgatggtagaaagaggg	11	9	1	4	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	6702730	T	C	6702730	3	2	53	1	0	0	0	0	1	0	0	0	3356	1725	60	2	3472	2	CHD4	12	6702730	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10		6702730	127149165	32	5243											
DPPA3	359787	broad.mit.edu	37	chr12	7868798	7868798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttttcccatgaagcatgAaagaagaccaacaaacaagg	7	8	0	4	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	7868798	A	G	7868798	3	3	53	1	0	0	0	0	1	0	0	0	4772	246	9	4	342	4	DPPA3	12	7868798	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	1166068	7868798	125983097	33	5244											
HNF1A	6927	broad.mit.edu	37	chr12	121426736	121426736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactggcctcaaccagtccCacctgtcccaacacctcaac	4	21	2	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	121426736	C	T	121426736	3	4	53	1	0	0	0	0	1	0	0	0	7309	594	21	4	433	4	HNF1A	12	121426736	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	113557938	121426736	12425159	34	5245											
KNTC1	9735	broad.mit.edu	37	chr12	123075242	123075242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtttgaaaatctctggaAgctcatagataaagcatggc	10	6	2	2	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	123075242	A	G	123075242	3	3	53	1	0	0	0	0	1	0	0	0	8489	72	3	2	4246	2	KNTC1	12	123075242	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	1648506	123075242	10776653	35	5246											
POTEM	641455	broad.mit.edu	37	chr14	20019957	20019957	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtgtcttcatagcagaGtcgtcgtggtctccagaagt	12	9	3	3	rs28578761		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	20019957	G	A	20019957	2	1	53	1	0	0	0	0	0	0	0	1	12348	1020	36	4		4	POTEM	14	20019957	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10		20019957	87329583	36	5247											
SIX4	51804	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	61186805	61186805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtagaccccagtatgtcagTcatggatataccattgctca	8	10	3	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	61186805	T	A	61186805	3	1	53	1	0	0	0	0	1	0	0	0	14447	1667	58	5	1131	5	SIX4	14	61186805	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	41166848	61186805	46162735	37	5248											
FAM98B	283742	broad.mit.edu	37	chr15	38776624	38776626	+	In_Frame_Del	DEL	AGA	AGA	-													gtggtgggggtgggggtgggAgaggtggctgggggggtgga					novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		-	38776626	AGA	-	38776624	7	5	53	1	0	1	0	1	0	0	0	0	5706	296	11	0	1192	0	FAM98B	15	38776624	In_Frame_Del	DEL	AGA	TCGA-KO-8403-01A-11D-2310-10		38776624	63754768	38	5249											
SPTBN5	51332	mdanderson.org	37	chr15	42159290	42159290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcccgcacccgggggcgcCggagcgtcttcagccgctca	15	17	3	0	rs2290553	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	42159290	C	T	42159290	3	4	53	1	0	0	0	0	1	0	0	0	15222	652	23	1	4809	1	SPTBN5	15	42159290	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	3382666	42159290	60372102	39	5250											
MTFMT	123263	hgsc.bcm.edu	37	chr15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgcagcgcctcgcgggcgaActggtccgtgccgaagaaga	15	14	0	2	rs188718836	by1000genomes	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	65321780	A	T	65321780	3	4	53	1	0	0	0	0	1	0	0	0	10002	43	2	5	1033	5	MTFMT	15	65321780	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	23162490	65321780	37209612	40	5251											
IL4R	3566	hgsc.bcm.edu	37	chr16	27374117	27374117	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgacccagagtccagacaacCtgacttgcacagagacgccc	9	16	0	4	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	27374117	C	T	27374117	2	4	53	1	0	0	0	0	0	0	0	1	7759	680	24	4		4	IL4R	16	27374117	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		27374117	62980636	41	5252											
CLEC18B	497190	mdanderson.org	37	chr16	74452114	74452114	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacttgcagggtgcgccacAggccggacgccaggctcggg	16	15	0	0	rs62052577		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	74452114	A	G	74452114	3	3	53	1	0	0	0	0	1	0	0	0	3532	188	7	2	1112	2	CLEC18B	16	74452114	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	47077997	74452114	15902639	42	5253											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7577139	7577139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgcacctcaaagctgttccGtcccagtagattaccactac	6	15	1	1	rs55832599		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	7577139	G	A	7577139	3	1	53	1	0	0	0	0	1	0	0	0	16486	1144	40	1	487	1	TP53	17	7577139	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		7577139	73618071	43	5254											
TP53	7157	broad.mit.edu	37	chr17	7577532	7577532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgatgatggtgaggatgGgcctccggttcatgccgccc	16	10	1	3	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	7577532	G	A	7577532	3	1	53	1	0	0	0	0	1	0	0	0	16486	1232	43	3	541	3	TP53	17	7577532	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	393	7577532	73617678	44	5255											
ARL16	339231	mdanderson.org	37	chr17	79650828	79650828	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtagctcggcgccgcggcTcaaggcccgcccaccggcca	13	20	1	0	rs8066889	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		G	79650828	T	G	79650828	3	3	53	1	0	0	0	0	1	0	0	0	934	1551	54	5	585	5	ARL16	17	79650828	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	72073296	79650828	1544382	45	5256											
TCEB3B	51224	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	44561017	44561017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccctggcagcctggacacaGcagaggcccgccctgagccg	14	17	0	2	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	44561017	G	T	44561017	3	4	53	1	0	0	0	0	1	0	0	0	15786	962	34	5	1646	5	TCEB3B	18	44561017	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		44561017	33516231	46	5257											
MUC16	94025	mdanderson.org	37	chr19	9012840	9012840	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgatgcatgtcctcctcGtactgcaggttggtgatggt	15	8	0	2	rs4992692		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	9012840	G	A	9012840	2	1	53	1	0	0	0	0	0	0	0	1	10051	1140	40	1		1	MUC16	19	9012840	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10		9012840	50116143	47	5258											
ZNF846	162993	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	9869291	9869291	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtaaaaactatgaggaaaGttctttcttaaggcttttcc	7	6	2	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	9869291	G	C	9869291	3	2	53	1	0	0	0	0	1	0	0	0	18295	1020	36	5	1143	5	ZNF846	19	9869291	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10	856451	9869291	49259692	48	5259											
HRC	3270	broad.mit.edu;hgsc.bcm.edu	37	chr19	49656872	49656872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttcctcctcctcctcCtccttgtcttcctcttcttc	1	20	5	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	49656872	C	T	49656872	2	4	53	1	0	0	0	0	0	0	0	1	7410	680	24	4		4	HRC	19	49656872	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	39787581	49656872	9472111	49	5260											
PTOV1	53635	broad.mit.edu	37	chr19	50360994	50360996	+	In_Frame_Del	DEL	CAA	CAA	-													tcaggcccagtccagatcgtCaacaacaagtttctggcatg					novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		-	50360996	CAA	-	50360994	7	5	53	1	0	1	0	1	0	0	0	0	12859	813	29	0	785	0	PTOV1	19	50360994	In_Frame_Del	DEL	CAA	TCGA-KO-8403-01A-11D-2310-10	704122	50360994	8767989	50	5261											
SIGLEC10	89790	mdanderson.org	37	chr19	51919235	51919235	+	Missense_Mutation	SNP	T	T	C													agcgccctgaatccccagccTtcaccccgggcagctccagc					rs201089294	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	51919235	T	C	51919235	3	2	53	1	0	0	0	0	1	0	0	0	14404	1609	56	2	1180	2	SIGLEC10	19	51919235	Missense_Mutation	SNP	T	TCGA-KO-8403-01A-11D-2310-10	1558241	51919235	7209748	51	5262	130	2									
SIGLEC10	89790	mdanderson.org	37	chr19	51919243	51919243	+	Silent	SNP	G	G	A													gaatccccagccttcaccccGggcagctccagccccagggg					rs199660336	byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	51919243	G	A	51919243	2	1	53	1	0	0	0	0	0	0	0	1	14404	1103	39	1		1	SIGLEC10	19	51919243	Silent	SNP	G	TCGA-KO-8403-01A-11D-2310-10	8	51919243	7209740	52	5263	130	2									
ZNF468	90333	ucsc.edu	37	chr19	53352380	53352380	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taattctccagcatcacgtcCctgtataaagtcctctgagc	6	13	3	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	53352380	C	T	53352380	2	4	53	1	0	0	0	0	0	0	0	1	18033	622	22	3		3	ZNF468	19	53352380	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10	1433137	53352380	5776603	53	5264											
ZNF419	79744	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	58004570	58004570	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaaagcctttggtcagaaAtatttacttgttcagcacca	9	8	2	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	58004570	A	C	58004570	3	2	53	1	0	0	0	0	1	0	0	0	18001	98	4	5	666	5	ZNF419	19	58004570	Missense_Mutation	SNP	A	TCGA-KO-8403-01A-11D-2310-10	4652190	58004570	1124413	54	5265											
ZNF497	162968	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	58868487	58868487	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgagctgcgagtgcgcgCggaaggccttgccgcactcc	16	13	0	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	58868487	C	T	58868487	3	4	53	1	0	0	0	0	1	0	0	0	18051	768	27	1	985	1	ZNF497	19	58868487	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	863917	58868487	260496	55	5266											
SIRPB1	10326	broad.mit.edu	37	chr20	1558987	1558987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccacgctgtactcaccgcGcacagacagctcagtgcctg	10	17	2	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	1558987	G	A	1558987	3	1	53	1	0	0	0	0	1	0	0	0	14431	1087	38	1	782	1	SIRPB1	20	1558987	Missense_Mutation	SNP	G	TCGA-KO-8403-01A-11D-2310-10		1558987	61466533	56	5267											
SYCP2	10388	bcgsc.ca	37	chr20	58461850	58461850	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttggcttatcaaggattCtgctacattggtaaattctt	8	6	3	0	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	58461850	C	T	58461850	3	4	53	1	0	0	0	0	1	0	0	0	15533	922	32	4	2272	4	SYCP2	20	58461850	Missense_Mutation	SNP	C	TCGA-KO-8403-01A-11D-2310-10	56902863	58461850	4563670	57	5268											
YDJC	150223	hgsc.bcm.edu	37	chr22	21982830	21982830	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcctgggcaagctgggcCcgcagcgtgggcgcggtgag	18	13	0	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		T	21982830	C	T	21982830	2	4	53	1	0	0	0	0	0	0	0	1	17577	610	22	3		3	YDJC	22	21982830	Silent	SNP	C	TCGA-KO-8403-01A-11D-2310-10		21982830	29321736	58	5269											
C22orf28	51493	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	32797733	32797733	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actggaaacgtgtgctcttaCttggcattcattgggatgac	11	8	2	1	novel		TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		A	32797733	C	A	32797733	5	1	53	1	0	0	0	0	0	0	1	0	2160	579	20	5	1051	5	C22orf28	22	32797733	Splice_Site	SNP	C	TCGA-KO-8403-01A-11D-2310-10	10814903	32797733	18506833	59	5270											
TRIOBP	11078	mdanderson.org	37	chr22	38120429	38120429	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaatagagccacacgagaTaaccccagaacatcctgtgc	7	15	0	3	rs6000868	bycluster;byfrequency	TCGA-KO-8403-01A-11D-2310-10	TCGA-KO-8403-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1072ce9e-3d2b-46e5-bd68-8029383f351b	3fe26d59-6847-4eed-a8d0-6bd2c5ea355b		C	38120429	T	C	38120429	2	2	53	1	0	0	0	0	0	0	0	1	16658	1403	49	4		4	TRIOBP	22	38120429	Silent	SNP	T	TCGA-KO-8403-01A-11D-2310-10	5322696	38120429	13184137	60	5271											
SCNN1D	6339	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	1223338	1223338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacgaggtgcaccggctcgGgagcccctacggccactgca	15	15	0	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	1223338	G	A	1223338	3	1	54	1	0	0	0	0	1	0	0	0	14026	1232	43	3	1323	3	SCNN1D	1	1223338	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10		1223338	248027283	1	5272											
ATAD3C	219293	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	1389871	1389871	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcttgaggcgctgcggcaCcccatccaggtagcggcgca	15	14	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	1389871	C	T	1389871	2	4	54	1	0	0	0	0	0	0	0	1	1079	506	18	3		3	ATAD3C	1	1389871	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	166533	1389871	247860750	2	5273											
DFFA	1676	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	10527276	10527276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctctgataggaggatgaTgctggacagatcttctttca	10	9	4	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	10527276	T	C	10527276	3	2	54	1	0	0	0	0	1	0	0	0	4489	1464	51	4	623	4	DFFA	1	10527276	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	9137405	10527276	238723345	3	5274											
PPT1	5538	broad.mit.edu	37	chr1	40562824	40562825	+	Frame_Shift_Ins	INS	-	-	G													ccaacggcagcggcgccggcINSgggtccagatgctgcagcgc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	40562825	-	G	40562824	7	5	54	1	0	1	1	0	0	0	0	0	12496	755	27	0	869	0	PPT1	1	40562824	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	30035548	40562824	208687797	4	5275											
SGIP1	84251	mdanderson.org;bcgsc.ca	37	chr1	67154849	67154849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtgcatcatcccctgctcGaccagccactcctttggttc	8	16	1	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	67154849	G	A	67154849	3	1	54	1	0	0	0	0	1	0	0	0	14303	1058	37	1	1396	1	SGIP1	1	67154849	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	26592025	67154849	182095772	5	5276											
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77334277	77334279	+	In_Frame_Del	DEL	GCA	GCA	-													ggccagaaggagcggcccccGcagcagcagcagcagcagca					rs113832855	alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	77334279	GCA	-	77334277	7	5	54	1	0	1	0	1	0	0	0	0	15327	1074	38	0	117	0	ST6GALNAC5	1	77334277	In_Frame_Del	DEL	GCA	TCGA-KO-8404-01A-11D-2310-10	10179428	77334277	171916344	6	5277											
ARHGAP29	9411	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	94639723	94639723	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtttataaaatgttgtcCaatgttgaggctgcagtgtt	12	4	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	94639723	C	T	94639723	4	4	54	1	0	0	0	0	0	1	0	0	880	595	21	4	301	4	ARHGAP29	1	94639723	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	17305446	94639723	154610898	7	5278											
IGSF3	3321	mdanderson.org	37	chr1	117158748	117158748	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaaagtattgcttatcAgtgctgggtgtgtggcattc	11	9	1	0	rs199696016		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	117158748	A	G	117158748	2	3	54	1	0	0	0	0	0	0	0	1	7662	175	7	2		2	IGSF3	1	117158748	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	22519025	117158748	132091873	8	5279											
NBPF10	100132406	mdanderson.org	37	chr1	145302775	145302775	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaggccctcctcactccgTatgagccggacaagtcccag	9	17	1	1	rs71241610		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	145302775	T	G	145302775	3	3	54	1	0	0	0	0	1	0	0	0	10271	1638	57	5	1243	5	NBPF10	1	145302775	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	28144027	145302775	103947846	9	5280											
APH1A	51107	broad.mit.edu;mdanderson.org	37	chr1	150240152	150240152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggagatgggtgatcttcCgtcctcactcagcgatgcta	12	10	3	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	150240152	C	T	150240152	3	4	54	1	0	0	0	0	1	0	0	0	773	661	23	1	506	1	APH1A	1	150240152	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4937377	150240152	99010469	10	5281											
HRNR	388697	mdanderson.org	37	chr1	152192163	152192163	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agagccctgttggccatagcGagaagactgacttgagccag	13	10	0	5	rs61814943	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	152192163	G	T	152192163	3	4	54	1	0	0	0	0	1	0	0	0	7417	1058	37	5	6614	5	HRNR	1	152192163	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1952011	152192163	97058458	11	5282											
MUC1	4582	broad.mit.edu	37	chr1	155160853	155160854	+	In_Frame_Ins	INS	-	-	GGG													cttggtgctatggctggcaaINSgggtggtaggagtatcagag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		GGG	155160854	-	GGG	155160853	7	5	54	1	0	1	1	0	0	0	0	0	10048	87	3	0		0	MUC1	1	155160853	In_Frame_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	2968690	155160853	94089768	12	5283											
DNM3	26052	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr1	172037991	172037991	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagactctgcgaggaaacGgaaaggattgttgctaacca	11	10	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	172037991	G	A	172037991	2	1	54	1	0	0	0	0	0	0	0	1	4710	1103	39	1		1	DNM3	1	172037991	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	16877138	172037991	77212630	13	5284											
ABCG8	64241	broad.mit.edu	37	chr2	44102406	44102407	+	Frame_Shift_Ins	INS	-	-	G													cacttcctgctggtgtggctINSggtggtcttctgttgcagga					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	44102407	-	G	44102406	7	5	54	1	0	1	1	0	0	0	0	0	72	1580	55	0	1652	0	ABCG8	2	44102406	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10		44102406	199096967	14	5285											
LRPPRC	10128	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	44139675	44139675	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatgttttgctcttttgcAttcaggaaaatatcatatgc	6	7	3	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	44139675	A	T	44139675	3	4	54	1	0	0	0	0	1	0	0	0	9037	214	8	5	1049	5	LRPPRC	2	44139675	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	37269	44139675	199059698	15	5286											
ANKRD36B	57730	broad.mit.edu	37	chr2	98129746	98129746	+	Frame_Shift_Del	DEL	G	G	-													ctatcctatattgctcttctGttattcttaacttttcccta					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	98129746	G	-	98129746	7	5	54	1	0	1	0	1	0	0	0	0	666	1377	48	0	1383	0	ANKRD36B	2	98129746	Frame_Shift_Del	DEL	G	TCGA-KO-8404-01A-11D-2310-10	53990071	98129746	145069627	16	5287											
IL1RL1	9173	broad.mit.edu	37	chr2	102959759	102959760	+	Frame_Shift_Ins	INS	-	-	G													gggctggcttgtctagacatINSggttttaagaatagctgacg					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	102959760	-	G	102959759	7	5	54	1	0	1	1	0	0	0	0	0	7724	1464	51	0	880	0	IL1RL1	2	102959759	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	4830013	102959759	140239614	17	5288											
RGPD4	285190	broad.mit.edu	37	chr2	108487353	108487354	+	Frame_Shift_Ins	INS	-	-	A													ccgtggtgtgatttttggccINSaaacaagtagcacttttaca					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	108487354	-	A	108487353	7	5	54	1	0	1	1	0	0	0	0	0	13380	595	21	0	2971	0	RGPD4	2	108487353	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	5527594	108487353	134712020	18	5289											
AOX1	316	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	201462175	201462175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctctgtatggtgctgccGtcaccacagtagaaggcata	11	10	2	1	rs200659056	alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	201462175	G	A	201462175	3	1	54	1	0	0	0	0	1	0	0	0	731	1145	40	1	270	1	AOX1	2	201462175	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	92974822	201462175	41737198	19	5290											
STRADB	55437	mdanderson.org	37	chr2	202344886	202344886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgatgaaaaagactcataCtgggaattctagggctgcca	10	9	2	3	rs146098224		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	202344886	C	T	202344886	2	4	54	1	0	0	0	0	0	0	0	1	15425	576	20	4		4	STRADB	2	202344886	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	882711	202344886	40854487	20	5291											
PRKAG3	53632	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	219695480	219695480	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctcaccttccccctgaCctggtggctccccttcctcc	7	21	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	219695480	C	A	219695480	3	1	54	1	0	0	0	0	1	0	0	0	12591	507	18	5	1295	5	PRKAG3	2	219695480	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	17350594	219695480	23503893	21	5292											
ABHD14A	25864	broad.mit.edu	37	chr3	52014930	52014930	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagctccgccacctgcccAaccactctgtggtgaagcta	10	16	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	52014930	A	C	52014930	3	2	54	1	0	0	0	0	1	0	0	0	79	130	5	5	730	5	ABHD14A	3	52014930	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10		52014930	146007500	22	5293											
SLC15A2	6565	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	121659851	121659851	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gagaccaagaagacaaaactCtgatgactccctagattctg	8	10	2	6	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	121659851	C	A	121659851	2	1	54	1	0	0	0	0	0	0	0	1	14497	900	32	5		5	SLC15A2	3	121659851	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	69644921	121659851	76362579	23	5294											
FAM162A	26355	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	122123174	122123174	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcctcatatggtcaggtcGcttcaaaaaggaagatgaaa	10	7	3	2	rs149572114	by1000genomes;alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	122123174	G	A	122123174	3	1	54	1	0	0	0	0	1	0	0	0	5517	1087	38	1	237	1	FAM162A	3	122123174	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	463323	122123174	75899256	24	5295											
HEG1	57493	mdanderson.org	37	chr3	124732419	124732419	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccctgaagaagaagaAgaggaggaggaggaagagga	20	3	0	6	rs202026679		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	124732419	A	G	124732419	2	3	54	1	0	0	0	0	0	0	0	1	7102	59	3	2		2	HEG1	3	124732419	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	2609245	124732419	73290011	25	5296											
KLF15	28999	broad.mit.edu	37	chr3	126070866	126070867	+	Frame_Shift_Ins	INS	-	-	G													ggcccatgaggagaccggcaINSgggccaggccccaggggtcc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	126070867	-	G	126070866	7	5	54	1	0	1	1	0	0	0	0	0	8404	175	7	0	358	0	KLF15	3	126070866	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	1338447	126070866	71951564	26	5297											
COL6A5	256076	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	130098678	130098678	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgatgctgcgctgaaccttcGactggaggatgtaaacgtgt	13	8	0	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	130098678	G	C	130098678	3	2	54	1	0	0	0	0	1	0	0	0	3731	1058	37	5	1095	5	COL6A5	3	130098678	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	4027812	130098678	67923752	27	5298											
WWTR1	25937	broad.mit.edu;bcgsc.ca	37	chr3	149245708	149245708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgacagcagcctgaactgGggcaagagtctcagcttcca	12	11	1	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	149245708	G	A	149245708	3	1	54	1	0	0	0	0	1	0	0	0	17523	1232	43	3	394	3	WWTR1	3	149245708	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	19147030	149245708	48776722	28	5299											
HTR3E	285242	broad.mit.edu;mdanderson.org	37	chr3	183824286	183824287	+	Missense_Mutation	DNP	GC	GC	TG													gaggtatcagcagggcagatGccgggccctgcggaggcaga					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		TG	183824287	GC	TG	183824286	3	4	54	1	0	0	0	0	1	0	0	0	7509	1319	46	5	1251	5	HTR3E	3	183824286	Missense_Mutation	DNP	GC	TCGA-KO-8404-01A-11D-2310-10	34578578	183824286	14198144	29	5300											
MUC4	4585	broad.mit.edu;mdanderson.org	37	chr3	195505819	195505819	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgctgaggaagtgtcggtgAcaggaagaggggtggcgtga	20	4	0	4	rs425588	alternate_allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	195505819	A	T	195505819	3	4	54	1	0	0	0	0	1	0	0	0	10056	275	10	5		5	MUC4	3	195505819	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	11681533	195505819	2516611	30	5301											
MUC4	4585	mdanderson.org	37	chr3	195515069	195515069	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgtgacctgtggatgctgAggaagtgtcggtgacaggaa	18	6	0	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	195515069	A	C	195515069	3	2	54	1	0	0	0	0	1	0	0	0	10056	304	11	5		5	MUC4	3	195515069	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	9250	195515069	2507361	31	5302											
TMEM175	84286	bcgsc.ca	37	chr4	951677	951677	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cggcagcctcgtggccgcccTgagtgcgaccgggccgcgct	16	17	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	951677	T	A	951677	3	1	54	1	0	0	0	0	1	0	0	0	16195	1580	55	5	946	5	TMEM175	4	951677	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10		951677	190202599	32	5303											
OTOP1	133060	mdanderson.org	37	chr4	4190576	4190577	+	Missense_Mutation	DNP	CG	CG	GC													gggaggcagctgcgtgcattCgatagaaaatagaaaaaggc					rs200368405		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		GC	4190577	CG	GC	4190576	3	3	54	1	0	0	0	0	1	0	0	0	11384	884	31	5	49	5	OTOP1	4	4190576	Missense_Mutation	DNP	CG	TCGA-KO-8404-01A-11D-2310-10	3238899	4190576	186963700	33	5304											
NCAPG	64151	broad.mit.edu	37	chr4	17844972	17844973	+	Frame_Shift_Ins	INS	-	-	A													gaaatgaagatgagactaccINSaagacgagccaaaaccgcag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	17844973	-	A	17844972	7	5	54	1	0	1	1	0	0	0	0	0	10286	594	21	0	3054	0	NCAPG	4	17844972	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	13654396	17844972	173309304	34	5305											
UGT2A3	79799	broad.mit.edu;mdanderson.org	37	chr4	69795705	69795705	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgatcgcaggtgcttggcTcctttgtggcgcatgacaaa	13	10	0	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	69795705	T	G	69795705	2	3	54	1	0	0	0	0	0	0	0	1	17061	1538	54	5		5	UGT2A3	4	69795705	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10	51950733	69795705	121358571	35	5306											
FAM190A	401145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	91229575	91229575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtccacagttcctctccttCcagcactaactcaagctcag	5	16	3	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	91229575	C	T	91229575	3	4	54	1	0	0	0	0	1	0	0	0	5566	855	30	3	142	3	FAM190A	4	91229575	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	21433870	91229575	99924701	36	5307											
TTC29	83894	mdanderson.org;bcgsc.ca	37	chr4	147795877	147795877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccacccaccttctttggCtatttcagaagcttttatta	4	11	2	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	147795877	C	T	147795877	3	4	54	1	0	0	0	0	1	0	0	0	16802	797	28	4	665	4	TTC29	4	147795877	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	56566302	147795877	43358399	37	5308											
PAPD7	11044	mdanderson.org	37	chr5	6753008	6753008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtttactatacctccacCgaccctaggggttgctcctg	9	14	0	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	6753008	C	T	6753008	3	4	54	1	0	0	0	0	1	0	0	0	11505	652	23	1	1334	1	PAPD7	5	6753008	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		6753008	174162252	38	5309											
OCLN	100506658	broad.mit.edu	37	chr5	68840857	68840857	+	Frame_Shift_Del	DEL	A	A	-													cctgcaaagggaagagcaggAaggtcaaagagaacagagca					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	68840857	A	-	68840857	7	5	54	1	0	1	0	1	0	0	0	0	10899	233	9	0	1182	0	OCLN	5	68840857	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	62087849	68840857	112074403	39	5310											
CAMK4	814	broad.mit.edu	37	chr5	110560256	110560257	+	Frame_Shift_Ins	INS	-	-	G													ccagtgcggccccggggaccINSgcgagcctcgtcccggatta					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	110560257	-	G	110560256	7	5	54	1	0	1	1	0	0	0	0	0	2630	639	23	0	77	0	CAMK4	5	110560256	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	41719399	110560256	70355004	40	5311											
SEMA6A	57556	broad.mit.edu	37	chr5	115782974	115782975	+	Frame_Shift_Ins	INS	-	-	G													accacgctggggatgtggctINSgggggaggcccgcaggggca					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	115782975	-	G	115782974	7	5	54	1	0	1	1	0	0	0	0	0	14136	1580	55	0	668	0	SEMA6A	5	115782974	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	5222718	115782974	65132286	41	5312											
PCDHB10	56126	mdanderson.org	37	chr5	140573473	140573473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtcaatgacaacgcccccGccttcacccaaacctcctac	4	20	2	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	140573473	G	A	140573473	3	1	54	1	0	0	0	0	1	0	0	0	11614	1087	38	1	1350	1	PCDHB10	5	140573473	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	24790499	140573473	40341787	42	5313											
GLRA1	2741	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	151202298	151202298	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagtagaacatgttgaaaAtgaggaaggccatggggaag	14	5	0	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	151202298	A	C	151202298	3	2	54	1	0	0	0	0	1	0	0	0	6510	101	4	5	67	5	GLRA1	5	151202298	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	10628825	151202298	29712962	43	5314											
OR2B2	81697	bcgsc.ca	37	chr6	27879484	27879484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacgggtattagaaggaatAgcacactgatgaagaatagt	11	5	1	4	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	27879484	A	G	27879484	3	3	54	1	0	0	0	0	1	0	0	0	11068	420	15	2	463	2	OR2B2	6	27879484	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10		27879484	143235583	44	5315											
SCAND3	114821	hgsc.bcm.edu;ucsc.edu	37	chr6	28542931	28542931	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctaaatgcactttcacatggAgtctgttgcatgcttctgtg	9	9	3	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	28542931	A	T	28542931	2	4	54	1	0	0	0	0	0	0	0	1	13972	291	11	5		5	SCAND3	6	28542931	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	663447	28542931	142572136	45	5316											
CCHCR1	54535	broad.mit.edu;hgsc.bcm.edu	37	chr6	31122478	31122478	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgaggtctcccgcaggAgccggacctcctcctccagc	12	18	1	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	31122478	A	G	31122478	3	3	54	1	0	0	0	0	1	0	0	0	2904	304	11	2	2079	2	CCHCR1	6	31122478	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	2579547	31122478	139992589	46	5317											
HLA-DRB5	3127	mdanderson.org	37	chr6	32487390	32487390	+	Missense_Mutation	SNP	T	T	G													gaggttgtggtgctgcagggTctgggtccttgcaggataca					rs77180119	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	32487390	T	G	32487390	3	3	54	1	0	0	0	0	1	0	0	0	7267	1667	58	5	407	5	HLA-DRB5	6	32487390	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	1364912	32487390	138627677	47	5318	131	2									
HLA-DRB5	3127	mdanderson.org	37	chr6	32487398	32487398	+	Missense_Mutation	SNP	C	C	T													ggtgctgcagggtctgggtcCttgcaggatacacagtcacc					rs115198947	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	32487398	C	T	32487398	3	4	54	1	0	0	0	0	1	0	0	0	7267	681	24	4	415	4	HLA-DRB5	6	32487398	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	8	32487398	138627669	48	5319	131	2									
HLA-DRB5	3127	mdanderson.org	37	chr6	32497970	32497970	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtcagctttgccatgTaggaacctccagggagcttc	10	12	2	0	rs201644181		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	32497970	T	C	32497970	3	2	54	1	0	0	0	0	1	0	0	0	7267	1638	57	2	792	2	HLA-DRB5	6	32497970	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	10572	32497970	138617097	49	5320											
SYNGAP1	8831	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	33405554	33405554	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctggatgacatgctgtAtgcacgcaccacctccaagc	9	15	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	33405554	A	C	33405554	3	2	54	1	0	0	0	0	1	0	0	0	15548	449	16	5	902	5	SYNGAP1	6	33405554	Missense_Mutation	SNP	A	TCGA-KO-8404-01A-11D-2310-10	907584	33405554	137709513	50	5321											
COL19A1	1310	broad.mit.edu;mdanderson.org	37	chr6	70873233	70873233	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttagttttgtgttttacAgggcttaatgggaagaactg	11	4	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	70873233	A	T	70873233	5	4	54	1	0	0	0	0	0	0	1	0	3705	202	7	5	2483	5	COL19A1	6	70873233	Splice_Site	SNP	A	TCGA-KO-8404-01A-11D-2310-10	37467679	70873233	100241834	51	5322											
TRIM50	135892	mdanderson.org	37	chr7	72734197	72734197	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgatgagctcatccaccttTttctgctcctgcttcagctc	7	15	3	1	rs3108461		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	72734197	T	C	72734197	2	2	54	1	0	0	0	0	0	0	0	1	16631	1838	64	4		4	TRIM50	7	72734197	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10		72734197	86404466	52	5323											
NCF1	653361	mdanderson.org	37	chr7	74197914	74197914	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcgaggctggatcccagcGtccttcctcgagcccctgga	12	15	0	0	rs1637127	bycluster	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	74197914	G	A	74197914	2	1	54	1	0	0	0	0	0	0	0	1	10295	1132	40	1		1	NCF1	7	74197914	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1463717	74197914	84940749	53	5324											
FGL2	10875	broad.mit.edu;mdanderson.org	37	chr7	76828642	76828642	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagattcagcttctccaggcGaccatgaagtacattgatct	8	10	3	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	76828642	G	A	76828642	3	1	54	1	0	0	0	0	1	0	0	0	5922	1058	37	1	858	1	FGL2	7	76828642	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	2630728	76828642	82310021	54	5325											
LMTK2	22853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	97820153	97820153	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagagagacacaaaactccCgaagccccagctggagcagc	11	13	0	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	97820153	C	T	97820153	3	4	54	1	0	0	0	0	1	0	0	0	8923	652	23	1	1150	1	LMTK2	7	97820153	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	20991511	97820153	61318510	55	5326											
SMO	6608	broad.mit.edu	37	chr7	128846110	128846111	+	Frame_Shift_Ins	INS	-	-	C													acttccttcaaagccctgggINScaccacctaccagcctctct					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	128846111	-	C	128846110	7	5	54	1	0	1	1	0	0	0	0	0	14898	1203	42	0	1058	0	SMO	7	128846110	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	31025957	128846110	30292553	56	5327											
SHH	6469	broad.mit.edu	37	chr7	155604741	155604742	+	Frame_Shift_Ins	INS	-	-	C													ttcccgaaccccctgcccggINStccgcacgccagtcccgagc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	155604742	-	C	155604741	7	5	54	1	0	1	1	0	0	0	0	0	14377	1261	44	0	1324	0	SHH	7	155604741	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	26758631	155604741	3533922	57	5328											
UBE3C	9690	mdanderson.org	37	chr7	157041098	157041099	+	Missense_Mutation	DNP	GC	GC	TT													tgctggtggagctgccctttGcaggcttctttctttccaag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		TT	157041099	GC	TT	157041098	3	4	54	1	0	0	0	0	1	0	0	0	16987	1319	46	5	2592	5	UBE3C	7	157041098	Missense_Mutation	DNP	GC	TCGA-KO-8404-01A-11D-2310-10	1436357	157041098	2097565	58	5329	132	2									
UBE3C	9690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	157041099	157041099	+	Missense_Mutation	SNP	C	C	T													gctggtggagctgccctttgCaggcttctttctttccaagt					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	157041099	C	T	157041099	3	4	54	1	0	0	0	0	1	0	0	0	16987	710	25	4	2593	4	UBE3C	7	157041099	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	1	157041099	2097564	59	5330	132	2									
CSMD1	64478	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	2836315	2836315	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaagcctggatcagaacaGttcaccactagaaaataaaa	6	9	2	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	2836315	G	T	2836315	3	4	54	1	0	0	0	0	1	0	0	0	3975	1020	36	5	2373	5	CSMD1	8	2836315	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10		2836315	143527707	60	5331											
PABPC1	26986	mdanderson.org	37	chr8	101719138	101719138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacgctgtgttgacatgactCgtggaacctgtgaagaagct	12	9	0	4	rs79940439		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	101719138	C	T	101719138	3	4	54	1	0	0	0	0	1	0	0	0	11442	884	31	1	506	1	PABPC1	8	101719138	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	98882823	101719138	44644884	61	5332											
TG	7038	broad.mit.edu	37	chr8	133913781	133913782	+	Frame_Shift_Ins	INS	-	-	C													gggacgcgcgtgaccgggggINSccagcccgcctgtgagagta					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	133913782	-	C	133913781	7	5	54	1	0	1	1	0	0	0	0	0	15917	1203	42	0	3679	0	TG	8	133913781	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	32194643	133913781	12450241	62	5333											
GLDC	2731	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	6536228	6536228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggccaggacatggtaggggCgtgaaatcctgcaaagggag	17	7	0	1	rs146939116		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	6536228	C	T	6536228	3	4	54	1	0	0	0	0	1	0	0	0	6489	768	27	1	400	1	GLDC	9	6536228	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		6536228	134677203	63	5334											
ADAMTSL1	92949	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	18706839	18706839	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggtgctcctgtctttctctCagtccgtggctgacctgcct	10	14	3	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	18706839	C	T	18706839	4	4	54	1	0	0	0	0	0	1	0	0	274	827	29	4	1727	4	ADAMTSL1	9	18706839	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	12170611	18706839	122506592	64	5335											
MUSK	4593	broad.mit.edu	37	chr9	113459692	113459692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggacagtatcgatgtgtgGcaaaaaacagcctcgggaca	12	9	0	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	113459692	G	A	113459692	3	1	54	1	0	0	0	0	1	0	0	0	10067	1203	42	3	592	3	MUSK	9	113459692	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	94752853	113459692	27753739	65	5336											
STAM	8027	broad.mit.edu	37	chr10	17756602	17756603	+	Frame_Shift_Ins	INS	-	-	C													aggcgccagtatatagtcctINScctcctgccgctactgctgc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	17756603	-	C	17756602	7	5	54	1	0	1	1	0	0	0	0	0	15348	1538	54	0	1500	0	STAM	10	17756602	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10		17756602	117778145	66	5337											
MYO3A	53904	mdanderson.org	37	chr10	26286159	26286159	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aataacattctattgaccacGgaaggtggagtgaaactagt	10	6	1	2	rs12257119	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	26286159	G	T	26286159	2	4	54	1	0	0	0	0	0	0	0	1	10154	1103	39	5		5	MYO3A	10	26286159	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	8529557	26286159	109248588	67	5338											
MUC6	4588	mdanderson.org	37	chr11	1016645	1016645	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgggtggaccctgtggccttGagcgttgttggtggaggaac	18	7	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	1016645	G	C	1016645	2	2	54	1	0	0	0	0	0	0	0	1	10058	1277	45	5		5	MUC6	11	1016645	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10		1016645	133989871	68	5339											
MUC6	4588	mdanderson.org	37	chr11	1017200	1017200	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggcattgagtggatggaGgcagaagtggccatctgtgt	17	5	1	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	1017200	G	C	1017200	2	2	54	1	0	0	0	0	0	0	0	1	10058	987	35	5		5	MUC6	11	1017200	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	555	1017200	133989316	69	5340											
KRTAP5-1	387264	mdanderson.org	37	chr11	1605979	1605979	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagcccccacaagaaccAcaggcccccttggagcaccc	9	18	0	1	rs59646474	bycluster	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	1605979	A	G	1605979	2	3	54	1	0	0	0	0	0	0	0	1	8620	157	6	2		2	KRTAP5-1	11	1605979	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	588779	1605979	133400537	70	5341											
OR51M1	390059	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	5410780	5410780	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttatgtacatggttgccaTctcaggcaattgtttcattc	7	9	2	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	5410780	T	A	5410780	3	1	54	1	0	0	0	0	1	0	0	0	11182	1435	50	5	154	5	OR51M1	11	5410780	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	3804801	5410780	129595736	71	5342											
OR56A1	120796	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	6048328	6048328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacaaattggtagattcTgttaagggtgaaattatcac	9	6	2	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	6048328	T	C	6048328	3	2	54	1	0	0	0	0	1	0	0	0	11212	1588	55	2	353	2	OR56A1	11	6048328	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	637548	6048328	128958188	72	5343											
OR2D3	120775	ucsc.edu	37	chr11	6942589	6942589	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtatgacacagataattgtCtttcttctggttgggtgtac	10	6	3	2	rs202205015		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	6942589	C	T	6942589	2	4	54	1	0	0	0	0	0	0	0	1	11074	900	32	4		4	OR2D3	11	6942589	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	894261	6942589	128063927	73	5344											
PTPN5	84867	broad.mit.edu;mdanderson.org	37	chr11	18755149	18755149	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactcagagggtcgtcagggTctggtgaggtcagacacact	14	9	4	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	18755149	T	C	18755149	3	2	54	1	0	0	0	0	1	0	0	0	12883	1667	58	2	687	2	PTPN5	11	18755149	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	11812560	18755149	116251367	74	5345											
DGKZ	8525	broad.mit.edu	37	chr11	46398729	46398730	+	Frame_Shift_Del	DEL	CT	CT	-													cctcccaacccccacttcccCtctccccacctcaccctgct					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	46398730	CT	-	46398729	7	5	54	1	0	1	0	1	0	0	0	0	4511	681	24	0	3418	0	DGKZ	11	46398729	Frame_Shift_Del	DEL	CT	TCGA-KO-8404-01A-11D-2310-10	27643580	46398729	88607787	75	5346											
OR1S2	219958	mdanderson.org	37	chr11	57970967	57970967	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgatgatgcagacataggaGaagaagatgagtacaaaggg	14	4	0	7	rs138762515	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	57970967	G	A	57970967	2	1	54	1	0	0	0	0	0	0	0	1	11052	933	33	4		4	OR1S2	11	57970967	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	11572238	57970967	77035549	76	5347											
OR1S1	219959	broad.mit.edu;mdanderson.org	37	chr11	57982580	57982580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttttctattgtgtttgtcGtcattgacaatttgctcttg	7	7	3	1	rs147498041		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	57982580	G	A	57982580	3	1	54	1	0	0	0	0	1	0	0	0	11051	1145	40	1	366	1	OR1S1	11	57982580	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	11613	57982580	77023936	77	5348											
FRMD8	83786	broad.mit.edu	37	chr11	65161559	65161560	+	Frame_Shift_Ins	INS	-	-	G													cgtgttcttcccaaagcggcINSgggagctccaggtgaggcag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	65161560	-	G	65161559	7	5	54	1	0	1	1	0	0	0	0	0	6108	759	27	0	417	0	FRMD8	11	65161559	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	7178979	65161559	69844957	78	5349											
CATSPER1	117144	broad.mit.edu	37	chr11	65792709	65792709	+	Frame_Shift_Del	DEL	A	A	-													tggagatatcctgggtatggActtttttggacatctgggtg					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	65792709	A	-	65792709	7	5	54	1	0	1	0	1	0	0	0	0	2712	275	10	0	1248	0	CATSPER1	11	65792709	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	631150	65792709	69213807	79	5350											
C11orf80	79703	broad.mit.edu;hgsc.bcm.edu	37	chr11	66555695	66555696	+	Frame_Shift_Ins	INS	-	-	A													cttcagaggaaggcagctatINStctcaggatatgacaggggt					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	66555696	-	A	66555695	7	5	54	1	0	1	1	0	0	0	0	0	1675	1500	52	0	606	0	C11orf80	11	66555695	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	762986	66555695	68450821	80	5351	133	2									
C11orf80	79703	bcgsc.ca	37	chr11	66555696	66555697	+	Frame_Shift_Ins	INS	-	-	A													ttcagaggaaggcagctattINSctcaggatatgacaggggta					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	66555697	-	A	66555696	7	5	54	1	0	1	1	0	0	0	0	0	1675	1783	62	0	607	0	C11orf80	11	66555696	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	1	66555696	68450820	81	5352	133	2									
KRTAP5-7	440050	mdanderson.org	37	chr11	71238645	71238645	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgcagctgctataagcCctgctgctgctcctcaggct	10	15	1	0	rs201904441		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	71238645	C	A	71238645	3	1	54	1	0	0	0	0	1	0	0	0	8628	623	22	5	301	5	KRTAP5-7	11	71238645	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4682949	71238645	63767871	82	5353											
KRTAP5-7	440050	mdanderson.org	37	chr11	71238685	71238685	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgggtcatcctgctgccaGtccagctgctgtaagccctg	12	13	1	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	71238685	G	A	71238685	2	1	54	1	0	0	0	0	0	0	0	1	8628	1020	36	4		4	KRTAP5-7	11	71238685	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	40	71238685	63767831	83	5354											
OR8B2	26595	mdanderson.org	37	chr11	124252982	124252982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagataatattcttttttgaCacaaagttcattagcatttt	5	5	2	2	rs71491825		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	124252982	C	T	124252982	2	4	54	1	0	0	0	0	0	0	0	1	11306	465	17	4		4	OR8B2	11	124252982	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	53014297	124252982	10753534	84	5355											
NANOG	79923	mdanderson.org	37	chr12	7947571	7947571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagtgacttggaggctgcCttggaagctgctggggaagg	18	8	0	1	rs74826360	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	7947571	C	T	7947571	2	4	54	1	0	0	0	0	0	0	0	1	10228	668	24	4		4	NANOG	12	7947571	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10		7947571	125904324	85	5356											
TAS2R10	50839	broad.mit.edu;mdanderson.org	37	chr12	10978222	10978222	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgagcttctgtgttggagTctctcaatcctgtcacattc	8	11	4	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	10978222	T	C	10978222	3	2	54	1	0	0	0	0	1	0	0	0	15667	1667	58	2	280	2	TAS2R10	12	10978222	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	3030651	10978222	122873673	86	5357											
TAS2R30	259293	mdanderson.org	37	chr12	11286164	11286164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtcacagtttgcaaaGcttttatgtggaccttggtg	13	6	1	0	rs200661425		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	11286164	G	A	11286164	3	1	54	1	0	0	0	0	1	0	0	0	15674	971	34	4	283	4	TAS2R30	12	11286164	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	307942	11286164	122565731	87	5358											
C12orf77	196415	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	25147251	25147251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatatgaaaattgtcatagCatgatgtaggctgatttaaa	8	3	1	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	25147251	C	T	25147251	3	4	54	1	0	0	0	0	1	0	0	0	1728	710	25	4	23	4	C12orf77	12	25147251	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	13861087	25147251	108704644	88	5359											
DDX11	1663	mdanderson.org	37	chr12	31242981	31242981	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccttgggaaggaggccCgggcctgtccctattacggg	16	12	0	0	rs3892690		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	31242981	C	A	31242981	2	1	54	1	0	0	0	0	0	0	0	1	4375	643	23	5		5	DDX11	12	31242981	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	6095730	31242981	102608914	89	5360											
FMNL3	91010	broad.mit.edu	37	chr12	50042932	50042932	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccggtcagtggacttggTatccagcagctaggagaggg	15	9	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	50042932	T	C	50042932	3	2	54	1	0	0	0	0	1	0	0	0	6002	1638	57	2	712	2	FMNL3	12	50042932	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	18799951	50042932	83808963	90	5361											
KRT3	3850	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	53189775	53189775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagaccacagcagagcggcCggagaaaccctggctcccgc	14	15	0	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	53189775	C	T	53189775	3	4	54	1	0	0	0	0	1	0	0	0	8527	652	23	1	1870	1	KRT3	12	53189775	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	3146843	53189775	80662120	91	5362											
NAB2	4665	mdanderson.org	37	chr12	57485373	57485373	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggggcaggggacccccgGatctggccaggccggagcac	17	15	1	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	57485373	G	T	57485373	2	4	54	1	0	0	0	0	0	0	0	1	10210	1161	41	5		5	NAB2	12	57485373	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	4295598	57485373	76366522	92	5363											
OSBPL8	114882	broad.mit.edu	37	chr12	76763581	76763582	+	Frame_Shift_Ins	INS	-	-	C													ggtctttggcatttatggctINScgagttacccgttgccagag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	76763582	-	C	76763581	7	5	54	1	0	1	1	0	0	0	0	0	11362	1538	54	0	613	0	OSBPL8	12	76763581	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	19278208	76763581	57088314	93	5364											
PPP1CC	5501	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	111160464	111160464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttggtcgcataattcgcCgaatctgctccatagattga	9	10	1	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	111160464	C	T	111160464	3	4	54	1	0	0	0	0	1	0	0	0	12436	652	23	1	423	1	PPP1CC	12	111160464	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	34396883	111160464	22691431	94	5365											
UBC	7316	mdanderson.org	37	chr12	125397895	125397895	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagcaccaggtgcagggtAgactctttctggatgttgta	14	8	2	1	rs199930220		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	125397895	A	G	125397895	2	3	54	1	0	0	0	0	0	0	0	1	16948	407	15	2		2	UBC	12	125397895	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	14237431	125397895	8454000	95	5366											
PABPC3	5042	mdanderson.org	37	chr13	25670877	25670877	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtctcgtaaagaacgagaaGctgaacttggagctagggca	13	7	1	3	rs112107735		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	25670877	G	A	25670877	3	1	54	1	0	0	0	0	1	0	0	0	11444	971	34	4	543	4	PABPC3	13	25670877	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10		25670877	89499001	96	5367											
PABPC3	5042	mdanderson.org	37	chr13	25671786	25671786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaacacatcaacacagacaGtgggtccacgtcctgcagct	8	14	1	1	rs113301206	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	25671786	G	A	25671786	3	1	54	1	0	0	0	0	1	0	0	0	11444	1029	36	4	1452	4	PABPC3	13	25671786	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	909	25671786	89498092	97	5368											
RB1	5925	broad.mit.edu;hgsc.bcm.edu	37	chr13	49039350	49039359	+	Frame_Shift_Del	DEL	TTGTCACCAA	TTGTCACCAA	-													ttttgctctagccccctaccTtgtcaccaatacctcacatt					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	TTGTCACCAA	TTGTCACCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	49039359	TTGTCACCAA	-	49039350	7	5	54	1	0	1	0	1	0	0	0	0	13190	1606	56	0	2425	0	RB1	13	49039350	Frame_Shift_Del	DEL	TTGTCACCAA	TCGA-KO-8404-01A-11D-2310-10	23367564	49039350	66130528	98	5369	134	2									
RB1	5925	bcgsc.ca	37	chr13	49039351	49039360	+	Frame_Shift_Del	DEL	TTGTCACCAA	TTGTCACCAA	-													tttgctctagccccctacctTgtcaccaatacctcacattc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	TTGTCACCAA	TTGTCACCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	49039360	TTGTCACCAA	-	49039351	7	5	54	1	0	1	0	1	0	0	0	0	13190	1821	63	0	2426	0	RB1	13	49039351	Frame_Shift_Del	DEL	TTGTCACCAA	TCGA-KO-8404-01A-11D-2310-10	1	49039351	66130527	99	5370	134	2									
HOMEZ	57594	mdanderson.org	37	chr14	23744844	23744844	+	Silent	SNP	C	C	T													tcttcctcctcctcctcctcCtcttcctcatcatcttctgg					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	23744844	C	T	23744844	2	4	54	1	0	0	0	0	0	0	0	1	7339	680	24	4		4	HOMEZ	14	23744844	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10		23744844	83604696	100	5371	135	2									
HOMEZ	57594	mdanderson.org	37	chr14	23744847	23744847	+	Silent	SNP	T	T	C													tcctcctcctcctcctcctcTtcctcatcatcttctggcag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	23744847	T	C	23744847	2	2	54	1	0	0	0	0	0	0	0	1	7339	1606	56	2		2	HOMEZ	14	23744847	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10	3	23744847	83604693	101	5372	135	2									
KLHDC2	23588	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	50244621	50244621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaagaattgattgccaagGaattcctccatcatcaaagg	9	8	2	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	50244621	G	A	50244621	3	1	54	1	0	0	0	0	1	0	0	0	8417	1174	41	3	430	3	KLHDC2	14	50244621	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	26499774	50244621	57104919	102	5373											
ADAM21	8747	mdanderson.org	37	chr14	70924613	70924613	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgcttgttttgggggctttCgaggagtattaaaaataagt	13	3	0	0	rs138262361	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	70924613	C	T	70924613	4	4	54	1	0	0	0	0	0	1	0	0	243	876	31	1	399	1	ADAM21	14	70924613	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	20679992	70924613	36424927	103	5374											
AHNAK2	113146	mdanderson.org	37	chr14	105416323	105416323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaacttgggcattttgaacTtgctgtctttggcagtcaca	10	8	2	2	rs11847209	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	105416323	T	C	105416323	3	2	54	1	0	0	0	0	1	0	0	0	415	1609	56	2	11926	2	AHNAK2	14	105416323	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10	34491710	105416323	1933217	104	5375											
CHRFAM7A	89832	broad.mit.edu	37	chr15	30659650	30659651	+	Frame_Shift_Ins	INS	-	-	G													atcttgcccccgtcggggtcINSgtggtggtggtactgcagca					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	30659651	-	G	30659650	7	5	54	1	0	1	1	0	0	0	0	0	3404	884	31	0	555	0	CHRFAM7A	15	30659650	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10		30659650	71871742	105	5376											
ITGA11	22801	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr15	68624721	68624721	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctcgctcacggccctcGttgaagtacatgggtgcgcc	12	14	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	68624721	G	A	68624721	2	1	54	1	0	0	0	0	0	0	0	1	7935	1136	40	1		1	ITGA11	15	68624721	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	37965071	68624721	33906671	106	5377											
CACNA1H	8912	ucsc.edu	37	chr16	1250559	1250559	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatcggctacgcctggatTgccatcttccaggtgggcgg	13	12	1	0	rs8044363	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	1250559	T	C	1250559	2	2	54	1	0	0	0	0	0	0	0	1	2570	1800	63	4		4	CACNA1H	16	1250559	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10		1250559	89104194	107	5378											
C16orf59	80178	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	2512477	2512477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcggaggcggggcgcctgcGgaaggcctgctcgctgctga	20	12	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	2512477	G	A	2512477	3	1	54	1	0	0	0	0	1	0	0	0	1836	1116	39	1	838	1	C16orf59	16	2512477	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1261918	2512477	87842276	108	5379											
ADCY9	115	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	4029168	4029168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggagtagacggccagtgcGggaagcgacaccaggatggc	18	9	0	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	4029168	G	A	4029168	2	1	54	1	0	0	0	0	0	0	0	1	301	1103	39	1		1	ADCY9	16	4029168	Silent	SNP	G	TCGA-KO-8404-01A-11D-2310-10	1516691	4029168	86325585	109	5380											
ACSM2A	123876	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr16	20497990	20497990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgtccggaaaagcccGtgcgcagtgagacatctaag	13	9	1	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	20497990	G	A	20497990	3	1	54	1	0	0	0	0	1	0	0	0	183	1145	40	1	1774	1	ACSM2A	16	20497990	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	16468822	20497990	69856763	110	5381											
CYLD	1540	broad.mit.edu;mdanderson.org	37	chr16	50825539	50825539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaaatgagaaagttggcGttcccacaattcagcagttg	9	7	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	50825539	G	A	50825539	3	1	54	1	0	0	0	0	1	0	0	0	4174	1145	40	1	2229	1	CYLD	16	50825539	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	30327549	50825539	39529214	111	5382											
MLYCD	23417	broad.mit.edu;hgsc.bcm.edu	37	chr16	83941751	83941752	+	Frame_Shift_Ins	INS	-	-	A													gctgaggctgtgcatcctgtINSaaaaaactggatggacatga					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	83941752	-	A	83941751	7	5	54	1	0	1	1	0	0	0	0	0	9715	1638	57	0	672	0	MLYCD	16	83941751	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	33116212	83941751	6413002	112	5383	136	2									
MLYCD	23417	bcgsc.ca	37	chr16	83941752	83941753	+	Frame_Shift_Ins	INS	-	-	A													ctgaggctgtgcatcctgtaINSaaaaactggatggacatgaa					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	83941753	-	A	83941752	7	5	54	1	0	1	1	0	0	0	0	0	9715	349	13	0	673	0	MLYCD	16	83941752	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	1	83941752	6413001	113	5384	136	2									
ZNF232	7775	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	5012951	5012951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagatgcctgaagcgttggCggaagatctcttgactggta	15	7	1	4	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	5012951	C	T	5012951	3	4	54	1	0	0	0	0	1	0	0	0	17890	768	27	1	1110	1	ZNF232	17	5012951	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		5012951	76182259	114	5385											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	7577609	7577609	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtacagtcagagccaacCtaggagataacacaggccca	11	11	1	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	7577609	C	T	7577609	5	4	54	1	0	0	0	0	0	0	1	0	16486	695	24	4	618	4	TP53	17	7577609	Splice_Site	SNP	C	TCGA-KO-8404-01A-11D-2310-10	2564658	7577609	73617601	115	5386											
RAI1	10743	broad.mit.edu	37	chr17	17700804	17700805	+	Frame_Shift_Ins	INS	-	-	C													cccagcccccggagggcaggINSccctgccagccccagacaag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	17700805	-	C	17700804	7	5	54	1	0	1	1	0	0	0	0	0	13099	1194	42	0	4544	0	RAI1	17	17700804	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	10123195	17700804	63494406	116	5387											
LGALS9C	654346	broad.mit.edu	37	chr17	18387252	18387252	+	Frame_Shift_Del	DEL	G	G	-													gatttcagatcactgtcaatGgggccgttctcagctgcagt					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	18387252	G	-	18387252	7	5	54	1	0	1	0	1	0	0	0	0	8813	1348	47	0	109	0	LGALS9C	17	18387252	Frame_Shift_Del	DEL	G	TCGA-KO-8404-01A-11D-2310-10	686448	18387252	62807958	117	5388											
KRTAP4-8	728224	mdanderson.org	37	chr17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagctggggcgacagcagGtgggctggcagcacacagac	17	11	0	1	rs201246375		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	39254149	G	C	39254149	3	2	54	1	0	0	0	0	1	0	0	0	8618	1261	44	5	373	5	KRTAP4-8	17	39254149	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	20866897	39254149	41941061	118	5389											
CDC27	996	mdanderson.org	37	chr17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtcctcctaataaacttcGaccagtttttggtttatttt	6	8	0	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	45234325	G	A	45234325	4	1	54	1	0	0	0	0	0	1	0	0	3095	1066	37	1	1748	1	CDC27	17	45234325	Nonsense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	5980176	45234325	35960885	119	5390											
CDC27	996	mdanderson.org	37	chr17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggggtgtttccgtaagaaCtgtctcaggctgtctgtgag	14	8	2	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	45234625	C	T	45234625	3	4	54	1	0	0	0	0	1	0	0	0	3095	565	20	4	1947	4	CDC27	17	45234625	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	300	45234625	35960585	120	5391											
SDK2	54549	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	71375627	71375627	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctgcggggggctggagggCccctcacccacagcgttgta	15	14	1	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	71375627	C	A	71375627	2	1	54	1	0	0	0	0	0	0	0	1	14066	726	26	5		5	SDK2	17	71375627	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	26141002	71375627	9819583	121	5392											
NPTX1	4884	broad.mit.edu	37	chr17	78449424	78449425	+	Frame_Shift_Ins	INS	-	-	G													ctcctccagggtgttcacccINSgggacagcacctgcctctcc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	78449425	-	G	78449424	7	5	54	1	0	1	1	0	0	0	0	0	10681	652	23	0	775	0	NPTX1	17	78449424	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	7073797	78449424	2745786	122	5393											
MADCAM1	8174	mdanderson.org	37	chr19	501714	501714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcccgacaccacctcccCggagtctcccgacaccacct	6	23	1	0	rs78071082	bycluster;byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	501714	C	A	501714	3	1	54	1	0	0	0	0	1	0	0	0	9224	652	23	5	727	5	MADCAM1	19	501714	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		501714	58627269	123	5394											
C3	718	broad.mit.edu	37	chr19	6679165	6679166	+	Frame_Shift_Ins	INS	-	-	C													tcctggctcacaggccttgtINSccagccgttcttccagggtg					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	6679166	-	C	6679165	7	5	54	1	0	1	1	0	0	0	0	0	2224	1667	58	0	406	0	C3	19	6679165	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	6177451	6679165	52449818	124	5395											
PODNL1	79883	broad.mit.edu	37	chr19	14044085	14044087	+	In_Frame_Del	DEL	CCC	CCC	-													ccggcgggcagccctgagctCcccagctggttgtgctgcag					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	14044087	CCC	-	14044085	7	5	54	1	0	1	0	1	0	0	0	0	12259	842	30	0	570	0	PODNL1	19	14044085	In_Frame_Del	DEL	CCC	TCGA-KO-8404-01A-11D-2310-10	7364920	14044085	45084898	125	5396											
GTPBP3	84705	mdanderson.org	37	chr19	17448961	17448961	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgccctccgaattctcacAgcaccccgagacctgcccct	6	21	1	1	rs1864112	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	17448961	A	C	17448961	2	2	54	1	0	0	0	0	0	0	0	1	6939	175	7	5		5	GTPBP3	19	17448961	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	3404876	17448961	41680022	126	5397											
RPL18A	6142	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	17972198	17972198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcgcctaatcatgtcGtcgccaagtcccgcttctgg	9	14	3	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	17972198	G	A	17972198	3	1	54	1	0	0	0	0	1	0	0	0	13660	1145	40	1	121	1	RPL18A	19	17972198	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	523237	17972198	41156785	127	5398											
LRRC25	126364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	18507174	18507174	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcccagggtttgttcagCtcccggcttctggccactcg	12	15	2	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	18507174	C	T	18507174	2	4	54	1	0	0	0	0	0	0	0	1	9052	796	28	4		4	LRRC25	19	18507174	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	534976	18507174	40621809	128	5399											
ZNF626	199777	mdanderson.org	37	chr19	20807270	20807270	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccagtatgaattttcttAtgtgtagtaaggttagagga	10	4	2	2	rs4809070	bycluster;byfrequency;by2hit2allele	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	20807270	A	G	20807270	2	3	54	1	0	0	0	0	0	0	0	1	18155	446	16	4		4	ZNF626	19	20807270	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	2300096	20807270	38321713	129	5400											
UQCRFS1	7386	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	29698692	29698692	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctagatcatgctgtgggtcCctcaactgtgataattcaac	8	10	4	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	29698692	C	G	29698692	3	3	54	1	0	0	0	0	1	0	0	0	17127	622	22	5	240	5	UQCRFS1	19	29698692	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	8891422	29698692	29430291	130	5401											
CYP2F1	1572	mdanderson.org	37	chr19	41633809	41633809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctgccacccctgcagggcGccgtctgtgcctgggagagt	14	15	1	1	rs139951793	byfrequency	TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	41633809	G	A	41633809	3	1	54	1	0	0	0	0	1	0	0	0	4202	1087	38	1	1332	1	CYP2F1	19	41633809	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	11935117	41633809	17495174	131	5402											
ZNF285	26974	mdanderson.org	37	chr19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacacacattgcatttgtatGgtttctcccctgtgtggact	8	11	1	0	rs77661661		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	44891043	G	T	44891043	3	4	54	1	0	0	0	0	1	0	0	0	17927	1348	47	5	412	5	ZNF285	19	44891043	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	3257234	44891043	14237940	132	5403											
LMTK3	114783	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	49001439	49001439	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cctccttgggggtgtcagctCcccattctccagcactttct	8	16	3	0	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		A	49001439	C	A	49001439	4	1	54	1	0	0	0	0	0	1	0	0	8924	864	30	5	1515	5	LMTK3	19	49001439	Nonsense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4110396	49001439	10127544	133	5404											
ZNF468	90333	mdanderson.org	37	chr19	53352380	53352380	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taattctccagcatcacgtcCctgtataaagtcctctgagc	6	13	3	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	53352380	C	T	53352380	2	4	54	1	0	0	0	0	0	0	0	1	18033	622	22	3		3	ZNF468	19	53352380	Silent	SNP	C	TCGA-KO-8404-01A-11D-2310-10	4350941	53352380	5776603	134	5405											
KIR2DL1	3802	mdanderson.org	37	chr19	55286795	55286795	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaacggaacattccaggcTgactttcctctgggccctgc	10	14	2	1	rs200104747		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	55286795	T	C	55286795	2	2	54	1	0	0	0	0	0	0	0	1	8377	1567	55	2		2	KIR2DL1	19	55286795	Silent	SNP	T	TCGA-KO-8404-01A-11D-2310-10	1934415	55286795	3842188	135	5406											
SLC27A5	10998	broad.mit.edu	37	chr19	59022739	59022740	+	Frame_Shift_Ins	INS	-	-	C													tgttgggcagcccagcttggINSccagccccagccacatacac					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	59022740	-	C	59022739	7	5	54	1	0	1	1	0	0	0	0	0	14627	1203	42	0	1528	0	SLC27A5	19	59022739	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	3735944	59022739	106244	136	5407											
FAM83C	128876	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	33874426	33874426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtgacccagggtcagcCgtttctcatccctgaccagg	11	14	2	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	33874426	C	T	33874426	3	4	54	1	0	0	0	0	1	0	0	0	5684	652	23	1	91	1	FAM83C	20	33874426	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		33874426	29151094	137	5408											
LPIN3	64900	broad.mit.edu	37	chr20	39984606	39984608	+	In_Frame_Del	DEL	TTG	TTG	-													tgatcctggagatcccctccTtgccaccctccactccaccc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	39984608	TTG	-	39984606	7	5	54	1	0	1	0	1	0	0	0	0	8992	1606	56	0	1785	0	LPIN3	20	39984606	In_Frame_Del	DEL	TTG	TCGA-KO-8404-01A-11D-2310-10	6110180	39984606	23040914	138	5409											
CTCFL	140690	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	56087702	56087702	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctcttctcattcttatgAgttttctggtgctgaatgag	8	8	4	3	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	56087702	A	G	56087702	2	3	54	1	0	0	0	0	0	0	0	1	4032	291	11	2		2	CTCFL	20	56087702	Silent	SNP	A	TCGA-KO-8404-01A-11D-2310-10	16103096	56087702	6937818	139	5410											
KCNQ2	3785	broad.mit.edu	37	chr20	62076054	62076055	+	Frame_Shift_Ins	INS	-	-	C													agcccagcagcttccaggtgINScctccccgccggtccatgcg					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	62076055	-	C	62076054	7	5	54	1	0	1	1	0	0	0	0	0	8144	1306	46	0	2090	0	KCNQ2	20	62076054	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	5988352	62076054	949466	140	5411											
OR11H1	81061	mdanderson.org	37	chr22	16449605	16449605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggagtgtgaagtcgccggTcacaccacaggacaaaagca	13	10	1	1	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	16449605	T	C	16449605	3	2	54	1	0	0	0	0	1	0	0	0	11005	1667	58	2	782	2	OR11H1	22	16449605	Missense_Mutation	SNP	T	TCGA-KO-8404-01A-11D-2310-10		16449605	34854961	141	5412											
RIMBP3	85376	broad.mit.edu	37	chr22	20458628	20458629	+	Frame_Shift_Ins	INS	-	-	G													ggaatctgctccacgaagttINSggagggcaccagcccccgcc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		G	20458629	-	G	20458628	7	5	54	1	0	1	1	0	0	0	0	0	13457	1812	63	0	2249	0	RIMBP3	22	20458628	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	4009023	20458628	30845938	142	5413											
KDELR3	11015	hgsc.bcm.edu	37	chr22	38877304	38877304	+	Frame_Shift_Del	DEL	A	A	-													agactggagaggctgagaccAtaactactcactacctgttc					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	38877304	A	-	38877304	7	5	54	1	0	1	0	1	0	0	0	0	8182	217	8	0	453	0	KDELR3	22	38877304	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	18418676	38877304	12427262	143	5414	137	2									
KDELR3	11015	bcgsc.ca	37	chr22	38877305	38877305	+	Frame_Shift_Del	DEL	A	A	-													gactggagaggctgagaccaTaactactcactacctgttct					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	38877305	A	-	38877305	7	5	54	1	0	1	0	1	0	0	0	0	8182	1406	49	0	454	0	KDELR3	22	38877305	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	1	38877305	12427261	144	5415	137	2									
RPS6KA3	6197	broad.mit.edu	37	chrX	20187576	20187576	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaagaagaatttcaatttCttctgttgggtctctcttgc	8	8	5	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	20187576	C	T	20187576	3	4	54	1	0	0	0	0	1	0	0	0	13747	922	32	4	863	4	RPS6KA3	23	20187576	Missense_Mutation	SNP	C	TCGA-KO-8404-01A-11D-2310-10		20187576	135082984	145	5416											
FAM47B	170062	broad.mit.edu	37	chrX	34961067	34961068	+	Frame_Shift_Ins	INS	-	-	C													aagcacaggcgcctgaggttINScccgcctgtggacacccaga					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	34961068	-	C	34961067	7	5	54	1	0	1	1	0	0	0	0	0	5619	1783	62	0	121	0	FAM47B	23	34961067	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	14773491	34961067	120309493	146	5417											
HUWE1	10075	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	53586462	53586462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgctgctcagctgaaGgatgtcagcagcagctgagg	15	9	2	2	novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		T	53586462	G	T	53586462	3	4	54	1	0	0	0	0	1	0	0	0	7522	1000	35	5	5468	5	HUWE1	23	53586462	Missense_Mutation	SNP	G	TCGA-KO-8404-01A-11D-2310-10	18625395	53586462	101684098	147	5418											
RAB40A	142684	broad.mit.edu	37	chrX	102755468	102755469	+	Frame_Shift_Ins	INS	-	-	C													atggtacaaaatcttccctgINSccccgacgtatcccagagct					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		C	102755469	-	C	102755468	7	5	54	1	0	1	1	0	0	0	0	0	13031	1328	46	0	620	0	RAB40A	23	102755468	Frame_Shift_Ins	INS	-	TCGA-KO-8404-01A-11D-2310-10	49169006	102755468	52515092	148	5419											
USP26	83844	broad.mit.edu	37	chrX	132161205	132161205	+	Frame_Shift_Del	DEL	A	A	-													tctatattataggtatctttAaaaaaaagtagccgtgccaa					novel		TCGA-KO-8404-01A-11D-2310-10	TCGA-KO-8404-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af8dd8cc-ebaa-432c-bcd8-2d792de62be1	d957b0fd-8a5b-410b-b85b-0b8985321ab0		-	132161205	A	-	132161205	7	5	54	1	0	1	0	1	0	0	0	0	17163	359	13	0	1700	0	USP26	23	132161205	Frame_Shift_Del	DEL	A	TCGA-KO-8404-01A-11D-2310-10	29405737	132161205	23109355	149	5420											
ENO1	2023	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	8923329	8923329	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccacaaccaggtcagcgaTgaaggtatcttcagtctccc	8	15	4	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	8923329	T	A	8923329	3	1	55	1	0	0	0	0	1	0	0	0	5160	1464	51	5	175	5	ENO1	1	8923329	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		8923329	240327292	1	5421											
TMEM201	199953	ucsc.edu	37	chr1	9673104	9673104	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcttggccgccaacgcccTgttcacctcggtgtttctgt	11	14	2	0	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	9673104	T	C	9673104	3	2	55	1	0	0	0	0	1	0	0	0	16230	1580	55	2	2025	2	TMEM201	1	9673104	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	749775	9673104	239577517	2	5422											
FAM131C	348487	broad.mit.edu;mdanderson.org	37	chr1	16386095	16386095	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgatggcaaactgctcggcGacccctgggggaacagcgag	16	11	0	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	16386095	G	A	16386095	2	1	55	1	0	0	0	0	0	0	0	1	5484	1045	37	1		1	FAM131C	1	16386095	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	6712991	16386095	232864526	3	5423											
NPHS2	7827	mdanderson.org	37	chr1	179544941	179544941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctcttgttctccttgtgcGgagtcctgccgcctcgcccg	10	18	2	0	rs74315344		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	179544941	G	A	179544941	3	1	55	1	0	0	0	0	1	0	0	0	10662	1116	39	1	1124	1	NPHS2	1	179544941	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10	163158846	179544941	69705680	4	5424											
CHIT1	1118	bcgsc.ca	37	chr1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcatctaagtccagtgccCagaccatggccccgcccagt	9	16	2	1	rs201320385	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	203186950	C	T	203186950	4	4	55	1	0	0	0	0	0	1	0	0	3375	595	21	4	335	4	CHIT1	1	203186950	Nonsense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	23642009	203186950	46063671	5	5425											
SRGAP2	23380	broad.mit.edu	37	chr1	206516357	206516357	+	Frame_Shift_Del	DEL	A	A	-													aggactcaggaagactctttAaaaaggtacagagatatttc					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		-	206516357	A	-	206516357	7	5	55	1	0	1	0	1	0	0	0	0	15246	369	13	0	160	0	SRGAP2	1	206516357	Frame_Shift_Del	DEL	A	TCGA-KO-8405-01A-11D-2310-10	3329407	206516357	42734264	6	5426											
OR2T33	391195	mdanderson.org	37	chr1	248436807	248436807	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcactctccaccacccagtgTggggaggaagaagatctgca	12	12	2	2	rs74534795	bycluster	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	248436807	T	A	248436807	3	1	55	1	0	0	0	0	1	0	0	0	11103	1696	59	5	655	5	OR2T33	1	248436807	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	41920450	248436807	813814	7	5427											
MBOAT2	129642	broad.mit.edu	37	chr2	9013240	9013240	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatttacatgttacttacctAgcgtccatgcaaaatagtat	5	8	0	0	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	9013240	A	G	9013240	3	3	55	1	0	0	0	0	1	0	0	0	9434	420	15	2	705	2	MBOAT2	2	9013240	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10		9013240	234186133	8	5428											
NPAS2	4862	broad.mit.edu	37	chr2	101607324	101607324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaagtcagcaggacgggaCggcaagtcaagtacgtggac	16	9	2	0	rs141762291		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	101607324	C	T	101607324	3	4	55	1	0	0	0	0	1	0	0	0	10642	527	19	1	2171	1	NPAS2	2	101607324	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	92594084	101607324	141592049	9	5429											
CBWD2	150472	broad.mit.edu	37	chr2	114201378	114201379	+	Frame_Shift_Ins	INS	-	-	G													aatccttagctgtcagccaaINSggtggagagctctatgaaga					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	114201379	-	G	114201378	7	5	55	1	0	1	1	0	0	0	0	0	2738	69	3	0	286	0	CBWD2	2	114201378	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	12594054	114201378	128997995	10	5430											
HS6ST1	9394	mdanderson.org	37	chr2	129025928	129025928	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaggtccttggcgtagtcGtacagctgcatgtccaggtc	13	10	0	1	rs34162993		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	129025928	G	A	129025928	2	1	55	1	0	0	0	0	0	0	0	1	7428	1140	40	1		1	HS6ST1	2	129025928	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	14824550	129025928	114173445	11	5431											
ADAM23	8745	broad.mit.edu;bcgsc.ca	37	chr2	207459582	207459582	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaattcaagccctaaatatgAgcagctgtccactcgattcc	6	12	1	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	207459582	A	G	207459582	3	3	55	1	0	0	0	0	1	0	0	0	245	304	11	2	2290	2	ADAM23	2	207459582	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	78433654	207459582	35739791	12	5432											
CCR2	729230	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr3	46399846	46399846	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaattcttcggcctgagtaaCtgtgaaagcaccagtcaact	9	10	2	2	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	46399846	C	A	46399846	3	1	55	1	0	0	0	0	1	0	0	0	2970	564	20	5	830	5	CCR2	3	46399846	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10		46399846	151622584	13	5433											
MUC4	4585	mdanderson.org	37	chr3	195509641	195509641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggtgtcacctgtggatActgaggaaaggctggtgaca	17	6	1	2	rs28414759		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	195509641	A	G	195509641	3	3	55	1	0	0	0	0	1	0	0	0	10056	391	14	2		2	MUC4	3	195509641	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	149109795	195509641	2512789	14	5434											
MUC4	4585	bcgsc.ca	37	chr3	195511358	195511358	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaggaagaggggtggtgtCacctgtggatactgaggaag	18	5	1	2	rs77614482		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	195511358	C	G	195511358	3	3	55	1	0	0	0	0	1	0	0	0	10056	826	29	5		5	MUC4	3	195511358	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	1717	195511358	2511072	15	5435											
OTOP1	133060	ucsc.edu	37	chr4	4228424	4228425	+	Missense_Mutation	DNP	TT	TT	CC													ctgctcagcatctcggccagTttctgtgggacgctggcgcg					rs78657691		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		CC	4228425	TT	CC	4228424	3	2	55	1	0	0	0	0	1	0	0	0	11384	1722	60	2	1694	2	OTOP1	4	4228424	Missense_Mutation	DNP	TT	TCGA-KO-8405-01A-11D-2310-10		4228424	186925852	16	5436											
FBXW7	55294	hgsc.bcm.edu	37	chr4	153247276	153247276	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taacaaccctcctgccatcaTattgaacacagcggactgct	6	14	1	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	153247276	T	C	153247276	3	2	55	1	0	0	0	0	1	0	0	0	5818	1406	49	4	609	4	FBXW7	4	153247276	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	149018852	153247276	37907000	17	5437											
PTCD2	79810	ucsc.edu	37	chr5	71638808	71638808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgagatggcaaaagctgTgtccattttttctcaaatca	8	7	2	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	71638808	T	C	71638808	3	2	55	1	0	0	0	0	1	0	0	0	12817	1696	59	2	803	2	PTCD2	5	71638808	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		71638808	109276452	18	5438											
TIMD4	91937	broad.mit.edu	37	chr5	156378731	156378733	+	In_Frame_Del	DEL	GGT	GGT	-													ggggttgttgtcatttgtcgGgtggtggtggggcttgttgt					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		-	156378733	GGT	-	156378731	7	5	55	1	0	1	0	1	0	0	0	0	16007	1219	43	0	693	0	TIMD4	5	156378731	In_Frame_Del	DEL	GGT	TCGA-KO-8405-01A-11D-2310-10	84739923	156378731	24536529	19	5439											
NRSN1	140767	ucsc.edu	37	chr6	24146152	24146152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtccagggttcaaaatgTccagcctctactggcaacct	8	12	2	0	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	24146152	T	C	24146152	3	2	55	1	0	0	0	0	1	0	0	0	10741	1667	58	2	572	2	NRSN1	6	24146152	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		24146152	146968915	20	5440											
HLA-A	3105	mdanderson.org	37	chr6	29910801	29910801	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctactacaaccagagcgaggCcggtgagtgaccccggccgg	14	14	0	3	rs1136692	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	29910801	C	A	29910801	3	1	55	1	0	0	0	0	1	0	0	0	7253	739	26	5	347	5	HLA-A	6	29910801	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	5764649	29910801	141204266	21	5441											
RNF39	80352	mdanderson.org	37	chr6	30043171	30043171	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacacggcaggccgcagcaGggacaggcggtgggggaagc	21	10	0	0	rs9261304		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	30043171	G	C	30043171	2	2	55	1	0	0	0	0	0	0	0	1	13586	987	35	5		5	RNF39	6	30043171	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	132370	30043171	141071896	22	5442											
HLA-B	3106	mdanderson.org	37	chr6	31324595	31324595	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctctatccacggcgcccgCggctcctctctcggactcgc	10	19	2	0	rs144857500	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	31324595	C	G	31324595	2	3	55	1	0	0	0	0	0	0	0	1	7254	755	27	5		5	HLA-B	6	31324595	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	1281424	31324595	139790472	23	5443											
HSP90AB1	3326	mdanderson.org	37	chr6	44221262	44221262	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggcagcagaggaacccaAtgctgcagttcctgatgaga	13	9	0	3	rs201760495	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	44221262	A	G	44221262	3	3	55	1	0	0	0	0	1	0	0	0	7462	101	4	4	2144	4	HSP90AB1	6	44221262	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	12896667	44221262	126893805	24	5444											
ROS1	6098	bcgsc.ca	37	chr6	117718246	117718246	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtcgggacttgagctcTcaatattcctaatcaaaggt	9	9	2	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	117718246	T	C	117718246	3	2	55	1	0	0	0	0	1	0	0	0	13626	1551	54	2	6580	2	ROS1	6	117718246	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	73496984	117718246	53396821	25	5445											
C7orf50	84310	ucsc.edu;bcgsc.ca	37	chr7	1049662	1049662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccacaaggcctgcctcccGcagacgctgcctctcctctt	9	19	2	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	1049662	G	A	1049662	3	1	55	1	0	0	0	0	1	0	0	0	2422	1086	38	1	349	1	C7orf50	7	1049662	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10		1049662	158089001	26	5446											
VPS37D	155382	ucsc.edu	37	chr7	73085354	73085354	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggcccaggagcagatggAgcagctgctgctcggggagc	17	13	0	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	73085354	A	G	73085354	3	3	55	1	0	0	0	0	1	0	0	0	17314	304	11	2	418	2	VPS37D	7	73085354	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	72035692	73085354	86053309	27	5447											
PRSS3	5646	mdanderson.org	37	chr9	33796734	33796734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgtccctgaattctggctCccacttctgcggtggctccc	11	15	2	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	33796734	C	A	33796734	3	1	55	1	0	0	0	0	1	0	0	0	12711	855	30	5	355	5	PRSS3	9	33796734	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10		33796734	107416697	28	5448											
SARDH	1757	broad.mit.edu;bcgsc.ca	37	chr9	136550314	136550314	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acgtggccagctggaacctaCcaggtgccctgcggctctca	12	15	1	0	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	136550314	C	A	136550314	5	1	55	1	0	0	0	0	0	0	1	0	13937	521	18	5	612	5	SARDH	9	136550314	Splice_Site	SNP	C	TCGA-KO-8405-01A-11D-2310-10	102753580	136550314	4663117	29	5449											
MAN1B1	11253	broad.mit.edu	37	chr9	139990718	139990719	+	Frame_Shift_Ins	INS	-	-	C													gacacatccagcggggaccaINScctcacctgcagattagacc					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	139990719	-	C	139990718	7	5	55	1	0	1	1	0	0	0	0	0	9289	146	6	0	509	0	MAN1B1	9	139990718	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	3440404	139990718	1222713	30	5450											
IDE	3416	broad.mit.edu	37	chr10	94223677	94223677	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccactctgctttctaggtAgtgaggtggcttttctgact	10	9	3	2	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	94223677	A	G	94223677	3	3	55	1	0	0	0	0	1	0	0	0	7554	420	15	2	507	2	IDE	10	94223677	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10		94223677	41311070	31	5451											
MUC5B	727897	broad.mit.edu	37	chr11	1263525	1263526	+	Frame_Shift_Ins	INS	-	-	G													caacctcaggggttgcaggcINSggggacatggaaacttttga					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	1263526	-	G	1263525	7	5	55	1	0	1	1	0	0	0	0	0	10057	755	27	0	5546	0	MUC5B	11	1263525	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10		1263525	133742991	32	5452											
OR4A5	81318	mdanderson.org	37	chr11	51412022	51412022	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaaatagtgcagtggcttaCagatggccacatagcgatca	10	9	2	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	51412022	C	G	51412022	3	3	55	1	0	0	0	0	1	0	0	0	11122	478	17	5	577	5	OR4A5	11	51412022	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	50148497	51412022	83594494	33	5453											
OR4A16	81327	mdanderson.org	37	chr11	55111086	55111086	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgaacatcatgaatcgacTggtttgcatccttctgttgg	9	8	2	2	rs78354885	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	55111086	T	A	55111086	3	1	55	1	0	0	0	0	1	0	0	0	11120	1580	55	5	412	5	OR4A16	11	55111086	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	3699064	55111086	79895430	34	5454											
OR1S2	219958	mdanderson.org	37	chr11	57970980	57970980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cataggagaagaagatgagtAcaaaggggaagatgataact	13	3	0	6	rs34249289	bycluster;alternate_allele	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	57970980	A	G	57970980	3	3	55	1	0	0	0	0	1	0	0	0	11052	391	14	2	306	2	OR1S2	11	57970980	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10	2859894	57970980	77035536	35	5455											
ATG2A	23130	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr11	64664287	64664287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagctggttcttgcggatGtcctgcagccactcgttgag	14	11	1	1	rs180755321	by1000genomes	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	64664287	G	A	64664287	2	1	55	1	0	0	0	0	0	0	0	1	1097	1368	48	4		4	ATG2A	11	64664287	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	6693307	64664287	70342229	36	5456											
FOLR2	2350	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	71932013	71932013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actttaactgggaccactgcGgcaagatggagcccgcctgc	12	13	0	1	rs74853303	bycluster;byfrequency;by1000genomes	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	71932013	G	A	71932013	3	1	55	1	0	0	0	0	1	0	0	0	6031	1116	39	1	256	1	FOLR2	11	71932013	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10	7267726	71932013	63074503	37	5457											
CSDA	8531	mdanderson.org	37	chr12	10875488	10875488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcgctgccggcggcggTggctaaagaggcggcggccg	19	12	1	1	rs1126501		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	10875488	T	C	10875488	3	2	55	1	0	0	0	0	1	0	0	0	3958	1696	59	2	931	2	CSDA	12	10875488	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		10875488	122976407	38	5458											
HOXC9	3225	mdanderson.org	37	chr12	54394497	54394497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcacaaagaggagaaggcCgacctggaccccagtaagtt	12	10	0	2	rs2241820	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	54394497	C	T	54394497	2	4	55	1	0	0	0	0	0	0	0	1	7375	639	23	1		1	HOXC9	12	54394497	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	43519009	54394497	79457398	39	5459											
ZFP106	64397	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	42720229	42720229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactaacctttatgttgaagGtgaccacagtgccatttgcc	8	11	0	2	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	42720229	G	A	42720229	3	1	55	1	0	0	0	0	1	0	0	0	17742	1261	44	3	767	3	ZFP106	15	42720229	Missense_Mutation	SNP	G	TCGA-KO-8405-01A-11D-2310-10		42720229	59811163	40	5460											
WDR90	197335	mdanderson.org	37	chr16	705360	705360	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcggctgcgtggcggggTgctgcgttcctgccccgtgg	19	13	0	0	rs3803697	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	705360	T	C	705360	3	2	55	1	0	0	0	0	1	0	0	0	17443	1696	59	2	1668	2	WDR90	16	705360	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		705360	89649393	41	5461											
ZNF205	7755	broad.mit.edu	37	chr16	3169758	3169759	+	Frame_Shift_Ins	INS	-	-	C													ggcgagaagccctacacctgINSccccgcctgccggaagagct					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	3169759	-	C	3169758	7	5	55	1	0	1	1	0	0	0	0	0	17869	1319	46	0	1119	0	ZNF205	16	3169758	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	2464398	3169758	87184995	42	5462											
CREBBP	1387	broad.mit.edu	37	chr16	3817815	3817815	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttctactttcacttcaggTttcttttcatccacttccat	2	13	5	0	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	3817815	T	C	3817815	2	2	55	1	0	0	0	0	0	0	0	1	3890	1722	60	2		2	CREBBP	16	3817815	Silent	SNP	T	TCGA-KO-8405-01A-11D-2310-10	648057	3817815	86536938	43	5463											
NOB1	28987	bcgsc.ca	37	chr16	69783533	69783533	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcgatgagctcaccttaaCctttaaaaaaacaaaaaaca	3	9	1	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	69783533	C	T	69783533	3	4	55	1	0	0	0	0	1	0	0	0	10590	521	18	3	934	3	NOB1	16	69783533	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	65965718	69783533	20571220	44	5464											
ODF4	146852	hgsc.bcm.edu;bcgsc.ca	37	chr17	8249105	8249105	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctccaagggcacagacgAtcacagacacccccatcacc	6	17	3	2	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	8249105	A	G	8249105	3	3	55	1	0	0	0	0	1	0	0	0	10912	333	12	4	719	4	ODF4	17	8249105	Missense_Mutation	SNP	A	TCGA-KO-8405-01A-11D-2310-10		8249105	72946105	45	5465											
PLEKHM1	9842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	43523003	43523003	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggctgggcccggatctgtgtCagaaacttcagggcctgcct	14	12	3	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	43523003	C	G	43523003	2	3	55	1	0	0	0	0	0	0	0	1	12160	813	29	5		5	PLEKHM1	17	43523003	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	35273898	43523003	37672207	46	5466											
EPN3	55040	mdanderson.org	37	chr17	48619290	48619290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgcgcaccggctcgccGgcgctgggcctggcaggcgg	18	15	0	1	rs112657244	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	48619290	G	A	48619290	2	1	55	1	0	0	0	0	0	0	0	1	5226	1103	39	1		1	EPN3	17	48619290	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10	5096287	48619290	32575920	47	5467											
SSTR2	6752	hgsc.bcm.edu	37	chr17	71166135	71166135	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acccctcaccatcatctgtcTttgctacctgttcattatca	3	15	6	0	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	71166135	T	C	71166135	3	2	55	1	0	0	0	0	1	0	0	0	15298	1609	56	2	679	2	SSTR2	17	71166135	Missense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10	22546845	71166135	10029075	48	5468											
PRKCSH	5589	hgsc.bcm.edu;mdanderson.org	37	chr19	11558367	11558367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaggaagaagaggctgaaga	23	1	0	4	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	11558367	G	A	11558367	2	1	55	1	0	0	0	0	0	0	0	1	12605	991	35	4		4	PRKCSH	19	11558367	Silent	SNP	G	TCGA-KO-8405-01A-11D-2310-10		11558367	47570616	49	5469											
ZNF793	390927	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	38028153	38028153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcactgtgagaaagctttcaCccagaacccggcacttatgt	8	12	2	2	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		G	38028153	C	G	38028153	3	3	55	1	0	0	0	0	1	0	0	0	18268	507	18	5	607	5	ZNF793	19	38028153	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	26469786	38028153	21100830	50	5470											
CNTD2	79935	broad.mit.edu	37	chr19	40730638	40730639	+	Frame_Shift_Ins	INS	-	-	C													agatacctacgtgcacctggINSaccagccagtctaccaccag					novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		C	40730639	-	C	40730638	7	5	55	1	0	1	1	0	0	0	0	0	3665	1161	41	0	591	0	CNTD2	19	40730638	Frame_Shift_Ins	INS	-	TCGA-KO-8405-01A-11D-2310-10	2702485	40730638	18398345	51	5471											
ZNF233	353355	broad.mit.edu	37	chr19	44778459	44778459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagggctttagtcagagttCgcatctccaagaccatcagc	10	11	3	2	rs200116301		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	44778459	C	T	44778459	3	4	55	1	0	0	0	0	1	0	0	0	17891	893	31	1	1660	1	ZNF233	19	44778459	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	4047821	44778459	14350524	52	5472											
LILRB3	11025	mdanderson.org	37	chr19	54724407	54724407	+	Missense_Mutation	SNP	C	C	T													agcgccctcacctgagaccaCgagctccaggggctcactgg					rs1132608		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	54724407	C	T	54724407	3	4	55	1	0	0	0	0	1	0	0	0	8855	536	19	1	681	1	LILRB3	19	54724407	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	9945948	54724407	4404576	53	5473	138	2									
LILRB3	11025	mdanderson.org	37	chr19	54724411	54724411	+	Silent	SNP	C	C	T													ccctcacctgagaccacgagCtccaggggctcactggggtg					rs1132607		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	54724411	C	T	54724411	2	4	55	1	0	0	0	0	0	0	0	1	8855	796	28	4		4	LILRB3	19	54724411	Silent	SNP	C	TCGA-KO-8405-01A-11D-2310-10	4	54724411	4404572	54	5474	138	2									
MAP1LC3A	84557	broad.mit.edu	37	chr20	33147203	33147203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcccgtcctggacaagaCcaagtttttggtcccggacc	11	14	0	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	33147203	C	T	33147203	3	4	55	1	0	0	0	0	1	0	0	0	9307	507	18	3	215	3	MAP1LC3A	20	33147203	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10		33147203	29878317	55	5475											
CXorf23	256643	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	19983778	19983778	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctctccacgtctttaggtcTttttgatgtgtgtccatatt	7	10	3	1	novel		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	19983778	T	A	19983778	4	1	55	1	0	0	0	0	0	1	0	0	4134	1617	56	5	1426	5	CXorf23	23	19983778	Nonsense_Mutation	SNP	T	TCGA-KO-8405-01A-11D-2310-10		19983778	135286782	56	5476											
RLIM	51132	mdanderson.org	37	chrX	73811737	73811737	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaggactggaactggaactTgaactggaactggaactcga	12	8	0	1	rs113198776		TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		A	73811737	T	A	73811737	2	1	55	1	0	0	0	0	0	0	0	1	13485	1799	63	5		5	RLIM	23	73811737	Silent	SNP	T	TCGA-KO-8405-01A-11D-2310-10	53827959	73811737	81458823	57	5477											
MAGEC1	9947	mdanderson.org	37	chrX	140994010	140994010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccagattcctgtgagcCcctccttctcctccacttta	4	18	2	2	rs146798989	byfrequency	TCGA-KO-8405-01A-11D-2310-10	TCGA-KO-8405-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6400c324-2c94-477d-acb9-669d4ea46f1e	43634c4d-e2ed-4b39-bac2-474388af50e5		T	140994010	C	T	140994010	3	4	55	1	0	0	0	0	1	0	0	0	9257	623	22	3	826	3	MAGEC1	23	140994010	Missense_Mutation	SNP	C	TCGA-KO-8405-01A-11D-2310-10	67182273	140994010	14276550	58	5478											
NUDC	10726	hgsc.bcm.edu	37	chr1	27268032	27268033	+	In_Frame_Ins	INS	-	-	GGG													ccggcaggaggccgagcggcINSgggagaaggcggagcgggcg					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		GGG	27268033	-	GGG	27268032	7	5	56	1	0	1	1	0	0	0	0	0	10800	759	27	0	254	0	NUDC	1	27268032	In_Frame_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10		27268032	221982589	1	5479											
TOE1	114034	broad.mit.edu	37	chr1	45808598	45808598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatccttccagcatgagggAccatattgattaccgctgct	8	12	0	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	45808598	A	G	45808598	3	3	56	1	0	0	0	0	1	0	0	0	16453	275	10	2	862	2	TOE1	1	45808598	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	18540566	45808598	203442023	2	5480											
XCL1	6375	broad.mit.edu	37	chr1	168550330	168550330	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taaaagtctgtgctgatccaCaagccacatgggtgagagac	11	9	1	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	168550330	C	A	168550330	3	1	56	1	0	0	0	0	1	0	0	0	17529	479	17	5	227	5	XCL1	1	168550330	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	122741732	168550330	80700291	3	5481											
C1orf106	55765	mdanderson.org	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	200880978	C	T	200880978	3	4	56	1	0	0	0	0	1	0	0	0	1999	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	32330648	200880978	48369643	4	5482											
CD55	1604	bcgsc.ca	37	chr1	207510059	207510059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaatctctaacttccaaggTcccaccaacagttcagaaac	4	13	2	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	207510059	T	C	207510059	3	2	56	1	0	0	0	0	1	0	0	0	3053	1667	58	2	901	2	CD55	1	207510059	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	6629081	207510059	41740562	5	5483											
MTHFD2	10797	hgsc.bcm.edu;bcgsc.ca	37	chr2	74438938	74438938	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attgatgtgggaataaatagAgttcacgatcctgtaactgc	10	6	1	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	74438938	A	T	74438938	3	4	56	1	0	0	0	0	1	0	0	0	10007	301	11	5	860	5	MTHFD2	2	74438938	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10		74438938	168760435	6	5484											
ATF2	1386	ucsc.edu	37	chr2	175986170	175986170	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	attaataaaagcatatactaAccagccacaatgacactgtc	4	10	0	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	175986170	A	C	175986170	5	2	56	1	0	0	0	0	0	0	1	0	1084	57	2	5	1356	5	ATF2	2	175986170	Splice_Site	SNP	A	TCGA-KO-8406-01A-11D-2310-10	101547232	175986170	67213203	7	5485											
COL6A3	1293	mdanderson.org;bcgsc.ca	37	chr2	238269781	238269781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacgggtccaccctcatcacCaggatagcctcggtagccgt	10	15	2	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	238269781	C	T	238269781	3	4	56	1	0	0	0	0	1	0	0	0	3730	594	21	4	3456	4	COL6A3	2	238269781	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	62283611	238269781	4929592	8	5486											
KIAA2018	205717	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	113375013	113375013	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tattcctctgatgttctgagAgtgacctctggctcccaatg	9	11	3	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	113375013	A	T	113375013	3	4	56	1	0	0	0	0	1	0	0	0	8329	304	11	5	1225	5	KIAA2018	3	113375013	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10		113375013	84647417	9	5487											
CCDC37	348807	broad.mit.edu	37	chr3	126142182	126142183	+	Frame_Shift_Ins	INS	-	-	C													cgcaggtcgaactctcccatINScccccccacgcaggaggaca					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	126142183	-	C	126142182	7	5	56	1	0	1	1	0	0	0	0	0	2835	1435	50	0	1139	0	CCDC37	3	126142182	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	12767169	126142182	71880248	10	5488											
GFM1	85476	broad.mit.edu	37	chr3	158362472	158362473	+	Frame_Shift_Ins	INS	-	-	C													ggctctggggcgcggaagggINScccccgcctccctaggctgg					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	158362473	-	C	158362472	7	5	56	1	0	1	1	0	0	0	0	0	6397	1203	42	0	51	0	GFM1	3	158362472	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	32220290	158362472	39659958	11	5489											
PPP1R2	5504	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	195256683	195256683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgccaagatgttcatttcatCccacttctgggattttttgc	7	11	3	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	195256683	C	T	195256683	3	4	56	1	0	0	0	0	1	0	0	0	12455	855	30	3	495	3	PPP1R2	3	195256683	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	36894211	195256683	2765747	12	5490											
MUC4	4585	mdanderson.org	37	chr3	195509125	195509125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggatgctgaggaagggCtagtgacaggaagaggcgtg	19	5	0	3	rs71637183	alternate_allele	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	195509125	C	A	195509125	3	1	56	1	0	0	0	0	1	0	0	0	10056	797	28	5		5	MUC4	3	195509125	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	252442	195509125	2513305	13	5491			1	53		3	3	4682	N	T_C	6.380946e-05
MUC4	4585	mdanderson.org	37	chr3	195509586	195509586	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagagaggtggcgtgaccTgtggatgctgaggaagtgtc	19	5	0	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	195509586	T	G	195509586	2	3	56	1	0	0	0	0	0	0	0	1	10056	1567	55	5		5	MUC4	3	195509586	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	461	195509586	2512844	14	5492			1	53		3	3	4682	N	T_C	6.380946e-05
MUC4	4585	mdanderson.org	37	chr3	195513806	195513806	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaggaagaggggtggtgtCacctgtggatgctgaggaag	19	5	1	2	rs199976859	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	195513806	C	G	195513806	3	3	56	1	0	0	0	0	1	0	0	0	10056	826	29	5		5	MUC4	3	195513806	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	4220	195513806	2508624	15	5493			1	53		3	3	4682	N	T_C	6.380946e-05
ZNF732	654254	mdanderson.org	37	chr4	289864	289864	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaacatcacatctctataCaaattctgctgggcagggtc	7	12	3	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	289864	C	T	289864	2	4	56	1	0	0	0	0	0	0	0	1	18228	477	17	4		4	ZNF732	4	289864	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10		289864	190864412	16	5494			2	54		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	chr4	289878	289878	+	Missense_Mutation	SNP	C	C	A													tctatacaaattctgctgggCagggtccaggcatttccact					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	289878	C	A	289878	3	1	56	1	0	0	0	0	1	0	0	0	18228	710	25	5	1699	5	ZNF732	4	289878	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	14	289878	190864398	17	5495	139	3	2	54		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	chr4	289881	289881	+	Missense_Mutation	SNP	G	G	T													atacaaattctgctgggcagGgtccaggcatttccactctt					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	289881	G	T	289881	3	4	56	1	0	0	0	0	1	0	0	0	18228	1232	43	5	1702	5	ZNF732	4	289881	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	3	289881	190864395	18	5496	139	3	2	54		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	chr4	289888	289888	+	Silent	SNP	G	G	A													ttctgctgggcagggtccagGcatttccactcttctggaga					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	289888	G	A	289888	2	1	56	1	0	0	0	0	0	0	0	1	18228	1195	42	3		3	ZNF732	4	289888	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10	7	289888	190864388	19	5497	139	3	2	54		5	3	65	N	G_C	1.1832e-08
ZNF732	654254	mdanderson.org	37	chr4	289928	289928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaattctatggccacatccCtgaatgttaagagttcctga	8	9	1	4	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	289928	C	T	289928	3	4	56	1	0	0	0	0	1	0	0	0	18228	681	24	4	1749	4	ZNF732	4	289928	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	40	289928	190864348	20	5498			2	54		5	3	65	N	G_C	1.1832e-08
HNRPDL	9987	broad.mit.edu	37	chr4	83350758	83350759	+	Frame_Shift_Ins	INS	-	-	C													cggcggccgcggccgccaatINSgggagaggctgcgggaggct					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	83350759	-	C	83350758	7	5	56	1	0	1	1	0	0	0	0	0	7334	1464	51	0	1204	0	HNRPDL	4	83350758	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	83060830	83350758	107803518	21	5499	140	2									
HNRPDL	9987	broad.mit.edu	37	chr4	83350764	83350764	+	Frame_Shift_Del	DEL	A	A	-													gccgcggccgccaatgggagAggctgcgggaggctaaagta					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		-	83350764	A	-	83350764	7	5	56	1	0	1	0	1	0	0	0	0	7334	304	11	0	1210	0	HNRPDL	4	83350764	Frame_Shift_Del	DEL	A	TCGA-KO-8406-01A-11D-2310-10	6	83350764	107803512	22	5500	140	2									
NAA15	80155	mdanderson.org	37	chr4	140272727	140272727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagggttgcccaccagtcTtcaatactttaagatcatta	7	10	3	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	140272727	T	C	140272727	3	2	56	1	0	0	0	0	1	0	0	0	10196	1609	56	2	1010	2	NAA15	4	140272727	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	56921963	140272727	50881549	23	5501											
HAPLN1	1404	broad.mit.edu	37	chr5	82940353	82940354	+	Frame_Shift_Ins	INS	-	-	C													ccggcattgcaccagtccagINScccgccccgccaggcgtcgt					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	82940354	-	C	82940353	7	5	56	1	0	1	1	0	0	0	0	0	7012	962	34	0	468	0	HAPLN1	5	82940353	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10		82940353	97974907	24	5502											
LECT2	3950	broad.mit.edu	37	chr5	135283165	135283165	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatacttaattggcttaatgTagaacattttgacacaaaaa	5	5	0	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	135283165	T	C	135283165	3	2	56	1	0	0	0	0	1	0	0	0	8775	1638	57	2	148	2	LECT2	5	135283165	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	52342812	135283165	45632095	25	5503											
MDN1	23195	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr6	90353740	90353740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctatgggtggtcagagGctgtcaccaactcaaaccac	10	11	4	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	90353740	G	T	90353740	3	4	56	1	0	0	0	0	1	0	0	0	9492	1203	42	5	19	5	MDN1	6	90353740	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10		90353740	80761327	26	5504											
REV3L	5980	hgsc.bcm.edu	37	chr6	111665249	111665249	+	Splice_Site	DEL	A	A	-													gtagttagttagagccacctAaaaaaaaaggcaagacacca					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		-	111665249	A	-	111665249	8	5	56	1	0	1	0	1	0	0	1	0	13332	377	13	0		0	REV3L	6	111665249	Splice_Site	DEL	A	TCGA-KO-8406-01A-11D-2310-10	21311509	111665249	59449818	27	5505											
ECT2L	345930	broad.mit.edu	37	chr6	139164271	139164271	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgctacttatgggacGctgaatgaacccaaaacaga	10	10	0	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	139164271	G	A	139164271	2	1	56	1	0	0	0	0	0	0	0	1	4939	1074	38	1		1	ECT2L	6	139164271	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10	27499022	139164271	31950796	28	5506											
NCF1	653361	mdanderson.org	37	chr7	74193718	74193718	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcccgctgtccccacctcctCgacttcttcaaggtgcgccc	7	20	2	0	rs79234723		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	74193718	C	T	74193718	2	4	56	1	0	0	0	0	0	0	0	1	10295	871	31	1		1	NCF1	7	74193718	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10		74193718	84944945	29	5507											
TRRAP	8295	broad.mit.edu	37	chr7	98522828	98522828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgatcaaatgcttcctggtgGccatgatgagcctggaggac	13	9	1	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	98522828	G	T	98522828	3	4	56	1	0	0	0	0	1	0	0	0	16706	1203	42	5	2999	5	TRRAP	7	98522828	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	24329110	98522828	60615835	30	5508											
ATP6V0E2	155066	mdanderson.org	37	chr7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgcccggctggggacccGcgcacctgcagcgcccgctg	15	19	0	0	rs79377053		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	149571095	G	A	149571095	3	1	56	1	0	0	0	0	1	0	0	0	1180	1087	38	1	90	1	ATP6V0E2	7	149571095	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	51048267	149571095	9567568	31	5509											
MLL3	58508	mdanderson.org	37	chr7	151945291	151945291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacacaaccctcaattgtaGgagtcatttcagagtccatc	6	12	4	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	151945291	G	A	151945291	3	1	56	1	0	0	0	0	1	0	0	0	9699	1000	35	4	12691	4	MLL3	7	151945291	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	2374196	151945291	7193372	32	5510											
EGR3	1960	broad.mit.edu	37	chr8	22548132	22548132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgctgcgcgcaaacttgcGcccgcagaactcgcaggcaa	12	15	0	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	22548132	G	T	22548132	3	4	56	1	0	0	0	0	1	0	0	0	5010	1087	38	5	149	5	EGR3	8	22548132	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10		22548132	123815890	33	5511											
PLEC	5339	mdanderson.org	37	chr8	144997656	144997656	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctccgcctgtgcccgccgCgccgcctcttgctcggcctc	11	21	1	0	rs7016416	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	144997656	C	T	144997656	2	4	56	1	0	0	0	0	0	0	0	1	12132	755	27	1		1	PLEC	8	144997656	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	122449524	144997656	1366366	34	5512											
FOXD4	2298	broad.mit.edu	37	chr9	117398	117400	+	In_Frame_Del	DEL	GGC	GGC	-													tggggtaggcccccgggactGgctgcggcggggcaggggcc					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	GGC	GGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		-	117400	GGC	-	117398	7	5	56	1	0	1	0	1	0	0	0	0	6048	1348	47	0	601	0	FOXD4	9	117398	In_Frame_Del	DEL	GGC	TCGA-KO-8406-01A-11D-2310-10		117398	141096033	35	5513											
MED27	9442	mdanderson.org	37	chr9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcggaaatccctccatgtcGggggaaggccgtcctgcaga	13	12	0	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	134735980	G	A	134735980	3	1	56	1	0	0	0	0	1	0	0	0	9522	1116	39	1	58	1	MED27	9	134735980	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	134618582	134735980	6477451	36	5514											
LCN1	3933	broad.mit.edu	37	chr9	138415126	138415127	+	Frame_Shift_Ins	INS	-	-	G													ccgtcctggagaaaactgacINSgagccgggaaaatacacggc					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	138415127	-	G	138415126	7	5	56	1	0	1	1	0	0	0	0	0	8742	535	19	0	280	0	LCN1	9	138415126	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	3679146	138415126	2798305	37	5515											
KCNT1	57582	hgsc.bcm.edu	37	chr9	138678160	138678160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccacacgggcggcggtgacCccgcagagcacccactgcta	13	17	0	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	138678160	C	T	138678160	3	4	56	1	0	0	0	0	1	0	0	0	8152	623	22	3	3409	3	KCNT1	9	138678160	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	263034	138678160	2535271	38	5516											
CARD9	64170	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr9	139262146	139262146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctccacggccagtagctgCgcctcacactggaacacctg	9	18	1	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	139262146	C	T	139262146	2	4	56	1	0	0	0	0	0	0	0	1	2677	755	27	1		1	CARD9	9	139262146	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	583986	139262146	1951285	39	5517											
MUC2	4583	mdanderson.org	37	chr11	1092860	1092860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcacacagaccccaacaaCgacacccatcaccaccacca	4	21	1	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	1092860	C	T	1092860	3	4	56	1	0	0	0	0	1	0	0	0	10053	536	19	1	4797	1	MUC2	11	1092860	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		1092860	133913656	40	5518			3	55		3	3	495	N	T_C	7.141837e-07
MUC2	4583	mdanderson.org	37	chr11	1092928	1092928	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggcacacagaccccaacaTcgacacccatcaccaccacc	4	22	1	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	1092928	T	A	1092928	3	1	56	1	0	0	0	0	1	0	0	0	10053	1435	50	5	4865	5	MUC2	11	1092928	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	68	1092928	133913588	41	5519			3	55		3	3	495	N	T_C	7.141837e-07
MUC2	4583	mdanderson.org	37	chr11	1093354	1093354	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaccccgacacccatcTccaccaccactacggtgacc	4	23	1	1	rs56290335	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	1093354	T	A	1093354	3	1	56	1	0	0	0	0	1	0	0	0	10053	1551	54	5	5291	5	MUC2	11	1093354	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	426	1093354	133913162	42	5520			3	55		3	3	495	N	T_C	7.141837e-07
FOLH1	2346	bcgsc.ca	37	chr11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacagcctctgcaattccaCgcctataagcatattctgaa	5	13	2	1	rs116795343	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	49204779	C	T	49204779	3	4	56	1	0	0	0	0	1	0	0	0	6028	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	48111425	49204779	85801737	43	5521											
OR5M9	390162	mdanderson.org	37	chr11	56230790	56230790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgatcatgtaaaccgctaGgaacaccacaaaaaagagaa	8	8	1	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	56230790	G	T	56230790	3	4	56	1	0	0	0	0	1	0	0	0	11256	991	35	5	846	5	OR5M9	11	56230790	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	7026011	56230790	78775726	44	5522											
SLC22A11	55867	hgsc.bcm.edu;mdanderson.org	37	chr11	64326666	64326666	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagtccatcttcatgtcCgggatcctggtgggctcctt	11	13	2	0	rs145210367		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	64326666	C	T	64326666	2	4	56	1	0	0	0	0	0	0	0	1	14540	639	23	1		1	SLC22A11	11	64326666	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	8095876	64326666	70679850	45	5523											
KLC2	64837	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	66033395	66033395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcaggcggggagaccGccgcagcagccgagacatgg	18	12	0	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	66033395	G	A	66033395	3	1	56	1	0	0	0	0	1	0	0	0	8395	1087	38	1	1560	1	KLC2	11	66033395	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	1706729	66033395	68973121	46	5524											
CDK2AP2	10263	broad.mit.edu	37	chr11	67274865	67274865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgctccatggcgctcttgCtgccagcataggtaggccgg	15	13	1	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	67274865	C	T	67274865	3	4	56	1	0	0	0	0	1	0	0	0	3168	797	28	4	104	4	CDK2AP2	11	67274865	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	1241470	67274865	67731651	47	5525											
FZD4	8322	mdanderson.org	37	chr11	86662232	86662232	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcttcacccaaccatttccTctcttctctctctttacctt	2	17	4	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	86662232	T	C	86662232	2	2	56	1	0	0	0	0	0	0	0	1	6184	1548	54	2		2	FZD4	11	86662232	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	19387367	86662232	48344284	48	5526											
SORL1	6653	ucsc.edu	37	chr11	121323057	121323057	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacatggcgacacggagcaGcaggagggagtcgcgactcc	16	11	0	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	121323057	G	T	121323057	3	4	56	1	0	0	0	0	1	0	0	0	15032	971	34	5	19	5	SORL1	11	121323057	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	34660825	121323057	13683459	49	5527											
PZP	5858	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr12	9315213	9315213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgaggcacaggtcatagaaCtgaaagtcttttcttgctca	9	9	4	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	9315213	C	A	9315213	3	1	56	1	0	0	0	0	1	0	0	0	12961	565	20	5	1740	5	PZP	12	9315213	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		9315213	124536682	50	5528											
TAS2R31	259290	mdanderson.org	37	chr12	11183793	11183793	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagaccgccagagcagtgaGaatctggtcagcaaaagaga	14	8	2	4	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	11183793	G	C	11183793	3	2	56	1	0	0	0	0	1	0	0	0	15675	942	33	5	791	5	TAS2R31	12	11183793	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	1868580	11183793	122668102	51	5529			4	56		2	2	17	N	G_A	3.876302e-05
TAS2R31	259290	mdanderson.org	37	chr12	11183809	11183809	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagaatctggtcagcaaaAgagatcttttgtctcttgac	10	7	4	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	11183809	A	G	11183809	2	3	56	1	0	0	0	0	0	0	0	1	15675	59	3	2		2	TAS2R31	12	11183809	Silent	SNP	A	TCGA-KO-8406-01A-11D-2310-10	16	11183809	122668086	52	5530			4	56		2	2	17	N	G_A	3.876302e-05
GNS	2799	broad.mit.edu	37	chr12	65152902	65152902	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcctggtcgtccgtgaggAgcagcaccacgttgggcctc	14	14	0	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	65152902	A	G	65152902	3	3	56	1	0	0	0	0	1	0	0	0	6606	304	11	2	1559	2	GNS	12	65152902	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	53969093	65152902	68698993	53	5531											
DCN	1634	broad.mit.edu	37	chr12	91550949	91550949	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaattcctgagctcttcagCggattggtgcccagttctac	9	12	4	1	rs147765043	alternate_allele	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	91550949	C	T	91550949	2	4	56	1	0	0	0	0	0	0	0	1	4329	755	27	1		1	DCN	12	91550949	Silent	SNP	C	TCGA-KO-8406-01A-11D-2310-10	26398047	91550949	42300946	54	5532											
TRAFD1	10906	broad.mit.edu	37	chr12	112578793	112578794	+	Frame_Shift_Del	DEL	GA	GA	-													actcaccctgaagtttgtggGagagagggggaggaaaagag					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		-	112578794	GA	-	112578793	7	5	56	1	0	1	0	1	0	0	0	0	16552	1161	41	0	422	0	TRAFD1	12	112578793	Frame_Shift_Del	DEL	GA	TCGA-KO-8406-01A-11D-2310-10	21027844	112578793	21273102	55	5533											
RNFT2	84900	mdanderson.org	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	117187907	T	C	117187907	2	2	56	1	0	0	0	0	0	0	0	1	13597	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	4609114	117187907	16663988	56	5534											
HNF1A	6927	broad.mit.edu	37	chr12	121437368	121437369	+	Frame_Shift_Ins	INS	-	-	C													accaccctccacgtccccagINSccaggaccctgccagcatcc					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	121437369	-	C	121437368	7	5	56	1	0	1	1	0	0	0	0	0	7309	971	34	0	1740	0	HNF1A	12	121437368	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10	4249461	121437368	12414527	57	5535											
PSPC1	55269	mdanderson.org	37	chr13	20279800	20279800	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aataatgtttatgatacattAccactgctccattatctggc	5	9	1	1	rs199978034		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	20279800	A	G	20279800	5	3	56	1	0	0	0	0	0	0	1	0	12805	405	14	2	191	2	PSPC1	13	20279800	Splice_Site	SNP	A	TCGA-KO-8406-01A-11D-2310-10		20279800	94890078	58	5536											
IPO5	3843	mdanderson.org	37	chr13	98670796	98670796	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tatgcatctttgatgatgtcAtagaacactgtagtccagcc	8	9	2	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	98670796	A	T	98670796	3	4	56	1	0	0	0	0	1	0	0	0	7857	217	8	5	2822	5	IPO5	13	98670796	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	78390996	98670796	16499082	59	5537											
EPB42	2038	broad.mit.edu	37	chr15	43501531	43501531	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catacacaggtcggcctcggCcggtgagccactgccgcagg	14	15	0	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	43501531	C	A	43501531	3	1	56	1	0	0	0	0	1	0	0	0	5197	739	26	5	1334	5	EPB42	15	43501531	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		43501531	59029861	60	5538											
C16orf54	283897	hgsc.bcm.edu	37	chr16	29755786	29755787	+	Frame_Shift_Ins	INS	-	-	G													cagctcaccaggcctgtggcINSggggggcctcccctcccagg					novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	29755787	-	G	29755786	7	5	56	1	0	1	1	0	0	0	0	0	1832	768	27	0	191	0	C16orf54	16	29755786	Frame_Shift_Ins	INS	-	TCGA-KO-8406-01A-11D-2310-10		29755786	60598967	61	5539											
CNGB1	1258	broad.mit.edu	37	chr16	57984389	57984389	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggcatcctcccagggcggTtcaacctcctctaggacaag	11	14	2	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	57984389	T	C	57984389	2	2	56	1	0	0	0	0	0	0	0	1	3629	1722	60	2		2	CNGB1	16	57984389	Silent	SNP	T	TCGA-KO-8406-01A-11D-2310-10	28228603	57984389	32370364	62	5540											
AP2B1	163	broad.mit.edu	37	chr17	34009754	34009754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctctggccatccatacaCcactgatgccaaaccagagc	6	17	1	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	34009754	C	T	34009754	3	4	56	1	0	0	0	0	1	0	0	0	743	507	18	3	2431	3	AP2B1	17	34009754	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		34009754	47185456	63	5541											
KRT40	125115	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	39140079	39140079	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tagggcaacaggacacagacCttttgttggagatcttcaat	10	8	2	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	39140079	C	A	39140079	3	1	56	1	0	0	0	0	1	0	0	0	8539	695	24	5	876	5	KRT40	17	39140079	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	5130325	39140079	42055131	64	5542											
MAPT	4137	broad.mit.edu	37	chr17	44096020	44096020	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaaatctgagaagcttgActtcaaggacagagtccagt	10	7	2	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	44096020	A	G	44096020	3	3	56	1	0	0	0	0	1	0	0	0	9374	275	10	2	2089	2	MAPT	17	44096020	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	4955941	44096020	37099190	65	5543											
PDCD2L	84306	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	34895578	34895578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcccaccgtggctgcgCccaggcccgtgtgtcagcgc	13	18	2	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	34895578	C	T	34895578	3	4	56	1	0	0	0	0	1	0	0	0	11699	739	26	3	139	3	PDCD2L	19	34895578	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10		34895578	24233405	66	5544											
MYH14	79784	mdanderson.org	37	chr19	50713655	50713655	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	accatgtcggtgcccgggcgGaaggcgccccccaggccggg	17	16	0	0	rs8106196	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	50713655	G	C	50713655	2	2	56	1	0	0	0	0	0	0	0	1	10111	1161	41	5		5	MYH14	19	50713655	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10	15818077	50713655	8415328	67	5545											
SPIB	6689	broad.mit.edu	37	chr19	50931537	50931537	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgagatccgcaaggtcaagCgcaagctcacctaccagttc	10	14	2	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	50931537	C	A	50931537	3	1	56	1	0	0	0	0	1	0	0	0	15150	768	27	5	755	5	SPIB	19	50931537	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	217882	50931537	8197446	68	5546											
GP6	51206	mdanderson.org	37	chr19	55525596	55525596	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attctcccacctcagcccccTgagttgctgggagtataggg	11	13	2	1	rs1654412	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	55525596	T	C	55525596	3	2	56	1	0	0	0	0	1	0	0	0	6641	1579	55	2	149	2	GP6	19	55525596	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10	4594059	55525596	3603387	69	5547											
SIRPB1	10326	mdanderson.org	37	chr20	1559300	1559300	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaactgatacggacttTtcaggctgaatcacctgtag	10	10	2	2	rs202017659	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	1559300	T	G	1559300	3	3	56	1	0	0	0	0	1	0	0	0	14431	1838	64	5	1095	5	SIRPB1	20	1559300	Missense_Mutation	SNP	T	TCGA-KO-8406-01A-11D-2310-10		1559300	61466220	70	5548											
DSTN	11034	mdanderson.org	37	chr20	17581509	17581509	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttgtctcagtgcagacAaaaagtgcatcattgtagaa	8	6	2	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	17581509	A	G	17581509	3	3	56	1	0	0	0	0	1	0	0	0	4821	131	5	4	136	4	DSTN	20	17581509	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	16022209	17581509	45444011	71	5549											
PRPF6	24148	broad.mit.edu	37	chr20	62648170	62648170	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattgaggaggaagatcggaAgcatacctggatggaggatg	17	4	0	2	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	62648170	A	G	62648170	3	3	56	1	0	0	0	0	1	0	0	0	12663	72	3	2	1665	2	PRPF6	20	62648170	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	45066661	62648170	377350	72	5550											
FTCD	10841	mdanderson.org	37	chr21	47558473	47558473	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caccgggccagttcctgcagGgccggccacagcgaggccac	14	17	0	0	rs1047179	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	47558473	G	C	47558473	2	2	56	1	0	0	0	0	0	0	0	1	6133	1219	43	5		5	FTCD	21	47558473	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10		47558473	571422	73	5551											
GGTLC2	91227	mdanderson.org	37	chr22	22988911	22988911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcccgagttctacacgccGgttgatgggggcactgctca	13	12	2	1	rs9612135	byfrequency	TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		A	22988911	G	A	22988911	2	1	56	1	0	0	0	0	0	0	0	1	6422	1103	39	1		1	GGTLC2	22	22988911	Silent	SNP	G	TCGA-KO-8406-01A-11D-2310-10		22988911	28315655	74	5552											
SGSM1	129049	broad.mit.edu	37	chr22	25294500	25294500	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaacgaggtgtcccctGtgtcttccagcggcgtcacc	11	16	2	0	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	25294500	G	T	25294500	3	4	56	1	0	0	0	0	1	0	0	0	14319	1377	48	5	2827	5	SGSM1	22	25294500	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10	2305589	25294500	26010066	75	5553											
TUBGCP6	85378	ucsc.edu	37	chr22	50666367	50666367	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaagtttcttgaagagaaAaccaatggtgaggaggctca	12	7	2	3	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	50666367	A	G	50666367	3	3	56	1	0	0	0	0	1	0	0	0	16876	14	1	4	4162	4	TUBGCP6	22	50666367	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	25371867	50666367	638199	76	5554											
VCX3B	425054	mdanderson.org	37	chrX	8434368	8434368	+	Missense_Mutation	SNP	G	G	C													aaccactgagtcaggagagcGagatggaagaaccactgagt					rs199956874		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		C	8434368	G	C	8434368	3	2	56	1	0	0	0	0	1	0	0	0	17251	1059	37	5	605	5	VCX3B	23	8434368	Missense_Mutation	SNP	G	TCGA-KO-8406-01A-11D-2310-10		8434368	146836192	77	5555	141	2									
VCX3B	425054	mdanderson.org	37	chrX	8434371	8434371	+	Missense_Mutation	SNP	A	A	G													cactgagtcaggagagcgagAtggaagaaccactgagtcag					rs113934664		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		G	8434371	A	G	8434371	3	3	56	1	0	0	0	0	1	0	0	0	17251	333	12	4	608	4	VCX3B	23	8434371	Missense_Mutation	SNP	A	TCGA-KO-8406-01A-11D-2310-10	3	8434371	146836189	78	5556	141	2									
SMARCA1	6594	broad.mit.edu	37	chrX	128614736	128614736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccaggagctcaaataagCgtggtgggaaaaattgaaaa	11	5	1	1	novel		TCGA-KO-8406-01A-11D-2310-10	TCGA-KO-8406-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c29f6ed6-880d-4f03-977e-1087738e5e60	20a022aa-6b2c-4b4d-9a10-9dad1867a342		T	128614736	C	T	128614736	3	4	56	1	0	0	0	0	1	0	0	0	14866	768	27	1	804	1	SMARCA1	23	128614736	Missense_Mutation	SNP	C	TCGA-KO-8406-01A-11D-2310-10	120180365	128614736	26655824	79	5557											
TAS1R3	83756	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr1	1268041	1268041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcagtgtgactgcatcaCgctgcagaacgtgagcgcag	13	13	1	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	1268041	C	T	1268041	3	4	57	1	0	0	0	0	1	0	0	0	15665	536	19	1	1140	1	TAS1R3	1	1268041	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		1268041	247982580	1	5558											
ATP13A2	23400	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	17331882	17331882	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcacctctttgtctcttAtttcgataacgagtgtttcg	6	11	3	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	17331882	A	G	17331882	3	3	57	1	0	0	0	0	1	0	0	0	1128	449	16	4	3611	4	ATP13A2	1	17331882	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	16063841	17331882	231918739	2	5559											
HIPK1	204851	broad.mit.edu	37	chr1	114483676	114483676	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tattaaaatcttgaagaaccAcccctcctatgccagacaag	5	12	1	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	114483676	A	C	114483676	3	2	57	1	0	0	0	0	1	0	0	0	7174	159	6	5	673	5	HIPK1	1	114483676	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	97151794	114483676	134766945	3	5560											
SYT11	23208	bcgsc.ca	37	chr1	155837927	155837927	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcatatacccagagacccTcagcaacaagaagaaaatca	6	12	2	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	155837927	T	C	155837927	3	2	57	1	0	0	0	0	1	0	0	0	15568	1551	54	2	212	2	SYT11	1	155837927	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	41354251	155837927	93412694	4	5561											
BCAN	63827	hgsc.bcm.edu	37	chr1	156616757	156616758	+	In_Frame_Ins	INS	-	-	GGGAGG													gactttcctgtcccggggccINSgggaggcagaggtgctggtg					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		GGGAGG	156616758	-	GGGAGG	156616757	7	5	57	1	0	1	1	0	0	0	0	0	1349	643	23	0	262	0	BCAN	1	156616757	In_Frame_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	778830	156616757	92633864	5	5562											
METTL13	51603	ucsc.edu	37	chr1	171753605	171753605	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggacagccccactgtgaaAccatcgcgggacaatcattt	10	12	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	171753605	A	G	171753605	2	3	57	1	0	0	0	0	0	0	0	1	9574	40	2	2		2	METTL13	1	171753605	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10	15136848	171753605	77497016	6	5563											
ATP2B4	493	broad.mit.edu	37	chr1	203693038	203693039	+	Frame_Shift_Ins	INS	-	-	T													tggaatttgggggtaaacccINSttcagttgtacaagcctcag					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	203693039	-	T	203693038	7	5	57	1	0	1	1	0	0	0	0	0	1146	668	24	0	3124	0	ATP2B4	1	203693038	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	31939433	203693038	45557583	7	5564											
EIF5B	9669	bcgsc.ca	37	chr2	99995848	99995848	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaattggggccaccaatgTtcctcttgaagctattaatg	8	9	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	99995848	T	C	99995848	3	2	57	1	0	0	0	0	1	0	0	0	5083	1725	60	2	2064	2	EIF5B	2	99995848	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10		99995848	143203525	8	5565											
C2orf49	79074	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	105956200	105956200	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgagattaaaaatgagaCtaaaaggtactttttggtgg	10	3	0	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	105956200	C	A	105956200	3	1	57	1	0	0	0	0	1	0	0	0	2191	565	20	5	266	5	C2orf49	2	105956200	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	5960352	105956200	137243173	9	5566											
NDUFS1	4719	broad.mit.edu	37	chr2	206988916	206988916	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctagtagaagcttcagcatAtggatggttcctctactgcc	9	11	2	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	206988916	A	G	206988916	3	3	57	1	0	0	0	0	1	0	0	0	10370	449	16	4	10	4	NDUFS1	2	206988916	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	101032716	206988916	36210457	10	5567											
KIF1A	547	ucsc.edu	37	chr2	241697840	241697840	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgccggtcaccacgttgTcacagtcctcgatgacactg	9	16	2	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	241697840	T	C	241697840	3	2	57	1	0	0	0	0	1	0	0	0	8344	1667	58	2	2672	2	KIF1A	2	241697840	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	34708924	241697840	1501533	11	5568											
VILL	50853	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	38040486	38040486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtcggccgcgttcaagcaGctcttccggacttggtctga	13	12	3	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	38040486	G	T	38040486	3	4	57	1	0	0	0	0	1	0	0	0	17271	962	34	5	1060	5	VILL	3	38040486	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		38040486	159981944	12	5569											
MYRIP	25924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	40211564	40211564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcatcccctggaggctacCgtgctcccgctgccctctgg	11	18	1	0	rs142520074		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	40211564	C	T	40211564	3	4	57	1	0	0	0	0	1	0	0	0	10178	652	23	1	879	1	MYRIP	3	40211564	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	2171078	40211564	157810866	13	5570											
ASTE1	28990	mdanderson.org;bcgsc.ca	37	chr3	130743262	130743262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggactgttggtattcttCcatggaacagcagagaagtt	12	7	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	130743262	C	T	130743262	3	4	57	1	0	0	0	0	1	0	0	0	1066	864	30	3	1166	3	ASTE1	3	130743262	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	90531698	130743262	67279168	14	5571											
CCNL1	57018	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	156866283	156866283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttaaggtgaggagaaccaTgattatgatgtcttcgaggg	13	6	1	4	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	156866283	T	C	156866283	3	2	57	1	0	0	0	0	1	0	0	0	2960	1464	51	4	256	4	CCNL1	3	156866283	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	26123021	156866283	41156147	15	5572											
MUC4	4585	mdanderson.org	37	chr3	195505801	195505801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatGctgaggaagtgtcggtgaca	19	6	0	3	rs200432267		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	195505801	G	A	195505801	3	1	57	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195505801	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	38639518	195505801	2516629	16	5573											
MUC4	4585	mdanderson.org	37	chr3	195507399	195507399	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagtgtcCgtgacaggaagacgggtggt	19	5	0	3	rs71187731	alternate_allele	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	195507399	C	T	195507399	2	4	57	1	0	0	0	0	0	0	0	1	10056	639	23	1		1	MUC4	3	195507399	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	1598	195507399	2515031	17	5574											
DCUN1D4	23142	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr4	52779712	52779712	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagggccagttttgttggacGagtttgtggagtggtataaa	15	4	0	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	52779712	G	A	52779712	3	1	57	1	0	0	0	0	1	0	0	0	4348	1059	37	1	883	1	DCUN1D4	4	52779712	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		52779712	138374564	18	5575											
DNAH5	1767	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	13708238	13708238	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcttatacgtacttttttCcaccaagcagggattctagc	8	10	1	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	13708238	C	T	13708238	4	4	57	1	0	0	0	0	0	1	0	0	4641	856	30	3	558	3	DNAH5	5	13708238	Nonsense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		13708238	167207022	19	5576											
THBS4	7060	broad.mit.edu	37	chr5	79331430	79331431	+	Frame_Shift_Ins	INS	-	-	C													gcggtggctagcggcaggcgINScccaggccaccccccagggt					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	79331431	-	C	79331430	7	5	57	1	0	1	1	0	0	0	0	0	15960	1087	38	0	72	0	THBS4	5	79331430	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	65623192	79331430	101583830	20	5577											
PCDHA8	56140	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr5	140222358	140222358	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcgcgagacgcggacgcGcaggagaacgcgctggtgtc	17	12	1	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	140222358	G	A	140222358	2	1	57	1	0	0	0	0	0	0	0	1	11609	1074	38	1		1	PCDHA8	5	140222358	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	60890928	140222358	40692902	21	5578											
RANBP9	10048	broad.mit.edu	37	chr6	13638047	13638047	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattacttacctggtgaAgttattaacttgctgtgatc	8	6	0	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	13638047	A	G	13638047	3	3	57	1	0	0	0	0	1	0	0	0	13124	72	3	2	543	2	RANBP9	6	13638047	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10		13638047	157477020	22	5579											
HLA-C	3107	mdanderson.org	37	chr6	31238866	31238866	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacctgcgcgctgcagcgtCtccttcccgttctccaggta	10	16	2	0	rs17413678	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	31238866	C	G	31238866	3	3	57	1	0	0	0	0	1	0	0	0	7255	912	32	5	521	5	HLA-C	6	31238866	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	17600819	31238866	139876201	23	5580											
COL12A1	1303	broad.mit.edu;mdanderson.org	37	chr6	75843574	75843574	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttactacaagaaataattacCagttcctctggaccacctgc	5	12	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	75843574	C	A	75843574	2	1	57	1	0	0	0	0	0	0	0	1	3698	608	21	5		5	COL12A1	6	75843574	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	44604708	75843574	95271493	24	5581											
SYTL3	94120	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	159173001	159173001	+	Missense_Mutation	SNP	G	G	A													gcccgacagatcctcccaggGaaagcgcaagactggagtcc					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	159173001	G	A	159173001	3	1	57	1	0	0	0	0	1	0	0	0	15585	1174	41	3	902	3	SYTL3	6	159173001	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	83329427	159173001	11942066	25	5582	142	2									
SYTL3	94120	hgsc.bcm.edu;ucsc.edu	37	chr6	159173011	159173011	+	Silent	SNP	G	G	A													tcctcccagggaaagcgcaaGactggagtccaaaggaacac					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	159173011	G	A	159173011	2	1	57	1	0	0	0	0	0	0	0	1	15585	933	33	4		4	SYTL3	6	159173011	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	10	159173011	11942056	26	5583	142	2									
ISPD	729920	broad.mit.edu	37	chr7	16341081	16341081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccgcatagagatctcgtTtgtaggtcacctaaaggaca	10	10	2	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	16341081	T	C	16341081	3	2	57	1	0	0	0	0	1	0	0	0	7925	1841	64	4	579	4	ISPD	7	16341081	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10		16341081	142797582	27	5584											
PEX1	5189	bcgsc.ca	37	chr7	92116845	92116845	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcctctttggattttgaaAgctttcatatctgaaaaaag	6	7	4	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	92116845	A	G	92116845	3	3	57	1	0	0	0	0	1	0	0	0	11815	72	3	2	77	2	PEX1	7	92116845	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	75775764	92116845	67021818	28	5585											
ZAN	7455	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr7	100390083	100390083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagagagcaagaggagctgcGttgccaggtcctcagtgggt	16	8	1	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	100390083	G	A	100390083	3	1	57	1	0	0	0	0	1	0	0	0	17619	1145	40	1	7930	1	ZAN	7	100390083	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	8273238	100390083	58748580	29	5586											
SPAM1	6677	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	123594255	123594255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taaaattgggaaaattacttCggccaaatcacttgtggggt	10	6	1	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	123594255	C	T	123594255	3	4	57	1	0	0	0	0	1	0	0	0	15086	875	31	1	633	1	SPAM1	7	123594255	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	23204172	123594255	35544408	30	5587											
NCAPG2	54892	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	158485614	158485614	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acacagaagcaagaatcacaGatgtaattgcataaattatt	6	6	1	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	158485614	G	A	158485614	3	1	57	1	0	0	0	0	1	0	0	0	10287	942	33	4	3229	4	NCAPG2	7	158485614	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	34891359	158485614	653049	31	5588											
GGH	8836	mdanderson.org	37	chr8	63951312	63951312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccagcacgcacagcaggcAgcccggactggccatggcgc	14	17	0	0	rs1800909	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	63951312	A	G	63951312	3	3	57	1	0	0	0	0	1	0	0	0	6413	188	7	2	976	2	GGH	8	63951312	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10		63951312	82412710	32	5589											
WWP1	11059	broad.mit.edu	37	chr8	87414376	87414376	+	Frame_Shift_Del	DEL	G	G	-													tccgtctcaggttgctgccaGacccaaaaatacaccagctc					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		-	87414376	G	-	87414376	7	5	57	1	0	1	0	1	0	0	0	0	17521	942	33	0	690	0	WWP1	8	87414376	Frame_Shift_Del	DEL	G	TCGA-KO-8407-01A-11D-2310-10	23463064	87414376	58949646	33	5590											
LRRC6	23639	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	133673863	133673863	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcattccgtctaataagAtcttctgtgactggaagaaa	8	8	4	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	133673863	A	T	133673863	3	4	57	1	0	0	0	0	1	0	0	0	9088	330	12	5	1423	5	LRRC6	8	133673863	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	46259487	133673863	12690159	34	5591											
FAM154A	158297	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	18941779	18941779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catattctcttcactcgggaCgaactggtcatactggtgga	10	10	3	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	18941779	C	T	18941779	3	4	57	1	0	0	0	0	1	0	0	0	5506	536	19	1	1155	1	FAM154A	9	18941779	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		18941779	122271652	35	5592											
MAMDC4	158056	mdanderson.org	37	chr9	139752899	139752899	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggctggagccacctggccTggcccggcctgggcggatac	17	14	0	0	rs2275156	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	139752899	T	G	139752899	3	3	57	1	0	0	0	0	1	0	0	0	9281	1580	55	5	2808	5	MAMDC4	9	139752899	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	120811120	139752899	1460532	36	5593											
ENTPD2	954	broad.mit.edu	37	chr9	139946006	139946006	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccaggtagaggggtgtGcccgcgtgtctctctttggg	16	11	2	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	139946006	G	T	139946006	2	4	57	1	0	0	0	0	0	0	0	1	5178	1306	46	5		5	ENTPD2	9	139946006	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	193107	139946006	1267425	37	5594											
ADD3	120	bcgsc.ca	37	chr10	111890182	111890182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctaacccatttagtcatcTcacagaaggagaacttgaag	7	10	2	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	111890182	T	C	111890182	3	2	57	1	0	0	0	0	1	0	0	0	306	1551	54	2	1716	2	ADD3	10	111890182	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10		111890182	23644565	38	5595											
SYT8	90019	mdanderson.org	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	1858572	C	T	1858572	3	4	57	1	0	0	0	0	1	0	0	0	15581	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		1858572	133147944	39	5596											
SYT9	143425	broad.mit.edu	37	chr11	7439309	7439309	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atagtctttgatgtccctccCgagaacattgaccaaatcca	6	12	1	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	7439309	C	T	7439309	2	4	57	1	0	0	0	0	0	0	0	1	15582	639	23	1		1	SYT9	11	7439309	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	5580737	7439309	127567207	40	5597											
QSER1	79832	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	32954825	32954825	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcccctgacccaaagtcttAtgctgaaagaaagcttgact	7	11	1	4	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	32954825	A	T	32954825	3	4	57	1	0	0	0	0	1	0	0	0	12974	449	16	5	1640	5	QSER1	11	32954825	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	25515516	32954825	102051691	41	5598											
CAPRIN1	4076	broad.mit.edu	37	chr11	34118204	34118204	+	Frame_Shift_Del	DEL	T	T	-													atgaatggataccggggcccTgccaatggattcagaggtaa					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		-	34118204	T	-	34118204	7	5	57	1	0	1	0	1	0	0	0	0	2660	1567	55	0	1942	0	CAPRIN1	11	34118204	Frame_Shift_Del	DEL	T	TCGA-KO-8407-01A-11D-2310-10	1163379	34118204	100888312	42	5599											
OR5A1	219982	mdanderson.org	37	chr11	59211421	59211421	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgtttgggacagcccttttCgtgtacttgcgacccagctc	10	13	0	0	rs17591107	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	59211421	C	T	59211421	2	4	57	1	0	0	0	0	0	0	0	1	11218	883	31	1		1	OR5A1	11	59211421	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	25093217	59211421	75795095	43	5600											
FRMD8	83786	broad.mit.edu	37	chr11	65172422	65172423	+	Frame_Shift_Ins	INS	-	-	C													ccaggacagtgcgactggctINScgccctcggaccccagctcc					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	65172423	-	C	65172422	7	5	57	1	0	1	1	0	0	0	0	0	6108	1551	54	0	1193	0	FRMD8	11	65172422	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	5961001	65172422	69834094	44	5601											
IQSEC3	440073	mdanderson.org	37	chr12	248071	248071	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gccaactgcctgggcgctcaGacggtccaggcccccgcaga	13	17	1	2	rs77474006	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	248071	G	C	248071	3	2	57	1	0	0	0	0	1	0	0	0	7880	933	33	5	1556	5	IQSEC3	12	248071	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		248071	133603824	45	5602											
PRB4	5545	mdanderson.org	37	chr12	11461742	11461742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctccttgtgggggtggtcCttgtggctttcctggaggag	16	9	0	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	11461742	C	T	11461742	3	4	57	1	0	0	0	0	1	0	0	0	12534	690	24	4	572	4	PRB4	12	11461742	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	11213671	11461742	122390153	46	5603											
DDX11	1663	mdanderson.org	37	chr12	31242999	31242999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgggcctgtccctattacGggagccgccttgccatccct	10	18	0	0	rs74617951		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	31242999	G	A	31242999	3	1	57	1	0	0	0	0	1	0	0	0	4375	1116	39	1	1090	1	DDX11	12	31242999	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	19781257	31242999	102608896	47	5604											
MLL2	8085	broad.mit.edu	37	chr12	49415604	49415605	+	Frame_Shift_Ins	INS	-	-	G													ttccaggctccacagtggcaINSggggatcttgtgctgatcgt					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	49415605	-	G	49415604	7	5	57	1	0	1	1	0	0	0	0	0	9698	188	7	0	44	0	MLL2	12	49415604	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	18172605	49415604	84436291	48	5605											
KRT6B	3854	mdanderson.org	37	chr12	52843581	52843581	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaagttgatctcatctgtAagagtgtctgccttggcttg	12	7	3	2	rs382894		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	52843581	A	G	52843581	2	3	57	1	0	0	0	0	0	0	0	1	8542	349	13	4		4	KRT6B	12	52843581	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10	3427977	52843581	81008314	49	5606											
CEP290	80184	broad.mit.edu	37	chr12	88443060	88443060	+	Frame_Shift_Del	DEL	T	T	-													actcccaattgttctgaaagTttttttaccttctcttctaa					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		-	88443060	T	-	88443060	7	5	57	1	0	1	0	1	0	0	0	0	3282	1722	60	0	102	0	CEP290	12	88443060	Frame_Shift_Del	DEL	T	TCGA-KO-8407-01A-11D-2310-10	35599479	88443060	45408835	50	5607											
BRAP	8315	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr12	112082340	112082340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagctcgttggtgagtttgGccacttttgtgtttagctga	13	6	0	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	112082340	G	A	112082340	3	1	57	1	0	0	0	0	1	0	0	0	1505	1203	42	3	340	3	BRAP	12	112082340	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	23639280	112082340	21769555	51	5608											
WDR66	144406	broad.mit.edu	37	chr12	122361543	122361543	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaagaaaacccaaagaggtAgcaagtcaaagctttcctta	7	8	1	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	122361543	A	G	122361543	3	3	57	1	0	0	0	0	1	0	0	0	17423	420	15	2	400	2	WDR66	12	122361543	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	10279203	122361543	11490352	52	5609											
PABPC3	5042	mdanderson.org	37	chr13	25671742	25671742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcttcttcacaggttccacGagtcatgtcaacgcagcgtg	10	12	4	0	rs140135080	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	25671742	G	A	25671742	3	1	57	1	0	0	0	0	1	0	0	0	11444	1058	37	1	1408	1	PABPC3	13	25671742	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		25671742	89498136	53	5610			1	57		2	2	18	N	G_C	4.667696e-05
PABPC3	5042	mdanderson.org	37	chr13	25671759	25671759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgagtcatgtcaacgcagCgtgttgctaacacatcaaca	8	12	3	0	rs115121649	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	25671759	C	T	25671759	3	4	57	1	0	0	0	0	1	0	0	0	11444	768	27	1	1425	1	PABPC3	13	25671759	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	17	25671759	89498119	54	5611			1	57		2	2	18	N	G_C	4.667696e-05
LECT1	11061	ucsc.edu	37	chr13	53313218	53313218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccgatggccccaaagagcAgcagcacagctcccgaaatg	10	16	0	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	53313218	A	G	53313218	3	3	57	1	0	0	0	0	1	0	0	0	8774	188	7	2	867	2	LECT1	13	53313218	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	27641459	53313218	61856660	55	5612											
ADAM21	8747	mdanderson.org	37	chr14	70924335	70924335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccagcatttcacttcccCggaagtggtgatccccttga	8	15	1	2	rs199920662	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	70924335	C	T	70924335	3	4	57	1	0	0	0	0	1	0	0	0	243	652	23	1	121	1	ADAM21	14	70924335	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		70924335	36425205	56	5613											
PRIMA1	145270	mdanderson.org	37	chr14	94245649	94245649	+	Silent	SNP	A	A	G													caggacttctggggctcaccAtgcgtcacctgtacacatgg					rs4905087	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	94245649	A	G	94245649	2	3	57	1	0	0	0	0	0	0	0	1	12581	214	8	4		4	PRIMA1	14	94245649	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10	23321314	94245649	13103891	57	5614	143	2									
PRIMA1	145270	mdanderson.org	37	chr14	94245652	94245652	+	Silent	SNP	C	C	T													gacttctggggctcaccatgCgtcacctgtacacatgggca					rs4900195	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	94245652	C	T	94245652	2	4	57	1	0	0	0	0	0	0	0	1	12581	755	27	1		1	PRIMA1	14	94245652	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	3	94245652	13103888	58	5615	143	2									
SPG11	80208	hgsc.bcm.edu;ucsc.edu	37	chr15	44881589	44881589	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atggcagggatgacagggtgGacctttgtggctgctgtgtt	17	6	0	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	44881589	G	A	44881589	2	1	57	1	0	0	0	0	0	0	0	1	15141	1161	41	3		3	SPG11	15	44881589	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10		44881589	57649803	59	5616											
CALML4	91860	broad.mit.edu	37	chr15	68489865	68489866	+	In_Frame_Ins	INS	-	-	CAT													cctttcttctccttgtccacINScatcaacatggctagaagaa					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		CAT	68489866	-	CAT	68489865	7	5	57	1	0	1	1	0	0	0	0	0	2613	507	18	0	192	0	CALML4	15	68489865	In_Frame_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	23608276	68489865	34041527	60	5617											
ASB7	140460	broad.mit.edu	37	chr15	101170058	101170058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcagacacaaacttgggtCgcttagaagacggacagact	13	9	0	4	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	101170058	C	T	101170058	3	4	57	1	0	0	0	0	1	0	0	0	1032	884	31	1	634	1	ASB7	15	101170058	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	32680193	101170058	1361334	61	5618											
TPSAB1	7177	mdanderson.org	37	chr16	1291160	1291160	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcacctgccccagccccagGccaggccctgcagcgagtgg	14	18	0	0	rs141519544	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	1291160	G	T	1291160	3	4	57	1	0	0	0	0	1	0	0	0	16528	1203	42	5	74	5	TPSAB1	16	1291160	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		1291160	89063593	62	5619			2	58		2	2	23	N	G_C	6.040507e-05
TPSAB1	7177	mdanderson.org	37	chr16	1291182	1291182	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggccctgcagcgagtgggCatcgtcgggggtcaggaggc	19	11	1	0	rs112531166		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	1291182	C	T	1291182	2	4	57	1	0	0	0	0	0	0	0	1	16528	697	25	4		4	TPSAB1	16	1291182	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	22	1291182	89063571	63	5620			2	58		2	2	23	N	G_C	6.040507e-05
PRSS36	146547	broad.mit.edu	37	chr16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggcccctggccgcgggGccttcccgcactctgagggg	16	17	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	31154780	G	T	31154780	3	4	57	1	0	0	0	0	1	0	0	0	12714	1203	42	5	1616	5	PRSS36	16	31154780	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	29863598	31154780	59199973	64	5621											
SYCE1L	100130958	mdanderson.org	37	chr16	77246517	77246517	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcaggtccggagcgccCccgaggtcggggccggcgag	21	13	0	0	rs62049594		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	77246517	C	A	77246517	3	1	57	1	0	0	0	0	1	0	0	0	15529	623	22	5	666	5	SYCE1L	16	77246517	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	46091737	77246517	13108236	65	5622											
PIGS	94005	bcgsc.ca	37	chr17	26882056	26882056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcattttggaggcagctggGgctgagcaatcccaaagagc	15	9	0	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	26882056	G	A	26882056	3	1	57	1	0	0	0	0	1	0	0	0	11978	1232	43	3	470	3	PIGS	17	26882056	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10		26882056	54313154	66	5623											
LRRC37B	114659	bcgsc.ca	37	chr17	30348140	30348140	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctgccagaatggcttttgCtgagtgcatagcaccagcgt	13	10	0	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	30348140	C	G	30348140	3	3	57	1	0	0	0	0	1	0	0	0	9066	812	28	5		5	LRRC37B	17	30348140	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	3466084	30348140	50847070	67	5624											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu	37	chr17	65909291	65909291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcctagaccgacctttgGcatcacttggaggtatgtac	9	11	2	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	65909291	G	A	65909291	3	1	57	1	0	0	0	0	1	0	0	0	1503	1203	42	3	5719	3	BPTF	17	65909291	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	35561151	65909291	15285919	68	5625											
FADS6	283985	mdanderson.org	37	chr17	72889685	72889685	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaggttccatgggctccgtGggttccatggactctgtggg	16	9	1	0	rs2683274	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	72889685	G	A	72889685	2	1	57	1	0	0	0	0	0	0	0	1	5411	1335	47	4		4	FADS6	17	72889685	Silent	SNP	G	TCGA-KO-8407-01A-11D-2310-10	6980394	72889685	8305525	69	5626											
SEPT9	10801	broad.mit.edu	37	chr17	75398360	75398361	+	Frame_Shift_Ins	INS	-	-	G													gtggagctctcgggccccaaINSggcggccgagccggtgtccc					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	75398361	-	G	75398360	7	5	57	1	0	1	1	0	0	0	0	0	14168	72	3	0	391	0	SEPT9	17	75398360	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	2508675	75398360	5796850	70	5627											
GPS1	2873	broad.mit.edu	37	chr17	80010268	80010268	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagtaggtcagacctcgTcctgcccggcacggccgggg	15	15	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	80010268	T	C	80010268	3	2	57	1	0	0	0	0	1	0	0	0	6790	1667	58	2	125	2	GPS1	17	80010268	Missense_Mutation	SNP	T	TCGA-KO-8407-01A-11D-2310-10	4611908	80010268	1184942	71	5628											
POTEC	388468	mdanderson.org	37	chr18	14542888	14542888	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcataaaggagttgtcAtggtctccagaagtgcccac	10	10	4	1	rs8040506	bycluster	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	14542888	A	G	14542888	2	3	57	1	0	0	0	0	0	0	0	1	12342	214	8	4		4	POTEC	18	14542888	Silent	SNP	A	TCGA-KO-8407-01A-11D-2310-10		14542888	63534360	72	5629											
ASXL3	80816	broad.mit.edu	37	chr18	31325884	31325884	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgccaccgcctcccccTccccctccacccttggcttt	5	26	0	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	31325884	T	C	31325884	2	2	57	1	0	0	0	0	0	0	0	1	1072	1538	54	2		2	ASXL3	18	31325884	Silent	SNP	T	TCGA-KO-8407-01A-11D-2310-10	16782996	31325884	46751364	73	5630											
TMX3	54495	ucsc.edu	37	chr18	66365223	66365223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatacacggtgtctcttctgCatatgttcaaacatttgttg	7	8	3	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	66365223	C	T	66365223	3	4	57	1	0	0	0	0	1	0	0	0	16372	710	25	4	966	4	TMX3	18	66365223	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	35039339	66365223	11712025	74	5631											
WDR18	57418	mdanderson.org	37	chr19	984554	984554	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tacatcagcgcctgggagctCcagcggaaggtgcggcggtg	17	11	1	0	rs4806884	byfrequency	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	984554	C	G	984554	2	3	57	1	0	0	0	0	0	0	0	1	17384	842	30	5		5	WDR18	19	984554	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10		984554	58144429	75	5632											
COL5A3	50509	mdanderson.org;bcgsc.ca	37	chr19	10078060	10078060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggtccagtgtctccaCgggggcccatggacccctgt	13	15	1	0	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	10078060	C	T	10078060	3	4	57	1	0	0	0	0	1	0	0	0	3727	536	19	1	840	1	COL5A3	19	10078060	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10	9093506	10078060	49050923	76	5633											
LILRA1	11024	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr19	55107718	55107718	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtggcctcaggagagaaCgtgaccctgctgtgtcagtc	14	11	2	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	55107718	C	T	55107718	2	4	57	1	0	0	0	0	0	0	0	1	8847	535	19	1		1	LILRA1	19	55107718	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10	45029658	55107718	4021265	77	5634											
SLC32A1	140679	broad.mit.edu	37	chr20	37356927	37356927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtcgaggtgctggagaagtCgctcttccaggaaggcagcc	15	10	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	37356927	C	T	37356927	3	4	57	1	0	0	0	0	1	0	0	0	14663	893	31	1	1229	1	SLC32A1	20	37356927	Missense_Mutation	SNP	C	TCGA-KO-8407-01A-11D-2310-10		37356927	25668593	78	5635											
APP	351	broad.mit.edu	37	chr21	27372385	27372386	+	Frame_Shift_Ins	INS	-	-	C													tgtcaaagttgttccggttgINSccgccacatccgccgtaaaa					rs141526793	bycluster;by1000genomes	TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	27372386	-	C	27372385	7	5	57	1	0	1	1	0	0	0	0	0	817	1306	46	0	1382	0	APP	21	27372385	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10		27372385	20757510	79	5636											
USP16	10600	broad.mit.edu	37	chr21	30409627	30409627	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatggaaatattgaacttgAaaataaaaaattagaaaaag	6	1	0	3	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	30409627	A	G	30409627	3	3	57	1	0	0	0	0	1	0	0	0	17153	246	9	4	497	4	USP16	21	30409627	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	3037242	30409627	17720268	80	5637											
KRTAP10-6	386674	mdanderson.org	37	chr21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatccccacagcagacggAcacacagcacacaggcttgc	9	15	0	2	rs201334923		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	46011987	A	G	46011987	3	3	57	1	0	0	0	0	1	0	0	0	8574	275	10	2	722	2	KRTAP10-6	21	46011987	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	15602360	46011987	2117908	81	5638											
MTMR3	8897	mdanderson.org	37	chr22	30419455	30419455	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccttgcagggacactgaCcgtgttgatcaaacgtggtg	12	11	1	2	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		T	30419455	C	T	30419455	2	4	57	1	0	0	0	0	0	0	0	1	10023	506	18	3		3	MTMR3	22	30419455	Silent	SNP	C	TCGA-KO-8407-01A-11D-2310-10		30419455	20885111	82	5639											
SEC14L3	266629	broad.mit.edu	37	chr22	30857663	30857664	+	Frame_Shift_Ins	INS	-	-	C													acgtacatggacttggggatINSctccccgccatagttaatct					novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	30857664	-	C	30857663	7	5	57	1	0	1	1	0	0	0	0	0	14080	1435	50	0	424	0	SEC14L3	22	30857663	Frame_Shift_Ins	INS	-	TCGA-KO-8407-01A-11D-2310-10	438208	30857663	20446903	83	5640											
RBX1	9978	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr22	41368482	41368482	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttactttgtctttcaggtAtgggcactaggaaaagactt	9	6	2	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	41368482	A	G	41368482	3	3	57	1	0	0	0	0	1	0	0	0	13257	449	16	4	335	4	RBX1	22	41368482	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10	10510819	41368482	9936084	84	5641											
CLCN5	1184	bcgsc.ca	37	chrX	49834549	49834549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagaggacaagtcgtacaAtggtggaggaataggttctt	13	5	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		G	49834549	A	G	49834549	3	3	57	1	0	0	0	0	1	0	0	0	3495	101	4	4	189	4	CLCN5	23	49834549	Missense_Mutation	SNP	A	TCGA-KO-8407-01A-11D-2310-10		49834549	105436011	85	5642											
NHSL2	340527	broad.mit.edu	37	chrX	71360546	71360546	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtgtcccgccaccggcGatgacctgcaatcacttggt	10	15	1	1	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		A	71360546	G	A	71360546	3	1	57	1	0	0	0	0	1	0	0	0	10491	1058	37	1	3170	1	NHSL2	23	71360546	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	21525997	71360546	83910014	86	5643											
TMEM31	203562	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	102967204	102967204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaatgaggttaacagaaaaGagtgagggagaacaacaact	12	4	0	5	novel		TCGA-KO-8407-01A-11D-2310-10	TCGA-KO-8407-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	64f696a6-58b2-40a8-b848-fd775cd52529	60f94151-bbc5-4bea-a081-b0247bdbabb3		C	102967204	G	C	102967204	3	2	57	1	0	0	0	0	1	0	0	0	16259	933	33	5	20	5	TMEM31	23	102967204	Missense_Mutation	SNP	G	TCGA-KO-8407-01A-11D-2310-10	31606658	102967204	52303356	87	5644											
SKI	6497	bcgsc.ca	37	chr1	2235304	2235304	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcctacaagagctttgagAcagccgtggcgcccaacgtg	11	13	0	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	2235304	A	G	2235304	3	3	58	1	0	0	0	0	1	0	0	0	14455	275	10	2	1251	2	SKI	1	2235304	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10		2235304	247015317	1	5645											
PRDM16	63976	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	3328864	3328864	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gccatcgcatccattgccgaGaagtactttggccccggctt	10	14	0	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	3328864	G	C	3328864	3	2	58	1	0	0	0	0	1	0	0	0	12546	933	33	5	2137	5	PRDM16	1	3328864	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1093560	3328864	245921757	2	5646											
UBXN11	91544	mdanderson.org	37	chr1	26608852	26608852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaccgggaccgggactggGgccgggaccgggaccgggac	22	12	0	0	rs61775089		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	26608852	G	A	26608852	3	1	58	1	0	0	0	0	1	0	0	0	17019	1232	43	3	65	3	UBXN11	1	26608852	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23279988	26608852	222641769	3	5647											
PLEKHA6	22874	broad.mit.edu	37	chr1	204226633	204226633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagccctggctgggtgagcGgggcacagagtgggagcggg	23	8	0	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	204226633	G	A	204226633	3	1	58	1	0	0	0	0	1	0	0	0	12140	1116	39	1	1830	1	PLEKHA6	1	204226633	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	177617781	204226633	45023988	4	5648											
PROX1	5629	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr1	214171243	214171243	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccagtctgcctccggcccTgccgctggcggccaccacca	11	20	1	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	214171243	T	A	214171243	2	1	58	1	0	0	0	0	0	0	0	1	12649	1567	55	5		5	PROX1	1	214171243	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	9944610	214171243	35079378	5	5649											
SH2D6	284948	broad.mit.edu	37	chr2	85662144	85662144	+	Frame_Shift_Del	DEL	A	A	-													agccacctttgcccacccccAccccaccccaccccacccca					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	85662144	A	-	85662144	7	5	58	1	0	1	0	1	0	0	0	0	14335	146	6	0	68	0	SH2D6	2	85662144	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10		85662144	157537229	6	5650											
RGPD2	729857	broad.mit.edu	37	chr2	88125234	88125234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtaccgctccccgtaggcTttgctgcgcctcatcgcacc	10	17	1	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	88125234	T	C	88125234	2	2	58	1	0	0	0	0	0	0	0	1	13378	1606	56	2		2	RGPD2	2	88125234	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	2463090	88125234	155074139	7	5651											
TEKT4	150483	mdanderson.org	37	chr2	95537622	95537622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgactgcaggacacgcacAgctggaagtcggagctgcag	15	11	0	0	rs11164112	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	95537622	A	G	95537622	3	3	58	1	0	0	0	0	1	0	0	0	15859	188	7	2	300	2	TEKT4	2	95537622	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	7412388	95537622	147661751	8	5652											
ZAK	0	broad.mit.edu	37	chr2	174074493	174074493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaaatcatttcaatcctgGagtccatgtcaaatgacacg	7	10	3	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	174074493	G	A	174074493	3	1	58	1	0	0	0	0	1	0	0	0	17618	1175	41	3	815	3	ZAK	2	174074493	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	78536871	174074493	69124880	9	5653											
ALS2CL	259173	broad.mit.edu	37	chr3	46728540	46728541	+	Frame_Shift_Ins	INS	-	-	G													cacgtgatgggcgagtggctINSggtggagggcctggcccagc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	46728541	-	G	46728540	7	5	58	1	0	1	1	0	0	0	0	0	551	1580	55	0	2482	0	ALS2CL	3	46728540	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10		46728540	151293890	10	5654											
CELSR3	1951	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	48694702	48694702	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatgttctcaaggcgcacGgtcaggctgttggccagcaa	12	12	2	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	48694702	G	A	48694702	2	1	58	1	0	0	0	0	0	0	0	1	3252	1103	39	1		1	CELSR3	3	48694702	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1966162	48694702	149327728	11	5655											
WDR6	11180	broad.mit.edu	37	chr3	49049218	49049218	+	Frame_Shift_Del	DEL	T	T	-													ccttgacttggaggccatggTggctgtgtttggaagcaagg					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	49049218	T	-	49049218	7	5	58	1	0	1	0	1	0	0	0	0	17416	1696	59	0	347	0	WDR6	3	49049218	Frame_Shift_Del	DEL	T	TCGA-KO-8408-01A-11D-2310-10	354516	49049218	148973212	12	5656											
CBLB	868	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	105464866	105464866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaagaaattccaattccgcAaaatagagccccaaggctaa	6	11	0	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	105464866	A	C	105464866	3	2	58	1	0	0	0	0	1	0	0	0	2726	131	5	5	2264	5	CBLB	3	105464866	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	56415648	105464866	92557564	13	5657											
KIAA2018	205717	broad.mit.edu	37	chr3	113378994	113378995	+	Frame_Shift_Ins	INS	-	-	G													ctgagatttaacttgtggctINSgggcaattagtggctgcata					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	113378995	-	G	113378994	7	5	58	1	0	1	1	0	0	0	0	0	8329	1580	55	0	5206	0	KIAA2018	3	113378994	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	7914128	113378994	84643436	14	5658											
SEC22A	26984	broad.mit.edu	37	chr3	122990419	122990419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cggaatgtcaaatcttttttGacttttggcttaatctgtct	7	7	4	1	rs190644797	bycluster	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	122990419	G	T	122990419	3	4	58	1	0	0	0	0	1	0	0	0	14085	1281	45	5	796	5	SEC22A	3	122990419	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	9611425	122990419	75032011	15	5659											
C3orf58	205428	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	143704589	143704589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcactctacctcctggacGtcagctttgacaattttgca	7	12	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	143704589	G	T	143704589	3	4	58	1	0	0	0	0	1	0	0	0	2256	1145	40	5	902	5	C3orf58	3	143704589	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	20714170	143704589	54317841	16	5660											
GFM1	85476	broad.mit.edu	37	chr3	158362472	158362473	+	Frame_Shift_Ins	INS	-	-	C													ggctctggggcgcggaagggINScccccgcctccctaggctgg					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	158362473	-	C	158362472	7	5	58	1	0	1	1	0	0	0	0	0	6397	1203	42	0	51	0	GFM1	3	158362472	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	14657883	158362472	39659958	17	5661											
MUC4	4585	mdanderson.org	37	chr3	195509045	195509045	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgctggtgacaggaagagCggtggcctgacctgtggatg	18	7	0	3	rs75309583		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	195509045	C	G	195509045	3	3	58	1	0	0	0	0	1	0	0	0	10056	768	27	5		5	MUC4	3	195509045	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	37146573	195509045	2513385	18	5662			1	59		3	3	1665	N	G_C	2.978458e-05
MUC4	4585	mdanderson.org	37	chr3	195509218	195509218	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgtggatgctgaggaaGtgtcggtgacaggaagcggg	19	6	0	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	195509218	G	T	195509218	3	4	58	1	0	0	0	0	1	0	0	0	10056	1029	36	5		5	MUC4	3	195509218	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	173	195509218	2513212	19	5663			1	59		3	3	1665	N	G_C	2.978458e-05
MUC4	4585	mdanderson.org	37	chr3	195510709	195510709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggatgctgaggaagtgCtggtgacaggaagaggggtg	20	4	0	3	rs74504395	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	195510709	C	T	195510709	3	4	58	1	0	0	0	0	1	0	0	0	10056	797	28	4		4	MUC4	3	195510709	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1491	195510709	2511721	20	5664			1	59		3	3	1665	N	G_C	2.978458e-05
CRIPAK	285464	mdanderson.org	37	chr4	1389148	1389148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggggtgcccgcctgctcacaTgtgccgatgtggagtgcccg	16	13	1	0	rs79888804	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	1389148	T	C	1389148	2	2	58	1	0	0	0	0	0	0	0	1	3906	1461	51	4		4	CRIPAK	4	1389148	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10		1389148	189765128	21	5665											
FBXL5	26234	broad.mit.edu	37	chr4	15627587	15627587	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgaagactctggcagcaacCaagccaagaccaactataat	7	13	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	15627587	C	A	15627587	3	1	58	1	0	0	0	0	1	0	0	0	5771	594	21	5	949	5	FBXL5	4	15627587	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	14238439	15627587	175526689	22	5666											
FRAS1	80144	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	79301068	79301068	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caagaaatggaaaagaggttCagctggacaaggctggccgt	14	7	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	79301068	C	T	79301068	4	4	58	1	0	0	0	0	0	1	0	0	6093	827	29	4	3587	4	FRAS1	4	79301068	Nonsense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	63673481	79301068	111853208	23	5667											
AGPAT9	84803	broad.mit.edu;mdanderson.org	37	chr4	84465716	84465716	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caatacgaattgaaaaaggaAccccaaaggagtcgattctt	8	8	1	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	84465716	A	G	84465716	3	3	58	1	0	0	0	0	1	0	0	0	392	43	2	2	175	2	AGPAT9	4	84465716	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	5164648	84465716	106688560	24	5668											
DSPP	1834	mdanderson.org	37	chr4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgatagcagtgacagcagcGatagcagtgacagcagtgac	14	9	0	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	88536953	G	A	88536953	3	1	58	1	0	0	0	0	1	0	0	0	4819	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	4071237	88536953	102617323	25	5669											
QRFPR	84109	bcgsc.ca	37	chr4	122250742	122250742	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caaactgcagacaaaacattTtttttgaagttttcattcat	4	7	2	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	122250742	T	A	122250742	3	1	58	1	0	0	0	0	1	0	0	0	12970	1838	64	5	276	5	QRFPR	4	122250742	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	33713789	122250742	68903534	26	5670											
FRG1	2483	mdanderson.org	37	chr4	190876210	190876210	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaatcgccctgaagtctggCtatggaaaatatcttggtat	10	7	2	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	190876210	C	G	190876210	2	3	58	1	0	0	0	0	0	0	0	1	6098	784	28	5		5	FRG1	4	190876210	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	68625468	190876210	278066	27	5671											
RAD17	5884	broad.mit.edu	37	chr5	68695895	68695895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatcgggaaaattgcctggCagcaaaagcactttttcctg	10	9	0	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	68695895	C	T	68695895	3	4	58	1	0	0	0	0	1	0	0	0	13071	710	25	4	1692	4	RAD17	5	68695895	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10		68695895	112219365	28	5672											
SPZ1	84654	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	79616249	79616249	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcacagaagtttaacaatcTcttaaaagaaattaaagata	5	5	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	79616249	T	G	79616249	3	3	58	1	0	0	0	0	1	0	0	0	15227	1551	54	5	217	5	SPZ1	5	79616249	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	10920354	79616249	101299011	29	5673											
C5orf20	140947	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	134782502	134782502	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcctcgcagatgcttcactCgaaagattggagttgcagag	13	9	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	134782502	C	T	134782502	2	4	58	1	0	0	0	0	0	0	0	1	2305	871	31	1		1	C5orf20	5	134782502	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	55166253	134782502	46132758	30	5674											
PCDHB16	57717	mdanderson.org	37	chr5	140563708	140563708	+	Missense_Mutation	SNP	G	G	A													gctggactacgaggccctgcGggagttcgagttccgcgtga					rs17844651	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	140563708	G	A	140563708	3	1	58	1	0	0	0	0	1	0	0	0	11620	1116	39	1	1576	1	PCDHB16	5	140563708	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	5781206	140563708	40351552	31	5675	144	2	2	60		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB16	57717	mdanderson.org	37	chr5	140563711	140563712	+	Missense_Mutation	DNP	AG	AG	CT													ggactacgaggccctgcgggAgttcgagttccgcgtgagcg					rs17844653	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		CT	140563712	AG	CT	140563711	3	2	58	1	0	0	0	0	1	0	0	0	11620	304	11	5	1579	5	PCDHB16	5	140563711	Missense_Mutation	DNP	AG	TCGA-KO-8408-01A-11D-2310-10	3	140563711	40351549	32	5676	144	2	2	60		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB16	57717	mdanderson.org	37	chr5	140563754	140563754	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaccgcggctccccggcTttgagcagcgaggcgctggt	15	14	0	2	rs17844656	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	140563754	T	G	140563754	2	3	58	1	0	0	0	0	0	0	0	1	11620	1596	56	5		5	PCDHB16	5	140563754	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	43	140563754	40351506	33	5677			2	60		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB10	56126	mdanderson.org	37	chr5	140573719	140573719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggctttcgagttccgcgtgGgcgccacagaccgcggctcc	14	15	0	1	rs148484995	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	140573719	G	A	140573719	3	1	58	1	0	0	0	0	1	0	0	0	11614	1232	43	3	1596	3	PCDHB10	5	140573719	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	9965	140573719	40341541	34	5678			2	60		5	4	10047	N	T_G_AG_A	1.6418e-05
PCDHB10	56126	mdanderson.org	37	chr5	140573754	140573754	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcccccgcgctgagcagAgaggcgctggtgcgcgtgct	17	14	0	2	rs77697313		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	140573754	A	C	140573754	3	2	58	1	0	0	0	0	1	0	0	0	11614	301	11	5	1631	5	PCDHB10	5	140573754	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	35	140573754	40341506	35	5679			2	60		5	4	10047	N	T_G_AG_A	1.6418e-05
ARSI	340075	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	149677902	149677902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggccacattctcaccCtcgtgcaggtcgaagccgca	9	18	1	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	149677902	C	A	149677902	3	1	58	1	0	0	0	0	1	0	0	0	998	680	24	5	1128	5	ARSI	5	149677902	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	9104148	149677902	31237358	36	5680											
HLA-A	3105	mdanderson.org	37	chr6	29911240	29911240	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcccatgaggcggagcagtTgagagcctacctggatggca	16	10	0	2	rs9260156	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	29911240	T	A	29911240	4	1	58	1	0	0	0	0	0	1	0	0	7253	1821	63	5	549	5	HLA-A	6	29911240	Nonsense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10		29911240	141203827	37	5681											
HLA-B	3106	mdanderson.org	37	chr6	31324208	31324208	+	Missense_Mutation	SNP	G	G	T													gcagccgtacatgctctggaGggtgtgagaccctggccccg					rs12721829	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	31324208	G	T	31324208	3	4	58	1	0	0	0	0	1	0	0	0	7254	1000	35	5	753	5	HLA-B	6	31324208	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1412968	31324208	139790859	38	5682	145	2									
HLA-B	3106	mdanderson.org	37	chr6	31324210	31324210	+	Missense_Mutation	SNP	G	G	A													agccgtacatgctctggaggGtgtgagaccctggccccggc					rs12721827	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	31324210	G	A	31324210	3	1	58	1	0	0	0	0	1	0	0	0	7254	1261	44	3	755	3	HLA-B	6	31324210	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	2	31324210	139790857	39	5683	145	2									
HLA-B	3106	broad.mit.edu	37	chr6	31324488	31324489	+	Frame_Shift_Ins	INS	-	-	GG													ctcgctctggttgtagtagcINScgcgcaggttccgcaggctc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		GG	31324489	-	GG	31324488	7	5	58	1	0	1	1	0	0	0	0	0	7254	739	26	0	792	0	HLA-B	6	31324488	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	278	31324488	139790579	40	5684											
SYNE1	23345	ucsc.edu	37	chr6	152577848	152577848	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttatcttgggttggcacgTcccctttgtacagtggcaca	10	10	1	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	152577848	T	C	152577848	3	2	58	1	0	0	0	0	1	0	0	0	15546	1667	58	2	7621	2	SYNE1	6	152577848	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	121253360	152577848	18537219	41	5685											
C7orf50	84310	ucsc.edu	37	chr7	1167008	1167008	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacttcaggaacttttctcTtctgttttgccatcctgcaa	5	12	4	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	1167008	T	C	1167008	3	2	58	1	0	0	0	0	1	0	0	0	2422	1609	56	2	586	2	C7orf50	7	1167008	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10		1167008	157971655	42	5686											
RADIL	55698	mdanderson.org	37	chr7	4841470	4841470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctgggagcccccacggcTgggttgccttccaggggggg	18	13	0	0	rs414035		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	4841470	T	C	4841470	3	2	58	1	0	0	0	0	1	0	0	0	13089	1580	55	2	587	2	RADIL	7	4841470	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	3674462	4841470	154297193	43	5687											
TNRC18	84629	mdanderson.org	37	chr7	5353337	5353337	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgggtggtgcgggactgggCtgcggcggtgccgggcgcgc	24	11	0	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	5353337	C	A	5353337	3	1	58	1	0	0	0	0	1	0	0	0	16443	796	28	5	1737	5	TNRC18	7	5353337	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	511867	5353337	153785326	44	5688											
HIP1	3092	broad.mit.edu	37	chr7	75187548	75187549	+	Frame_Shift_Ins	INS	-	-	T													ctatatcgctgttcattggcINSttgagctttccctgtattgt					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	75187549	-	T	75187548	7	5	58	1	0	1	1	0	0	0	0	0	7172	797	28	0	1794	0	HIP1	7	75187548	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	69834211	75187548	83951115	45	5689											
MDH2	4191	mdanderson.org	37	chr7	75677504	75677504	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgccctcgcccggcctgCcagcgctgctctccgccgca	10	23	1	0	rs6720	bycluster;byfrequency;by1000genomes	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	75677504	C	T	75677504	3	4	58	1	0	0	0	0	1	0	0	0	9487	739	26	3	28	3	MDH2	7	75677504	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	489956	75677504	83461159	46	5690											
DTX2	113878	mdanderson.org	37	chr7	76112348	76112348	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcccaggctgaacaccacCaacgcctggggcgcagctcc	12	18	0	1	rs2539636		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	76112348	C	G	76112348	2	3	58	1	0	0	0	0	0	0	0	1	4831	581	21	5		5	DTX2	7	76112348	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	434844	76112348	83026315	47	5691											
PCOLCE	5118	broad.mit.edu;hgsc.bcm.edu	37	chr7	100204166	100204166	+	Frame_Shift_Del	DEL	G	G	-													ccaaagaagggcaagggcccGgccccaaacggggaactgag					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	100204166	G	-	100204166	7	5	58	1	0	1	0	1	0	0	0	0	11673	1116	39	0	875	0	PCOLCE	7	100204166	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	24091818	100204166	58934497	48	5692	146	3									
PCOLCE	5118	bcgsc.ca	37	chr7	100204167	100204167	+	Frame_Shift_Del	DEL	G	G	-													caaagaagggcaagggcccgGccccaaacggggaactgagc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	100204167	G	-	100204167	7	5	58	1	0	1	0	1	0	0	0	0	11673	1203	42	0	876	0	PCOLCE	7	100204167	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	1	100204167	58934496	49	5693	146	3									
PCOLCE	5118	hgsc.bcm.edu	37	chr7	100204168	100204168	+	Silent	SNP	C	C	A													aaagaagggcaagggcccggCcccaaacggggaactgagcc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	100204168	C	A	100204168	2	1	58	1	0	0	0	0	0	0	0	1	11673	726	26	5		5	PCOLCE	7	100204168	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1	100204168	58934495	50	5694	146	3									
ZAN	7455	bcgsc.ca	37	chr7	100334192	100334192	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagacgatgaagactgggttCgagccagtgggccctctccc	13	13	1	3	rs200760090		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	100334192	C	T	100334192	4	4	58	1	0	0	0	0	0	1	0	0	17619	876	31	1	203	1	ZAN	7	100334192	Nonsense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	130024	100334192	58804471	51	5695											
ZAN	7455	broad.mit.edu	37	chr7	100349927	100349927	+	Frame_Shift_Del	DEL	C	C	-													cccacagaaaaatccaccatCtccccagaaaaacccaccac					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	100349927	C	-	100349927	7	5	58	1	0	1	0	1	0	0	0	0	17619	903	32	0	2249	0	ZAN	7	100349927	Frame_Shift_Del	DEL	C	TCGA-KO-8408-01A-11D-2310-10	15735	100349927	58788736	52	5696	147	2									
ZAN	7455	broad.mit.edu	37	chr7	100349931	100349932	+	Frame_Shift_Ins	INS	-	-	T													agaaaaatccaccatctcccINScagaaaaacccaccaccccc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	100349932	-	T	100349931	7	5	58	1	0	1	1	0	0	0	0	0	17619	623	22	0	2253	0	ZAN	7	100349931	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	4	100349931	58788732	53	5697	147	2									
PLXNA4	91584	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	131913154	131913154	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgggatggaccgtcagcCggacacactgcttcatctcc	11	13	3	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	131913154	C	T	131913154	3	4	58	1	0	0	0	0	1	0	0	0	12202	652	23	1	4113	1	PLXNA4	7	131913154	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	31563223	131913154	27225509	54	5698											
SLC35B4	84912	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr7	133986798	133986798	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taccacctgctttgctgacaTaaaagtgcaaataaatatcc	5	10	0	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	133986798	T	A	133986798	3	1	58	1	0	0	0	0	1	0	0	0	14676	1406	49	5	610	5	SLC35B4	7	133986798	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	2073644	133986798	25151865	55	5699											
PDIA4	9601	mdanderson.org	37	chr7	148725417	148725417	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgcttgccgctcaccctcGtccgggccctcggcacccgc	11	22	1	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	148725417	G	T	148725417	3	4	58	1	0	0	0	0	1	0	0	0	11749	1136	40	5	1893	5	PDIA4	7	148725417	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	14738619	148725417	10413246	56	5700											
KRBA1	84626	broad.mit.edu	37	chr7	149430350	149430351	+	Frame_Shift_Ins	INS	-	-	C													ctgagctgcccagtgagtctINSccccctccggagctgccccc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	149430351	-	C	149430350	7	5	58	1	0	1	1	0	0	0	0	0	8500	1538	54	0	2368	0	KRBA1	7	149430350	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	704933	149430350	9708313	57	5701											
ACTR3B	57180	mdanderson.org	37	chr7	152522195	152522195	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccccatcgatgtgcggcgCccgctgtataaggtatgagc	13	12	0	1	rs200914813	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	152522195	C	T	152522195	2	4	58	1	0	0	0	0	0	0	0	1	213	726	26	3		3	ACTR3B	7	152522195	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	3091845	152522195	6616468	58	5702											
HR	55806	broad.mit.edu	37	chr8	21980059	21980060	+	Frame_Shift_Ins	INS	-	-	G													gcatcagcttggcaggggcaINSgtgcccccggatatcaaact					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	21980060	-	G	21980059	7	5	58	1	0	1	1	0	0	0	0	0	7405	188	7	0	1549	0	HR	8	21980059	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10		21980059	124383963	59	5703											
BMP1	649	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	22052331	22052331	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggcgctactgtggctatgAgaagcctgatgacatcaaga	13	9	1	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	22052331	A	G	22052331	3	3	58	1	0	0	0	0	1	0	0	0	1461	304	11	2	1584	2	BMP1	8	22052331	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	72272	22052331	124311691	60	5704											
FAM150A	389658	mdanderson.org	37	chr8	53477780	53477780	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccagcgccagcaggaagaGtgcgggcaaaggggcgccgg	19	11	0	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	53477780	G	C	53477780	3	2	58	1	0	0	0	0	1	0	0	0	5499	1029	36	5	368	5	FAM150A	8	53477780	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	31425449	53477780	92886242	61	5705											
RIPK2	8767	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr8	90802425	90802425	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccttctgtccagggacttGatcatgaaagaggactatga	11	9	2	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	90802425	G	A	90802425	2	1	58	1	0	0	0	0	0	0	0	1	13476	1281	45	4		4	RIPK2	8	90802425	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	37324645	90802425	55561597	62	5706											
COL14A1	7373	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	121238908	121238908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttagaaattgatgaggtgaCgacagacagttttagggtga	13	4	0	6	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	121238908	C	T	121238908	3	4	58	1	0	0	0	0	1	0	0	0	3700	536	19	1	1965	1	COL14A1	8	121238908	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	30436483	121238908	25125114	63	5707											
EPPK1	83481	mdanderson.org	37	chr8	144940378	144940378	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggctgtgcacggggtcgatGacgccgcccgtggcgatctg	17	12	1	1	rs62641757		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	144940378	G	A	144940378	2	1	58	1	0	0	0	0	0	0	0	1	5229	1277	45	4		4	EPPK1	8	144940378	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23701470	144940378	1423644	64	5708											
OPLAH	26873	broad.mit.edu	37	chr8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcctggcgcccgcaggGcctccgtcaccgctggatgg	14	17	1	0	rs186909122	by1000genomes;alternate_allele	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	145108284	G	T	145108284	3	4	58	1	0	0	0	0	1	0	0	0	10955	1203	42	5	1201	5	OPLAH	8	145108284	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	167906	145108284	1255738	65	5709											
OPLAH	26873	mdanderson.org	37	chr8	145113241	145113241	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggcccgagagcacagcacTggagccgctgaaggtgtcca	15	13	0	2	rs3935209	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	145113241	T	G	145113241	3	3	58	1	0	0	0	0	1	0	0	0	10955	1580	55	5	3102	5	OPLAH	8	145113241	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	4957	145113241	1250781	66	5710											
PRSS3	5646	mdanderson.org	37	chr9	33796660	33796660	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgctgtcccctttgacgaTgatgacaagattgttggggg	14	7	0	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	33796660	T	C	33796660	2	2	58	1	0	0	0	0	0	0	0	1	12711	1461	51	4		4	PRSS3	9	33796660	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10		33796660	107416771	67	5711											
IL11RA	3590	broad.mit.edu	37	chr9	34658538	34658538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccctgacccaccccaggGcctgcgggtagagtcagtac	13	16	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	34658538	G	T	34658538	3	4	58	1	0	0	0	0	1	0	0	0	7684	1203	42	5	694	5	IL11RA	9	34658538	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	861878	34658538	106554893	68	5712											
DCAF10	79269	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr9	37861212	37861212	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gctgttctctacgactgactCattacattgaagaagccaat	7	10	2	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	37861212	C	G	37861212	3	3	58	1	0	0	0	0	1	0	0	0	4293	826	29	5	1413	5	DCAF10	9	37861212	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	3202674	37861212	103352219	69	5713											
TUBB8	347688	mdanderson.org	37	chr10	94005	94005	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actgactccatcagctccgcGccttcggtgtagtgtccctt	9	15	1	1	rs71482274	alternate_allele	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	94005	G	A	94005	2	1	58	1	0	0	0	0	0	0	0	1	16867	1074	38	1		1	TUBB8	10	94005	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10		94005	135440742	70	5714			3	61		2	2	14	N	T_G	6.046973e-05
TUBB8	347688	mdanderson.org	37	chr10	94018	94018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccgcgccttcggtgtagTgtcccttggcccagttgttt	12	13	0	0	rs9329307	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	94018	T	C	94018	3	2	58	1	0	0	0	0	1	0	0	0	16867	1696	59	2	1024	2	TUBB8	10	94018	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	13	94018	135440729	71	5715			3	61		2	2	14	N	T_G	6.046973e-05
GPRIN2	9721	mdanderson.org	37	chr10	47000239	47000239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagctgctgcggctgctcCggcgcggcccccgagtgagg	16	17	0	1	rs7912299	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	47000239	C	T	47000239	2	4	58	1	0	0	0	0	0	0	0	1	6788	639	23	1		1	GPRIN2	10	47000239	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	46906221	47000239	88534508	72	5716											
ARID5B	84159	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr10	63700094	63700094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatggacagaaggaagctctGctgaagtacaggcagtcaac	12	8	2	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	63700094	G	A	63700094	2	1	58	1	0	0	0	0	0	0	0	1	924	1306	46	4		4	ARID5B	10	63700094	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	16699855	63700094	71834653	73	5717											
PTEN	5728	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr10	89693003	89693003	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaagtaaggaccagagacAaaaaggtaagttattttttg	12	3	0	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	89693003	A	T	89693003	4	4	58	1	0	0	0	0	0	1	0	0	12827	131	5	5	505	5	PTEN	10	89693003	Nonsense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	25992909	89693003	45841744	74	5718											
C10orf12	26148	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	98743653	98743653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacaaatcagataaactgAaagagatttggaaaagcaag	10	4	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	98743653	A	G	98743653	3	3	58	1	0	0	0	0	1	0	0	0	1599	247	9	4	2508	4	C10orf12	10	98743653	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	9050650	98743653	36791094	75	5719											
AP2A2	161	broad.mit.edu	37	chr11	970195	970195	+	Frame_Shift_Del	DEL	A	A	-													aggctcttgatggctatagtAaaaaaaagtacgtctgcaag					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	970195	A	-	970195	7	5	58	1	0	1	0	1	0	0	0	0	742	363	13	0	173	0	AP2A2	11	970195	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10		970195	134036321	76	5720											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092954	1092954	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccatcaccaccaccactacGgtgaccccaaccccaacacc	3	23	1	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	1092954	G	A	1092954	2	1	58	1	0	0	0	0	0	0	0	1	10053	1103	39	1		1	MUC2	11	1092954	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	122759	1092954	133913562	77	5721											
NUP98	4928	broad.mit.edu	37	chr11	3793077	3793078	+	Frame_Shift_Ins	INS	-	-	A													gaagtggctggagaagacccINSaaacaagccagttgtggtac					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	3793078	-	A	3793077	7	5	58	1	0	1	1	0	0	0	0	0	10852	594	21	0	4897	0	NUP98	11	3793077	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	2700123	3793077	131213439	78	5722											
SMPD1	6609	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	6415260	6415260	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcaactacctacatcgGccttaatcctggtgagtgag	10	11	0	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	6415260	G	C	6415260	3	2	58	1	0	0	0	0	1	0	0	0	14902	1203	42	5	1533	5	SMPD1	11	6415260	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	2622183	6415260	128591256	79	5723											
INSC	387755	broad.mit.edu	37	chr11	15267583	15267583	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacatggaggagagttttgtGtagtgagtgtgggcgaagaa	17	2	0	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	15267583	G	T	15267583	2	4	58	1	0	0	0	0	0	0	0	1	7825	1364	48	5		5	INSC	11	15267583	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	8852323	15267583	119738933	80	5724											
CD5	921	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	60886402	60886402	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagaaccccagaagacaaCacctccaacgacaaggcccc	7	17	0	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	60886402	C	G	60886402	3	3	58	1	0	0	0	0	1	0	0	0	3050	478	17	5	430	5	CD5	11	60886402	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	45618819	60886402	74120114	81	5725											
YAP1	10413	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	102098274	102098274	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctacagtgtccctcgaacccCagatgacttcctgaacagtg	8	14	0	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	102098274	C	A	102098274	3	1	58	1	0	0	0	0	1	0	0	0	17572	594	21	5	1280	5	YAP1	11	102098274	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	41211872	102098274	32908242	82	5726											
DDI1	414301	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	103908145	103908145	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagagagcaagagaggcttCgtctctacacagccgaccca	11	12	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	103908145	C	T	103908145	3	4	58	1	0	0	0	0	1	0	0	0	4360	884	31	1	597	1	DDI1	11	103908145	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1809871	103908145	31098371	83	5727											
SLC35F2	54733	broad.mit.edu	37	chr11	107676203	107676204	+	Frame_Shift_Ins	INS	-	-	A													atggcatagagggaagccccINSaagaaggaccaagatgtcac					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	107676204	-	A	107676203	7	5	58	1	0	1	1	0	0	0	0	0	14687	594	21	0	527	0	SLC35F2	11	107676203	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	3768058	107676203	27330313	84	5728											
EXPH5	23086	broad.mit.edu	37	chr11	108381019	108381020	+	Frame_Shift_Ins	INS	-	-	G													aattctgcttccctgaggctINSggtgaatgtgatgggtgatg					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	108381020	-	G	108381019	7	5	58	1	0	1	1	0	0	0	0	0	5362	1580	55	0	758	0	EXPH5	11	108381019	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	704816	108381019	26625497	85	5729											
POU2F3	25833	broad.mit.edu	37	chr11	120173026	120173026	+	Frame_Shift_Del	DEL	G	G	-													aatctcctcccctttccacaGcaacaaagcggtctcctcct					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	120173026	G	-	120173026	7	5	58	1	0	1	0	1	0	0	0	0	12353	962	34	0	415	0	POU2F3	11	120173026	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	11792007	120173026	14833490	86	5730											
ST14	6768	broad.mit.edu	37	chr11	130079400	130079401	+	Frame_Shift_Ins	INS	-	-	C													aaccagaccacctgcgagaaINScctcctgccgcagcagatca					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	130079401	-	C	130079400	7	5	58	1	0	1	1	0	0	0	0	0	15311	43	2	0	2403	0	ST14	11	130079400	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	9906374	130079400	4927116	87	5731											
E2F7	144455	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	77419483	77419483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtctgcagaagggagtgtgGacgactttggattaaccaca	14	7	1	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	77419483	G	A	77419483	3	1	58	1	0	0	0	0	1	0	0	0	4909	1174	41	3	323	3	E2F7	12	77419483	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10		77419483	56432412	88	5732											
MYBPC1	4604	mdanderson.org;bcgsc.ca	37	chr12	102043096	102043096	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caagataccgaattagagttGagggtaaaaaacacatcttg	9	6	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	102043096	G	T	102043096	4	4	58	1	0	0	0	0	0	1	0	0	10089	1291	45	5	1313	5	MYBPC1	12	102043096	Nonsense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	24623613	102043096	31808799	89	5733											
C1QTNF9B	387911	mdanderson.org	37	chr13	24465623	24465623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcagtatttttactccGtttttgaccaaagacacctg	8	9	0	2	rs4083570		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	24465623	G	A	24465623	2	1	58	1	0	0	0	0	0	0	0	1	1990	1136	40	1		1	C1QTNF9B	13	24465623	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10		24465623	90704255	90	5734											
FREM2	341640	broad.mit.edu	37	chr13	39266098	39266098	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagccagtggtcaccatccaCaagctggttgtcagtgaaag	11	10	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	39266098	C	T	39266098	2	4	58	1	0	0	0	0	0	0	0	1	6097	477	17	4		4	FREM2	13	39266098	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	14800475	39266098	75903780	91	5735											
SALL2	6297	broad.mit.edu;mdanderson.org	37	chr14	21992203	21992203	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcttggtagtgaagtcacCaacttacttagttgcatgcg	10	9	1	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	21992203	C	T	21992203	2	4	58	1	0	0	0	0	0	0	0	1	13906	593	21	4		4	SALL2	14	21992203	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10		21992203	85357337	92	5736											
FAM179B	23116	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	45513838	45513838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttgaatttttttttagGtgaaaaatttacgttctgga	7	3	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	45513838	G	T	45513838	3	4	58	1	0	0	0	0	1	0	0	0	5549	1275	44	5	3969	5	FAM179B	14	45513838	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23521635	45513838	61835702	93	5737											
C14orf166	51637	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	52458098	52458098	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatcaggcactacaagaTtgaagacagagggaatttaa	10	5	1	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	52458098	T	C	52458098	3	2	58	1	0	0	0	0	1	0	0	0	1768	1493	52	4	131	4	C14orf166	14	52458098	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	6944260	52458098	54891442	94	5738											
ADAM21	8747	mdanderson.org	37	chr14	70924566	70924566	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatcatggttacgtggaggCagcccctgagtctctggttg	13	10	2	1	rs3829452	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	70924566	C	G	70924566	3	3	58	1	0	0	0	0	1	0	0	0	243	710	25	5	352	5	ADAM21	14	70924566	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	18466468	70924566	36424974	95	5739											
TTC7B	145567	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr14	91044471	91044471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcgctgcatgctcttcacGtgggtggggctgatggctaa	15	9	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	91044471	G	A	91044471	2	1	58	1	0	0	0	0	0	0	0	1	16819	1136	40	1		1	TTC7B	14	91044471	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	20119905	91044471	16305069	96	5740											
GOLGA8A	23015	broad.mit.edu	37	chr15	34678927	34678927	+	Frame_Shift_Del	DEL	A	A	-													ctgacgcgcatgcagagaggAggaggcggaggaggacttgg					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	34678927	A	-	34678927	7	5	58	1	0	1	0	1	0	0	0	0	6619	304	11	0	1683	0	GOLGA8A	15	34678927	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10		34678927	67852465	97	5741											
FSIP1	161835	broad.mit.edu	37	chr15	40056059	40056059	+	Frame_Shift_Del	DEL	T	T	-													acagcagtcaaagataaaaaTttttttgtattttccatctc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	40056059	T	-	40056059	7	5	58	1	0	1	0	1	0	0	0	0	6126	1490	52	0	1255	0	FSIP1	15	40056059	Frame_Shift_Del	DEL	T	TCGA-KO-8408-01A-11D-2310-10	5377132	40056059	62475333	98	5742											
EXD1	161829	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr15	41501706	41501706	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaatctttcacctgcagcCagcacagtttgccatggcga	8	12	2	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	41501706	C	T	41501706	4	4	58	1	0	0	0	0	0	1	0	0	5336	595	21	4	1215	4	EXD1	15	41501706	Nonsense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	1445647	41501706	61029686	99	5743											
MAP1A	4130	broad.mit.edu	37	chr15	43821988	43821989	+	Frame_Shift_Ins	INS	-	-	C													ctatgtggtcagtgggaatgINSaccctgccaatggcgagcca					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	43821989	-	C	43821988	7	5	58	1	0	1	1	0	0	0	0	0	9304	1290	45	0	8182	0	MAP1A	15	43821988	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	2320282	43821988	58709404	100	5744											
SNX1	6642	broad.mit.edu	37	chr15	64422451	64422451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggagaagctccaggagGtagagtgtgaggagcagcgc	18	6	0	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	64422451	G	T	64422451	3	4	58	1	0	0	0	0	1	0	0	0	14978	1261	44	5	984	5	SNX1	15	64422451	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	20600463	64422451	38108941	101	5745											
IQCH	64799	mdanderson.org;bcgsc.ca	37	chr15	67652191	67652191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attcttcattgtaggggaaaAgcagaaggtcaagaggacat	12	5	3	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	67652191	A	G	67652191	3	3	58	1	0	0	0	0	1	0	0	0	7872	72	3	2	879	2	IQCH	15	67652191	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	3229740	67652191	34879201	102	5746											
GOLGA6B	55889	broad.mit.edu;mdanderson.org	37	chr15	72954855	72954855	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgagaggcttcgggagcaGcagaagacgctacaggagca	15	9	0	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	72954855	G	A	72954855	2	1	58	1	0	0	0	0	0	0	0	1	6614	962	34	4		4	GOLGA6B	15	72954855	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	5302664	72954855	29576537	103	5747											
SYNM	23336	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	99671287	99671287	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acctgggttccactcactggAaagaacaagctagaagcggt	11	10	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	99671287	A	T	99671287	4	4	58	1	0	0	0	0	0	1	0	0	15556	247	9	5	2735	5	SYNM	15	99671287	Nonsense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	26716432	99671287	2860105	104	5748											
VASN	114990	mdanderson.org	37	chr16	4431373	4431373	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagctgcgggcactgcccccGctgcgcctgccccgcctgct	13	20	0	0	rs740374	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	4431373	G	C	4431373	2	2	58	1	0	0	0	0	0	0	0	1	17233	1074	38	5		5	VASN	16	4431373	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10		4431373	85923380	105	5749											
XPO6	23214	broad.mit.edu	37	chr16	28128693	28128693	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtagtagagatgagtgtcacGaactgctgcgtgttctgccg	14	8	2	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	28128693	G	A	28128693	2	1	58	1	0	0	0	0	0	0	0	1	17554	1049	37	1		1	XPO6	16	28128693	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	23697320	28128693	62226060	106	5750											
RBL2	5934	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	53493465	53493465	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctacgcatagcttgagtCgtcttcacaccatgctgaca	8	13	2	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	53493465	C	T	53493465	3	4	58	1	0	0	0	0	1	0	0	0	13202	884	31	1	1316	1	RBL2	16	53493465	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	25364772	53493465	36861288	107	5751											
GPR56	9289	broad.mit.edu	37	chr16	57697474	57697474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccatcagctcgggcagcAcctcgtccagccgcatctag	9	18	2	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	57697474	A	C	57697474	3	2	58	1	0	0	0	0	1	0	0	0	6757	159	6	5	2127	5	GPR56	16	57697474	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	4204009	57697474	32657279	108	5752											
MMP15	4324	broad.mit.edu	37	chr16	58075623	58075624	+	Frame_Shift_Del	DEL	CA	CA	-													gccccggcctccccagccacCacccccaggtgggaagccag					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	58075624	CA	-	58075623	7	5	58	1	0	1	0	1	0	0	0	0	9731	594	21	0	1035	0	MMP15	16	58075623	Frame_Shift_Del	DEL	CA	TCGA-KO-8408-01A-11D-2310-10	378149	58075623	32279130	109	5753	148	2									
MMP15	4324	broad.mit.edu	37	chr16	58075631	58075631	+	Frame_Shift_Del	DEL	G	G	-													ctccccagccaccacccccaGgtgggaagccagagcggccc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	58075631	G	-	58075631	7	5	58	1	0	1	0	1	0	0	0	0	9731	1000	35	0	1043	0	MMP15	16	58075631	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	8	58075631	32279122	110	5754	148	2									
TP53	7157	broad.mit.edu	37	chr17	7578176	7578176	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccccagttgcaaaccagaCctcaggcggctcatagggca	11	14	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	7578176	C	A	7578176	5	1	58	1	0	0	0	0	0	0	1	0	16486	521	18	5	621	5	TP53	17	7578176	Splice_Site	SNP	C	TCGA-KO-8408-01A-11D-2310-10		7578176	73617034	111	5755											
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	chr17	7579716	7579716	+	Frame_Shift_Del	DEL	G	G	-													ttaccagaacgttgttttcaGgaagtctgaaagacaagagc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	7579716	G	-	7579716	7	5	58	1	0	1	0	1	0	0	0	0	16486	1000	35	0	1226	0	TP53	17	7579716	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	1540	7579716	73615494	112	5756	149	2									
TP53	7157	bcgsc.ca	37	chr17	7579717	7579717	+	Frame_Shift_Del	DEL	G	G	-													taccagaacgttgttttcagGaagtctgaaagacaagagca					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	7579717	G	-	7579717	7	5	58	1	0	1	0	1	0	0	0	0	16486	1174	41	0	1227	0	TP53	17	7579717	Frame_Shift_Del	DEL	G	TCGA-KO-8408-01A-11D-2310-10	1	7579717	73615493	113	5757	149	2									
KRT38	8687	mdanderson.org	37	chr17	39595537	39595537	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcggccttggccagggtcGcatcatccaggagcttctgt	14	12	2	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	39595537	G	A	39595537	3	1	58	1	0	0	0	0	1	0	0	0	8536	1087	38	1	740	1	KRT38	17	39595537	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	32015820	39595537	41599673	114	5758											
KRT32	3882	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr17	39623194	39623194	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggagtgagaggcctcttgGatcctgctctccagctccgc	13	13	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	39623194	G	A	39623194	2	1	58	1	0	0	0	0	0	0	0	1	8529	1164	41	3		3	KRT32	17	39623194	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	27657	39623194	41572016	115	5759											
KRT19	3880	mdanderson.org	37	chr17	39684321	39684321	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccgtagccgccgccgtagGcccccgaggaggacgaggac	16	16	0	0	rs4602	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	39684321	G	C	39684321	3	2	58	1	0	0	0	0	1	0	0	0	8517	1203	42	5	1047	5	KRT19	17	39684321	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	61127	39684321	41510889	116	5760											
ACLY	47	hgsc.bcm.edu;ucsc.edu	37	chr17	40049426	40049426	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaagagggtggtgctcttTcctggtgggcaaagacacag	15	8	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	40049426	T	C	40049426	2	2	58	1	0	0	0	0	0	0	0	1	143	1797	62	4		4	ACLY	17	40049426	Silent	SNP	T	TCGA-KO-8408-01A-11D-2310-10	365105	40049426	41145784	117	5761											
CDC27	996	mdanderson.org	37	chr17	45234650	45234650	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctgtctgtgagataaActatgattaggtacttgtgt	11	5	2	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	45234650	A	G	45234650	2	3	58	1	0	0	0	0	0	0	0	1	3095	40	2	2		2	CDC27	17	45234650	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10	5185224	45234650	35960560	118	5762											
ZNF516	9658	broad.mit.edu	37	chr18	74153725	74153726	+	Frame_Shift_Ins	INS	-	-	C													cttgaggtactcggccggctINScggccaccttaccccgcgtg					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	74153726	-	C	74153725	7	5	58	1	0	1	1	0	0	0	0	0	18065	1551	54	0	2226	0	ZNF516	18	74153725	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10		74153725	3923523	119	5763											
ABCA7	10347	mdanderson.org	37	chr19	1047002	1047002	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttcctgctcagcgccgcActgctggttctggtgctcaa	10	16	3	0	rs3752234	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	1047002	A	G	1047002	2	3	58	1	0	0	0	0	0	0	0	1	37	146	6	2		2	ABCA7	19	1047002	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10		1047002	58081981	120	5764											
HMHA1	23526	mdanderson.org	37	chr19	1081617	1081617	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgggcacaagaagctgcaAggccgcctgcagctgttcgg	15	12	0	1	rs10404947	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	1081617	A	G	1081617	2	3	58	1	0	0	0	0	0	0	0	1	7298	69	3	2		2	HMHA1	19	1081617	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10	34615	1081617	58047366	121	5765											
ADAT3	113179	mdanderson.org	37	chr19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgccgcgcccgtcctggacAagcgccagacctcacgcctc	10	20	1	1	rs150715312	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	1912251	A	G	1912251	3	3	58	1	0	0	0	0	1	0	0	0	286	131	5	4	159	4	ADAT3	19	1912251	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	830634	1912251	57216732	122	5766											
ZNRF4	148066	mdanderson.org	37	chr19	5455971	5455971	+	Missense_Mutation	SNP	G	G	T													tgggcaaccgctctctgggcGccatcgtgctgatccgccgc					rs8103406	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	5455971	G	T	5455971	3	4	58	1	0	0	0	0	1	0	0	0	18317	1087	38	5	471	5	ZNRF4	19	5455971	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	3543720	5455971	53673012	123	5767	150	2									
ZNRF4	148066	mdanderson.org	37	chr19	5455978	5455978	+	Missense_Mutation	SNP	T	T	C													ccgctctctgggcgccatcgTgctgatccgccgctacgact					rs8107825	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	5455978	T	C	5455978	3	2	58	1	0	0	0	0	1	0	0	0	18317	1696	59	2	478	2	ZNRF4	19	5455978	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	7	5455978	53673005	124	5768	150	2									
PNPLA6	10908	mdanderson.org	37	chr19	7615903	7615903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcactgacccggcagccGcgagccacgacggtgcacgc	15	16	0	1	rs8107538		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	7615903	G	A	7615903	2	1	58	1	0	0	0	0	0	0	0	1	12249	1074	38	1		1	PNPLA6	19	7615903	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	2159925	7615903	51513080	125	5769											
ZNF709	163051	broad.mit.edu	37	chr19	12575585	12575585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtttctctccagtgtgagttCgttcatggatttgaaaagaa	10	6	2	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	12575585	C	T	12575585	3	4	58	1	0	0	0	0	1	0	0	0	18218	884	31	1	778	1	ZNF709	19	12575585	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	4959682	12575585	46553398	126	5770											
CPAMD8	27151	hgsc.bcm.edu;ucsc.edu	37	chr19	17088187	17088187	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgatgctctacctggttttcGaagaaggtctcgactgcaaa	10	10	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	17088187	G	A	17088187	2	1	58	1	0	0	0	0	0	0	0	1	3824	1049	37	1		1	CPAMD8	19	17088187	Silent	SNP	G	TCGA-KO-8408-01A-11D-2310-10	4512602	17088187	42040796	127	5771											
ZNF676	163223	mdanderson.org	37	chr19	22363448	22363448	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtttctctccagtatgaatAatcttatgtttagtaaggat	8	5	2	1	rs200452805		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	22363448	A	T	22363448	2	4	58	1	0	0	0	0	0	0	0	1	18188	358	13	5		5	ZNF676	19	22363448	Silent	SNP	A	TCGA-KO-8408-01A-11D-2310-10	5275261	22363448	36765535	128	5772											
FFAR1	2864	mdanderson.org	37	chr19	35843086	35843086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcctccgggcactggcccGctccggcctgacgcacaggc	13	19	0	1	rs2301151	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	35843086	G	A	35843086	3	1	58	1	0	0	0	0	1	0	0	0	5876	1087	38	1	634	1	FFAR1	19	35843086	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	13479638	35843086	23285897	129	5773											
RYR1	6261	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	38946146	38946146	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcttctccacaaacttggaCtggctggtcagcaagctgga	10	12	3	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	38946146	C	G	38946146	3	3	58	1	0	0	0	0	1	0	0	0	13863	564	20	5	1690	5	RYR1	19	38946146	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	3103060	38946146	20182837	130	5774											
NFKBIB	4793	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	39398202	39398202	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaaccccatcctcgcccGcctcctccgtgcacacggag	8	22	0	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	39398202	G	A	39398202	3	1	58	1	0	0	0	0	1	0	0	0	10457	1087	38	1	890	1	NFKBIB	19	39398202	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	452056	39398202	19730781	131	5775											
ZNF45	7596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	44418134	44418134	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tacagtgtacattaagatctGagctccgactgaagcccttc	8	11	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	44418134	G	C	44418134	4	2	58	1	0	0	0	0	0	1	0	0	18026	1294	45	5	598	5	ZNF45	19	44418134	Nonsense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	5019932	44418134	14710849	132	5776											
RTN2	6253	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	45991752	45991752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgccggtacagcagggGgatggtgaatagaccaatca	15	8	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	45991752	G	T	45991752	3	4	58	1	0	0	0	0	1	0	0	0	13821	1232	43	5	175	5	RTN2	19	45991752	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	1573618	45991752	13137231	133	5777											
PLEKHA4	57664	broad.mit.edu	37	chr19	49340604	49340605	+	Frame_Shift_Ins	INS	-	-	G													tgccccctcgtcttgtggcaINSggaccggaggggcgatcccg					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	49340605	-	G	49340604	7	5	58	1	0	1	1	0	0	0	0	0	12138	188	7	0	61	0	PLEKHA4	19	49340604	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	3348852	49340604	9788379	134	5778											
LILRA6	79168	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	54744177	54744177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	catgagttccaggggctcacTggggaaagacagcaggtggg	17	8	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	54744177	T	A	54744177	3	1	58	1	0	0	0	0	1	0	0	0	8852	1580	55	5	226	5	LILRA6	19	54744177	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	5403573	54744177	4384806	135	5779											
CPXM1	56265	broad.mit.edu;mdanderson.org	37	chr20	2777897	2777897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgcgcctccctggagccagGtctggggcagcaggcgaatg	17	13	1	0	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	2777897	G	A	2777897	3	1	58	1	0	0	0	0	1	0	0	0	3866	1261	44	3	1467	3	CPXM1	20	2777897	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10		2777897	60247623	136	5780											
BTBD3	22903	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr20	11903397	11903397	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtgttaatttcctggagAccagcctgagtgccaagaat	10	10	0	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		G	11903397	A	G	11903397	3	3	58	1	0	0	0	0	1	0	0	0	1553	275	10	2	666	2	BTBD3	20	11903397	Missense_Mutation	SNP	A	TCGA-KO-8408-01A-11D-2310-10	9125500	11903397	51122123	137	5781											
RBBP9	10741	broad.mit.edu	37	chr20	18477730	18477731	+	Frame_Shift_Ins	INS	-	-	C													accttctccagctcctttttINScacccagccataccagccgt					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	18477731	-	C	18477730	7	5	58	1	0	1	1	0	0	0	0	0	13198	1792	62	0	498	0	RBBP9	20	18477730	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	6574333	18477730	44547790	138	5782											
MYLK2	85366	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr20	30408125	30408125	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaggagagggtgacaggggCggggggcccgcggagggcag	24	7	0	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	30408125	C	T	30408125	2	4	58	1	0	0	0	0	0	0	0	1	10135	755	27	1		1	MYLK2	20	30408125	Silent	SNP	C	TCGA-KO-8408-01A-11D-2310-10	11930395	30408125	32617395	139	5783											
SEMG2	6407	mdanderson.org;bcgsc.ca	37	chr20	43851703	43851703	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaagtacagaagaaagacGactcaactatggaggaaaga	10	6	2	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	43851703	G	A	43851703	3	1	58	1	0	0	0	0	1	0	0	0	14142	1058	37	1	1436	1	SEMG2	20	43851703	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	13443578	43851703	19173817	140	5784											
PREX1	57580	broad.mit.edu	37	chr20	47307517	47307518	+	Frame_Shift_Ins	INS	-	-	C													ccgctcgcggatgatggcatINSccagccacttctgcttctcc					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	47307518	-	C	47307517	7	5	58	1	0	1	1	0	0	0	0	0	12565	1435	50	0	3953	0	PREX1	20	47307517	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	3455814	47307517	15718003	141	5785											
DIDO1	11083	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr20	61513562	61513562	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtgctgacagccgcgtctGcagagcagagtggatacttg	15	9	1	3	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	61513562	G	C	61513562	3	2	58	1	0	0	0	0	1	0	0	0	4559	1319	46	5	2980	5	DIDO1	20	61513562	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	14206045	61513562	1511958	142	5786											
ZBTB46	140685	broad.mit.edu;ucsc.edu	37	chr20	62384061	62384061	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgtggcgcttcatgtgcTcgcgccgcgtgaacttcttc	13	13	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	62384061	T	C	62384061	3	2	58	1	0	0	0	0	1	0	0	0	17652	1551	54	2	401	2	ZBTB46	20	62384061	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	870499	62384061	641459	143	5787											
HIRA	7290	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr22	19363305	19363305	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caatgcagcaggagtagaggTagcattcatactggggtgaa	14	6	1	2	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	19363305	T	C	19363305	3	2	58	1	0	0	0	0	1	0	0	0	7178	1638	57	2	1473	2	HIRA	22	19363305	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10		19363305	31941261	144	5788											
YDJC	150223	mdanderson.org	37	chr22	21982892	21982892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccaagagcaagagaaagCgtcggggccttcaccgcagc	12	14	1	2	rs2298428	byfrequency	TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		T	21982892	C	T	21982892	3	4	58	1	0	0	0	0	1	0	0	0	17577	768	27	1	188	1	YDJC	22	21982892	Missense_Mutation	SNP	C	TCGA-KO-8408-01A-11D-2310-10	2619587	21982892	29321674	145	5789											
RHBDD3	25807	broad.mit.edu	37	chr22	29661514	29661515	+	Frame_Shift_Ins	INS	-	-	C													gggccaggaccaggccggggINSccggcccccaccagccacag					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	29661515	-	C	29661514	7	5	58	1	0	1	1	0	0	0	0	0	13411	1190	42	0	1078	0	RHBDD3	22	29661514	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	7678622	29661514	21643052	146	5790											
CSF2RB	1439	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr22	37326788	37326788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccactgccagattcccGtgcccgaccccgcgacccac	9	21	0	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	37326788	G	A	37326788	3	1	58	1	0	0	0	0	1	0	0	0	3966	1145	40	1	954	1	CSF2RB	22	37326788	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10	7665274	37326788	13977778	147	5791											
CXorf21	80231	broad.mit.edu;mdanderson.org	37	chrX	30577710	30577710	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	attcttctctctagacacttGaagactgatttggtctacac	6	10	4	4	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	30577710	G	C	30577710	3	2	58	1	0	0	0	0	1	0	0	0	4132	1299	45	5	146	5	CXorf21	23	30577710	Missense_Mutation	SNP	G	TCGA-KO-8408-01A-11D-2310-10		30577710	124692850	148	5792											
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	chrX	76937378	76937378	+	Frame_Shift_Del	DEL	A	A	-													tttcagtctcttatcagaagAgttacaaccatcttctttca					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	76937378	A	-	76937378	7	5	58	1	0	1	0	1	0	0	0	0	1212	304	11	0	4216	0	ATRX	23	76937378	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10	46359668	76937378	78333182	149	5793	151	2									
ATRX	546	bcgsc.ca	37	chrX	76937379	76937379	+	Frame_Shift_Del	DEL	A	A	-													ttcagtctcttatcagaagaGttacaaccatcttctttcat					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		-	76937379	A	-	76937379	7	5	58	1	0	1	0	1	0	0	0	0	1212	1020	36	0	4217	0	ATRX	23	76937379	Frame_Shift_Del	DEL	A	TCGA-KO-8408-01A-11D-2310-10	1	76937379	78333181	150	5794	151	2									
ATP7A	538	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	77275864	77275864	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaaccctttctcaaattgTcaaacttgtggaagaggcac	7	11	2	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	77275864	T	C	77275864	3	2	58	1	0	0	0	0	1	0	0	0	1194	1667	58	2	2796	2	ATP7A	23	77275864	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	338485	77275864	77994696	151	5795											
SYTL4	94121	broad.mit.edu	37	chrX	99942167	99942168	+	Frame_Shift_Ins	INS	-	-	A													tcatacttcagggaaaaggcINSaatcctgccagtcacaaaga					novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		A	99942168	-	A	99942167	7	5	58	1	0	1	1	0	0	0	0	0	15586	710	25	0	962	0	SYTL4	23	99942167	Frame_Shift_Ins	INS	-	TCGA-KO-8408-01A-11D-2310-10	22666303	99942167	55328393	152	5796											
HCFC1	3054	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	153230057	153230057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtagaggtcattgctgtatTtcccatactccaccatccca	6	14	1	1	novel		TCGA-KO-8408-01A-11D-2310-10	TCGA-KO-8408-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	61026c67-aa07-4509-b221-ca1f26ffead1	759ed56f-0af5-46be-a93c-934e2863a5dd		C	153230057	T	C	153230057	3	2	58	1	0	0	0	0	1	0	0	0	7049	1841	64	4	5893	4	HCFC1	23	153230057	Missense_Mutation	SNP	T	TCGA-KO-8408-01A-11D-2310-10	53287890	153230057	2040503	153	5797											
ARHGEF10L	55160	mdanderson.org	37	chr1	18023690	18023690	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agatggccgacgaccccgacAtctgggtgcgcagccggccc	14	16	1	1	rs2270976	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	18023690	A	G	18023690	3	3	59	1	0	0	0	0	1	0	0	0	897	217	8	4	3765	4	ARHGEF10L	1	18023690	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10		18023690	231226931	1	5798											
KIF17	57576	broad.mit.edu;mdanderson.org	37	chr1	21014271	21014271	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgcaaacctggaggaaacCtgagtcttggagacatcgtc	11	11	1	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	21014271	C	T	21014271	2	4	59	1	0	0	0	0	0	0	0	1	8340	680	24	4		4	KIF17	1	21014271	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	2990581	21014271	228236350	2	5799											
RBMXL1	494115	mdanderson.org	37	chr1	89449141	89449141	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatgtgtcctcctcgtgaAggaggtcccctggttcctcc	10	15	0	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	89449141	A	G	89449141	2	3	59	1	0	0	0	0	0	0	0	1	13245	59	3	2		2	RBMXL1	1	89449141	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	68434870	89449141	159801480	3	5800											
VANGL1	81839	broad.mit.edu	37	chr1	116226629	116226630	+	Frame_Shift_Ins	INS	-	-	A													cagctgctcggcgcagggacINStcaagccacaacgagttgta					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	116226630	-	A	116226629	7	5	59	1	0	1	1	0	0	0	0	0	17225	564	20	0	1029	0	VANGL1	1	116226629	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	26777488	116226629	133023992	4	5801											
IGSF3	3321	mdanderson.org	37	chr1	117158772	117158772	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggtgtgtggcattcataCtccccggcatcccgggcctg	13	14	1	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	117158772	C	T	117158772	2	4	59	1	0	0	0	0	0	0	0	1	7662	564	20	4		4	IGSF3	1	117158772	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	932143	117158772	132091849	5	5802											
NBPF14	25832	mdanderson.org	37	chr1	148004733	148004733	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacggagtcgaataacataTatccagtgagtcctgcaaga	10	8	0	3	rs78149412	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	148004733	T	C	148004733	3	2	59	1	0	0	0	0	1	0	0	0	10273	1406	49	4	188	4	NBPF14	1	148004733	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	30845961	148004733	101245888	6	5803											
PKLR	5313	broad.mit.edu	37	chr1	155270047	155270048	+	Frame_Shift_Ins	INS	-	-	C													ggtcagttgggccacactggINScccgccgcagataccccgct					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	155270048	-	C	155270047	7	5	59	1	0	1	1	0	0	0	0	0	12056	1203	42	0	1639	0	PKLR	1	155270047	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	7265314	155270047	93980574	7	5804											
HDGF	3068	ucsc.edu	37	chr1	156721154	156721154	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgggccggccagtgtgggTagcccttcatcttggcgaac	14	14	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	156721154	T	G	156721154	3	3	59	1	0	0	0	0	1	0	0	0	7076	1638	57	5	678	5	HDGF	1	156721154	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	1451107	156721154	92529467	8	5805											
C1orf198	84886	ucsc.edu	37	chr1	231004156	231004156	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggccatggggctcagcgAcgagaagtaagtgaagcgct	15	10	1	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	231004156	A	G	231004156	3	3	59	1	0	0	0	0	1	0	0	0	2045	275	10	2	896	2	C1orf198	1	231004156	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	74283002	231004156	18246465	9	5806											
GTF3C2	2976	broad.mit.edu;ucsc.edu	37	chr2	27550102	27550102	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgagaatgcccctctcccTcctgcatgcgcagcattggt	10	14	1	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	27550102	T	C	27550102	2	2	59	1	0	0	0	0	0	0	0	1	6931	1551	54	2		2	GTF3C2	2	27550102	Silent	SNP	T	TCGA-KO-8409-01A-11D-2310-10		27550102	215649271	10	5807											
ALK	238	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr2	29416536	29416536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccatattcacgtgtccccCttccacggccggccctctag	8	18	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	29416536	C	T	29416536	3	4	59	1	0	0	0	0	1	0	0	0	525	681	24	4	449	4	ALK	2	29416536	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	1866434	29416536	213782837	11	5808											
IMMT	10989	broad.mit.edu	37	chr2	86374840	86374840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcacctgctcaaattcagaCttcaattcctgttcttgtac	4	13	5	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	86374840	C	T	86374840	2	4	59	1	0	0	0	0	0	0	0	1	7779	564	20	4		4	IMMT	2	86374840	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	56958304	86374840	156824533	12	5809											
PCDP1	0	ucsc.edu	37	chr2	120397411	120397411	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagtccctggttctctccTccctgccggacccctccaag	7	20	1	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	120397411	T	C	120397411	3	2	59	1	0	0	0	0	1	0	0	0	11651	1551	54	2	1380	2	PCDP1	2	120397411	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	34022571	120397411	122801962	13	5810											
POTEE	445582	broad.mit.edu	37	chr2	132021077	132021078	+	Frame_Shift_Ins	INS	-	-	A													tggaggatattgaaagtgtgINSaaaaaaaagaatgataatct					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	132021078	-	A	132021077	7	5	59	1	0	1	1	0	0	0	0	0	12344	1277	45	0	2107	0	POTEE	2	132021077	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	11623666	132021077	111178296	14	5811											
UBR3	130507	mdanderson.org	37	chr2	170684548	170684548	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gactgcggggacagcaacgtGatgcgggagagcgggtgagt	20	7	0	3	rs79036304	byfrequency;by1000genomes	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	170684548	G	A	170684548	2	1	59	1	0	0	0	0	0	0	0	1	17009	1277	45	4		4	UBR3	2	170684548	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	38663471	170684548	72514825	15	5812											
SATB2	23314	broad.mit.edu	37	chr2	200136984	200136984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgcttttgtcagcattttCctcctcagcctccactttgt	5	14	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	200136984	C	T	200136984	3	4	59	1	0	0	0	0	1	0	0	0	13950	864	30	3	53	3	SATB2	2	200136984	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	29452436	200136984	43062389	16	5813											
NCL	4691	broad.mit.edu	37	chr2	232322444	232322444	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aatagatcgcccatcgatctCtgttccctgcttttcttcaa	5	13	3	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	232322444	C	T	232322444	3	4	59	1	0	0	0	0	1	0	0	0	10305	922	32	4	799	4	NCL	2	232322444	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	32185460	232322444	10876929	17	5814											
SMARCC1	6599	bcgsc.ca	37	chr3	47651783	47651783	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccatgtggaagttttggCgttcagtaagcaactgctgc	12	8	1	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	47651783	C	G	47651783	3	3	59	1	0	0	0	0	1	0	0	0	14873	768	27	5	513	5	SMARCC1	3	47651783	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10		47651783	150370647	18	5815											
TSC22D2	9819	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	150127405	150127405	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtctccccaaacctcctcCtagatgggcagctggcagcg	10	17	1	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	150127405	C	T	150127405	2	4	59	1	0	0	0	0	0	0	0	1	16713	680	24	4		4	TSC22D2	3	150127405	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	102475622	150127405	47895025	19	5816											
MUC4	4585	mdanderson.org	37	chr3	195506425	195506425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtagatActgaggaagtgctggtgaca	17	6	0	4	rs201051713		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	195506425	A	G	195506425	3	3	59	1	0	0	0	0	1	0	0	0	10056	391	14	2		2	MUC4	3	195506425	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	45379020	195506425	2516005	20	5817			1	62		3	3	3533	N	G_A	6.457688e-05
MUC4	4585	mdanderson.org	37	chr3	195506450	195506450	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagtgctggtgacaggaaGaggggtggcgtgacctgtgg	21	5	0	3	rs201981197		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	195506450	G	C	195506450	3	2	59	1	0	0	0	0	1	0	0	0	10056	942	33	5		5	MUC4	3	195506450	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	25	195506450	2515980	21	5818			1	62		3	3	3533	N	G_A	6.457688e-05
MUC4	4585	broad.mit.edu	37	chr3	195509957	195509957	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggatggtgacaggaagagAggtggcatgacctgtgaaca	17	5	0	4	rs201699932	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	195509957	A	G	195509957	3	3	59	1	0	0	0	0	1	0	0	0	10056	304	11	2		2	MUC4	3	195509957	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	3507	195509957	2512473	22	5819			1	62		3	3	3533	N	G_A	6.457688e-05
CPZ	8532	mdanderson.org	37	chr4	8594574	8594574	+	Missense_Mutation	SNP	T	T	C													ccccaccatgccgcccccgcTgccgctgctgctccttacag					rs2302583	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	8594574	T	C	8594574	3	2	59	1	0	0	0	0	1	0	0	0	3868	1580	55	2	16	2	CPZ	4	8594574	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10		8594574	182559702	23	5820	152	2									
CPZ	8532	mdanderson.org	37	chr4	8594577	8594577	+	Missense_Mutation	SNP	C	C	T													caccatgccgcccccgctgcCgctgctgctccttacagtcc					rs34964084	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	8594577	C	T	8594577	3	4	59	1	0	0	0	0	1	0	0	0	3868	652	23	1	19	1	CPZ	4	8594577	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	3	8594577	182559699	24	5821	152	2									
G3BP2	9908	broad.mit.edu	37	chr4	76570758	76570758	+	Frame_Shift_Del	DEL	A	A	-													cccacaattccacgtggaccAccgggacctcgatcattgcg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	76570758	A	-	76570758	7	5	59	1	0	1	0	1	0	0	0	0	6194	146	6	0	147	0	G3BP2	4	76570758	Frame_Shift_Del	DEL	A	TCGA-KO-8409-01A-11D-2310-10	67976181	76570758	114583518	25	5822											
ANTXR2	118429	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr4	80954628	80954628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agattactggggacctactcGttgtatatgtttcatttaca	8	7	1	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	80954628	G	A	80954628	3	1	59	1	0	0	0	0	1	0	0	0	712	1145	40	1	750	1	ANTXR2	4	80954628	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	4383870	80954628	110199648	26	5823											
PDHA2	5161	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	96761794	96761794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctatgggggcaatggcatcGtcggtgcacagggccccctg	15	12	1	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	96761794	G	A	96761794	3	1	59	1	0	0	0	0	1	0	0	0	11744	1145	40	1	495	1	PDHA2	4	96761794	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	15807166	96761794	94392482	27	5824											
NEUROG2	63973	mdanderson.org	37	chr4	113436044	113436044	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcagggcggcgctggcTcctcccgggctcagcaacac	13	17	2	0	rs901474	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	113436044	T	G	113436044	2	3	59	1	0	0	0	0	0	0	0	1	10432	1538	54	5		5	NEUROG2	4	113436044	Silent	SNP	T	TCGA-KO-8409-01A-11D-2310-10	16674250	113436044	77718232	28	5825											
FRG1	2483	mdanderson.org	37	chr4	190873379	190873379	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatagccattgaaatggatAagggaacctatatacatgca	8	8	0	1	rs1803592		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	190873379	A	G	190873379	3	3	59	1	0	0	0	0	1	0	0	0	6098	363	13	4	206	4	FRG1	4	190873379	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	77437335	190873379	280897	29	5826											
RNF145	153830	mdanderson.org	37	chr5	158630641	158630641	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gccatgttgtttttttttttCtttttttttttcttggagaa	6	4	2	1	rs74841177		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	158630641	C	T	158630641	2	4	59	1	0	0	0	0	0	0	0	1	13542	912	32	4		4	RNF145	5	158630641	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10		158630641	22284619	30	5827											
GABRB2	2561	hgsc.bcm.edu	37	chr5	160886707	160886709	+	In_Frame_Del	DEL	CTT	CTT	-													gtcactccgtgcacaaatgaCttcttatcgttcaggaaata					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	160886709	CTT	-	160886707	7	5	59	1	0	1	0	1	0	0	0	0	6219	564	20	0	1185	0	GABRB2	5	160886707	In_Frame_Del	DEL	CTT	TCGA-KO-8409-01A-11D-2310-10	2256066	160886707	20028553	31	5828	153	2									
GABRB2	2561	bcgsc.ca	37	chr5	160886708	160886710	+	In_Frame_Del	DEL	CTT	CTT	-													tcactccgtgcacaaatgacTtcttatcgttcaggaaatag					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	160886710	CTT	-	160886708	7	5	59	1	0	1	0	1	0	0	0	0	6219	1609	56	0	1186	0	GABRB2	5	160886708	In_Frame_Del	DEL	CTT	TCGA-KO-8409-01A-11D-2310-10	1	160886708	20028552	32	5829	153	2									
CAP2	10486	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr6	17507412	17507412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttacagaatgacgtggccGcacttctgaaacccatatcg	9	12	1	3	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	17507412	G	A	17507412	3	1	59	1	0	0	0	0	1	0	0	0	2645	1087	38	1	327	1	CAP2	6	17507412	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10		17507412	153607655	33	5830											
KIAA0319	9856	mdanderson.org	37	chr6	24551664	24551664	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcagactgtcttaccaTatttgggcctcagttccatt	7	11	3	1	rs807534	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	24551664	T	C	24551664	3	2	59	1	0	0	0	0	1	0	0	0	8229	1406	49	4	188	4	KIAA0319	6	24551664	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	7044252	24551664	146563403	34	5831											
OR2W1	26692	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr6	29012270	29012270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggcttgcttttgacttcGttctcagcacagctttggca	10	11	1	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	29012270	G	A	29012270	3	1	59	1	0	0	0	0	1	0	0	0	11111	1145	40	1	283	1	OR2W1	6	29012270	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	4460606	29012270	142102797	35	5832											
OR2J3	442186	mdanderson.org	37	chr6	29080088	29080088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attacactgtcctcatgcacCctcgtttctgccacctgctg	6	16	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	29080088	C	T	29080088	3	4	59	1	0	0	0	0	1	0	0	0	11083	623	22	3	423	3	OR2J3	6	29080088	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	67818	29080088	142034979	36	5833											
HLA-C	3107	mdanderson.org	37	chr6	31239006	31239006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccgcggcggtccaggagcGcaggtcctcgttcagggcga	17	13	1	0	rs76907552		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	31239006	G	T	31239006	3	4	59	1	0	0	0	0	1	0	0	0	7255	1087	38	5	661	5	HLA-C	6	31239006	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	2158918	31239006	139876061	37	5834											
RIMS1	22999	broad.mit.edu	37	chr6	73102466	73102466	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattttcttgatggattgggAccagcccagcttgttggccg	13	9	1	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	73102466	A	G	73102466	2	3	59	1	0	0	0	0	0	0	0	1	13462	262	10	2		2	RIMS1	6	73102466	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	41863460	73102466	98012601	38	5835											
UNC93A	54346	mdanderson.org	37	chr6	167728900	167728900	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accccacgctccaggacaggTcaaccaggcagaggatgaag	12	13	1	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	167728900	T	C	167728900	3	2	59	1	0	0	0	0	1	0	0	0	17102	1667	58	2	1364	2	UNC93A	6	167728900	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	94626434	167728900	3386167	39	5836											
AVL9	23080	broad.mit.edu	37	chr7	32620439	32620439	+	Frame_Shift_Del	DEL	A	A	-													ttcagaatagtgaacgtggcAaaaaaattggaaacgtcatg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	32620439	A	-	32620439	7	5	59	1	0	1	0	1	0	0	0	0	1232	131	5	0	1826	0	AVL9	7	32620439	Frame_Shift_Del	DEL	A	TCGA-KO-8409-01A-11D-2310-10		32620439	126518224	40	5837											
SPDYE1	285955	broad.mit.edu	37	chr7	44046997	44046997	+	Frame_Shift_Del	DEL	A	A	-													tccagttataccgttccatgAacccgagggccaggaagaac					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	44046997	A	-	44046997	7	5	59	1	0	1	0	1	0	0	0	0	15129	246	9	0	781	0	SPDYE1	7	44046997	Frame_Shift_Del	DEL	A	TCGA-KO-8409-01A-11D-2310-10	11426558	44046997	115091666	41	5838											
TMEM120A	83862	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	75617798	75617798	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaggatgatggtgaggtaGagcttgaacttctcatactc	12	6	1	5	rs114564646	by1000genomes;alternate_allele	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	75617798	G	C	75617798	2	2	59	1	0	0	0	0	0	0	0	1	16137	929	33	5		5	TMEM120A	7	75617798	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	31570801	75617798	83520865	42	5839											
ADAM22	53616	mdanderson.org	37	chr7	87564497	87564497	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggggcgacctcggtggccCgcaggtgagaggctcggtcc	19	13	0	1	rs2279542	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	87564497	C	G	87564497	3	3	59	1	0	0	0	0	1	0	0	0	244	652	23	5	248	5	ADAM22	7	87564497	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	11946699	87564497	71574166	43	5840											
SLC13A1	6561	bcgsc.ca	37	chr7	122759248	122759248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattagccatgctggtaatgAacccagaggagataatttat	9	6	0	3	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	122759248	A	G	122759248	3	3	59	1	0	0	0	0	1	0	0	0	14489	246	9	4	400	4	SLC13A1	7	122759248	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	35194751	122759248	36379415	44	5841											
TNFRSF10B	8795	mdanderson.org	37	chr8	22926313	22926313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagggtcttggggacccggGgcccaggcctggctccccgc	16	16	1	0	rs1129424	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	22926313	G	A	22926313	3	1	59	1	0	0	0	0	1	0	0	0	16385	1232	43	3	1263	3	TNFRSF10B	8	22926313	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10		22926313	123437709	45	5842											
SLC20A2	6575	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr8	42294728	42294728	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccaccgcgttacagtagctCgagtagctgtcgtagcgcag	13	12	0	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	42294728	C	T	42294728	2	4	59	1	0	0	0	0	0	0	0	1	14537	871	31	1		1	SLC20A2	8	42294728	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	19368415	42294728	104069294	46	5843											
ZC3H3	23144	bcgsc.ca	37	chr8	144522319	144522319	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcttgcagagcctgttggAgcacgctgctgctaaggcag	14	11	0	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	144522319	A	G	144522319	3	3	59	1	0	0	0	0	1	0	0	0	17674	304	11	2	147	2	ZC3H3	8	144522319	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	102227591	144522319	1841703	47	5844											
DMRTA1	63951	broad.mit.edu	37	chr9	22451467	22451468	+	Frame_Shift_Ins	INS	-	-	A													ctgcaaaggggatgtggtccINSaagccattgaacaggtttta					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	22451468	-	A	22451467	7	5	59	1	0	1	1	0	0	0	0	0	4625	595	21	0	1078	0	DMRTA1	9	22451467	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		22451467	118761964	48	5845											
KIF24	347240	broad.mit.edu	37	chr9	34257343	34257344	+	Frame_Shift_Ins	INS	-	-	GGGG													ccctctccttctgatgtggcINSgggatgtttgtccaagcttc					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		GGGG	34257344	-	GGGG	34257343	7	5	59	1	0	1	1	0	0	0	0	0	8353	755	27	0	1856	0	KIF24	9	34257343	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	11805876	34257343	106956088	49	5846											
COL5A1	1289	broad.mit.edu	37	chr9	137645718	137645719	+	Frame_Shift_Ins	INS	-	-	G													ccccctgggagcggaggtttINSgaagggcgagccgggagacg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	137645719	-	G	137645718	7	5	59	1	0	1	1	0	0	0	0	0	3725	1821	63	0	1800	0	COL5A1	9	137645718	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	103388375	137645718	3567713	50	5847											
DPP7	29952	hgsc.bcm.edu	37	chr9	140008471	140008471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accgaacggcagcgacttccCgtagtagcgctgggggaacg	15	12	0	0	rs138978681		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	140008471	C	T	140008471	3	4	59	1	0	0	0	0	1	0	0	0	4768	652	23	1	1187	1	DPP7	9	140008471	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	2362753	140008471	1204960	51	5848											
GPR158	57512	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	25887315	25887315	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttggattagctgggaaaacCcaaacagcaggtgtggaaga	13	7	0	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	25887315	C	G	25887315	2	3	59	1	0	0	0	0	0	0	0	1	6720	610	22	5		5	GPR158	10	25887315	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10		25887315	109647432	52	5849											
MUC6	4588	mdanderson.org	37	chr11	1016885	1016885	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagggactgctccctgtAggtggggagtgtgtggtgaa	19	5	0	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	1016885	A	C	1016885	2	2	59	1	0	0	0	0	0	0	0	1	10058	407	15	5		5	MUC6	11	1016885	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10		1016885	133989631	53	5850											
MUC6	4588	mdanderson.org	37	chr11	1018341	1018341	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccttgagcgttgttGgtggaggaatggtacctgtt	16	6	0	1	rs79748612		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	1018341	G	A	1018341	3	1	59	1	0	0	0	0	1	0	0	0	10058	1348	47	4	2871	4	MUC6	11	1018341	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	1456	1018341	133988175	54	5851											
MUC5B	727897	broad.mit.edu	37	chr11	1260210	1260211	+	Frame_Shift_Ins	INS	-	-	C													gctgcctacgcccaggcctgINSccacgacgcgggcctgtgtg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	1260211	-	C	1260210	7	5	59	1	0	1	1	0	0	0	0	0	10057	1319	46	0	3518	0	MUC5B	11	1260210	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	241869	1260210	133746306	55	5852											
UEVLD	55293	mdanderson.org	37	chr11	18579859	18579859	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgagaggtctaagaggaCaagcctgtctgcaataccct	10	10	3	2	rs199752573		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	18579859	C	A	18579859	3	1	59	1	0	0	0	0	1	0	0	0	17039	478	17	5	808	5	UEVLD	11	18579859	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	17319649	18579859	116426657	56	5853											
ANO5	203859	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr11	22291963	22291963	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagttttggaccccttggGcttttctatgagtacttaga	10	7	1	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	22291963	G	A	22291963	2	1	59	1	0	0	0	0	0	0	0	1	700	1190	42	3		3	ANO5	11	22291963	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	3712104	22291963	112714553	57	5854											
ANO3	63982	broad.mit.edu;mdanderson.org	37	chr11	26465370	26465370	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttcatttgctgacctcagCgatttttgtttgggtaagtt	10	6	2	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	26465370	C	T	26465370	2	4	59	1	0	0	0	0	0	0	0	1	698	767	27	1		1	ANO3	11	26465370	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	4173407	26465370	108541146	58	5855											
KIF18A	81930	mdanderson.org	37	chr11	28119446	28119446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agtgttttccggacgtacacGaactactactttcatatggt	8	9	1	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	28119446	G	A	28119446	3	1	59	1	0	0	0	0	1	0	0	0	8341	1058	37	1	2711	1	KIF18A	11	28119446	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	1654076	28119446	106887070	59	5856											
C11orf83	790955	bcgsc.ca	37	chr11	62439458	62439458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggacccaaggagcagggagGaggcggccaggacccagcag	18	11	0	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	62439458	G	A	62439458	3	1	59	1	0	0	0	0	1	0	0	0	1677	1175	41	3	160	3	C11orf83	11	62439458	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	34320012	62439458	72567058	60	5857											
ORAOV1	220064	broad.mit.edu	37	chr11	69482297	69482297	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatcctcctcaaaatgaaAgtccggaaccttctgcacta	5	14	2	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	69482297	A	G	69482297	3	3	59	1	0	0	0	0	1	0	0	0	11339	72	3	2	13	2	ORAOV1	11	69482297	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	7042839	69482297	65524219	61	5858											
TRPC6	7225	mdanderson.org	37	chr11	101454192	101454192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctccggcagcgccccgggGagaactgcccctccggggcc	16	18	0	1	rs3802829		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	101454192	G	A	101454192	3	1	59	1	0	0	0	0	1	0	0	0	16688	1174	41	3	2804	3	TRPC6	11	101454192	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	31971895	101454192	33552324	62	5859											
TAS2R50	259296	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr12	11139408	11139408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attggcaaagtttccgagaaCaaataaaaccattattagaa	6	6	0	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	11139408	C	A	11139408	3	1	59	1	0	0	0	0	1	0	0	0	15685	478	17	5	851	5	TAS2R50	12	11139408	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10		11139408	122712487	63	5860											
MYF6	4618	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	81102660	81102660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcagcctcgagtagccttcGatgcctttcttccatcgtgg	10	13	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	81102660	G	A	81102660	3	1	59	1	0	0	0	0	1	0	0	0	10106	1058	37	1	660	1	MYF6	12	81102660	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	69963252	81102660	52749235	64	5861											
PSPC1	55269	mdanderson.org	37	chr13	20279923	20279923	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttgttcatattcatacccAtcattggaggaggaccttgg	10	8	3	0	rs555759	bycluster	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	20279923	A	G	20279923	3	3	59	1	0	0	0	0	1	0	0	0	12805	217	8	4	314	4	PSPC1	13	20279923	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10		20279923	94889955	65	5862											
POTEG	404785	broad.mit.edu	37	chr14	19553498	19553499	+	Frame_Shift_Ins	INS	-	-	G													aagcaagatgggcaagtggtINSgccgccactgcttcccctgg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	19553499	-	G	19553498	7	5	59	1	0	1	1	0	0	0	0	0	12346	1696	59	0	84	0	POTEG	14	19553498	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		19553498	87796042	66	5863											
LRFN5	145581	broad.mit.edu	37	chr14	42356435	42356435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgactcggttagatgtgAcatcaaataaattgcagaag	10	5	1	5	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	42356435	A	G	42356435	3	3	59	1	0	0	0	0	1	0	0	0	9013	275	10	2	609	2	LRFN5	14	42356435	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	22802937	42356435	64993105	67	5864											
YLPM1	56252	broad.mit.edu	37	chr14	75248591	75248592	+	Frame_Shift_Ins	INS	-	-	C													ctctctcttcaacagcacctINSccacctgtcatgcccctccc					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	75248592	-	C	75248591	7	5	59	1	0	1	1	0	0	0	0	0	17592	1538	54	0	1859	0	YLPM1	14	75248591	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	32892156	75248591	32100949	68	5865											
KIAA1737	85457	hgsc.bcm.edu	37	chr14	77580242	77580243	+	Frame_Shift_Ins	INS	-	-	C													tcccagtctgaccttcgcttINScccccgccagtcctgtctgc					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	77580243	-	C	77580242	7	5	59	1	0	1	1	0	0	0	0	0	8316	1783	62	0	791	0	KIAA1737	14	77580242	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	2331651	77580242	29769298	69	5866											
PPP1R13B	23368	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	104205041	104205041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcactatcagcagcattcaCgttgacaccaaaatccagca	5	13	3	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	104205041	C	T	104205041	3	4	59	1	0	0	0	0	1	0	0	0	12442	536	19	1	449	1	PPP1R13B	14	104205041	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	26624799	104205041	3144499	70	5867											
PLA2G4D	283748	broad.mit.edu	37	chr15	42362217	42362218	+	Frame_Shift_Ins	INS	-	-	G													gcattcccttggctggtgctINSggtcctgagggctgggttcc					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	42362218	-	G	42362217	7	5	59	1	0	1	1	0	0	0	0	0	12084	1580	55	0	344	0	PLA2G4D	15	42362217	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		42362217	60169175	71	5868											
C15orf48	84419	broad.mit.edu	37	chr15	45723237	45723238	+	Frame_Shift_Ins	INS	-	-	G													tcatgactgtggcggcgggtINSggagcctcatctttcgctgt					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	45723238	-	G	45723237	7	5	59	1	0	1	1	0	0	0	0	0	1811	1683	59	0	81	0	C15orf48	15	45723237	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	3361020	45723237	56808155	72	5869											
FAM154B	283726	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr15	82564044	82564044	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttggtactacctacaaaCgggatttgaattcgtataaa	7	7	1	1	rs150372195		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	82564044	C	T	82564044	3	4	59	1	0	0	0	0	1	0	0	0	5507	527	19	1	160	1	FAM154B	15	82564044	Missense_Mutation	SNP	C	TCGA-KO-8409-01A-11D-2310-10	36840807	82564044	19967348	73	5870											
ZSCAN10	84891	broad.mit.edu	37	chr16	3140487	3140488	+	Frame_Shift_Ins	INS	-	-	C													gggacccatcttcaccagggINSccgctagccgcagcgccccg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	3140488	-	C	3140487	7	5	59	1	0	1	1	0	0	0	0	0	18330	1190	42	0	1398	0	ZSCAN10	16	3140487	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		3140487	87214266	74	5871											
EARS2	124454	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	23546345	23546345	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccctgttgaggagcaggggCaggtgggcgaagtggggtgg	22	6	0	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	23546345	C	A	23546345	2	1	59	1	0	0	0	0	0	0	0	1	4915	697	25	5		5	EARS2	16	23546345	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10	20405858	23546345	66808408	75	5872											
BCAR1	9564	mdanderson.org	37	chr16	75269477	75269477	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacctccaaggaggacgcAgactggctgctgcgtgtgct	14	13	0	1	rs61729595	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	75269477	A	C	75269477	2	2	59	1	0	0	0	0	0	0	0	1	1352	175	7	5		5	BCAR1	16	75269477	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	51723132	75269477	15085276	76	5873											
BANP	54971	mdanderson.org	37	chr16	88105725	88105725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcctcggaccccgcggcGgcgggcgtggatgggtcgcc	18	16	0	0	rs8050209	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	88105725	G	A	88105725	2	1	59	1	0	0	0	0	0	0	0	1	1314	1103	39	1		1	BANP	16	88105725	Silent	SNP	G	TCGA-KO-8409-01A-11D-2310-10	12836248	88105725	2249028	77	5874											
PELP1	27043	broad.mit.edu	37	chr17	4575433	4575433	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagttcttcttcctcctcCtcatcctcctcttcttcttc	1	19	6	0	rs201455361	alternate_allele	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	4575433	C	T	4575433	2	4	59	1	0	0	0	0	0	0	0	1	11804	680	24	4		4	PELP1	17	4575433	Silent	SNP	C	TCGA-KO-8409-01A-11D-2310-10		4575433	76619777	78	5875											
CCDC144A	9720	broad.mit.edu	37	chr17	16665752	16665753	+	Frame_Shift_Ins	INS	-	-	A													tctccagaataaaaacttcgINScaagccgactttaataaaac					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	16665753	-	A	16665752	7	5	59	1	0	1	1	0	0	0	0	0	2802	1074	38	0	3846	0	CCDC144A	17	16665752	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	12090319	16665752	64529458	79	5876											
KRTAP9-2	83899	mdanderson.org	37	chr17	39383027	39383027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcacaccctgctgccagcccGcctgctgtgtgtccagctgc	11	18	0	0	rs71371478	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	39383027	G	T	39383027	3	4	59	1	0	0	0	0	1	0	0	0	8635	1087	38	5	123	5	KRTAP9-2	17	39383027	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	22717275	39383027	41812183	80	5877											
CDC27	996	mdanderson.org	37	chr17	45234432	45234432	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aatcaatataagacactgagGaatctgtattcaaggagtac	8	6	3	2	rs201187810		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	45234432	G	T	45234432	3	4	59	1	0	0	0	0	1	0	0	0	3095	1174	41	5	1855	5	CDC27	17	45234432	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	5851405	45234432	35960778	81	5878											
TTLL6	284076	broad.mit.edu	37	chr17	46847199	46847202	+	Frame_Shift_Del	DEL	CATG	CATG	-													gatatcaaatgtggcttgttCatgtcactctttagcaaagt					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	46847202	CATG	-	46847199	7	5	59	1	0	1	0	1	0	0	0	0	16837	826	29	0	382	0	TTLL6	17	46847199	Frame_Shift_Del	DEL	CATG	TCGA-KO-8409-01A-11D-2310-10	1612767	46847199	34348011	82	5879											
LPO	4025	ucsc.edu	37	chr17	56343529	56343529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtggaattgatcctcTggtgcggggcctgctggcca	17	10	1	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	56343529	T	C	56343529	3	2	59	1	0	0	0	0	1	0	0	0	8994	1580	55	2	1573	2	LPO	17	56343529	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	9496330	56343529	24851681	83	5880											
TEX14	56155	bcgsc.ca	37	chr17	56649410	56649410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgactgttccagcaagAggcaaactctgtcttaacct	7	11	3	2	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	56649410	A	G	56649410	3	3	59	1	0	0	0	0	1	0	0	0	15882	304	11	2	802	2	TEX14	17	56649410	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	305881	56649410	24545800	84	5881											
GAA	2548	broad.mit.edu	37	chr17	78086495	78086495	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagctcctgggagcagctcGcctcctccgtgccaggtgag	15	14	0	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	78086495	G	T	78086495	3	4	59	1	0	0	0	0	1	0	0	0	6199	1087	38	5	1919	5	GAA	17	78086495	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	21437085	78086495	3108715	85	5882											
LAMA1	284217	broad.mit.edu	37	chr18	6949154	6949155	+	Frame_Shift_Ins	INS	-	-	C													ggcctcctaggtagaacaaaINSccctccacatccagcatggt					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	6949155	-	C	6949154	7	5	59	1	0	1	1	0	0	0	0	0	8667	30	2	0	745	0	LAMA1	18	6949154	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		6949154	71128094	86	5883											
ADAMTS10	81794	broad.mit.edu	37	chr19	8650351	8650352	+	Frame_Shift_Ins	INS	-	-	T													cggctgacctcagaccagtcINSgagggccgcccactccggag					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	8650352	-	T	8650351	7	5	59	1	0	1	1	0	0	0	0	0	256	884	31	0	473	0	ADAMTS10	19	8650351	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		8650351	50478632	87	5884											
HOOK2	29911	mdanderson.org	37	chr19	12876964	12876964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgcggttggcatcctccagGtggcgctgcagctcctcctg	14	15	0	0	rs897804	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	12876964	G	C	12876964	3	2	59	1	0	0	0	0	1	0	0	0	7341	1252	44	5	731	5	HOOK2	19	12876964	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	4226613	12876964	46252019	88	5885											
MAP1S	55201	broad.mit.edu	37	chr19	17838792	17838793	+	Frame_Shift_Ins	INS	-	-	C													ccgcacccggaagcccctggINScccgccccaactcacgcgct					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	17838793	-	C	17838792	7	5	59	1	0	1	1	0	0	0	0	0	9311	1203	42	0	2617	0	MAP1S	19	17838792	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	4961828	17838792	41290191	89	5886											
ACTN4	81	mdanderson.org;bcgsc.ca	37	chr19	39217630	39217630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgggagcagctgctcaccAccattgcccgcaccatcaac	9	17	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	39217630	A	G	39217630	3	3	59	1	0	0	0	0	1	0	0	0	207	159	6	2	2294	2	ACTN4	19	39217630	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	21378838	39217630	19911353	90	5887											
EID2B	126272	mdanderson.org	37	chr19	40023308	40023308	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggccactgggccttcccgAgcctcctgcacccgaacccc	9	21	0	0	rs1123301	byfrequency	TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	40023308	A	G	40023308	2	3	59	1	0	0	0	0	0	0	0	1	5025	291	11	2		2	EID2B	19	40023308	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	805678	40023308	19105675	91	5888											
FUZ	80199	broad.mit.edu	37	chr19	50312460	50312461	+	Frame_Shift_Ins	INS	-	-	G													gggtgggctcggcccgcagaINSgtagacacagctccaggctc					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	50312461	-	G	50312460	7	5	59	1	0	1	1	0	0	0	0	0	6164	304	11	0	530	0	FUZ	19	50312460	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	10289152	50312460	8816523	92	5889											
SIGLEC11	114132	ucsc.edu	37	chr19	50455564	50455564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgatgcttacctgaagacgAcaaggcaggaacagaaagcg	12	10	0	3	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	50455564	A	G	50455564	3	3	59	1	0	0	0	0	1	0	0	0	14405	275	10	2	369	2	SIGLEC11	19	50455564	Missense_Mutation	SNP	A	TCGA-KO-8409-01A-11D-2310-10	143104	50455564	8673419	93	5890											
NLRP13	126204	broad.mit.edu	37	chr19	56424477	56424477	+	Frame_Shift_Del	DEL	T	T	-													ggtcttcccaacccctgcccTccccaccaagactatcgtct					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		-	56424477	T	-	56424477	7	5	59	1	0	1	0	1	0	0	0	0	10554	1550	54	0	2451	0	NLRP13	19	56424477	Frame_Shift_Del	DEL	T	TCGA-KO-8409-01A-11D-2310-10	5968913	56424477	2704506	94	5891											
ZNF552	79818	mdanderson.org	37	chr19	58320162	58320162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcaacttacacctcttcGcaaacaacgcctcctcaaca	3	17	2	0	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		A	58320162	G	A	58320162	3	1	59	1	0	0	0	0	1	0	0	0	18089	1087	38	1	757	1	ZNF552	19	58320162	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10	1895685	58320162	808821	95	5892											
C19orf18	147685	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	58472845	58472845	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctgagccctcttcttcaTctcctaataacggtatcctg	5	15	5	1	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	58472845	T	G	58472845	3	3	59	1	0	0	0	0	1	0	0	0	1928	1435	50	5	209	5	C19orf18	19	58472845	Missense_Mutation	SNP	T	TCGA-KO-8409-01A-11D-2310-10	152683	58472845	656138	96	5893											
SIGLEC1	6614	broad.mit.edu	37	chr20	3677991	3677992	+	Splice_Site	INS	-	-	G													caatggccaggacagtggctINSggagagcaggcggcacagct					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	3677992	-	G	3677991	8	5	59	1	0	1	1	0	0	0	1	0	14403	1594	55	0	3060	0	SIGLEC1	20	3677991	Splice_Site	INS	-	TCGA-KO-8409-01A-11D-2310-10		3677991	59347529	97	5894											
POTEH	23784	broad.mit.edu	37	chr22	16266972	16266973	+	Frame_Shift_Ins	INS	-	-	T													tcaggaaattgctggctttcINSaggtgttctgcttttccttg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	16266973	-	T	16266972	7	5	59	1	0	1	1	0	0	0	0	0	12347	835	29	0	168	0	POTEH	22	16266972	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10		16266972	35037594	98	5895											
RIMBP3	85376	broad.mit.edu	37	chr22	20458634	20458635	+	Frame_Shift_Ins	INS	-	-	C													tgctccacgaagttggagggINScaccagcccccgccggccat					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	20458635	-	C	20458634	7	5	59	1	0	1	1	0	0	0	0	0	13457	1203	42	0	2255	0	RIMBP3	22	20458634	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	4191662	20458634	30845932	99	5896											
VCX3B	425054	mdanderson.org	37	chrX	8434221	8434221	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cactgagtcaggagagccagGtggaggaaccactgagtcag	15	9	2	3	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		C	8434221	G	C	8434221	3	2	59	1	0	0	0	0	1	0	0	0	17251	1261	44	5	458	5	VCX3B	23	8434221	Missense_Mutation	SNP	G	TCGA-KO-8409-01A-11D-2310-10		8434221	146836339	100	5897											
SATL1	340562	broad.mit.edu	37	chrX	84363631	84363632	+	Frame_Shift_Ins	INS	-	-	T													ttggctggggcctgattggcINSttgggcctggttgcgatggg					novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		T	84363632	-	T	84363631	7	5	59	1	0	1	1	0	0	0	0	0	13951	797	28	0	1574	0	SATL1	23	84363631	Frame_Shift_Ins	INS	-	TCGA-KO-8409-01A-11D-2310-10	75929410	84363631	70906929	101	5898											
RGAG1	57529	broad.mit.edu	37	chrX	109698465	109698465	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacgctgttactacctgaaAgagcatggagacccccaaga	9	11	0	4	novel		TCGA-KO-8409-01A-11D-2310-10	TCGA-KO-8409-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8df1eeb4-dfc9-4a0a-8f93-98460c3ab489	ab217c1c-6141-4391-85a8-cacd3c7b1989		G	109698465	A	G	109698465	2	3	59	1	0	0	0	0	0	0	0	1	13366	69	3	2		2	RGAG1	23	109698465	Silent	SNP	A	TCGA-KO-8409-01A-11D-2310-10	25334834	109698465	45572095	102	5899											
PRAMEF1	65121	mdanderson.org	37	chr1	12855822	12855822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccactactcccaactcagtGccatcctgcctgccctgagc	6	19	1	1	rs148127907	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	12855822	G	A	12855822	3	1	60	1	0	0	0	0	1	0	0	0	12510	1319	46	4	1112	4	PRAMEF1	1	12855822	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		12855822	236394799	1	5900											
LOC649330	0	mdanderson.org	37	chr1	12907313	12907313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcatcctctccttcctcaGcctctttttcatcatccttg	3	16	6	0	rs199978302	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	12907313	G	A	12907313	3	1	60	1	0	0	0	0	1	0	0	0	8956	971	34	4	55	4	LOC649330	1	12907313	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	51491	12907313	236343308	2	5901											
LOC440563	0	mdanderson.org	37	chr1	13183631	13183631	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctgcagccaggttaataActgcaacctggctagcaatc	9	12	1	0	rs80009603	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	13183631	A	T	13183631	3	4	60	1	0	0	0	0	1	0	0	0	8949	43	2	5	643	5	LOC440563	1	13183631	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	276318	13183631	236066990	3	5902											
PRAMEF18	391003	mdanderson.org	37	chr1	13474980	13474980	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtgtcattgccgtgaaaGcagaaagtggtgaggttgga	16	5	1	3	rs12123444	bycluster	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	13474980	G	A	13474980	2	1	60	1	0	0	0	0	0	0	0	1	12519	963	34	4		4	PRAMEF18	1	13474980	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	291349	13474980	235775641	4	5903											
AMPD1	270	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	115220103	115220103	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggcggggctcagcatgctgGtacttggcctccaccaggtc	14	13	1	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	115220103	G	C	115220103	4	2	60	1	0	0	0	0	0	1	0	0	585	1256	44	5	1014	5	AMPD1	1	115220103	Nonsense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	101745123	115220103	134030518	5	5904											
THADA	63892	broad.mit.edu;bcgsc.ca	37	chr2	43755040	43755040	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttagtacttcagtgagttTcacaaaaccagtataagcca	7	8	2	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	43755040	T	C	43755040	3	2	60	1	0	0	0	0	1	0	0	0	15944	1792	62	4	2577	4	THADA	2	43755040	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		43755040	199444333	6	5905											
ADD2	119	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	70910791	70910791	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgactcttctgcataggccCaaaggtgctcccggcccact	9	17	2	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	70910791	C	A	70910791	3	1	60	1	0	0	0	0	1	0	0	0	305	594	21	5	1328	5	ADD2	2	70910791	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	27155751	70910791	172288582	7	5906											
CCDC74A	90557	mdanderson.org	37	chr2	132285919	132285919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagggggaacacaggacGgtaagcccgccctgccacgc	14	15	1	0	rs2292302	bycluster	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	132285919	G	A	132285919	3	1	60	1	0	0	0	0	1	0	0	0	2874	1131	39	1		1	CCDC74A	2	132285919	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	61375128	132285919	110913454	8	5907											
SLC4A10	57282	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	162757484	162757484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggggaagcagagccccacGgaggacatagtggacctgaa	15	9	0	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	162757484	G	A	162757484	3	1	60	1	0	0	0	0	1	0	0	0	14749	1117	39	1	1536	1	SLC4A10	2	162757484	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	30471565	162757484	80441889	9	5908											
UGT1A9	54600	mdanderson.org	37	chr2	234580967	234580967	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgcaggagtttgtttaaAgacaaaaaattagtagaata	8	2	0	2	rs76359435	bycluster;alternate_allele	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	234580967	A	G	234580967	2	3	60	1	0	0	0	0	0	0	0	1	17058	69	3	2		2	UGT1A9	2	234580967	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	71823483	234580967	8618406	10	5909			1	63		3	3	68	N	C_AA_A	9.156303e-09
UGT1A9	54600	mdanderson.org	37	chr2	234581002	234581002	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agaatacttaaaggagagttCttttgatgcagtgtttctcg	10	5	2	3	rs76167146	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	234581002	C	G	234581002	3	3	60	1	0	0	0	0	1	0	0	0	17058	913	32	5	424	5	UGT1A9	2	234581002	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	35	234581002	8618371	11	5910			1	63		3	3	68	N	C_AA_A	9.156303e-09
UGT1A9	54600	mdanderson.org	37	chr2	234581034	234581035	+	Missense_Mutation	DNP	AA	AA	GC													tgtttctcgatccttttgatAactgtggcttaattgttgcc					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		GC	234581035	AA	GC	234581034	3	3	60	1	0	0	0	0	1	0	0	0	17058	362	13	4	456	4	UGT1A9	2	234581034	Missense_Mutation	DNP	AA	TCGA-KO-8410-01A-11D-2310-10	32	234581034	8618339	12	5911			1	63		3	3	68	N	C_AA_A	9.156303e-09
PASK	23178	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	242076636	242076636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaagctcagagggaaggtgGtaccgtccctggctcttcca	12	11	2	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	242076636	G	A	242076636	3	1	60	1	0	0	0	0	1	0	0	0	11551	1261	44	3	3099	3	PASK	2	242076636	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	7495602	242076636	1122737	13	5912											
ATP6V1A	523	broad.mit.edu	37	chr3	113522467	113522467	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agataaaatcactctggaggTagcaaaacttatcaaagatg	8	6	3	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	113522467	T	C	113522467	3	2	60	1	0	0	0	0	1	0	0	0	1181	1638	57	2	1578	2	ATP6V1A	3	113522467	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		113522467	84499963	14	5913											
KIAA1407	57577	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr3	113775289	113775289	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catccttttctttgagaaggAccttccctgaggcgccagga	10	12	1	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	113775289	A	C	113775289	3	2	60	1	0	0	0	0	1	0	0	0	8290	275	10	5	2853	5	KIAA1407	3	113775289	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	252822	113775289	84247141	15	5914											
LPHN3	23284	broad.mit.edu;mdanderson.org	37	chr4	62598528	62598528	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtgaacatttgtttgagTccgaccaccaatctggggcg	12	9	1	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	62598528	T	C	62598528	3	2	60	1	0	0	0	0	1	0	0	0	8989	1667	58	2	469	2	LPHN3	4	62598528	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		62598528	128555748	16	5915											
CXCL13	10563	broad.mit.edu	37	chr4	78528886	78528886	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtctattacacaagcttgAggtgtagatgtgtccaagag	12	6	1	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	78528886	A	G	78528886	3	3	60	1	0	0	0	0	1	0	0	0	4112	295	11	2	100	2	CXCL13	4	78528886	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	15930358	78528886	112625390	17	5916											
FRAS1	80144	broad.mit.edu;mdanderson.org	37	chr4	79403634	79403634	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcagctcagcacaaggagcCgaactgaccaaacccttcca	7	16	2	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	79403634	C	T	79403634	2	4	60	1	0	0	0	0	0	0	0	1	6093	639	23	1		1	FRAS1	4	79403634	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	874748	79403634	111750642	18	5917											
RAP1GDS1	5910	mdanderson.org	37	chr4	99341203	99341203	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagatgttatcagctggggTcacagaggcagttttgaaat	12	5	2	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	99341203	T	C	99341203	3	2	60	1	0	0	0	0	1	0	0	0	13131	1667	58	2	1253	2	RAP1GDS1	4	99341203	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	19937569	99341203	91813073	19	5918											
GUCY1A3	2982	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr4	156638325	156638325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctaggtggagaccattggCgatgcctattgtgtagctgg	15	7	1	1	rs112384014		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	156638325	C	T	156638325	2	4	60	1	0	0	0	0	0	0	0	1	6952	755	27	1		1	GUCY1A3	4	156638325	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	57297122	156638325	34515951	20	5919											
FRG1	2483	mdanderson.org	37	chr4	190876272	190876272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggcgttcagatgcaattgGaccaagagaacaatgggaac	13	7	1	2	rs202104107		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	190876272	G	A	190876272	3	1	60	1	0	0	0	0	1	0	0	0	6098	1174	41	3	416	3	FRG1	4	190876272	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	34237947	190876272	278004	21	5920			2	64		2	2	36	G		7.122589e-05
FRG1	2483	mdanderson.org	37	chr4	190876307	190876307	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaccagtctttcaaaatGtaagtgctgttattgtttat	9	5	2	0	rs200854715		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	190876307	G	A	190876307	5	1	60	1	0	0	0	0	0	0	1	0	6098	1391	48	4	451	4	FRG1	4	190876307	Splice_Site	SNP	G	TCGA-KO-8410-01A-11D-2310-10	35	190876307	277969	22	5921			2	64		2	2	36	G		7.122589e-05
LMBRD2	92255	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	36136550	36136550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatttccaccaagccatacCccaacaacaacacaagaaga	4	14	0	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	36136550	C	T	36136550	3	4	60	1	0	0	0	0	1	0	0	0	8907	623	22	3	1531	3	LMBRD2	5	36136550	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10		36136550	144778710	23	5922											
ITGA2	3673	broad.mit.edu;hgsc.bcm.edu	37	chr5	52376390	52376393	+	Frame_Shift_Del	DEL	TCCC	TCCC	-													ggcaactgtaatcatccacaTccctcagtataccaaagaaa					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	TCCC	TCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		-	52376393	TCCC	-	52376390	7	5	60	1	0	1	0	1	0	0	0	0	7936	1435	50	0	3076	0	ITGA2	5	52376390	Frame_Shift_Del	DEL	TCCC	TCGA-KO-8410-01A-11D-2310-10	16239840	52376390	128538870	24	5923	154	2									
ITGA2	3673	bcgsc.ca	37	chr5	52376391	52376394	+	Frame_Shift_Del	DEL	TCCC	TCCC	-													gcaactgtaatcatccacatCcctcagtataccaaagaaaa					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	TCCC	TCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		-	52376394	TCCC	-	52376391	7	5	60	1	0	1	0	1	0	0	0	0	7936	845	30	0	3077	0	ITGA2	5	52376391	Frame_Shift_Del	DEL	TCCC	TCGA-KO-8410-01A-11D-2310-10	1	52376391	128538869	25	5924	154	2									
ADAMTS19	171019	ucsc.edu	37	chr5	128990039	128990039	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctctcctgttggaaaagaAcagcctattcttctatcaga	7	10	4	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	128990039	A	G	128990039	2	3	60	1	0	0	0	0	0	0	0	1	264	40	2	2		2	ADAMTS19	5	128990039	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	76613648	128990039	51925221	26	5925											
NUPL2	11097	ucsc.edu	37	chr7	23221811	23221811	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggacggcagcaaccgcAgcagcagccttcaggtgact	14	12	1	1	rs145987368	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	23221811	A	G	23221811	3	3	60	1	0	0	0	0	1	0	0	0	10854	188	7	2	109	2	NUPL2	7	23221811	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10		23221811	135916852	27	5926											
ADAM9	8754	bcgsc.ca	37	chr8	38912013	38912013	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcacaggaatgtgaattggAcccttgctgcgaaggaagta	12	7	1	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	38912013	A	G	38912013	3	3	60	1	0	0	0	0	1	0	0	0	253	275	10	2	1366	2	ADAM9	8	38912013	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10		38912013	107452009	28	5927											
ADHFE1	137872	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	67357454	67357454	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattttctcttctccaagcTtcatggaagctattgagttt	6	8	3	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	67357454	T	G	67357454	3	3	60	1	0	0	0	0	1	0	0	0	314	1623	56	5	377	5	ADHFE1	8	67357454	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	28445441	67357454	79006568	29	5928											
FAM135B	51059	broad.mit.edu	37	chr8	139165349	139165349	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agacaagacaaggtcttcccTaaaagataaattgctattta	6	7	1	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	139165349	T	C	139165349	3	2	60	1	0	0	0	0	1	0	0	0	5492	1521	53	2	2883	2	FAM135B	8	139165349	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	71807895	139165349	7198673	30	5929											
ELAVL2	1993	broad.mit.edu	37	chr9	23762052	23762052	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactctatttcaccaatgcTcccaaagagactctttagtt	6	11	3	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	23762052	T	C	23762052	3	2	60	1	0	0	0	0	1	0	0	0	5089	1551	54	2	922	2	ELAVL2	9	23762052	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		23762052	117451379	31	5930											
OR13C2	392376	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	107367862	107367862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcttgggtgaccagaaagtCccttcagaaaaaattccacc	8	11	2	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	107367862	C	T	107367862	3	4	60	1	0	0	0	0	1	0	0	0	11013	855	30	3	912	3	OR13C2	9	107367862	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	83605810	107367862	33845569	32	5931											
SIRT1	23411	broad.mit.edu	37	chr10	69648852	69648852	+	Frame_Shift_Del	DEL	A	A	-													tgaaattactgcaagagtgcAaaaaaattatagttctaact					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		-	69648852	A	-	69648852	7	5	60	1	0	1	0	1	0	0	0	0	14435	131	5	0	770	0	SIRT1	10	69648852	Frame_Shift_Del	DEL	A	TCGA-KO-8410-01A-11D-2310-10		69648852	65885895	33	5932											
LZTS2	84445	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	102762597	102762597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccggacagagtcaccccCcagcccaagcagtgatgttg	10	15	1	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	102762597	C	T	102762597	3	4	60	1	0	0	0	0	1	0	0	0	9212	623	22	3	304	3	LZTS2	10	102762597	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	33113745	102762597	32772150	34	5933											
STK32C	282974	ucsc.edu	37	chr10	134121101	134121101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtcgtcaaacaccggCctccgcgcggtggccgccga	12	17	1	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	134121101	C	T	134121101	2	4	60	1	0	0	0	0	0	0	0	1	15399	738	26	3		3	STK32C	10	134121101	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	31358504	134121101	1413646	35	5934											
MUC6	4588	mdanderson.org	37	chr11	1016773	1016773	+	Missense_Mutation	SNP	G	G	T													caaggaggtggagaaaggtgGaacgtgagtgggaagtgtgg					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	1016773	G	T	1016773	3	4	60	1	0	0	0	0	1	0	0	0	10058	1174	41	5	1303	5	MUC6	11	1016773	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		1016773	133989743	36	5935	155	3									
MUC6	4588	mdanderson.org	37	chr11	1016777	1016777	+	Silent	SNP	G	G	A													gaggtggagaaaggtggaacGtgagtgggaagtgtggtctg					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	1016777	G	A	1016777	2	1	60	1	0	0	0	0	0	0	0	1	10058	1136	40	1		1	MUC6	11	1016777	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	4	1016777	133989739	37	5936	155	3									
MUC6	4588	mdanderson.org	37	chr11	1016787	1016787	+	Missense_Mutation	SNP	A	A	T													aaggtggaacgtgagtgggaAgtgtggtctgagggtgtgat					novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	1016787	A	T	1016787	3	4	60	1	0	0	0	0	1	0	0	0	10058	72	3	5	1317	5	MUC6	11	1016787	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	10	1016787	133989729	38	5937	155	3									
MUC6	4588	mdanderson.org	37	chr11	1017162	1017162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccttgatcgtggtcGgtggaggaatggtgcctgtt	17	7	0	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	1017162	G	A	1017162	3	1	60	1	0	0	0	0	1	0	0	0	10058	1116	39	1	1692	1	MUC6	11	1017162	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	375	1017162	133989354	39	5938											
OR4C3	256144	mdanderson.org	37	chr11	48346513	48346513	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaattagttctattactTatgtttctccttgtctttat	4	7	3	0	rs78206553	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	48346513	T	C	48346513	2	2	60	1	0	0	0	0	0	0	0	1	11129	1741	61	4		4	OR4C3	11	48346513	Silent	SNP	T	TCGA-KO-8410-01A-11D-2310-10	47329351	48346513	86660003	40	5939											
PRB2	653247	mdanderson.org	37	chr12	11546395	11546395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaggtttgttgcctccttgtGggggtggtccttgtggcttt	16	7	0	0	rs11054277		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	11546395	G	T	11546395	3	4	60	1	0	0	0	0	1	0	0	0	12532	1348	47	5	637	5	PRB2	12	11546395	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		11546395	122305500	41	5940											
ZDHHC17	23390	broad.mit.edu;mdanderson.org	37	chr12	77216266	77216266	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagaggcaaggcaagcaaaAggatatgacaatccgtcctt	10	9	0	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	77216266	A	G	77216266	2	3	60	1	0	0	0	0	0	0	0	1	17712	69	3	2		2	ZDHHC17	12	77216266	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	65669871	77216266	56635629	42	5941											
TDG	6996	mdanderson.org	37	chr12	104376608	104376608	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttatgtcagggctcagtgaGgtccagctgaaccatatgga	12	8	2	2	rs61937629	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	104376608	G	A	104376608	2	1	60	1	0	0	0	0	0	0	0	1	15829	991	35	4		4	TDG	12	104376608	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	27160342	104376608	29475287	43	5942											
MCF2L	23263	ucsc.edu;bcgsc.ca	37	chr13	113750740	113750740	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggaggccccgatgcgcTgcgcgtgaggagcggggacg	21	10	0	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	113750740	T	C	113750740	3	2	60	1	0	0	0	0	1	0	0	0	9456	1580	55	2	3507	2	MCF2L	13	113750740	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		113750740	1419138	44	5943											
LTBP2	4053	ucsc.edu	37	chr14	74995365	74995365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcggagctcgcgtaggtgTagccgtggccggcagggcag	19	10	0	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	74995365	T	C	74995365	3	2	60	1	0	0	0	0	1	0	0	0	9146	1638	57	2	3376	2	LTBP2	14	74995365	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		74995365	32354175	45	5944											
AHNAK2	113146	mdanderson.org	37	chr14	105412347	105412347	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaacgacggcatcttgaaCttgggcattttgaacttgct	10	10	1	2	rs55842266	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	105412347	C	T	105412347	2	4	60	1	0	0	0	0	0	0	0	1	415	564	20	4		4	AHNAK2	14	105412347	Silent	SNP	C	TCGA-KO-8410-01A-11D-2310-10	30416982	105412347	1937193	46	5945											
ATP10A	57194	bcgsc.ca	37	chr15	25928591	25928591	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcatggtagatgcagagaAgccacagaaaaactggaacc	10	8	1	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	25928591	A	G	25928591	3	3	60	1	0	0	0	0	1	0	0	0	1120	72	3	2	1185	2	ATP10A	15	25928591	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10		25928591	76602801	47	5946											
GOLGA8B	440270	ucsc.edu	37	chr15	34819940	34819940	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catctcaccaaggagctgcaGgactggctgtgcagtagggt	14	10	1	0	rs2615360	bycluster;byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	34819940	G	C	34819940	3	2	60	1	0	0	0	0	1	0	0	0	6620	991	35	5	110	5	GOLGA8B	15	34819940	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	8891349	34819940	67711452	48	5947											
GOLGA6D	653643	mdanderson.org	37	chr15	75586737	75586737	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtggagcctgcaccaggagTggccagggagggttctcccc	16	13	1	0	rs2118541		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	75586737	T	C	75586737	3	2	60	1	0	0	0	0	1	0	0	0	6616	1696	59	2	2073	2	GOLGA6D	15	75586737	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	40766797	75586737	26944655	49	5948											
ADAMTS7	11173	mdanderson.org	37	chr15	79058378	79058378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctatgggaggaggaaggAgagaagccaccccaacagtg	17	8	0	1	rs71402935	bycluster	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	79058378	A	G	79058378	3	3	60	1	0	0	0	0	1	0	0	0	271	304	11	2	1209	2	ADAMTS7	15	79058378	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	3471641	79058378	23473014	50	5949											
RHOT2	89941	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	721884	721884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgacggcgccctctcgcccGtggagctgcaaagccttttc	12	16	1	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	721884	G	T	721884	3	4	60	1	0	0	0	0	1	0	0	0	13437	1145	40	5	1029	5	RHOT2	16	721884	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10		721884	89632869	51	5950											
TPSB2	64499	mdanderson.org	37	chr16	1279704	1279704	+	Silent	SNP	A	A	G													ctgggggcctcctgacccccAacgatgcccactcgctgcag					rs62012906		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	1279704	A	G	1279704	2	3	60	1	0	0	0	0	0	0	0	1	16529	117	5	4		4	TPSB2	16	1279704	Silent	SNP	A	TCGA-KO-8410-01A-11D-2310-10	557820	1279704	89075049	52	5951	156	4									
TPSB2	64499	mdanderson.org	37	chr16	1279710	1279710	+	Silent	SNP	G	G	A													gcctcctgacccccaacgatGcccactcgctgcagggcctg					rs200630968	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	1279710	G	A	1279710	2	1	60	1	0	0	0	0	0	0	0	1	16529	1306	46	4		4	TPSB2	16	1279710	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	6	1279710	89075043	53	5952	156	4									
TPSB2	64499	mdanderson.org	37	chr16	1279714	1279714	+	Missense_Mutation	SNP	A	A	G													cctgacccccaacgatgcccActcgctgcagggcctggcct					rs192643610	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	1279714	A	G	1279714	3	3	60	1	0	0	0	0	1	0	0	0	16529	159	6	2	758	2	TPSB2	16	1279714	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	4	1279714	89075039	54	5953	156	4									
TPSB2	64499	mdanderson.org	37	chr16	1279717	1279717	+	Missense_Mutation	SNP	C	C	T													gacccccaacgatgcccactCgctgcagggcctggcctggg					rs201728868	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	1279717	C	T	1279717	3	4	60	1	0	0	0	0	1	0	0	0	16529	884	31	1	761	1	TPSB2	16	1279717	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	3	1279717	89075036	55	5954	156	4									
ZNF668	79759	ucsc.edu	37	chr16	31072996	31072996	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggggcacacccgcggccTcactgcttcgatgggtccgc	14	16	1	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	31072996	T	C	31072996	3	2	60	1	0	0	0	0	1	0	0	0	18180	1551	54	2	610	2	ZNF668	16	31072996	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	29793279	31072996	59281757	56	5955											
COPS3	8533	ucsc.edu	37	chr17	17184462	17184462	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttgagctgagagctgTcggacactgttcacgaactg	11	10	1	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	17184462	T	C	17184462	2	2	60	1	0	0	0	0	0	0	0	1	3763	1654	58	2		2	COPS3	17	17184462	Silent	SNP	T	TCGA-KO-8410-01A-11D-2310-10		17184462	64010748	57	5956											
MUC16	94025	mdanderson.org	37	chr19	8999414	8999414	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacatagagactgtccctGtccagggtgtaggggcccag	14	10	0	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	8999414	G	A	8999414	2	1	60	1	0	0	0	0	0	0	0	1	10051	1368	48	4		4	MUC16	19	8999414	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10		8999414	50129569	58	5957											
ZNF575	284346	ucsc.edu	37	chr19	44039421	44039421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcctacccctccaagctggCagcccaccgcctcacgcaca	6	22	1	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	44039421	C	T	44039421	3	4	60	1	0	0	0	0	1	0	0	0	18112	710	25	4	326	4	ZNF575	19	44039421	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	35040007	44039421	15089562	59	5958											
ZNF224	7767	broad.mit.edu	37	chr19	44611929	44611929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccacacaggagagagacCatacaattgtaaggaatgtg	12	7	0	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	44611929	C	T	44611929	3	4	60	1	0	0	0	0	1	0	0	0	17883	594	21	4	1630	4	ZNF224	19	44611929	Missense_Mutation	SNP	C	TCGA-KO-8410-01A-11D-2310-10	572508	44611929	14517054	60	5959											
ZNF285	26974	mdanderson.org	37	chr19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgaagaacagagctatacGcaaaatcctttccacacaca	6	11	0	3	rs150792548	byfrequency	TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	44891010	G	C	44891010	3	2	60	1	0	0	0	0	1	0	0	0	17927	1087	38	5	379	5	ZNF285	19	44891010	Missense_Mutation	SNP	G	TCGA-KO-8410-01A-11D-2310-10	279081	44891010	14237973	61	5960											
VN1R4	317703	mdanderson.org	37	chr19	53770838	53770838	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtaaaaggagagataatgGagaagaacagagaagctccc	12	6	0	4	rs201450916		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	53770838	G	A	53770838	2	1	60	1	0	0	0	0	0	0	0	1	17286	1161	41	3		3	VN1R4	19	53770838	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	8879828	53770838	5358145	62	5961											
C20orf152	140894	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr20	34611599	34611599	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgagcctgggaaatgagTtgatacggataaggaaggaa	15	3	0	4	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	34611599	T	A	34611599	3	1	60	1	0	0	0	0	1	0	0	0	2112	1722	60	5	1375	5	C20orf152	20	34611599	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10		34611599	28413921	63	5962											
SERINC3	10955	broad.mit.edu;mdanderson.org	37	chr20	43129733	43129733	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtaccagctggtcagggTcatcatgatgtacaaggaag	12	9	3	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	43129733	T	C	43129733	3	2	60	1	0	0	0	0	1	0	0	0	14178	1667	58	2	165	2	SERINC3	20	43129733	Missense_Mutation	SNP	T	TCGA-KO-8410-01A-11D-2310-10	8518134	43129733	19895787	64	5963											
DSCAM	1826	broad.mit.edu;mdanderson.org	37	chr21	41384994	41384994	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taagattttgcgtaaggattGtttcctttcaaatggccccg	9	8	1	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	41384994	G	A	41384994	2	1	60	1	0	0	0	0	0	0	0	1	4805	1368	48	4		4	DSCAM	21	41384994	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10		41384994	6744901	65	5964											
MTMR3	8897	ucsc.edu	37	chr22	30418651	30418651	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgctatgcgtgcgacagTgccttctggcttgccagcag	12	13	1	0	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		C	30418651	T	C	30418651	2	2	60	1	0	0	0	0	0	0	0	1	10023	1693	59	2		2	MTMR3	22	30418651	Silent	SNP	T	TCGA-KO-8410-01A-11D-2310-10		30418651	20885915	66	5965											
BRWD3	254065	broad.mit.edu	37	chrX	79989615	79989615	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accgtttctgattttctcttAccgtatgtgactctaattca	5	10	4	2	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		G	79989615	A	G	79989615	5	3	60	1	0	0	0	0	0	0	1	0	1534	405	14	2	4444	2	BRWD3	23	79989615	Splice_Site	SNP	A	TCGA-KO-8410-01A-11D-2310-10		79989615	75280945	67	5966											
CXorf48	54967	broad.mit.edu;mdanderson.org	37	chrX	134294442	134294442	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actctggttcctgagtctgaGggtccagcaccataaagatg	11	10	2	3	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		A	134294442	G	A	134294442	2	1	60	1	0	0	0	0	0	0	0	1	4142	987	35	4		4	CXorf48	23	134294442	Silent	SNP	G	TCGA-KO-8410-01A-11D-2310-10	54304827	134294442	20976118	68	5967											
BRCC3	79184	broad.mit.edu	37	chrX	154344462	154344462	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcgtataggaggatccacAggtagagaccctcttcactc	10	11	2	1	novel		TCGA-KO-8410-01A-11D-2310-10	TCGA-KO-8410-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	798bd17b-69b7-40d7-92ff-7c2389edcccf	01229abb-7ade-4ab4-be30-3406270b8e6d		T	154344462	A	T	154344462	3	4	60	1	0	0	0	0	1	0	0	0	1508	202	7	5	788	5	BRCC3	23	154344462	Missense_Mutation	SNP	A	TCGA-KO-8410-01A-11D-2310-10	20050020	154344462	926098	69	5968											
TTC39A	22996	ucsc.edu	37	chr1	51761772	51761772	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaataattccacttcgtcgTccccgaacggcttgtggtcc	9	13	0	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	51761772	T	C	51761772	3	2	61	1	0	0	0	0	1	0	0	0	16813	1667	58	2	633	2	TTC39A	1	51761772	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		51761772	197488849	1	5969											
USP24	23358	ucsc.edu	37	chr1	55595207	55595207	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttggcacagcttctggccAtgtcatcatcagctgttggc	10	11	4	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	55595207	A	G	55595207	3	3	61	1	0	0	0	0	1	0	0	0	17161	217	8	4	4432	4	USP24	1	55595207	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	3833435	55595207	193655414	2	5970											
WLS	79971	hgsc.bcm.edu;mdanderson.org	37	chr1	68697908	68697908	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaccagaaaggcgatgatTtggaacacgagcagaatccc	10	12	0	3	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	68697908	T	C	68697908	2	2	61	1	0	0	0	0	0	0	0	1	17482	1838	64	4		4	WLS	1	68697908	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	13102701	68697908	180552713	3	5971											
WNT2B	7482	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	113058941	113058941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtgacaacatccactacGgtgtccgttttgccaaggcc	10	13	0	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	113058941	G	A	113058941	3	1	61	1	0	0	0	0	1	0	0	0	17493	1116	39	1	726	1	WNT2B	1	113058941	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	44361033	113058941	136191680	4	5972											
SLC27A3	11000	mdanderson.org	37	chr1	153748161	153748161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgacccggaaggtcccgaggGgggctgcagcctggcctggc	18	14	0	0	rs34527123	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	153748161	G	C	153748161	3	2	61	1	0	0	0	0	1	0	0	0	14625	1232	43	5	331	5	SLC27A3	1	153748161	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	40689220	153748161	95502460	5	5973											
HMCN1	83872	broad.mit.edu;bcgsc.ca	37	chr1	185891568	185891568	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcagtactattgatttcCgagctggcttttctcgaaag	9	10	2	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	185891568	C	T	185891568	4	4	61	1	0	0	0	0	0	1	0	0	7278	644	23	1	984	1	HMCN1	1	185891568	Nonsense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10	32143407	185891568	63359053	6	5974											
FAM179A	165186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	29274925	29274925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcccctgacagcaagaCaactggcagctcataccctt	10	14	1	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	29274925	C	T	29274925	3	4	61	1	0	0	0	0	1	0	0	0	5548	478	17	4	3100	4	FAM179A	2	29274925	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		29274925	213924448	7	5975											
CTDSPL	10217	ucsc.edu;mdanderson.org	37	chr3	38009346	38009346	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgctgattttattgttccGgttgaaatcgatggaactat	9	5	0	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	38009346	G	A	38009346	2	1	61	1	0	0	0	0	0	0	0	1	4036	1103	39	1		1	CTDSPL	3	38009346	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		38009346	160013084	8	5976											
NKTR	4820	broad.mit.edu	37	chr3	42660605	42660605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaactttatgattcagggtgGggacttcagtgaaggtagag	14	4	2	3	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	42660605	G	A	42660605	3	1	61	1	0	0	0	0	1	0	0	0	10527	1232	43	3	237	3	NKTR	3	42660605	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	4651259	42660605	155361825	9	5977											
BSN	8927	broad.mit.edu	37	chr3	49689196	49689196	+	Frame_Shift_Del	DEL	A	A	-													cagcatgcggcctttgctgcAggcccagggcctggccccaa					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		-	49689196	A	-	49689196	7	5	61	1	0	1	0	1	0	0	0	0	1538	188	7	0	2225	0	BSN	3	49689196	Frame_Shift_Del	DEL	A	TCGA-KO-8411-01A-11D-2310-10	7028591	49689196	148333234	10	5978											
RAD54L2	23132	broad.mit.edu	37	chr3	51624506	51624508	+	In_Frame_Del	DEL	GAG	GAG	-													tggagctggaggatgcggaaGaggaggaggaggaggaggag					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		-	51624508	GAG	-	51624506	7	5	61	1	0	1	0	1	0	0	0	0	13086	943	33	0	72	0	RAD54L2	3	51624506	In_Frame_Del	DEL	GAG	TCGA-KO-8411-01A-11D-2310-10	1935310	51624506	146397924	11	5979											
OR5H1	26341	mdanderson.org	37	chr3	97851659	97851659	+	Missense_Mutation	SNP	A	A	T													taatatatctcatcaccatcAtggggaatcttggtctgatt					rs199787047	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	97851659	A	T	97851659	3	4	61	1	0	0	0	0	1	0	0	0	11238	217	8	5	120	5	OR5H1	3	97851659	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	46227153	97851659	100170771	12	5980	157	2									
OR5H1	26341	mdanderson.org	37	chr3	97851661	97851661	+	Missense_Mutation	SNP	G	G	T													atatatctcatcaccatcatGgggaatcttggtctgattgc					rs200721525	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	97851661	G	T	97851661	3	4	61	1	0	0	0	0	1	0	0	0	11238	1348	47	5	122	5	OR5H1	3	97851661	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	2	97851661	100170769	13	5981	157	2									
COL6A5	256076	hgsc.bcm.edu	37	chr3	130095482	130095482	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggcttcgaaagcccTgcagaaagacggggtgaaaa	15	7	0	4	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	130095482	T	A	130095482	3	1	61	1	0	0	0	0	1	0	0	0	3731	1580	55	5	476	5	COL6A5	3	130095482	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	32243821	130095482	67926948	14	5982											
FGFRL1	53834	mdanderson.org	37	chr4	1019078	1019078	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acacacacacacacacactcTcacacacactcacacgtgga	3	18	2	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	1019078	T	A	1019078	2	1	61	1	0	0	0	0	0	0	0	1	5918	1538	54	5		5	FGFRL1	4	1019078	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10		1019078	190135198	15	5983											
DSPP	1834	broad.mit.edu	37	chr4	88535571	88535571	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagtgacagcagtgacagtgAcagcagtgatagcagtgaca	13	7	0	5	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	88535571	A	G	88535571	3	3	61	1	0	0	0	0	1	0	0	0	4819	275	10	2	1771	2	DSPP	4	88535571	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	87516493	88535571	102618705	16	5984											
FAT1	2195	broad.mit.edu	37	chr4	187541479	187541479	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccactttaacaacggcGtagtagggaaggttgacaaa	12	7	0	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	187541479	G	A	187541479	2	1	61	1	0	0	0	0	0	0	0	1	5738	1140	40	1		1	FAT1	4	187541479	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10	99005908	187541479	3612797	17	5985											
FRG1	2483	mdanderson.org	37	chr4	190876307	190876307	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaccagtctttcaaaatGtaagtgctgttattgtttat	9	5	2	0	rs200854715		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	190876307	G	A	190876307	5	1	61	1	0	0	0	0	0	0	1	0	6098	1391	48	4	451	4	FRG1	4	190876307	Splice_Site	SNP	G	TCGA-KO-8411-01A-11D-2310-10	3334828	190876307	277969	18	5986											
OXCT1	5019	bcgsc.ca	37	chr5	41794806	41794806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcattgcaaatgattcatcgCtggagaaaaaagaggctcct	9	8	2	3	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	41794806	C	T	41794806	3	4	61	1	0	0	0	0	1	0	0	0	11408	797	28	4	441	4	OXCT1	5	41794806	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		41794806	139120454	19	5987											
SEMA6A	57556	mdanderson.org	37	chr5	115837967	115837967	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggatgtccagcctgtgccTctgtgtggtgttccgtcctg	13	12	1	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	115837967	T	C	115837967	3	2	61	1	0	0	0	0	1	0	0	0	14136	1550	54	2	3003	2	SEMA6A	5	115837967	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	74043161	115837967	65077293	20	5988											
SLC26A8	116369	ucsc.edu	37	chr6	35930387	35930387	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgttgctcagaataataccAgccagcacagcctgtgggga	11	11	1	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	35930387	A	G	35930387	2	3	61	1	0	0	0	0	0	0	0	1	14621	175	7	2		2	SLC26A8	6	35930387	Silent	SNP	A	TCGA-KO-8411-01A-11D-2310-10		35930387	135184680	21	5989											
PKD1L1	168507	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chr7	47968829	47968829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactggtggtaggcagtcacCgccattgcctcagacatgtt	11	11	2	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	47968829	C	T	47968829	2	4	61	1	0	0	0	0	0	0	0	1	12044	639	23	1		1	PKD1L1	7	47968829	Silent	SNP	C	TCGA-KO-8411-01A-11D-2310-10		47968829	111169834	22	5990											
POM121	9883	broad.mit.edu	37	chr7	72413476	72413477	+	Frame_Shift_Ins	INS	-	-	C													tgaggggcagccaccgggggINSccgccaagccggcccttgcc					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	72413477	-	C	72413476	7	5	61	1	0	1	1	0	0	0	0	0	12319	1203	42	0	2187	0	POM121	7	72413476	Frame_Shift_Ins	INS	-	TCGA-KO-8411-01A-11D-2310-10	24444647	72413476	86725187	23	5991											
GTF2IRD2	84163	mdanderson.org	37	chr7	74212075	74212075	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacgcgaaaagatctcgttGccagattttgtacccgtcat	8	11	2	2	rs71554701		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	74212075	G	T	74212075	2	4	61	1	0	0	0	0	0	0	0	1	6927	1306	46	5		5	GTF2IRD2	7	74212075	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10	1798599	74212075	84926588	24	5992											
AASS	10157	mdanderson.org	37	chr7	121773650	121773650	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgcctttgatgtgcttgGgagctagcggggcccttctc	14	10	1	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	121773650	G	C	121773650	3	2	61	1	0	0	0	0	1	0	0	0	24	1232	43	5	2741	5	AASS	7	121773650	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	47561575	121773650	37365013	25	5993											
GGH	8836	broad.mit.edu;bcgsc.ca	37	chr8	63942762	63942762	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtatttcatagtctttcTctgtaagatccagcctgaaa	6	8	3	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	63942762	T	C	63942762	3	2	61	1	0	0	0	0	1	0	0	0	6413	1551	54	2	745	2	GGH	8	63942762	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		63942762	82421260	26	5994											
PDP1	54704	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr8	94934838	94934838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaatgcagtggagagcggccGggcactgctacccattctcc	12	13	1	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	94934838	G	A	94934838	3	1	61	1	0	0	0	0	1	0	0	0	11764	1116	39	1	734	1	PDP1	8	94934838	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	30992076	94934838	51429184	27	5995											
TRPS1	7227	broad.mit.edu	37	chr8	116616283	116616283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaggagtacatctacgTcaggggtggtgaatgaacac	14	6	2	3	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	116616283	T	C	116616283	3	2	61	1	0	0	0	0	1	0	0	0	16698	1667	58	2	1987	2	TRPS1	8	116616283	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	21681445	116616283	29747739	28	5996											
LCN1	3933	mdanderson.org	37	chr9	138413982	138413982	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgacacccatgaccctcacGaccctggaagggggcaacct	11	15	1	2	rs150536266	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	138413982	G	A	138413982	2	1	61	1	0	0	0	0	0	0	0	1	8742	1045	37	1		1	LCN1	9	138413982	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		138413982	2799449	29	5997											
FAM21C	253725	mdanderson.org	37	chr10	46248649	46248649	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgacctcttcacggaagccTcccaggatcggcaagctgga	12	13	2	1	rs2610452	bycluster	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	46248649	T	C	46248649	3	2	61	1	0	0	0	0	1	0	0	0	5587	1551	54	2	1194	2	FAM21C	10	46248649	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		46248649	89286098	30	5998											
SLIT1	6585	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	98819913	98819913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgatgccgttcagctccaggCgtctgcggggagaaaagaga	15	9	2	3	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	98819913	C	T	98819913	3	4	61	1	0	0	0	0	1	0	0	0	14837	768	27	1	3772	1	SLIT1	10	98819913	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10	52571264	98819913	36714834	31	5999											
NEURL	9148	broad.mit.edu	37	chr10	105331354	105331354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgactcgctgcccaagtacGcctgccccgacctggtgtcc	10	18	0	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	105331354	G	A	105331354	3	1	61	1	0	0	0	0	1	0	0	0	10424	1087	38	1	434	1	NEURL	10	105331354	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	6511441	105331354	30203393	32	6000											
CTBP2	1488	bcgsc.ca	37	chr10	126715160	126715161	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG													ggatgctgtctgcagaggagINSccgcagcgcccagagaagcc					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		GCCGCAGGCTGGGGCTGCAGG	126715161	-	GCCGCAGGCTGGGGCTGCAGG	126715160	7	5	61	1	0	1	1	0	0	0	0	0	4029	971	34	0	1824	0	CTBP2	10	126715160	In_Frame_Ins	INS	-	TCGA-KO-8411-01A-11D-2310-10	21383806	126715160	8819587	33	6001											
MUC6	4588	mdanderson.org	37	chr11	1017679	1017679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgttggtggtagaagttgAggtggcttcagcatggtgtg	18	3	1	2	rs111294390	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	1017679	A	G	1017679	3	3	61	1	0	0	0	0	1	0	0	0	10058	304	11	2	2209	2	MUC6	11	1017679	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10		1017679	133988837	34	6002											
MUC6	4588	mdanderson.org	37	chr11	1018271	1018271	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgagctgtgggcttgGctggtcccactggtggtcgg	17	9	0	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	1018271	G	C	1018271	3	2	61	1	0	0	0	0	1	0	0	0	10058	1194	42	5	2801	5	MUC6	11	1018271	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	592	1018271	133988245	35	6003											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092845	1092845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccccaacacccaccggcaCacagaccccaacaacgacac	4	21	0	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	1092845	C	T	1092845	3	4	61	1	0	0	0	0	1	0	0	0	10053	478	17	4	4782	4	MUC2	11	1092845	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10	74574	1092845	133913671	36	6004											
MYBPC3	4607	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr11	47356593	47356593	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcacaaaggggcactcacGcaggatctcctgcactgtca	10	14	3	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	47356593	G	A	47356593	4	1	61	1	0	0	0	0	0	1	0	0	10091	1101	38	1	951	1	MYBPC3	11	47356593	Nonsense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	46263748	47356593	87649923	37	6005											
KRTAP5-10	387273	mdanderson.org	37	chr11	71276725	71276725	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctccggctgtgggggctAtggctctggctgtgggggct	20	9	1	0	rs201471375	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	71276725	A	G	71276725	3	3	61	1	0	0	0	0	1	0	0	0	8621	449	16	4	94	4	KRTAP5-10	11	71276725	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	23920132	71276725	63729791	38	6006											
ARHGEF17	9828	mdanderson.org	37	chr11	73020389	73020389	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcctgctcctcctcctccAtcgccgcctcctatcctgtc	4	23	0	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	73020389	A	T	73020389	3	4	61	1	0	0	0	0	1	0	0	0	902	217	8	5	708	5	ARHGEF17	11	73020389	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	1743664	73020389	61986127	39	6007											
ATN1	1822	mdanderson.org	37	chr12	7045906	7045906	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaacagcagcagcagcaGcagcagcagcagcagcagca	12	14	0	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	7045906	G	A	7045906	2	1	61	1	0	0	0	0	0	0	0	1	1115	962	34	4		4	ATN1	12	7045906	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		7045906	126805989	40	6008											
CLEC9A	283420	hgsc.bcm.edu;mdanderson.org	37	chr12	10205356	10205356	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagacacttaccagaaatgtCtgtcttccaacaaatgttca	5	11	3	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	10205356	C	T	10205356	2	4	61	1	0	0	0	0	0	0	0	1	3551	912	32	4		4	CLEC9A	12	10205356	Silent	SNP	C	TCGA-KO-8411-01A-11D-2310-10	3159450	10205356	123646539	41	6009											
EPS8	2059	broad.mit.edu;hgsc.bcm.edu	37	chr12	15784389	15784392	+	Frame_Shift_Del	DEL	TTGT	TTGT	-													aacttacggtccaccggaagTtgtttgtgtctctggctgtc					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		-	15784392	TTGT	-	15784389	7	5	61	1	0	1	0	1	0	0	0	0	5233	1722	60	0	453	0	EPS8	12	15784389	Frame_Shift_Del	DEL	TTGT	TCGA-KO-8411-01A-11D-2310-10	5579033	15784389	118067506	42	6010	158	2									
EPS8	2059	bcgsc.ca	37	chr12	15784390	15784393	+	Frame_Shift_Del	DEL	TTGT	TTGT	-													acttacggtccaccggaagtTgtttgtgtctctggctgtct					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		-	15784393	TTGT	-	15784390	7	5	61	1	0	1	0	1	0	0	0	0	5233	1812	63	0	454	0	EPS8	12	15784390	Frame_Shift_Del	DEL	TTGT	TCGA-KO-8411-01A-11D-2310-10	1	15784390	118067505	43	6011	158	2									
SLC4A8	9498	broad.mit.edu	37	chr12	51868965	51868966	+	Frame_Shift_Ins	INS	-	-	G													agcaccttaaagacgtttaaINSgacgagccgttatttcccaa					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	51868966	-	G	51868965	7	5	61	1	0	1	1	0	0	0	0	0	14757	72	3	0	2209	0	SLC4A8	12	51868965	Frame_Shift_Ins	INS	-	TCGA-KO-8411-01A-11D-2310-10	36084575	51868965	81982930	44	6012											
MARCH9	92979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	58152575	58152575	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacgctcttgcctcagcgCtgcggttatacaatcttgca	10	13	3	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	58152575	C	T	58152575	2	4	61	1	0	0	0	0	0	0	0	1	9385	784	28	4		4	MARCH9	12	58152575	Silent	SNP	C	TCGA-KO-8411-01A-11D-2310-10	6283610	58152575	75699320	45	6013											
PPFIA2	8499	broad.mit.edu	37	chr12	81675147	81675147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaacttctgtactgaggtAaccccaagctgggaagccat	10	10	1	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	81675147	A	G	81675147	3	3	61	1	0	0	0	0	1	0	0	0	12390	372	13	4	696	4	PPFIA2	12	81675147	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	23522572	81675147	52176748	46	6014											
RILPL1	353116	broad.mit.edu	37	chr12	123957223	123957223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttatctcgggagaagaaGctaaacctttggaagggaaa	11	6	2	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	123957223	G	T	123957223	3	4	61	1	0	0	0	0	1	0	0	0	13454	962	34	5	141	5	RILPL1	12	123957223	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	42282076	123957223	9894672	47	6015											
XPO4	64328	broad.mit.edu	37	chr13	21373326	21373326	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccaatactgctgtttgGtttctgtgtccatatgtgca	9	9	1	0	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	21373326	G	A	21373326	3	1	61	1	0	0	0	0	1	0	0	0	17552	1261	44	3	1187	3	XPO4	13	21373326	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10		21373326	93796552	48	6016											
CDH24	64403	broad.mit.edu	37	chr14	23522739	23522739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggagtccaggtcagccgCggagatctggcctaccaggg	17	11	2	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	23522739	C	T	23522739	3	4	61	1	0	0	0	0	1	0	0	0	3138	768	27	1	1295	1	CDH24	14	23522739	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		23522739	83826801	49	6017											
EXOC5	10640	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr14	57675499	57675499	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgcagagtatcaaaaagaTgtaataccattggaatctga	8	6	2	3	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	57675499	T	C	57675499	3	2	61	1	0	0	0	0	1	0	0	0	5346	1464	51	4	175	4	EXOC5	14	57675499	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10	34152760	57675499	49674041	50	6018											
FAM174B	400451	mdanderson.org	37	chr15	93198687	93198688	+	Missense_Mutation	DNP	GA	GA	CC													cgccactgctgttggagctgGagctgccgctgccgcccgcc					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		CC	93198688	GA	CC	93198687	3	2	61	1	0	0	0	0	1	0	0	0	5539	1174	41	5	288	5	FAM174B	15	93198687	Missense_Mutation	DNP	GA	TCGA-KO-8411-01A-11D-2310-10		93198687	9332705	51	6019											
CFDP1	10428	broad.mit.edu	37	chr16	75448501	75448501	+	Frame_Shift_Del	DEL	T	T	-													tggaatgctctgggcctttcTttttttcccttgggttttct					novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		-	75448501	T	-	75448501	7	5	61	1	0	1	0	1	0	0	0	0	3311	1617	56	0	766	0	CFDP1	16	75448501	Frame_Shift_Del	DEL	T	TCGA-KO-8411-01A-11D-2310-10		75448501	14906252	52	6020											
SYCE1L	100130958	mdanderson.org	37	chr16	77246218	77246218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcgggaggtggagcggcGgctgcactcgccgcctgagg	20	12	0	1	rs13331769		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	77246218	G	A	77246218	3	1	61	1	0	0	0	0	1	0	0	0	15529	1116	39	1	567	1	SYCE1L	16	77246218	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	1797717	77246218	13108535	53	6021											
BPTF	2186	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr17	65960371	65960371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagaattggtaccatgggCgctgcgttggcatcttgcaa	13	9	2	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	65960371	C	T	65960371	3	4	61	1	0	0	0	0	1	0	0	0	1503	768	27	1	8789	1	BPTF	17	65960371	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		65960371	15234839	54	6022											
ONECUT2	9480	hgsc.bcm.edu;ucsc.edu	37	chr18	55143925	55143925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagcacagggggctcctcGtccacctccagcacgtgtac	11	16	0	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	55143925	G	A	55143925	2	1	61	1	0	0	0	0	0	0	0	1	10948	1132	40	1		1	ONECUT2	18	55143925	Silent	SNP	G	TCGA-KO-8411-01A-11D-2310-10		55143925	22933323	55	6023											
POLRMT	5442	mdanderson.org	37	chr19	622336	622336	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctcgggcgcccccagcTcctcccagtactgccgcggc	13	20	0	0	rs2238549	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	622336	T	G	622336	3	3	61	1	0	0	0	0	1	0	0	0	12318	1551	54	5	2080	5	POLRMT	19	622336	Missense_Mutation	SNP	T	TCGA-KO-8411-01A-11D-2310-10		622336	58506647	56	6024											
ADAMTSL5	339366	bcgsc.ca	37	chr19	1506881	1506881	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtagcgctcccgagggAgccagaactcaaactcgatg	13	12	1	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	1506881	A	G	1506881	3	3	61	1	0	0	0	0	1	0	0	0	278	304	11	2	528	2	ADAMTSL5	19	1506881	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	884545	1506881	57622102	57	6025											
MUC16	94025	mdanderson.org	37	chr19	8999421	8999421	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agagactgtccctgtccaggGtgtaggggcccagctcagtg	15	11	1	1	rs75266616		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	8999421	G	C	8999421	3	2	61	1	0	0	0	0	1	0	0	0	10051	1261	44	5	2885	5	MUC16	19	8999421	Missense_Mutation	SNP	G	TCGA-KO-8411-01A-11D-2310-10	7492540	8999421	50129562	58	6026											
ZC3H4	23211	mdanderson.org	37	chr19	47575243	47575243	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcatgtctgcgtgcatgtcTgcgtgcatgtcagggtgcat	15	9	3	0	rs392366		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		A	47575243	T	A	47575243	2	1	61	1	0	0	0	0	0	0	0	1	17675	1567	55	5		5	ZC3H4	19	47575243	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	38575822	47575243	11553740	59	6027											
ZNF836	162962	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	52660555	52660555	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctacatcctcttgactAtgttgacctcttttaccatt	3	11	3	2	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	52660555	A	G	52660555	2	3	61	1	0	0	0	0	0	0	0	1	18290	446	16	4		4	ZNF836	19	52660555	Silent	SNP	A	TCGA-KO-8411-01A-11D-2310-10	5085312	52660555	6468428	60	6028											
VN1R4	317703	mdanderson.org	37	chr19	53770825	53770825	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcacccagtgcagtaaaAggagagataatggagaagaa	12	7	0	3	rs141780644	byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		G	53770825	A	G	53770825	3	3	61	1	0	0	0	0	1	0	0	0	17286	72	3	2	814	2	VN1R4	19	53770825	Missense_Mutation	SNP	A	TCGA-KO-8411-01A-11D-2310-10	1110270	53770825	5358158	61	6029											
ADAMTS1	9510	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr21	28216883	28216883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagccgagctgggatcgcCattcacggtgccggagtaga	16	11	1	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	28216883	C	T	28216883	3	4	61	1	0	0	0	0	1	0	0	0	255	594	21	4	2548	4	ADAMTS1	21	28216883	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		28216883	19913012	62	6030											
KRTAP10-10	353333	mdanderson.org	37	chr21	46057625	46057625	+	Silent	SNP	T	T	C													cagcaggcctgctgtgtgccTgtctgctgtgtgcccgtctg					rs55677560	bycluster	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	46057625	T	C	46057625	2	2	61	1	0	0	0	0	0	0	0	1	8567	1567	55	2		2	KRTAP10-10	21	46057625	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	17840742	46057625	2072270	63	6031	159	2									
KRTAP10-10	353333	mdanderson.org	37	chr21	46057634	46057634	+	Silent	SNP	T	T	C													tgctgtgtgcctgtctgctgTgtgcccgtctgctgcgtgcc					rs61029972	bycluster;byfrequency	TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		C	46057634	T	C	46057634	2	2	61	1	0	0	0	0	0	0	0	1	8567	1702	59	2		2	KRTAP10-10	21	46057634	Silent	SNP	T	TCGA-KO-8411-01A-11D-2310-10	9	46057634	2072261	64	6032	159	2									
CXorf36	79742	bcgsc.ca	37	chrX	45010908	45010908	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	accagcccttcagaacttatCgttatatttgcaatctgggt	7	10	2	1	novel		TCGA-KO-8411-01A-11D-2310-10	TCGA-KO-8411-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9dfcbabf-2bc0-43a2-bdde-d0b2aaca3f6b	7f8f088d-0cab-4301-8a5d-9e780d18439b		T	45010908	C	T	45010908	3	4	61	1	0	0	0	0	1	0	0	0	4137	884	31	1	14	1	CXorf36	23	45010908	Missense_Mutation	SNP	C	TCGA-KO-8411-01A-11D-2310-10		45010908	110259652	65	6033											
NBPF10	100132406	ucsc.edu	37	chr1	145302775	145302775	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaggccctcctcactccgTatgagccggacaagtcccag	9	17	1	1	rs71241610		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	145302775	T	G	145302775	3	3	62	1	0	0	0	0	1	0	0	0	10271	1638	57	5	1243	5	NBPF10	1	145302775	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10		145302775	103947846	1	6034											
FAM163A	148753	broad.mit.edu	37	chr1	179782953	179782953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggaaccgaggttgcagacGaggaggaggagcgggagcac	20	8	0	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	179782953	G	A	179782953	3	1	62	1	0	0	0	0	1	0	0	0	5519	1059	37	1	139	1	FAM163A	1	179782953	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	34480178	179782953	69467668	2	6035											
SMEK2	57223	bcgsc.ca	37	chr2	55842601	55842601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgcctgttgtttctgatAtgcagtatttggatttatct	8	6	2	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	55842601	A	G	55842601	3	3	62	1	0	0	0	0	1	0	0	0	14892	449	16	4	2429	4	SMEK2	2	55842601	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		55842601	187356772	3	6036											
ATG9A	79065	bcgsc.ca	37	chr2	220085850	220085850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccccatgcagggcagtggTctcaggagctccaggccggg	16	14	1	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	220085850	T	C	220085850	3	2	62	1	0	0	0	0	1	0	0	0	1106	1667	58	2	211	2	ATG9A	2	220085850	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	164243249	220085850	23113523	4	6037											
PRR21	643905	mdanderson.org	37	chr2	240981515	240981515	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggccgtgggtgaagaggcAtggacgaagggccgtgggtg	22	6	0	2	rs59139800	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	240981515	A	G	240981515	2	3	62	1	0	0	0	0	0	0	0	1	12681	214	8	4		4	PRR21	2	240981515	Silent	SNP	A	TCGA-KO-8413-01A-11D-2310-10	20895665	240981515	2217858	5	6038											
COL8A1	1295	broad.mit.edu;mdanderson.org	37	chr3	99514923	99514923	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagaacaggctgcaggactGtatgccgggcagtatgtcca	13	10	1	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	99514923	G	A	99514923	2	1	62	1	0	0	0	0	0	0	0	1	3734	1364	48	4		4	COL8A1	3	99514923	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10		99514923	98507507	6	6039											
MUC4	4585	mdanderson.org	37	chr3	195505763	195505763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgtggatactgaggaaaGgctggtgacaggaagagggg	18	5	0	3	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	195505763	G	A	195505763	3	1	62	1	0	0	0	0	1	0	0	0	10056	1000	35	4		4	MUC4	3	195505763	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	95990840	195505763	2516667	7	6040			1	65		4	4	6903	N	T_G_C	2.724578e-07
MUC4	4585	mdanderson.org	37	chr3	195505859	195505859	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtggatgctgaggaagTgtcggtgacaggaagagggg	19	5	0	3	rs151339448		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	195505859	T	C	195505859	3	2	62	1	0	0	0	0	1	0	0	0	10056	1696	59	2		2	MUC4	3	195505859	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	96	195505859	2516571	8	6041			1	65		4	4	6903	N	T_G_C	2.724578e-07
MUC4	4585	mdanderson.org	37	chr3	195509235	195509235	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgtcggtgacaggaagCggggtggcgtgaccggtgga	21	6	0	2	rs77084193		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	195509235	C	A	195509235	2	1	62	1	0	0	0	0	0	0	0	1	10056	755	27	5		5	MUC4	3	195509235	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	3376	195509235	2513195	9	6042			1	65		4	4	6903	N	T_G_C	2.724578e-07
MUC4	4585	mdanderson.org	37	chr3	195512665	195512665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtggtgtcacctgtggatGctgaggaaaggctggtgaca	17	7	1	2	rs79300100	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	195512665	G	A	195512665	3	1	62	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195512665	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	3430	195512665	2509765	10	6043			1	65		4	4	6903	N	T_G_C	2.724578e-07
GPR78	27201	mdanderson.org	37	chr4	8583312	8583312	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaccgggtggcacgcagAcactgccagcgcatggacac	14	14	0	1	rs17844778	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	8583312	A	C	8583312	3	2	62	1	0	0	0	0	1	0	0	0	6767	272	10	5	605	5	GPR78	4	8583312	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		8583312	182570964	11	6044											
MAP9	79884	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	156294336	156294336	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgggtttaggtttcatttTtattttgtctttttcaaatt	6	4	4	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	156294336	T	C	156294336	3	2	62	1	0	0	0	0	1	0	0	0	9347	1850	64	4	1554	4	MAP9	4	156294336	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	147711024	156294336	34859940	12	6045											
FRG1	2483	mdanderson.org	37	chr4	190876287	190876287	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aattggaccaagagaacaatGggaaccagtctttcaaaatg	9	7	2	1	rs113079586		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	190876287	G	A	190876287	4	1	62	1	0	0	0	0	0	1	0	0	6098	1357	47	4	431	4	FRG1	4	190876287	Nonsense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	34581951	190876287	277989	13	6046			2	66		3	3	2318	G		7.84382e-06
FRG1	2483	mdanderson.org	37	chr4	190876307	190876307	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggaaccagtctttcaaaatGtaagtgctgttattgtttat	9	5	2	0	rs200854715		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	190876307	G	A	190876307	5	1	62	1	0	0	0	0	0	0	1	0	6098	1391	48	4	451	4	FRG1	4	190876307	Splice_Site	SNP	G	TCGA-KO-8413-01A-11D-2310-10	20	190876307	277969	14	6047			2	66		3	3	2318	G		7.84382e-06
FRG1	2483	mdanderson.org	37	chr4	190878604	190878604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttattagatgcaatgaaGcaggggacatagaagcaaaa	11	5	0	3	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	190878604	G	A	190878604	3	1	62	1	0	0	0	0	1	0	0	0	6098	971	34	4	506	4	FRG1	4	190878604	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	2297	190878604	275672	15	6048			2	66		3	3	2318	G		7.84382e-06
HCN1	348980	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	45267264	45267264	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatattcctccaggacctcGttgaaattgtccacggaaag	10	10	0	1	rs141455774	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	45267264	G	A	45267264	2	1	62	1	0	0	0	0	0	0	0	1	7054	1136	40	1		1	HCN1	5	45267264	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10		45267264	135647996	16	6049											
HLA-DQA2	3118	mdanderson.org	37	chr6	32714125	32714125	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcactgtcttcatcatccAaggcctgcgttcagttggtg	12	11	4	0	rs200904145	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	32714125	A	G	32714125	3	3	62	1	0	0	0	0	1	0	0	0	7263	130	5	4	736	4	HLA-DQA2	6	32714125	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		32714125	138400942	17	6050											
C6orf170	221322	ucsc.edu	37	chr6	121436334	121436334	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atacctgacagtcattttaaTgccaagctgctgcacagatg	8	10	1	2	rs201909100		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	121436334	T	C	121436334	3	2	62	1	0	0	0	0	1	0	0	0	2365	1464	51	4	760	4	C6orf170	6	121436334	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	88722209	121436334	49678733	18	6051											
UTRN	7402	bcgsc.ca	37	chr6	145110379	145110379	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgaagattggattaatgTctctctccaaaggtctcttg	9	8	4	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	145110379	T	C	145110379	3	2	62	1	0	0	0	0	1	0	0	0	17209	1667	58	2	9126	2	UTRN	6	145110379	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	23674045	145110379	26004688	19	6052											
TBP	6908	mdanderson.org	37	chr6	170871040	170871040	+	Silent	SNP	A	A	G													cagcagcagcagcagcagcaAcagcaacagcagcagcagca					rs55736770	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	170871040	A	G	170871040	2	3	62	1	0	0	0	0	0	0	0	1	15748	40	2	2		2	TBP	6	170871040	Silent	SNP	A	TCGA-KO-8413-01A-11D-2310-10	25760661	170871040	244027	20	6053	160	2									
TBP	6908	mdanderson.org	37	chr6	170871043	170871043	+	Silent	SNP	G	G	A													cagcagcagcagcagcaacaGcaacagcagcagcagcagca					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	170871043	G	A	170871043	2	1	62	1	0	0	0	0	0	0	0	1	15748	962	34	4		4	TBP	6	170871043	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10	3	170871043	244024	21	6054	160	2									
MUC17	140453	mdanderson.org	37	chr7	100678935	100678935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggtagtcagttctgaggCtagcaccctttcagcaactc	10	13	3	1	rs116960680	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	100678935	C	T	100678935	3	4	62	1	0	0	0	0	1	0	0	0	10052	797	28	4	4248	4	MUC17	7	100678935	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10		100678935	58459728	22	6055											
SERPINE1	5054	hgsc.bcm.edu;ucsc.edu	37	chr7	100780310	100780310	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcagcccgcatggccccCgaggagatcatcatggacag	12	14	3	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	100780310	C	T	100780310	2	4	62	1	0	0	0	0	0	0	0	1	14208	639	23	1		1	SERPINE1	7	100780310	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	101375	100780310	58358353	23	6056											
IRF5	3663	mdanderson.org	37	chr7	128587381	128587381	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcccactctgcggccgccTactctgcagccgcccactct	8	22	3	0	rs79724471	byfrequency;by1000genomes	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	128587381	T	C	128587381	2	2	62	1	0	0	0	0	0	0	0	1	7894	1509	53	2		2	IRF5	7	128587381	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10	27807071	128587381	30551282	24	6057											
SDR16C5	195814	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr8	57224802	57224802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttttgcctgttacgattcCggcattgttgattaggatgg	11	7	0	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	57224802	C	T	57224802	3	4	62	1	0	0	0	0	1	0	0	0	14068	661	23	1	570	1	SDR16C5	8	57224802	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10		57224802	89139220	25	6058											
VPS13B	157680	broad.mit.edu	37	chr8	100832274	100832274	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcaatgaatccaaatgggAcctctggctatttgaaggag	10	7	2	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	100832274	A	G	100832274	3	3	62	1	0	0	0	0	1	0	0	0	17296	275	10	2	9377	2	VPS13B	8	100832274	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	43607472	100832274	45531748	26	6059											
UBR5	51366	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr8	103324629	103324629	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gagagaagaagggtcagcatCtggaccagagctgttctgac	14	8	3	4	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	103324629	C	G	103324629	3	3	62	1	0	0	0	0	1	0	0	0	17011	913	32	5	6479	5	UBR5	8	103324629	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	2492355	103324629	43039393	27	6060											
FRG2B	441581	mdanderson.org	37	chr10	135438933	135438933	+	Silent	SNP	C	C	T													accaagctttttcgaattgaCggtgtttggactcctagggc					rs200793608		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	135438933	C	T	135438933	2	4	62	1	0	0	0	0	0	0	0	1	6099	523	19	1		1	FRG2B	10	135438933	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10		135438933	95814	28	6061	161	2	3	67		3	2	29	N	C_A	4.79367e-05
FRG2B	441581	mdanderson.org	37	chr10	135438943	135438943	+	Missense_Mutation	SNP	A	A	T													ttcgaattgacggtgtttggActcctagggcccgagaccta					rs200701804		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	135438943	A	T	135438943	3	4	62	1	0	0	0	0	1	0	0	0	6099	275	10	5	342	5	FRG2B	10	135438943	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	10	135438943	95804	29	6062	161	2	3	67		3	2	29	N	C_A	4.79367e-05
FRG2B	441581	mdanderson.org	37	chr10	135438961	135438961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactcctagggcccgagacCtatgccgcttgctgcgccca	12	16	0	1	rs200048408	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	135438961	C	T	135438961	3	4	62	1	0	0	0	0	1	0	0	0	6099	681	24	4	360	4	FRG2B	10	135438961	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	18	135438961	95786	30	6063			3	67		3	2	29	N	C_A	4.79367e-05
CHID1	66005	broad.mit.edu	37	chr11	869923	869924	+	Frame_Shift_Ins	INS	-	-	C													atagagaccccaacgcccagINSctcccgggccagctccagcc					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	869924	-	C	869923	7	5	62	1	0	1	1	0	0	0	0	0	3374	962	34	0	68	0	CHID1	11	869923	Frame_Shift_Ins	INS	-	TCGA-KO-8413-01A-11D-2310-10		869923	134136593	31	6064											
OR51T1	401665	broad.mit.edu;mdanderson.org	37	chr11	4903765	4903765	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctacctgaatggcactgaCgtattgtttattcttttctc	6	10	3	2	rs138268565		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	4903765	C	T	4903765	2	4	62	1	0	0	0	0	0	0	0	1	11185	535	19	1		1	OR51T1	11	4903765	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	4033842	4903765	130102751	32	6065											
FOLH1	2346	mdanderson.org	37	chr11	49186293	49186293	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaccaagctgtacatcagCggtgtacaatcaactctcag	8	11	3	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	49186293	C	T	49186293	2	4	62	1	0	0	0	0	0	0	0	1	6028	755	27	1		1	FOLH1	11	49186293	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	44282528	49186293	85820223	33	6066											
OR5M9	390162	broad.mit.edu	37	chr11	56230414	56230414	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtccatagtgtgcatattAggctgacagagaatccatag	10	7	0	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	56230414	A	G	56230414	3	3	62	1	0	0	0	0	1	0	0	0	11256	420	15	2	470	2	OR5M9	11	56230414	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	7044121	56230414	78776102	34	6067											
MYO7A	4647	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	76924024	76924024	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cggagccaaacttccctgagAtcctcctaattgccatcaac	6	15	1	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	76924024	A	T	76924024	3	4	62	1	0	0	0	0	1	0	0	0	10160	333	12	5	6598	5	MYO7A	11	76924024	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	20693610	76924024	58082492	35	6068											
PRB2	653247	hgsc.bcm.edu	37	chr12	11546874	11546874	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgggggaccttgaggTttgttgcctccttgtggggg	19	6	0	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	11546874	T	C	11546874	2	2	62	1	0	0	0	0	0	0	0	1	12532	1722	60	2		2	PRB2	12	11546874	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10		11546874	122305021	36	6069											
NCOR2	9612	broad.mit.edu	37	chr12	124819113	124819113	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaggggggcgggcaggggTgcgctgagctgctgtgggtg	24	6	0	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	124819113	T	G	124819113	2	3	62	1	0	0	0	0	0	0	0	1	10315	1683	59	5		5	NCOR2	12	124819113	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10	113272239	124819113	9032782	37	6070											
MAP3K9	4293	broad.mit.edu	37	chr14	71206799	71206799	+	Frame_Shift_Del	DEL	A	A	-													ggaatgatggtggggcttgcAggaggactggagcggctgtt					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		-	71206799	A	-	71206799	7	5	62	1	0	1	0	1	0	0	0	0	9334	175	7	0	1734	0	MAP3K9	14	71206799	Frame_Shift_Del	DEL	A	TCGA-KO-8413-01A-11D-2310-10		71206799	36142741	38	6071											
AHNAK2	113146	mdanderson.org	37	chr14	105415691	105415691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatgctgaggtcagtggTcttcaggtccccctgcatgg	13	11	3	2	rs199921891		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	105415691	T	C	105415691	3	2	62	1	0	0	0	0	1	0	0	0	415	1667	58	2	11294	2	AHNAK2	14	105415691	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	34208892	105415691	1933849	39	6072											
GOLGA6D	653643	mdanderson.org	37	chr15	75586689	75586689	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgcctccctctctccgaagTtttttatgaagtgagcctgg	9	13	1	2	rs2259134		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	75586689	T	A	75586689	3	1	62	1	0	0	0	0	1	0	0	0	6616	1739	60	5	2025	5	GOLGA6D	15	75586689	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10		75586689	26944703	40	6073											
SMG1	23049	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	18849726	18849726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctactccagttacacccaGtgctgtttcaatgttttgtg	7	10	2	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	18849726	G	T	18849726	3	4	62	1	0	0	0	0	1	0	0	0	14893	1020	36	5	3918	5	SMG1	16	18849726	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10		18849726	71505027	41	6074											
GPR139	124274	broad.mit.edu	37	chr16	20084858	20084858	+	Frame_Shift_Del	DEL	G	G	-													ctgtagtagaccacgggcacGaaacccaagccgcaggccga					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		-	20084858	G	-	20084858	7	5	62	1	0	1	0	1	0	0	0	0	6705	1049	37	0	988	0	GPR139	16	20084858	Frame_Shift_Del	DEL	G	TCGA-KO-8413-01A-11D-2310-10	1235132	20084858	70269895	42	6075											
DDX19A	55308	broad.mit.edu	37	chr16	70405336	70405336	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttcccgtggacaaggacggGaatcctgacaatgagaccta	11	11	0	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	70405336	G	A	70405336	2	1	62	1	0	0	0	0	0	0	0	1	4378	1161	41	3		3	DDX19A	16	70405336	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10	50320478	70405336	19949417	43	6076											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	7578212	G	A	7578212	4	1	62	1	0	0	0	0	0	1	0	0	16486	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10		7578212	73616998	44	6077											
SNF8	11267	bcgsc.ca	37	chr17	47010703	47010703	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgatggctctgatcaggTcatctctgaggtaaggaaga	12	7	5	4	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	47010703	T	C	47010703	3	2	62	1	0	0	0	0	1	0	0	0	14944	1667	58	2	360	2	SNF8	17	47010703	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	39432491	47010703	34184507	45	6078											
ZNF521	25925	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	22807259	22807259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaggacagaaacccacggCgacaaatggcacatttatat	9	9	0	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	22807259	C	T	22807259	3	4	62	1	0	0	0	0	1	0	0	0	18070	768	27	1	3332	1	ZNF521	18	22807259	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10		22807259	55269989	46	6079											
EPOR	2057	ucsc.edu	37	chr19	11488817	11488817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccagagtcagataccacaAggtacaggtactttaggtgg	12	8	1	2	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		G	11488817	A	G	11488817	3	3	62	1	0	0	0	0	1	0	0	0	5228	72	3	2	160	2	EPOR	19	11488817	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10		11488817	47640166	47	6080											
MYH14	79784	ucsc.edu	37	chr19	50755954	50755954	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaccctctgaatgacaacgTcgcagccttgctccaccaga	9	15	1	3	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	50755954	T	C	50755954	3	2	62	1	0	0	0	0	1	0	0	0	10111	1667	58	2	1947	2	MYH14	19	50755954	Missense_Mutation	SNP	T	TCGA-KO-8413-01A-11D-2310-10	39267137	50755954	8373029	48	6081											
ZNF808	388558	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr19	53057816	53057816	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtttgtaacaaggttttcatGcgtaattcagtcctggctgt	10	7	2	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	53057816	G	T	53057816	3	4	62	1	0	0	0	0	1	0	0	0	18276	1319	46	5	1657	5	ZNF808	19	53057816	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10	2301862	53057816	6071167	49	6082											
ZNF587	84914	mdanderson.org	37	chr19	58371202	58371202	+	Silent	SNP	C	C	T													gtatgtgggaaattatttggCaataagcacagcgtgactat					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	58371202	C	T	58371202	2	4	62	1	0	0	0	0	0	0	0	1	18125	697	25	4		4	ZNF587	19	58371202	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10	5313386	58371202	757781	50	6083	162	3									
ZNF587	84914	mdanderson.org	37	chr19	58371209	58371209	+	Missense_Mutation	SNP	C	C	A													ggaaattatttggcaataagCacagcgtgactatacatcag					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	58371209	C	A	58371209	3	1	62	1	0	0	0	0	1	0	0	0	18125	710	25	5	1439	5	ZNF587	19	58371209	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	7	58371209	757774	51	6084	162	3									
ZNF587	84914	mdanderson.org	37	chr19	58371212	58371212	+	Missense_Mutation	SNP	A	A	T													aattatttggcaataagcacAgcgtgactatacatcagagg					novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	58371212	A	T	58371212	3	4	62	1	0	0	0	0	1	0	0	0	18125	188	7	5	1442	5	ZNF587	19	58371212	Missense_Mutation	SNP	A	TCGA-KO-8413-01A-11D-2310-10	3	58371212	757771	52	6085	162	3									
LAMA5	3911	mdanderson.org	37	chr20	60887581	60887581	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctccggtggggaagagccGtcgcaggctgtggggaagcg	20	10	0	1	rs944895	byfrequency	TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	60887581	G	A	60887581	3	1	62	1	0	0	0	0	1	0	0	0	8671	1144	40	1	1904	1	LAMA5	20	60887581	Missense_Mutation	SNP	G	TCGA-KO-8413-01A-11D-2310-10		60887581	2137939	53	6086											
FRMPD4	9758	broad.mit.edu	37	chrX	12735002	12735002	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgaacatggccattgcCgcacccccacctggctttag	8	16	0	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	12735002	C	T	12735002	2	4	62	1	0	0	0	0	0	0	0	1	6111	639	23	1		1	FRMPD4	23	12735002	Silent	SNP	C	TCGA-KO-8413-01A-11D-2310-10		12735002	142535558	54	6087											
NUDT10	170685	mdanderson.org	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		A	51076024	G	A	51076024	2	1	62	1	0	0	0	0	0	0	0	1	10805	991	35	4		4	NUDT10	23	51076024	Silent	SNP	G	TCGA-KO-8413-01A-11D-2310-10	38341022	51076024	104194536	55	6088											
BRWD3	254065	broad.mit.edu	37	chrX	79932729	79932729	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggataaatgagatttctcTtttgtttcttttttctcttt	6	5	3	1	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		C	79932729	T	C	79932729	2	2	62	1	0	0	0	0	0	0	0	1	1534	1606	56	2		2	BRWD3	23	79932729	Silent	SNP	T	TCGA-KO-8413-01A-11D-2310-10	28856705	79932729	75337831	56	6089											
SPANXE	171489	broad.mit.edu;mdanderson.org	37	chrX	140785755	140785755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaagttcctcctgtagCgaaccactagtatggtcgag	9	9	0	0	novel		TCGA-KO-8413-01A-11D-2310-10	TCGA-KO-8413-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a5a92196-b322-4ea4-8446-1844057de50b	9da1b142-030b-472b-861e-25be9ab226f3		T	140785755	C	T	140785755	3	4	62	1	0	0	0	0	1	0	0	0	15089	768	27	1	136	1	SPANXE	23	140785755	Missense_Mutation	SNP	C	TCGA-KO-8413-01A-11D-2310-10	60853026	140785755	14484805	57	6090											
CSMD2	114784	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	34037290	34037290	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taagcctccatcggccatgcTccacgctgatgctactgaca	8	15	0	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	34037290	T	C	34037290	3	2	63	1	0	0	0	0	1	0	0	0	3976	1551	54	2	2730	2	CSMD2	1	34037290	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10		34037290	215213331	1	6091											
PTPRF	5792	bcgsc.ca	37	chr1	44079334	44079334	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaccgacctggcggacaAcatcgagcgcctcaaagcca	9	16	2	0	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	44079334	A	G	44079334	3	3	63	1	0	0	0	0	1	0	0	0	12893	43	2	2	4101	2	PTPRF	1	44079334	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	10042044	44079334	205171287	2	6092											
LHX8	431707	broad.mit.edu	37	chr1	75622672	75622672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagtcccaccctccaggcTgtctccacccatgttagaag	8	16	1	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	75622672	T	C	75622672	3	2	63	1	0	0	0	0	1	0	0	0	8839	1580	55	2	935	2	LHX8	1	75622672	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	31543338	75622672	173627949	3	6093											
DENND4B	9909	mdanderson.org	37	chr1	153907306	153907306	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgTtgctgctgctgctgctgttg	14	11	0	0	rs12567786	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	153907306	T	C	153907306	2	2	63	1	0	0	0	0	0	0	0	1	4471	1722	60	2		2	DENND4B	1	153907306	Silent	SNP	T	TCGA-KO-8414-01A-11D-2310-10	78284634	153907306	95343315	4	6094											
FCGR3B	2215	mdanderson.org	37	chr1	161599643	161599643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtactctccactgtcgtTgactgtggcagcgtcaatga	10	12	2	2	rs428888	bycluster;byfrequency;by2hit2allele	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	161599643	T	C	161599643	3	2	63	1	0	0	0	0	1	0	0	0	5834	1812	63	4	469	4	FCGR3B	1	161599643	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	7692337	161599643	87650978	5	6095											
KIFAP3	22920	broad.mit.edu	37	chr1	170004687	170004687	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccttgctaatgcaccaagGgcagtttctaaagaaaaagg	9	9	1	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	170004687	G	A	170004687	2	1	63	1	0	0	0	0	0	0	0	1	8372	1219	43	3		3	KIFAP3	1	170004687	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	8405044	170004687	79245934	6	6096											
LPIN1	23175	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr2	11907890	11907890	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaccatgttttcccttcaggTtgacatagaaatcaatgggg	9	8	2	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	11907890	T	A	11907890	3	1	63	1	0	0	0	0	1	0	0	0	8990	1739	60	5	200	5	LPIN1	2	11907890	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10		11907890	231291483	7	6097											
ADRA2B	151	mdanderson.org	37	chr2	96780986	96780986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacactcttcctcctcctcCtcctcctcttcagcttcatc	1	21	5	0	rs4426564	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	96780986	C	T	96780986	2	4	63	1	0	0	0	0	0	0	0	1	338	680	24	4		4	ADRA2B	2	96780986	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10	84873096	96780986	146418387	8	6098											
OBSL1	23363	mdanderson.org	37	chr2	220417266	220417266	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aggcgggcagaccttcctgtCggatgcggacgcgggctccg	17	13	0	1	rs59332477		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	220417266	C	T	220417266	3	4	63	1	0	0	0	0	1	0	0	0	10892	884	31	1	406	1	OBSL1	2	220417266	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	123636280	220417266	22782107	9	6099											
GPR35	2859	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr2	241570087	241570087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacgtggggctgacagtgCgcctcgcagtgggctggaac	17	11	0	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	241570087	C	T	241570087	3	4	63	1	0	0	0	0	1	0	0	0	6747	768	27	1	720	1	GPR35	2	241570087	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	21152821	241570087	1629286	10	6100											
HRH1	3269	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr3	11301062	11301062	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactatgtggccagcacagcGtccattttcagtgtcttcat	9	11	3	0	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	11301062	G	A	11301062	2	1	63	1	0	0	0	0	0	0	0	1	7413	1132	40	1		1	HRH1	3	11301062	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10		11301062	186721368	11	6101											
ULK4	54986	ucsc.edu	37	chr3	41860994	41860994	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctagggttctttttttttTcttcctaaaatgaagtggga	8	6	3	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	41860994	T	C	41860994	3	2	63	1	0	0	0	0	1	0	0	0	17084	1783	62	4	2134	4	ULK4	3	41860994	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	30559932	41860994	156161436	12	6102											
CELSR3	1951	broad.mit.edu	37	chr3	48697290	48697290	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgatagccagggtgtaGgtcacctggtcctcatagtc	13	10	2	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	48697290	G	T	48697290	2	4	63	1	0	0	0	0	0	0	0	1	3252	987	35	5		5	CELSR3	3	48697290	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	6836296	48697290	149325140	13	6103											
ZBBX	79740	broad.mit.edu	37	chr3	167039952	167039952	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatataggatagaatgtcTtctttaagttcaatattaag	6	5	3	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	167039952	T	C	167039952	2	2	63	1	0	0	0	0	0	0	0	1	17622	1606	56	2		2	ZBBX	3	167039952	Silent	SNP	T	TCGA-KO-8414-01A-11D-2310-10	118342662	167039952	30982478	14	6104											
MUC4	4585	mdanderson.org	37	chr3	195509339	195509339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagcggggtggCgtgaccggtggatgctgagg	22	6	0	3	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	195509339	C	T	195509339	3	4	63	1	0	0	0	0	1	0	0	0	10056	768	27	1		1	MUC4	3	195509339	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	28469387	195509339	2513091	15	6105											
MUC4	4585	broad.mit.edu	37	chr3	195513481	195513481	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcgtgacctgtggatGctgaggaagggctggtgaca	20	6	0	3	rs77462830	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	195513481	G	A	195513481	3	1	63	1	0	0	0	0	1	0	0	0	10056	1319	46	4		4	MUC4	3	195513481	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	4142	195513481	2508949	16	6106											
EVC2	132884	broad.mit.edu	37	chr4	5564754	5564754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtacaggggccagttcgcCaatgggctccagtgacaggt	16	10	0	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	5564754	C	T	5564754	3	4	63	1	0	0	0	0	1	0	0	0	5325	594	21	4	182	4	EVC2	4	5564754	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		5564754	185589522	17	6107											
FBXL5	26234	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	15640143	15640143	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatctcacctttatctgactTttcatccacggaatatttaa	3	10	3	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	15640143	T	C	15640143	3	2	63	1	0	0	0	0	1	0	0	0	5771	1850	64	4	1536	4	FBXL5	4	15640143	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	10075389	15640143	175514133	18	6108											
CDC25C	995	broad.mit.edu	37	chr5	137666827	137666827	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactgggtcctgagccagAgcttccttcctctcttgtgg	10	12	1	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	137666827	A	G	137666827	3	3	63	1	0	0	0	0	1	0	0	0	3093	304	11	2	1430	2	CDC25C	5	137666827	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10		137666827	43248433	19	6109											
TREML2	79865	mdanderson.org	37	chr6	41166017	41166017	+	Missense_Mutation	SNP	C	C	T													ggggccctttcacccagactCgggcaaagccaggctcacac					rs77093113	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	41166017	C	T	41166017	3	4	63	1	0	0	0	0	1	0	0	0	16578	884	31	1	775	1	TREML2	6	41166017	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		41166017	129949050	20	6110	163	2									
TREML2	79865	mdanderson.org	37	chr6	41166021	41166021	+	Missense_Mutation	SNP	C	C	T													ccctttcacccagactcgggCaaagccaggctcacacttct					rs61736679	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	41166021	C	T	41166021	3	4	63	1	0	0	0	0	1	0	0	0	16578	710	25	4	779	4	TREML2	6	41166021	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	4	41166021	129949046	21	6111	163	2									
DST	667	broad.mit.edu;bcgsc.ca	37	chr6	56417323	56417323	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaaaggcttttatagtttCcttttgcttttgcaatgttt	7	5	0	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	56417323	C	A	56417323	4	1	63	1	0	0	0	0	0	1	0	0	4820	864	30	5	7289	5	DST	6	56417323	Nonsense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	15251302	56417323	114697744	22	6112											
GGCT	79017	hgsc.bcm.edu	37	chr7	30544237	30544238	+	Frame_Shift_Del	DEL	CT	CT	-													aggggtttcggaggtggatcCtctctgtcagcaggttgctg					novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		-	30544238	CT	-	30544237	7	5	63	1	0	1	0	1	0	0	0	0	6411	681	24	0	493	0	GGCT	7	30544237	Frame_Shift_Del	DEL	CT	TCGA-KO-8414-01A-11D-2310-10		30544237	128594426	23	6113	164	2									
GGCT	79017	bcgsc.ca	37	chr7	30544238	30544239	+	Frame_Shift_Del	DEL	CT	CT	-													ggggtttcggaggtggatccTctctgtcagcaggttgctgc					novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		-	30544239	CT	-	30544238	7	5	63	1	0	1	0	1	0	0	0	0	6411	1550	54	0	494	0	GGCT	7	30544238	Frame_Shift_Del	DEL	CT	TCGA-KO-8414-01A-11D-2310-10	1	30544238	128594425	24	6114	164	2									
BAZ1B	9031	broad.mit.edu	37	chr7	72863961	72863961	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatagagggccggcctcagAcaaaacaggtggaaggcttt	13	9	2	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	72863961	A	G	72863961	2	3	63	1	0	0	0	0	0	0	0	1	1334	273	10	2		2	BAZ1B	7	72863961	Silent	SNP	A	TCGA-KO-8414-01A-11D-2310-10	42319723	72863961	86274702	25	6115											
GNAI1	2770	bcgsc.ca	37	chr7	79818278	79818284	+	Frame_Shift_Del	DEL	ATCTGGT	ATCTGGT	-													tatttttaggtgctggtgaaTctggtaaaagtacaattgtg					novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	ATCTGGT	ATCTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		-	79818284	ATCTGGT	-	79818278	7	5	63	1	0	1	0	1	0	0	0	0	6560	1435	50	0	136	0	GNAI1	7	79818278	Frame_Shift_Del	DEL	ATCTGGT	TCGA-KO-8414-01A-11D-2310-10	6954317	79818278	79320385	26	6116											
GRM3	2913	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	86479693	86479693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttctcttgtaggtgcagaCgacaaccatgtgcatctctg	9	12	2	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	86479693	C	T	86479693	3	4	63	1	0	0	0	0	1	0	0	0	6856	536	19	1	2413	1	GRM3	7	86479693	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	6661415	86479693	72658970	27	6117											
PTPRN2	5799	broad.mit.edu;bcgsc.ca	37	chr7	157449123	157449123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggatgaggcgctgctgcGtgcggaggggctggggatcg	21	9	0	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	157449123	G	A	157449123	3	1	63	1	0	0	0	0	1	0	0	0	12900	1145	40	1	965	1	PTPRN2	7	157449123	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	70969430	157449123	1689540	28	6118											
TRAPPC9	83696	broad.mit.edu	37	chr8	141321473	141321473	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgggccacatctttctttTctgaagagaagatgaaaaca	8	7	3	4	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	141321473	T	C	141321473	3	2	63	1	0	0	0	0	1	0	0	0	16570	1797	62	4	2006	4	TRAPPC9	8	141321473	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10		141321473	5042549	29	6119											
PRSS3	5646	mdanderson.org	37	chr9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A													gatgcacatgagagagacaaGtggcttcacattgaagaagg					rs201061108		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	33794809	G	A	33794809	3	1	63	1	0	0	0	0	1	0	0	0	12711	1044	36	4		4	PRSS3	9	33794809	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10		33794809	107418622	30	6120	165	2									
PRSS3	5646	mdanderson.org	37	chr9	33794812	33794812	+	Missense_Mutation	SNP	G	G	T													gcacatgagagagacaagtgGcttcacattgaagaagggga					rs199873220		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	33794812	G	T	33794812	3	4	63	1	0	0	0	0	1	0	0	0	12711	1218	42	5		5	PRSS3	9	33794812	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	3	33794812	107418619	31	6121	165	2									
ADAMTS14	140766	broad.mit.edu	37	chr10	72496471	72496471	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcaagcagctgtggtgCagccatcctgacaacccgta	10	15	0	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	72496471	C	T	72496471	2	4	63	1	0	0	0	0	0	0	0	1	259	718	25	4		4	ADAMTS14	10	72496471	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10		72496471	63038276	32	6122											
KNDC1	85442	mdanderson.org	37	chr10	135000148	135000148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagagaattccagaaggagcTaggcagctggaaagtgcagc	15	7	0	2	rs3810965	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	135000148	T	C	135000148	2	2	63	1	0	0	0	0	0	0	0	1	8487	1509	53	2		2	KNDC1	10	135000148	Silent	SNP	T	TCGA-KO-8414-01A-11D-2310-10	62503677	135000148	534599	33	6123			1	68		2	2	12	N	T_A	1.954321e-05
KNDC1	85442	mdanderson.org	37	chr10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaggagctaggcagctggAaagtgcagccgcggagcagg	18	8	0	1	rs3810964	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	135000159	A	G	135000159	3	3	63	1	0	0	0	0	1	0	0	0	8487	246	9	4	1329	4	KNDC1	10	135000159	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	11	135000159	534588	34	6124			1	68		2	2	12	N	T_A	1.954321e-05
MUC6	4588	mdanderson.org	37	chr11	1016628	1016628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattggtggggctgtgtggGtggaccctgtggccttgagc	18	8	1	1	rs202039948		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	1016628	G	A	1016628	3	1	63	1	0	0	0	0	1	0	0	0	10058	1261	44	3	1158	3	MUC6	11	1016628	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10		1016628	133989888	35	6125			2	69		2	2	35	G		6.040504e-05
MUC6	4588	mdanderson.org	37	chr11	1016662	1016662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgagcgttgttggtggagGaacggtgcctgttggcgttg	18	6	0	1	rs201489806		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	1016662	G	A	1016662	3	1	63	1	0	0	0	0	1	0	0	0	10058	1174	41	3	1192	3	MUC6	11	1016662	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	34	1016662	133989854	36	6126			2	69		2	2	35	G		6.040504e-05
MUC2	4583	broad.mit.edu	37	chr11	1092624	1092624	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accactcccagccctccaacCaccactcccagccctccaac	2	25	0	0	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	1092624	C	A	1092624	2	1	63	1	0	0	0	0	0	0	0	1	10053	581	21	5		5	MUC2	11	1092624	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10	75962	1092624	133913892	37	6127											
GYLTL1B	120071	broad.mit.edu	37	chr11	45945039	45945039	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagctcttgcatgtggccAtcgtgtgtgcggggcataac	13	12	1	0	rs200481274		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	45945039	A	G	45945039	3	3	63	1	0	0	0	0	1	0	0	0	6965	217	8	4	307	4	GYLTL1B	11	45945039	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	44852415	45945039	89061477	38	6128											
RCOR2	283248	mdanderson.org	37	chr11	63679369	63679369	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgggggctccagaggggTtccaatcagggtgggtgggg	21	7	1	1	rs320108	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	63679369	T	C	63679369	3	2	63	1	0	0	0	0	1	0	0	0	13275	1725	60	2	35	2	RCOR2	11	63679369	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	17734330	63679369	71327147	39	6129											
RCOR2	283248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63681937	63681937	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgccgggcctgtctgtccAtcacactagttcggctgcgg	13	15	2	0	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	63681937	A	G	63681937	3	3	63	1	0	0	0	0	1	0	0	0	13275	217	8	4	1042	4	RCOR2	11	63681937	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	2568	63681937	71324579	40	6130											
OR2AT4	341152	hgsc.bcm.edu	37	chr11	74800084	74800084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagcactgaggccaggatGtggacataggagagaagcac	15	8	0	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	74800084	G	A	74800084	2	1	63	1	0	0	0	0	0	0	0	1	11066	1368	48	4		4	OR2AT4	11	74800084	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	11118147	74800084	60206432	41	6131											
CEP57	9702	broad.mit.edu	37	chr11	95561021	95561021	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgaagcaacacagtaaAgctttgtgcaatgatcgagt	9	7	0	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	95561021	A	G	95561021	2	3	63	1	0	0	0	0	0	0	0	1	3285	69	3	2		2	CEP57	11	95561021	Silent	SNP	A	TCGA-KO-8414-01A-11D-2310-10	20760937	95561021	39445495	42	6132											
PDGFD	80310	bcgsc.ca	37	chr11	104034625	104034625	+	Frame_Shift_Del	DEL	A	A	-													gctgcaaaagtttgcgcagaTtagagtgtagacaaagatga					novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		-	104034625	A	-	104034625	7	5	63	1	0	1	0	1	0	0	0	0	11739	1493	52	0	1109	0	PDGFD	11	104034625	Frame_Shift_Del	DEL	A	TCGA-KO-8414-01A-11D-2310-10	8473604	104034625	30971891	43	6133											
FEZ1	9638	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr11	125359542	125359542	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaaaaattctcaagctcGgagagggaggggtcctcgag	15	7	1	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	125359542	G	A	125359542	2	1	63	1	0	0	0	0	0	0	0	1	5872	1103	39	1		1	FEZ1	11	125359542	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10	21324917	125359542	9646974	44	6134											
PRH2	5555	mdanderson.org	37	chr12	11083356	11083356	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggtgatgggaaccagAatgatggccctcagcaggga	15	9	1	3	rs116998526	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	11083356	A	G	11083356	3	3	63	1	0	0	0	0	1	0	0	0	12572	246	9	4	206	4	PRH2	12	11083356	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10		11083356	122768539	45	6135											
GXYLT1	283464	mdanderson.org	37	chr12	42512817	42512817	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttactctgcctttaaagctAtgatgtagctgatcttcagc	7	10	3	2	rs201566551		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	42512817	A	G	42512817	2	3	63	1	0	0	0	0	0	0	0	1	6961	446	16	4		4	GXYLT1	12	42512817	Silent	SNP	A	TCGA-KO-8414-01A-11D-2310-10	31429461	42512817	91339078	46	6136											
SYNE2	23224	bcgsc.ca	37	chr14	64445578	64445578	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgttttccagaatcaacaAcattttggagaaaaaattta	5	6	1	2	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	64445578	A	G	64445578	3	3	63	1	0	0	0	0	1	0	0	0	15547	43	2	2	1465	2	SYNE2	14	64445578	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10		64445578	42903962	47	6137											
PAPLN	89932	ucsc.edu	37	chr14	73721711	73721711	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccttgtaacacgcagcccTgtcatctcccccagggtaag	9	15	2	0	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		C	73721711	T	C	73721711	3	2	63	1	0	0	0	0	1	0	0	0	11507	1580	55	2	1577	2	PAPLN	14	73721711	Missense_Mutation	SNP	T	TCGA-KO-8414-01A-11D-2310-10	9276133	73721711	33627829	48	6138											
AHNAK2	113146	mdanderson.org	37	chr14	105412138	105412138	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaggccagctccctcgAgaacgtggccctctgggagc	13	14	1	2	rs200384326		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	105412138	A	G	105412138	3	3	63	1	0	0	0	0	1	0	0	0	415	304	11	2	7741	2	AHNAK2	14	105412138	Missense_Mutation	SNP	A	TCGA-KO-8414-01A-11D-2310-10	31690427	105412138	1937402	49	6139											
SETD1A	9739	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30990508	30990508	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgcgcctctgcgtccccCagaaccacctgctgggcccc	10	20	1	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		G	30990508	C	G	30990508	3	3	63	1	0	0	0	0	1	0	0	0	14227	594	21	5	3451	5	SETD1A	16	30990508	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		30990508	59364245	50	6140											
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	chr17	7577543	7577543	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgaggatgggcctccggttCatgccgcccatgcaggaact	14	12	1	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	7577543	C	A	7577543	3	1	63	1	0	0	0	0	1	0	0	0	16486	826	29	5	552	5	TP53	17	7577543	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10		7577543	73617667	51	6141											
MYO15A	51168	broad.mit.edu	37	chr17	18025035	18025035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggccctgtgccatcccCcaccctccagcctgaggatc	9	20	0	1	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	18025035	C	T	18025035	3	4	63	1	0	0	0	0	1	0	0	0	10141	623	22	3	2923	3	MYO15A	17	18025035	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	10447492	18025035	63170175	52	6142											
CDC27	996	mdanderson.org	37	chr17	45234664	45234664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agataaactatgattaggtaCttgtgttgtgcaagagttgg	12	3	0	3	novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	45234664	C	T	45234664	3	4	63	1	0	0	0	0	1	0	0	0	3095	565	20	4	1986	4	CDC27	17	45234664	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	27209629	45234664	35960546	53	6143											
ATP8B3	148229	mdanderson.org	37	chr19	1789556	1789556	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacggcgggctctggagtcCtgggctggcggtgcagccag	18	12	1	0	rs12978609	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	1789556	C	T	1789556	2	4	63	1	0	0	0	0	0	0	0	1	1200	680	24	4		4	ATP8B3	19	1789556	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10		1789556	57339427	54	6144											
OR10H2	26538	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr19	15839690	15839690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accctgatggccaccacctaCgcagtcctcacgcccttcct	6	20	1	1	rs141193809	by1000genomes	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	15839690	C	T	15839690	2	4	63	1	0	0	0	0	0	0	0	1	10985	547	19	1		1	OR10H2	19	15839690	Silent	SNP	C	TCGA-KO-8414-01A-11D-2310-10	14050134	15839690	43289293	55	6145											
PEG3	5178	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr19	57327003	57327003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgtatttctttttagcaCgagccttctggtattcacgg	8	9	3	0	rs140722468		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	57327003	C	T	57327003	3	4	63	1	0	0	0	0	1	0	0	0	11799	536	19	1	1963	1	PEG3	19	57327003	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	41487313	57327003	1801980	56	6146											
ZNF814	730051	mdanderson.org	37	chr19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T													cacattctccacattcataaGgtcttttcccagtgtgaact					rs111727691		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	58385790	G	T	58385790	3	4	63	1	0	0	0	0	1	0	0	0	18279	1000	35	5	1603	5	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-KO-8414-01A-11D-2310-10	1058787	58385790	743193	57	6147	166	3									
ZNF814	730051	mdanderson.org	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		T	58385793	C	T	58385793	3	4	63	1	0	0	0	0	1	0	0	0	18279	913	32	4	1606	4	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-KO-8414-01A-11D-2310-10	3	58385793	743190	58	6148	166	3									
ZNF814	730051	mdanderson.org	37	chr19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT													ccacattcataaggtcttttCccagtgtgaactctctgatg					novel		TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		TT	58385799	CC	TT	58385798	3	4	63	1	0	0	0	0	1	0	0	0	18279	842	30	3	1611	3	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-KO-8414-01A-11D-2310-10	5	58385798	743185	59	6149	166	3									
NCOA3	8202	mdanderson.org	37	chr20	46279827	46279827	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatgatgcagcagcagcaGcagcagcaacagcagcagca	12	11	0	2	rs6018623	byfrequency	TCGA-KO-8414-01A-11D-2310-10	TCGA-KO-8414-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2a61c3d7-f0c1-45d1-9eca-02fb72e95c13	edf00a92-13fd-4c2f-b41c-16458d1a47dd		A	46279827	G	A	46279827	2	1	63	1	0	0	0	0	0	0	0	1	10309	962	34	4		4	NCOA3	20	46279827	Silent	SNP	G	TCGA-KO-8414-01A-11D-2310-10		46279827	16745693	60	6150											
UBXN11	91544	mdanderson.org	37	chr1	26608828	26608828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtccaggacagggactggGgccgggaccgggaccgggac	21	11	0	0	rs1134584		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	26608828	G	A	26608828	3	1	64	1	0	0	0	0	1	0	0	0	17019	1232	43	3	41	3	UBXN11	1	26608828	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		26608828	222641793	1	6151											
NASP	4678	mdanderson.org	37	chr1	46073361	46073362	+	Missense_Mutation	DNP	CA	CA	TG													agtgcagagaaaaaggaggtCaggagaagcagggagaggta					rs75187774	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		TG	46073362	CA	TG	46073361	3	4	64	1	0	0	0	0	1	0	0	0	10250	827	29	4	877	4	NASP	1	46073361	Missense_Mutation	DNP	CA	TCGA-KO-8415-01A-11D-2310-10	19464533	46073361	203177260	2	6152			1	70		2	2	13	N	G_CA	3.139817e-05
NASP	4678	mdanderson.org	37	chr1	46073373	46073373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaggtcaggagaagcagGgagaggtaattgtgagcata	17	3	1	3	rs199792714	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	46073373	G	A	46073373	3	1	64	1	0	0	0	0	1	0	0	0	10250	1233	43	3	889	3	NASP	1	46073373	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	12	46073373	203177248	3	6153			1	70		2	2	13	N	G_CA	3.139817e-05
FAM189B	10712	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr1	155224214	155224214	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagagtgaatggccgcttccAggacacaatgccaaccaccc	9	14	0	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	155224214	A	T	155224214	3	4	64	1	0	0	0	0	1	0	0	0	5562	188	7	5	1791	5	FAM189B	1	155224214	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	109150841	155224214	94026407	4	6154											
FAM5C	339479	hgsc.bcm.edu;ucsc.edu	37	chr1	190067565	190067565	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacttgatgcgacttctcagGtagatgtgtactgtctcaaa	10	8	2	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	190067565	G	A	190067565	2	1	64	1	0	0	0	0	0	0	0	1	5643	1256	44	3		3	FAM5C	1	190067565	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10	34843351	190067565	59183056	5	6155											
OR14C36	127066	mdanderson.org	37	chr1	248512749	248512749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcttttcgaccgtgctcGggtttccaagaggagcagac	11	11	1	2	rs28377739	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	248512749	G	A	248512749	3	1	64	1	0	0	0	0	1	0	0	0	11025	1116	39	1	675	1	OR14C36	1	248512749	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	58445184	248512749	737872	6	6156											
XDH	7498	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	31621476	31621476	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctcctccatggtgggctcGggctgattccggagcagtgt	14	11	1	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	31621476	G	A	31621476	2	1	64	1	0	0	0	0	0	0	0	1	17532	1103	39	1		1	XDH	2	31621476	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10		31621476	211577897	7	6157											
TEKT4	150483	mdanderson.org	37	chr2	95539855	95539855	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaccttccaagagaggTgggccccagctctgcccctg	10	18	1	1	rs201662522	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	95539855	T	G	95539855	5	3	64	1	0	0	0	0	0	0	1	0	15859	1710	59	5	725	5	TEKT4	2	95539855	Splice_Site	SNP	T	TCGA-KO-8415-01A-11D-2310-10	63918379	95539855	147659518	8	6158											
GTDC1	79712	broad.mit.edu	37	chr2	144765015	144765015	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctctgctctggctgaaaAggaagggccatggacagaac	12	10	3	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	144765015	A	G	144765015	2	3	64	1	0	0	0	0	0	0	0	1	6909	59	3	2		2	GTDC1	2	144765015	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10	49225160	144765015	98434358	9	6159											
TNS1	7145	broad.mit.edu	37	chr2	218713275	218713275	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggcctctgggtagcccccCtcactggtgttggtgacccc	13	15	2	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	218713275	C	T	218713275	2	4	64	1	0	0	0	0	0	0	0	1	16447	680	24	4		4	TNS1	2	218713275	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	73948260	218713275	24486098	10	6160											
USP37	57695	broad.mit.edu	37	chr2	219350461	219350461	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacaagaatactccagttcTtcggcctataaaaagaagga	7	9	2	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	219350461	T	C	219350461	2	2	64	1	0	0	0	0	0	0	0	1	17174	1606	56	2		2	USP37	2	219350461	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	637186	219350461	23848912	11	6161											
OR5H1	26341	broad.mit.edu	37	chr3	97851659	97851659	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taatatatctcatcaccatcAtggggaatcttggtctgatt	7	8	5	1	rs199787047	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	97851659	A	T	97851659	3	4	64	1	0	0	0	0	1	0	0	0	11238	217	8	5	120	5	OR5H1	3	97851659	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10		97851659	100170771	12	6162											
ARGFX	503582	bcgsc.ca	37	chr3	121304933	121304933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagcaatcagcaaagcaacGaaaccagatccttccatcca	6	14	1	1	rs9813391	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	121304933	G	A	121304933	3	1	64	1	0	0	0	0	1	0	0	0	861	1058	37	1	448	1	ARGFX	3	121304933	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	23453274	121304933	76717497	13	6163											
MUC4	4585	mdanderson.org	37	chr3	195506482	195506482	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgtggatactgaggaaGtgtcggtgacaggaaggggg	19	5	0	2	rs113936020		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	195506482	G	T	195506482	3	4	64	1	0	0	0	0	1	0	0	0	10056	1029	36	5		5	MUC4	3	195506482	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	74201549	195506482	2515948	14	6164			2	71		4	4	3585	N	T_G_C	1.363722e-07
MUC4	4585	mdanderson.org	37	chr3	195509287	195509287	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggtgacatgaagagggTtggcgtgacctgtggatgct	18	6	0	4	rs201610800		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	195509287	T	G	195509287	3	3	64	1	0	0	0	0	1	0	0	0	10056	1725	60	5		5	MUC4	3	195509287	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	2805	195509287	2513143	15	6165			2	71		4	4	3585	N	T_G_C	1.363722e-07
MUC4	4585	mdanderson.org	37	chr3	195509414	195509414	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggatattgaggaagtgtCggtgacaggaagagaggtgg	19	2	0	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	195509414	C	T	195509414	3	4	64	1	0	0	0	0	1	0	0	0	10056	884	31	1		1	MUC4	3	195509414	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	127	195509414	2513016	16	6166			2	71		4	4	3585	N	T_G_C	1.363722e-07
MUC4	4585	broad.mit.edu	37	chr3	195510066	195510066	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggggtggtgtgaccTgtggatgctgaggaagggct	21	4	0	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	195510066	T	G	195510066	2	3	64	1	0	0	0	0	0	0	0	1	10056	1567	55	5		5	MUC4	3	195510066	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	652	195510066	2512364	17	6167			2	71		4	4	3585	N	T_G_C	1.363722e-07
F2R	2149	broad.mit.edu	37	chr5	76029194	76029194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctgagtgccagaggtacGtctacagtatcttatgctgc	10	11	3	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	76029194	G	A	76029194	3	1	64	1	0	0	0	0	1	0	0	0	5383	1145	40	1	1150	1	F2R	5	76029194	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		76029194	104886066	18	6168											
GPR98	84059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	89981756	89981756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caatgtgactagaacaggagGagcatttgcagatgtctctg	12	7	1	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	89981756	G	A	89981756	3	1	64	1	0	0	0	0	1	0	0	0	6779	1174	41	3	6548	3	GPR98	5	89981756	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	13952562	89981756	90933504	19	6169											
PCDHGA4	56111	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr5	140736273	140736273	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagggtgcacctctgtcCtcctatgtctccatcaactc	6	16	3	0	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	140736273	C	T	140736273	2	4	64	1	0	0	0	0	0	0	0	1	11635	668	24	4		4	PCDHGA4	5	140736273	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	50754517	140736273	40178987	20	6170											
RANBP17	64901	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	170725856	170725856	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatgcagtctcgacatgatGagctgacccgacttttctga	9	12	2	4	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	170725856	G	A	170725856	3	1	64	1	0	0	0	0	1	0	0	0	13119	1290	45	4	3371	4	RANBP17	5	170725856	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	29989583	170725856	10189404	21	6171											
MDC1	9656	ucsc.edu	37	chr6	30681950	30681950	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accacattcttcccgaggtgTagtgggaaatctaagaatta	9	8	2	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	30681950	T	C	30681950	2	2	64	1	0	0	0	0	0	0	0	1	9480	1625	57	2		2	MDC1	6	30681950	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10		30681950	140433117	22	6172											
SLC26A8	116369	bcgsc.ca	37	chr6	35918965	35918965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtttctgagtaggtttccCgtatcactgtctcggattca	9	10	4	1	rs116200048	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	35918965	C	T	35918965	3	4	64	1	0	0	0	0	1	0	0	0	14621	652	23	1	473	1	SLC26A8	6	35918965	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	5237015	35918965	135196102	23	6173											
TREML1	340205	broad.mit.edu	37	chr6	41121543	41121543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaaaatctggggccccCtggccccatccaccatgcag	10	16	1	0	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	41121543	C	T	41121543	3	4	64	1	0	0	0	0	1	0	0	0	16577	681	24	4	624	4	TREML1	6	41121543	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	5202578	41121543	129993524	24	6174											
RSPH10B2	728194	mdanderson.org	37	chr7	5983092	5983092	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgtccgctgttgctcacGgaataaattgcctaaaaata	9	9	1	0	rs201187545		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	5983092	G	A	5983092	3	1	64	1	0	0	0	0	1	0	0	0	13799	1116	39	1	1019	1	RSPH10B2	7	5983092	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		5983092	153155571	25	6175											
SP8	221833	mdanderson.org	37	chr7	20824614	20824614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccgagtgactcaggccCgagtaatccgagttgtagcc	13	11	1	1	rs34908430	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	20824614	C	T	20824614	2	4	64	1	0	0	0	0	0	0	0	1	15068	639	23	1		1	SP8	7	20824614	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	14841522	20824614	138314049	26	6176											
FKBP9	11328	mdanderson.org	37	chr7	33044951	33044951	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagaccaggaagccaaacaCgatgaactctaaacctggca	8	11	1	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	33044951	C	G	33044951	3	3	64	1	0	0	0	0	1	0	0	0	5964	535	19	5	1739	5	FKBP9	7	33044951	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	12220337	33044951	126093712	27	6177											
CHCHD2	51142	broad.mit.edu	37	chr7	56172050	56172050	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtggttgccatctgggCcatcagacctggctgccggg	15	12	2	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	56172050	C	T	56172050	3	4	64	1	0	0	0	0	1	0	0	0	3345	739	26	3	298	3	CHCHD2	7	56172050	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	23127099	56172050	102966613	28	6178											
DYNC1I1	1780	ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	95668630	95668630	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgaaggtcaccaagggcCagtgacaggaattaactgcc	11	10	1	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	95668630	C	A	95668630	3	1	64	1	0	0	0	0	1	0	0	0	4879	594	21	5	1507	5	DYNC1I1	7	95668630	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	39496580	95668630	63470033	29	6179											
CSMD1	64478	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	3263582	3263582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggtggagctccagaccaCgttcccgtcttgcagtatgc	11	14	1	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	3263582	C	T	3263582	3	4	64	1	0	0	0	0	1	0	0	0	3975	536	19	1	8685	1	CSMD1	8	3263582	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10		3263582	143100440	30	6180											
GPR124	25960	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	37688272	37688272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accacctcatcccgtccctaCgccaagtggtgttccagggg	10	16	1	0	rs144591273		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	37688272	C	T	37688272	3	4	64	1	0	0	0	0	1	0	0	0	6695	536	19	1	768	1	GPR124	8	37688272	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	34424690	37688272	108675750	31	6181											
TG	7038	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr8	134145788	134145788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggcctgactttgtaccccGtgctggtggagagaactaca	12	11	0	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	134145788	G	A	134145788	3	1	64	1	0	0	0	0	1	0	0	0	15917	1145	40	1	8258	1	TG	8	134145788	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	96457516	134145788	12218234	32	6182											
PTK2	5747	hgsc.bcm.edu;bcgsc.ca	37	chr8	141856698	141856698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtatagttatcatcttacCgtatttctagacaacccaac	4	10	3	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	141856698	C	T	141856698	3	4	64	1	0	0	0	0	1	0	0	0	12852	666	23	1	2736	1	PTK2	8	141856698	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	7710910	141856698	4507324	33	6183											
PLEC	5339	mdanderson.org	37	chr8	144996263	144996263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgccgctgctgctccaGctgctgcagctcctcctgct	10	19	0	0	rs11988293	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	144996263	G	A	144996263	2	1	64	1	0	0	0	0	0	0	0	1	12132	962	34	4		4	PLEC	8	144996263	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10	3139565	144996263	1367759	34	6184											
GLIS3	169792	mdanderson.org	37	chr9	4118111	4118111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtaagggggtggggggcctGggggcggcggcagaggaggg	28	5	0	1	rs6415788	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	4118111	G	T	4118111	3	4	64	1	0	0	0	0	1	0	0	0	6503	1348	47	5	1457	5	GLIS3	9	4118111	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		4118111	137095320	35	6185											
LAMC3	10319	mdanderson.org	37	chr9	133884820	133884820	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgcgggcgcgggggctcaTtgccagcgctgcgacgccgc	18	16	1	0	rs3739512	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	133884820	T	G	133884820	3	3	64	1	0	0	0	0	1	0	0	0	8678	1490	52	5	221	5	LAMC3	9	133884820	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	129766709	133884820	7328611	36	6186											
PTEN	5728	hgsc.bcm.edu	37	chr10	89720712	89720712	+	Frame_Shift_Del	DEL	A	A	-													aggaccagaggaaacctcagAaaaagtagaaaatggaagtc					novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		-	89720712	A	-	89720712	7	5	64	1	0	1	0	1	0	0	0	0	12827	246	9	0	893	0	PTEN	10	89720712	Frame_Shift_Del	DEL	A	TCGA-KO-8415-01A-11D-2310-10		89720712	45814035	37	6187	167	2									
PTEN	5728	bcgsc.ca	37	chr10	89720713	89720713	+	Frame_Shift_Del	DEL	A	A	-													ggaccagaggaaacctcagaAaaagtagaaaatggaagtct					novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		-	89720713	A	-	89720713	7	5	64	1	0	1	0	1	0	0	0	0	12827	11	1	0	894	0	PTEN	10	89720713	Frame_Shift_Del	DEL	A	TCGA-KO-8415-01A-11D-2310-10	1	89720713	45814034	38	6188	167	2									
MUC6	4588	mdanderson.org	37	chr11	1017068	1017068	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggatgtagaagttttggcCgtgctaaatgagcttgggga	16	4	0	2	rs78992004		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	1017068	C	T	1017068	2	4	64	1	0	0	0	0	0	0	0	1	10058	639	23	1		1	MUC6	11	1017068	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10		1017068	133989448	39	6189			3	72		3	3	878	N	T_C_A	2.625848e-06
MUC6	4588	mdanderson.org	37	chr11	1017744	1017744	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtagaggttttggctgtgTttaatgagctcagggcttgg	15	4	1	2	rs200243990		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	1017744	T	C	1017744	3	2	64	1	0	0	0	0	1	0	0	0	10058	1725	60	2	2274	2	MUC6	11	1017744	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	676	1017744	133988772	40	6190			3	72		3	3	878	N	T_C_A	2.625848e-06
MUC6	4588	mdanderson.org	37	chr11	1017945	1017945	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtcaccaaagaggtggagAaaggtggaacgtgagtggga	18	4	1	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	1017945	A	G	1017945	3	3	64	1	0	0	0	0	1	0	0	0	10058	246	9	4	2475	4	MUC6	11	1017945	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	201	1017945	133988571	41	6191			3	72		3	3	878	N	T_C_A	2.625848e-06
MUC2	4583	mdanderson.org	37	chr11	1093311	1093311	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accactacggtgaccccaacCccaacacccaccggcacaca	5	21	0	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	1093311	C	A	1093311	2	1	64	1	0	0	0	0	0	0	0	1	10053	610	22	5		5	MUC2	11	1093311	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	75366	1093311	133913205	42	6192											
ZNF215	7762	bcgsc.ca	37	chr11	6977554	6977554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccttcagtaaaagtgaagAcagtaataatccaacactcc	7	10	1	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	6977554	A	G	6977554	3	3	64	1	0	0	0	0	1	0	0	0	17876	275	10	2	1364	2	ZNF215	11	6977554	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	5884243	6977554	128028962	43	6193											
OR4X1	390113	hgsc.bcm.edu	37	chr11	48285986	48285986	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcctgcgcagacaccttcTtcattagcctgctgatcatc	8	14	3	2	rs76457745	alternate_allele	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	48285986	T	A	48285986	3	1	64	1	0	0	0	0	1	0	0	0	11163	1609	56	5	576	5	OR4X1	11	48285986	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	41308432	48285986	86720530	44	6194											
CDC42BPG	55561	mdanderson.org	37	chr11	64601933	64601933	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgggcctcctgcacctgTgtcagccgctcctgcaggcc	12	17	1	0	rs7933683	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	64601933	T	C	64601933	2	2	64	1	0	0	0	0	0	0	0	1	3103	1683	59	2		2	CDC42BPG	11	64601933	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	16315947	64601933	70404583	45	6195											
SLC2A3	6515	mdanderson.org	37	chr12	8074168	8074168	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggactttgaagaaggtaaaAgccaagaaggtaatgaggaa	14	3	0	4	rs78504893		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	8074168	A	G	8074168	2	3	64	1	0	0	0	0	0	0	0	1	14643	59	3	2		2	SLC2A3	12	8074168	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10		8074168	125777727	46	6196											
TAS2R19	259294	mdanderson.org	37	chr12	11174327	11174327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttttagcttcctacttcCcataatcaggatgaatgagt	7	9	1	2	rs72475481	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	11174327	C	T	11174327	3	4	64	1	0	0	0	0	1	0	0	0	15671	632	22	3	58	3	TAS2R19	12	11174327	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	3100159	11174327	122677568	47	6197											
TAS2R31	259290	mdanderson.org	37	chr12	11183797	11183797	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	accgccagagcagtgagaatCtggtcagcaaaagagatctt	11	9	3	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	11183797	C	T	11183797	2	4	64	1	0	0	0	0	0	0	0	1	15675	912	32	4		4	TAS2R31	12	11183797	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	9470	11183797	122668098	48	6198											
GRIN2B	2904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	13828724	13828724	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agaagaattatcaccagtttCgggtgcatctggtagccatc	10	9	2	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	13828724	C	T	13828724	2	4	64	1	0	0	0	0	0	0	0	1	6838	871	31	1		1	GRIN2B	12	13828724	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	2644927	13828724	120023171	49	6199											
IPO8	10526	bcgsc.ca	37	chr12	30787155	30787155	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctcatcttcacctcTtccattatttgactgcattg	3	15	4	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	30787155	T	C	30787155	3	2	64	1	0	0	0	0	1	0	0	0	7859	1617	56	2	364	2	IPO8	12	30787155	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	16958431	30787155	103064740	50	6200											
KRT5	3852	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	52913573	52913573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgagggtcttgatctgctCgcgctcctcggtcctcaccc	11	15	3	2	rs59115483	bycluster	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	52913573	C	T	52913573	3	4	64	1	0	0	0	0	1	0	0	0	8540	893	31	1	1300	1	KRT5	12	52913573	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	22126418	52913573	80938322	51	6201											
KRT76	51350	broad.mit.edu	37	chr12	53169330	53169330	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgagcctgtggtctgctgCtggagcagttcccacttggt	13	12	1	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	53169330	C	T	53169330	2	4	64	1	0	0	0	0	0	0	0	1	8550	796	28	4		4	KRT76	12	53169330	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	255757	53169330	80682565	52	6202											
DGKA	1606	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr12	56335069	56335069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaacacccacccacttctcGtctttgtcaatcctaagagt	4	15	3	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	56335069	G	A	56335069	3	1	64	1	0	0	0	0	1	0	0	0	4502	1145	40	1	1185	1	DGKA	12	56335069	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	3165739	56335069	77516826	53	6203											
OAS3	4940	mdanderson.org	37	chr12	113376452	113376452	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcgccctggccgctgcCctgagggagcgcgggggccg	20	15	0	1	rs1859329	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	113376452	C	T	113376452	2	4	64	1	0	0	0	0	0	0	0	1	10880	610	22	3		3	OAS3	12	113376452	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	57041383	113376452	20475443	54	6204											
ING1	3621	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr13	111367954	111367954	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtggacgagttgatttgaAcgtcttcgggtcgctcggcc	16	9	1	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	111367954	A	T	111367954	3	4	64	1	0	0	0	0	1	0	0	0	7796	43	2	5	314	5	ING1	13	111367954	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10		111367954	3801924	55	6205											
OR4M1	441670	mdanderson.org	37	chr14	20248760	20248760	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggagaggaagataatttcCtttggtggatgcattgcaca	13	5	0	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	20248760	C	A	20248760	2	1	64	1	0	0	0	0	0	0	0	1	11154	668	24	5		5	OR4M1	14	20248760	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10		20248760	87100780	56	6206											
EVL	51466	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr14	100595075	100595075	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agctggggccaagctgagaaGagtccaacgggtaagagctc	15	9	0	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	100595075	G	T	100595075	3	4	64	1	0	0	0	0	1	0	0	0	5330	942	33	5	729	5	EVL	14	100595075	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	80346315	100595075	6754465	57	6207											
KIF26A	26153	mdanderson.org	37	chr14	104643721	104643721	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agccctggcggccctgtggcCggtcccagagcagccccacg	14	18	0	1	rs2487301	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	104643721	C	A	104643721	2	1	64	1	0	0	0	0	0	0	0	1	8355	639	23	5		5	KIF26A	14	104643721	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	4048646	104643721	2705819	58	6208											
C15orf43	145645	mdanderson.org	37	chr15	45253735	45253735	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacagaaataagaagaaaaAttggtagttttatttgggaa	9	3	0	3	rs77033860	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	45253735	A	T	45253735	3	4	64	1	0	0	0	0	1	0	0	0	1809	101	4	5	315	5	C15orf43	15	45253735	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10		45253735	57277657	59	6209											
CPPED1	55313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	12798816	12798816	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtgttgccaatgtcatggTtgccgctgacaaggaccagt	14	9	1	1	rs3748982	alternate_allele	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	12798816	T	A	12798816	3	1	64	1	0	0	0	0	1	0	0	0	3851	1725	60	5	572	5	CPPED1	16	12798816	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10		12798816	77555937	60	6210											
CCDC135	84229	broad.mit.edu;mdanderson.org	37	chr16	57760055	57760055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagcgcgtgtttctggtcGcggaggagcgcatccagctg	16	11	1	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	57760055	G	A	57760055	3	1	64	1	0	0	0	0	1	0	0	0	2794	1087	38	1	1880	1	CCDC135	16	57760055	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	44961239	57760055	32594698	61	6211											
LCAT	3931	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr16	67974324	67974324	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagggggaggtggtggttAtgcgctgctcctctttcagc	15	10	2	0	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	67974324	A	T	67974324	3	4	64	1	0	0	0	0	1	0	0	0	8720	449	16	5	520	5	LCAT	16	67974324	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	10214269	67974324	22380429	62	6212											
NCOR1	9611	mdanderson.org	37	chr17	16068464	16068464	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagcttcatgtttgcctccGaatgctggatcctttagaga	11	9	1	1	rs71256849		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	16068464	G	A	16068464	2	1	64	1	0	0	0	0	0	0	0	1	10314	1049	37	1		1	NCOR1	17	16068464	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10		16068464	65126746	63	6213											
CCDC144NL	339184	mdanderson.org	37	chr17	20768803	20768803	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtgatgaaccctttgCtcatgcagatgacaatactc	9	9	1	4	rs76135364	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	20768803	C	T	20768803	2	4	64	1	0	0	0	0	0	0	0	1	2804	796	28	4		4	CCDC144NL	17	20768803	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	4700339	20768803	60426407	64	6214											
CCDC144NL	339184	mdanderson.org	37	chr17	20769964	20769964	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagccacgtcatctgctcCaccgtaccacaggcgactcc	8	18	2	1	rs79395366	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	20769964	C	A	20769964	2	1	64	1	0	0	0	0	0	0	0	1	2804	581	21	5		5	CCDC144NL	17	20769964	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	1161	20769964	60425246	65	6215											
KRT34	3885	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	39535652	39535652	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagggcgttgactgtgcGtctcagctcgatgatctccg	12	13	2	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	39535652	G	A	39535652	3	1	64	1	0	0	0	0	1	0	0	0	8532	1145	40	1	367	1	KRT34	17	39535652	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	18765688	39535652	41659558	66	6216											
DSC3	1825	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr18	28604440	28604440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgaatatccatctgcaGttgacgcataagcaatcaac	7	11	2	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	28604440	G	T	28604440	3	4	64	1	0	0	0	0	1	0	0	0	4804	1029	36	5	2115	5	DSC3	18	28604440	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		28604440	49472808	67	6217											
SIN3B	23309	hgsc.bcm.edu;ucsc.edu	37	chr19	16982119	16982119	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggcagcatcgaccccacGcagtacgaggacaccctacg	12	15	0	0	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	16982119	G	A	16982119	2	1	64	1	0	0	0	0	0	0	0	1	14424	1074	38	1		1	SIN3B	19	16982119	Silent	SNP	G	TCGA-KO-8415-01A-11D-2310-10		16982119	42146864	68	6218											
MAST3	23031	broad.mit.edu;mdanderson.org	37	chr19	18245714	18245714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actggtgggccatgggcgtcGtcctctatgagtttctggtg	15	9	2	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	18245714	G	A	18245714	3	1	64	1	0	0	0	0	1	0	0	0	9403	1145	40	1	1767	1	MAST3	19	18245714	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10	1263595	18245714	40883269	69	6219											
HAPLN4	404037	mdanderson.org	37	chr19	19369435	19369435	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcaccgccgccccctgcActcccggtcccccccaggcc	8	25	1	0	rs2074295	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	19369435	A	G	19369435	2	3	64	1	0	0	0	0	0	0	0	1	7015	156	6	2		2	HAPLN4	19	19369435	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10	1123721	19369435	39759548	70	6220											
ARHGAP33	115703	broad.mit.edu	37	chr19	36278799	36278799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtccctttcgctccatgcCccccgacaggctcaatgcct	8	18	1	0	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	36278799	C	T	36278799	3	4	64	1	0	0	0	0	1	0	0	0	884	623	22	3	3414	3	ARHGAP33	19	36278799	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10	16909364	36278799	22850184	71	6221											
FBL	2091	broad.mit.edu	37	chr19	40331124	40331124	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttttcctccccgaccacgAccccggttgccaccagaatg	7	18	0	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	40331124	A	G	40331124	2	3	64	1	0	0	0	0	0	0	0	1	5745	262	10	2		2	FBL	19	40331124	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10	4052325	40331124	18797859	72	6222											
ZNF615	284370	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	52505118	52505118	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgtgcaagtttcttctccTcgttccaatttggagagtgc	10	9	2	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	52505118	T	G	52505118	2	3	64	1	0	0	0	0	0	0	0	1	18145	1538	54	5		5	ZNF615	19	52505118	Silent	SNP	T	TCGA-KO-8415-01A-11D-2310-10	12173994	52505118	6623865	73	6223											
VN1R2	317701	broad.mit.edu	37	chr19	53762250	53762250	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaagtaaaagccccgacaTacattggtctctccaatatc	6	11	1	1	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	53762250	T	C	53762250	3	2	64	1	0	0	0	0	1	0	0	0	17285	1406	49	4	624	4	VN1R2	19	53762250	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	1257132	53762250	5366733	74	6224											
ZNF628	89887	mdanderson.org	37	chr19	55994240	55994240	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgccaccgccacgtgcaCactggcgagaggccccacgc	12	19	0	1	rs12981044	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	55994240	C	T	55994240	2	4	64	1	0	0	0	0	0	0	0	1	18157	477	17	4		4	ZNF628	19	55994240	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	2231990	55994240	3134743	75	6225											
JAG1	182	broad.mit.edu	37	chr20	10629266	10629266	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgatttcattctgacagtgAcccccattcaaacaggggtt	8	10	3	3	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	10629266	A	G	10629266	2	3	64	1	0	0	0	0	0	0	0	1	7995	262	10	2		2	JAG1	20	10629266	Silent	SNP	A	TCGA-KO-8415-01A-11D-2310-10		10629266	52396254	76	6226											
CST2	1470	mdanderson.org	37	chr20	23805930	23805930	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatggttcggcccacctctaTgtcgaagaagtaattcaccc	8	12	2	1	rs199856966		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		C	23805930	T	C	23805930	3	2	64	1	0	0	0	0	1	0	0	0	4003	1464	51	4	174	4	CST2	20	23805930	Missense_Mutation	SNP	T	TCGA-KO-8415-01A-11D-2310-10	13176664	23805930	39219590	77	6227											
BAGE2	85319	mdanderson.org	37	chr21	11058230	11058230	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	actgaaatcctgaaaggtgtCggctcctgcagcacaaggat	11	10	0	2	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	11058230	C	A	11058230	2	1	64	1	0	0	0	0	0	0	0	1	1296	871	31	5		5	BAGE2	21	11058230	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10		11058230	37071665	78	6228											
KRTAP10-4	386672	mdanderson.org	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1	rs543299		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		T	45993851	C	T	45993851	2	4	64	1	0	0	0	0	0	0	0	1	8572	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-KO-8415-01A-11D-2310-10	34935621	45993851	2136044	79	6229											
SCARF2	91179	mdanderson.org	37	chr22	20780296	20780296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttggtggcggggtcaggtGgcggcggtttcctgcgctcg	20	10	1	0	rs9680797	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		A	20780296	G	A	20780296	3	1	64	1	0	0	0	0	1	0	0	0	13980	1348	47	4	634	4	SCARF2	22	20780296	Missense_Mutation	SNP	G	TCGA-KO-8415-01A-11D-2310-10		20780296	30524270	80	6230											
ARSD	414	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chrX	2827911	2827911	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accacagtagggaacacgtcCatcaggctcgtgggctctcc	11	14	2	0	novel		TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	2827911	C	G	2827911	3	3	64	1	0	0	0	0	1	0	0	0	993	594	21	5	548	5	ARSD	23	2827911	Missense_Mutation	SNP	C	TCGA-KO-8415-01A-11D-2310-10		2827911	152442649	81	6231											
PRKX	5613	mdanderson.org	37	chrX	3631167	3631167	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagtcctgcaggctgtacAcaggcggctccggcgacagc	13	14	0	0	rs3752362	byfrequency	TCGA-KO-8415-01A-11D-2310-10	TCGA-KO-8415-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebde5c33-4b0f-4c3d-bf45-52b2d54093ec	6ae02049-78de-46c7-af90-146bd04cb94e		G	3631167	A	G	3631167	3	3	64	1	0	0	0	0	1	0	0	0	12616	159	6	2	980	2	PRKX	23	3631167	Missense_Mutation	SNP	A	TCGA-KO-8415-01A-11D-2310-10	803256	3631167	151639393	82	6232											
CLCNKB	1188	broad.mit.edu;mdanderson.org	37	chr1	16383402	16383402	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctgacaaatccgccagcCccaaagtgagccggcccagc	9	17	0	2	rs6698427		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	16383402	C	T	16383402	2	4	65	1	0	0	0	0	0	0	0	1	3499	610	22	3		3	CLCNKB	1	16383402	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		16383402	232867219	1	6233											
ZMYM4	9202	ucsc.edu	37	chr1	35865108	35865108	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgacccacttaataaaggAcagggaatccaggcacgttc	9	10	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	35865108	A	G	35865108	2	3	65	1	0	0	0	0	0	0	0	1	17807	262	10	2		2	ZMYM4	1	35865108	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	19481706	35865108	213385513	2	6234											
NRD1	4898	mdanderson.org	37	chr1	52306075	52306075	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcatcttcttcttcTtcctccacctcctcttcttc	0	18	9	0	rs78724482	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	52306075	T	C	52306075	2	2	65	1	0	0	0	0	0	0	0	1	10724	1606	56	2		2	NRD1	1	52306075	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	16440967	52306075	196944546	3	6235											
PDE4DIP	9659	bcgsc.ca	37	chr1	144906195	144906195	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaccagttgcatttgcaggTcctagaagtcaaaaaataag	8	8	1	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	144906195	T	C	144906195	3	2	65	1	0	0	0	0	1	0	0	0	11722	1681	58	2	4716	2	PDE4DIP	1	144906195	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	92600120	144906195	104344426	4	6236											
NBPF14	25832	broad.mit.edu	37	chr1	148010987	148010987	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagacaacctgaaggagtTgaataacatctatccagtga	8	8	2	4	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	148010987	T	C	148010987	2	2	65	1	0	0	0	0	0	0	0	1	10273	1799	63	4		4	NBPF14	1	148010987	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	3104792	148010987	101239634	5	6237											
FMN2	56776	bcgsc.ca	37	chr1	240497469	240497469	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaggacctttttcaggccTcacagatgaagtttgaagat	9	10	2	4	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	240497469	T	C	240497469	3	2	65	1	0	0	0	0	1	0	0	0	5999	1551	54	2	4755	2	FMN2	1	240497469	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	92486482	240497469	8753152	6	6238											
KIF26B	55083	mdanderson.org	37	chr1	245851609	245851609	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagggctccagctcgccccCcggtgggaagcacacgccct	12	19	0	0	rs150834033	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	245851609	C	G	245851609	3	3	65	1	0	0	0	0	1	0	0	0	8356	623	22	5	5370	5	KIF26B	1	245851609	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	5354140	245851609	3399012	7	6239											
FBXO41	150726	mdanderson.org	37	chr2	73492614	73492614	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgcgagggggctgggAccgctctgagcccccgttgg	18	12	1	2	rs526106	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	73492614	A	T	73492614	3	4	65	1	0	0	0	0	1	0	0	0	5799	275	10	5	1303	5	FBXO41	2	73492614	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10		73492614	169706759	8	6240											
ARHGEF3	50650	bcgsc.ca	37	chr3	56789174	56789175	+	Frame_Shift_Ins	INS	-	-	GGAGC													tctcactgcggaagctaatgINSgagcgctaaacaatgagaaa					novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		GGAGC	56789175	-	GGAGC	56789174	7	5	65	1	0	1	1	0	0	0	0	0	906	1335	47	0	1402	0	ARHGEF3	3	56789174	Frame_Shift_Ins	INS	-	TCGA-KO-8416-01A-11D-2310-10		56789174	141233256	9	6241											
CD80	941	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr3	119263627	119263627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccttttgccagtagatgCgagtttgtgccagctcttca	9	11	3	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	119263627	C	T	119263627	3	4	65	1	0	0	0	0	1	0	0	0	3067	768	27	1	694	1	CD80	3	119263627	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	62474453	119263627	78758803	10	6242											
ALG1L2	644974	mdanderson.org	37	chr3	129810128	129810128	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaccgtctacgacaagccGgcatctttctttaaagaggc	10	11	3	2	rs6804080	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	129810128	G	A	129810128	2	1	65	1	0	0	0	0	0	0	0	1	518	1103	39	1		1	ALG1L2	3	129810128	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	10546501	129810128	68212302	11	6243											
YTHDC1	91746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr4	69195975	69195975	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagataacactccttgcagaTctaaatgcaagatttaattt	5	7	1	3	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	69195975	T	A	69195975	3	1	65	1	0	0	0	0	1	0	0	0	17602	1432	50	5	1047	5	YTHDC1	4	69195975	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10		69195975	121958301	12	6244											
GK2	2712	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr4	80328442	80328442	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctctgcctagtttgtaagCtactgtggtcaaaaggccat	9	10	2	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	80328442	C	A	80328442	3	1	65	1	0	0	0	0	1	0	0	0	6477	797	28	5	752	5	GK2	4	80328442	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	11132467	80328442	110825834	13	6245											
MRPS30	10884	mdanderson.org	37	chr5	44809454	44809454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcccgagcccgagcccgaAcccgaacctgaacctgcgct	11	18	0	1	rs142383960	bycluster;by1000genomes	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	44809454	A	G	44809454	2	3	65	1	0	0	0	0	0	0	0	1	9918	40	2	2		2	MRPS30	5	44809454	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10		44809454	136105806	14	6246											
MCTP1	79772	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr5	94253666	94253666	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggacaggaagagctgGcctgccgcacgtctggatgg	16	12	1	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	94253666	G	C	94253666	3	2	65	1	0	0	0	0	1	0	0	0	9477	1203	42	5	1778	5	MCTP1	5	94253666	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	49444212	94253666	86661594	15	6247											
HIST1H2BK	85236	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr6	27114569	27114569	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgggagcggacttcgctggTtccggcatgttgaaggcgaa	17	9	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	27114569	T	C	27114569	2	2	65	1	0	0	0	0	0	0	0	1	7208	1722	60	2		2	HIST1H2BK	6	27114569	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10		27114569	144000498	16	6248											
SYNE1	23345	bcgsc.ca	37	chr6	152590301	152590301	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactttactttttgttgctGgagactgctctgccgctgct	9	11	1	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	152590301	G	T	152590301	3	4	65	1	0	0	0	0	1	0	0	0	15546	1357	47	5	7964	5	SYNE1	6	152590301	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	125475732	152590301	18524766	17	6249											
BAZ1B	9031	mdanderson.org	37	chr7	72861634	72861634	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taatcttcttcctcctcctcCtcttcttcctcctcctcctc	0	21	4	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	72861634	C	T	72861634	2	4	65	1	0	0	0	0	0	0	0	1	1334	680	24	4		4	BAZ1B	7	72861634	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		72861634	86277029	18	6250											
RP1L1	94137	hgsc.bcm.edu	37	chr8	10465962	10465962	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttctgactctggctgggcCtctccttctgcctctggggc	11	15	6	1	rs111646478		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	10465962	C	A	10465962	3	1	65	1	0	0	0	0	1	0	0	0	13628	680	24	5	1560	5	RP1L1	8	10465962	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10		10465962	135898060	19	6251											
MTMR7	9108	ucsc.edu	37	chr8	17206529	17206529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccggaatttggaactccccActatgatgtgtgccgtggcc	11	12	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	17206529	A	G	17206529	3	3	65	1	0	0	0	0	1	0	0	0	10026	159	6	2	1492	2	MTMR7	8	17206529	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	6740567	17206529	129157493	20	6252											
ARFGEF1	10565	hgsc.bcm.edu	37	chr8	68112661	68112661	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttatctttagaactttagtTagaaacaaaagcagtaagtt	6	5	1	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	68112661	T	C	68112661	2	2	65	1	0	0	0	0	0	0	0	1	854	1741	61	4		4	ARFGEF1	8	68112661	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	50906132	68112661	78251361	21	6253											
MTDH	92140	ucsc.edu;bcgsc.ca	37	chr8	98736833	98736833	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttttcttttttagccaagTctgaaactagctgggaatct	7	9	3	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	98736833	T	C	98736833	3	2	65	1	0	0	0	0	1	0	0	0	9995	1667	58	2	1730	2	MTDH	8	98736833	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	30624172	98736833	47627189	22	6254											
SMARCA2	6595	mdanderson.org	37	chr9	2039815	2039815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaGcaacagcagccgcagcagca	12	15	0	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	2039815	G	A	2039815	2	1	65	1	0	0	0	0	0	0	0	1	14867	962	34	4		4	SMARCA2	9	2039815	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10		2039815	139173616	23	6255											
EPB41L4B	54566	mdanderson.org	37	chr9	112082510	112082510	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggcggcggagatgtgcaCggccgcgccgccggtgagca	19	14	0	2	rs117569740	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	112082510	C	T	112082510	3	4	65	1	0	0	0	0	1	0	0	0	5195	536	19	1	2741	1	EPB41L4B	9	112082510	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	110042695	112082510	29130921	24	6256											
UCN3	114131	broad.mit.edu	37	chr10	5415962	5415962	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggtggagccagaggcacCcggtacagatacgtgtccca	15	11	0	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	5415962	C	T	5415962	2	4	65	1	0	0	0	0	0	0	0	1	17035	610	22	3		3	UCN3	10	5415962	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		5415962	130118785	25	6257											
SLK	9748	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr10	105727558	105727558	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggagcgagaagaagaagAagcagtacgaacacgtgaag	16	5	0	5	rs137997569	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	105727558	A	C	105727558	3	2	65	1	0	0	0	0	1	0	0	0	14846	247	9	5	57	5	SLK	10	105727558	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	100311596	105727558	29807189	26	6258											
KNDC1	85442	ucsc.edu	37	chr10	135020674	135020674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacgctggggcctggagcccTgcaccctcccagtgatcgtg	13	15	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	135020674	T	C	135020674	3	2	65	1	0	0	0	0	1	0	0	0	8487	1580	55	2	3691	2	KNDC1	10	135020674	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	29293116	135020674	514073	27	6259											
MUC6	4588	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr11	1017180	1017180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtggaggaatggtgcctGttggcattgagtggatggag	19	4	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	1017180	G	A	1017180	3	1	65	1	0	0	0	0	1	0	0	0	10058	1377	48	4	1710	4	MUC6	11	1017180	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		1017180	133989336	28	6260											
MUC5B	727897	broad.mit.edu	37	chr11	1270045	1270045	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccccagtgctgaccaccAccgccaccacacctgcagcc	6	23	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	1270045	A	C	1270045	3	2	65	1	0	0	0	0	1	0	0	0	10057	159	6	5	12066	5	MUC5B	11	1270045	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	252865	1270045	133736471	29	6261											
KRTAP5-4	387267	mdanderson.org	37	chr11	1643255	1643255	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccacagccagagccacaGcccccacagccggagccaca	8	22	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	1643255	G	A	1643255	2	1	65	1	0	0	0	0	0	0	0	1	8625	958	34	4		4	KRTAP5-4	11	1643255	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	373210	1643255	133363261	30	6262											
ZDHHC13	54503	bcgsc.ca	37	chr11	19174169	19174169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattattcatatgctaaaaAcagaagccaaaatgagagcc	6	8	2	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	19174169	A	G	19174169	3	3	65	1	0	0	0	0	1	0	0	0	17708	43	2	2	841	2	ZDHHC13	11	19174169	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	17530914	19174169	115832347	31	6263											
OR1S2	219958	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	57970779	57970779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatcatgggtgtcaccacaGtgaataggacagcaccaatc	9	11	3	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	57970779	G	A	57970779	3	1	65	1	0	0	0	0	1	0	0	0	11052	1029	36	4	105	4	OR1S2	11	57970779	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	38796610	57970779	77035737	32	6264											
MAML2	84441	mdanderson.org	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0	rs61901862		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	95825407	C	T	95825407	2	4	65	1	0	0	0	0	0	0	0	1	9283	796	28	4		4	MAML2	11	95825407	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	37854628	95825407	39181109	33	6265											
TMPRSS13	84000	mdanderson.org	37	chr11	117789302	117789302	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaagtgatgccagagcCggagatgcccgggctggaga	17	9	0	4	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	117789302	C	T	117789302	2	4	65	1	0	0	0	0	0	0	0	1	16349	639	23	1		1	TMPRSS13	11	117789302	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	21963895	117789302	17217214	34	6266											
ROBO3	64221	mdanderson.org	37	chr11	124750455	124750455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctggccggagccggagtcGgagtcagagccggagccaga	17	13	1	2	rs200255001		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	124750455	G	A	124750455	3	1	65	1	0	0	0	0	1	0	0	0	13610	1116	39	1	4206	1	ROBO3	11	124750455	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	6961153	124750455	10256061	35	6267											
ARHGAP32	9743	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr11	128840231	128840231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtacagaggtcttgggcagTaggctggctcatcatctggg	16	8	4	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	128840231	T	C	128840231	3	2	65	1	0	0	0	0	1	0	0	0	883	1638	57	2	1432	2	ARHGAP32	11	128840231	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	4089776	128840231	6166285	36	6268											
CLECL1	160365	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr12	9885606	9885606	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaacagttttgatgtcagcGtagactacatctccagccat	8	11	2	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	9885606	G	A	9885606	2	1	65	1	0	0	0	0	0	0	0	1	3552	1140	40	1		1	CLECL1	12	9885606	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10		9885606	123966289	37	6269											
FMNL3	91010	broad.mit.edu	37	chr12	50045190	50045190	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcccactgtcaacaccacAgagggtgcagcaccagggag	13	13	1	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	50045190	A	T	50045190	2	4	65	1	0	0	0	0	0	0	0	1	6002	175	7	5		5	FMNL3	12	50045190	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	40159584	50045190	83806705	38	6270											
PXN	5829	broad.mit.edu	37	chr12	120662127	120662127	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcctccgacaagaacaCaggccgtttggagatgtggg	14	10	1	2	rs202176482	alternate_allele	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	120662127	C	A	120662127	3	1	65	1	0	0	0	0	1	0	0	0	12944	478	17	5	1752	5	PXN	12	120662127	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	70616937	120662127	13189768	39	6271											
CAMKK2	10645	ucsc.edu	37	chr12	121678593	121678593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaactttccacgcagggaCtgcctctcacaagagcactt	8	14	1	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	121678593	C	T	121678593	3	4	65	1	0	0	0	0	1	0	0	0	2632	565	20	4	94	4	CAMKK2	12	121678593	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	1016466	121678593	12173302	40	6272											
HOMEZ	57594	mdanderson.org	37	chr14	23744823	23744823	+	Missense_Mutation	SNP	A	A	T													tcatcatcatcatcatcatcAtcttcctcctcctcctcctc					rs3208861	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	23744823	A	T	23744823	3	4	65	1	0	0	0	0	1	0	0	0	7339	214	8	5	42	5	HOMEZ	14	23744823	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10		23744823	83604717	41	6273	168	2									
HOMEZ	57594	mdanderson.org	37	chr14	23744826	23744826	+	Silent	SNP	T	T	C													tcatcatcatcatcatcatcTtcctcctcctcctcctcctc					rs76331664	alternate_allele	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	23744826	T	C	23744826	2	2	65	1	0	0	0	0	0	0	0	1	7339	1606	56	2		2	HOMEZ	14	23744826	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	3	23744826	83604714	42	6274	168	2									
MAGEL2	54551	hgsc.bcm.edu	37	chr15	23890897	23890897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgcctgggcctgctgggGgggtagctggatttgcacgg	19	9	0	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	23890897	G	T	23890897	3	4	65	1	0	0	0	0	1	0	0	0	9266	1232	43	5	1760	5	MAGEL2	15	23890897	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		23890897	78640495	43	6275											
HERC2	8924	broad.mit.edu;mdanderson.org	37	chr15	28456246	28456246	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgacctgctttcaggatgTatagcttcaactgctggcac	9	13	2	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	28456246	T	A	28456246	3	1	65	1	0	0	0	0	1	0	0	0	7116	1638	57	5	7733	5	HERC2	15	28456246	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	4565349	28456246	74075146	44	6276											
ZFYVE19	84936	mdanderson.org	37	chr15	41099910	41099910	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggcgtgtggggcggggcAgggcagggaagggaagggcg	27	5	0	0	rs62018606		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	41099910	A	G	41099910	2	3	65	1	0	0	0	0	0	0	0	1	17770	175	7	2		2	ZFYVE19	15	41099910	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	12643664	41099910	61431482	45	6277											
C15orf59	388135	hgsc.bcm.edu;mdanderson.org	37	chr15	74032954	74032954	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagttcaaagtcgaagtcCgaggttagcttatcgatctg	10	9	2	0	rs144044826		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	74032954	C	T	74032954	2	4	65	1	0	0	0	0	0	0	0	1	1819	639	23	1		1	C15orf59	15	74032954	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	32933044	74032954	28498438	46	6278											
ADAMTS7	11173	mdanderson.org	37	chr15	79057989	79057989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccagcccacaccacttgcctCgctccagtttcccgcttgcc	6	21	0	0	rs200769684		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	79057989	C	T	79057989	3	4	65	1	0	0	0	0	1	0	0	0	271	893	31	1	820	1	ADAMTS7	15	79057989	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	5025035	79057989	23473403	47	6279											
ANPEP	290	bcgsc.ca	37	chr15	90349234	90349234	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccatgtactcgctgcggTagaagcccgccaggtcatct	10	15	2	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	90349234	T	C	90349234	3	2	65	1	0	0	0	0	1	0	0	0	710	1638	57	2	2402	2	ANPEP	15	90349234	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	11291245	90349234	12182158	48	6280											
ZNF319	57567	broad.mit.edu;hgsc.bcm.edu	37	chr16	58030679	58030679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgctgcaggtctgacgcGtacttgaagcgtttctcgca	12	12	2	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	58030679	G	A	58030679	2	1	65	1	0	0	0	0	0	0	0	1	17942	1140	40	1		1	ZNF319	16	58030679	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10		58030679	32324074	49	6281											
FHOD1	29109	bcgsc.ca	37	chr16	67273272	67273272	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatctcttcatagaagcccTccagcatctcccgctgctct	6	16	4	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	67273272	T	C	67273272	3	2	65	1	0	0	0	0	1	0	0	0	5931	1551	54	2	3291	2	FHOD1	16	67273272	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	9242593	67273272	23081481	50	6282											
FA2H	79152	mdanderson.org	37	chr16	74808425	74808425	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccacgtagtactgctccaGccagcggcgcgcgttggccg	13	16	0	0	rs929881	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	74808425	G	A	74808425	2	1	65	1	0	0	0	0	0	0	0	1	5395	962	34	4		4	FA2H	16	74808425	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	7535153	74808425	15546328	51	6283											
ACSF3	197322	mdanderson.org	37	chr16	89167138	89167138	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcctgggctgcgccttgGcgtcctgccggctggcgcct	17	16	0	0	rs11547019	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	89167138	G	C	89167138	3	2	65	1	0	0	0	0	1	0	0	0	176	1203	42	5	51	5	ACSF3	16	89167138	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	14358713	89167138	1187615	52	6284											
USP6	9098	ucsc.edu;mdanderson.org	37	chr17	5037195	5037195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctacagatcatgaaggagaGgggcaagaggtcatctgaac	13	8	3	5	rs74900103		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	5037195	G	A	5037195	3	1	65	1	0	0	0	0	1	0	0	0	17192	1000	35	4	420	4	USP6	17	5037195	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		5037195	76158015	53	6285											
TP53	7157	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr17	7578208	7578208	+	Missense_Mutation	SNP	T	T	A													catagggcaccaccacactaTgtcgaaaagtgtttctgtca					novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	7578208	T	A	7578208	3	1	65	1	0	0	0	0	1	0	0	0	16486	1464	51	5	653	5	TP53	17	7578208	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	2541013	7578208	73617002	54	6286	169	2									
TP53	7157	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A													gggcaccaccacactatgtcGaaaagtgtttctgtcatcca					novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	7578212	G	A	7578212	4	1	65	1	0	0	0	0	0	1	0	0	16486	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	4	7578212	73616998	55	6287	169	2									
MYO15A	51168	ucsc.edu	37	chr17	18057479	18057479	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacagctacagccatcctgTgcagcttgacctcctgttcc	9	15	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	18057479	T	C	18057479	3	2	65	1	0	0	0	0	1	0	0	0	10141	1696	59	2	8289	2	MYO15A	17	18057479	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	10479267	18057479	63137731	56	6288											
ENOSF1	55556	mdanderson.org	37	chr18	712568	712568	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtcccggaccgagagccggGagatcctgccgcgcaccatg	14	16	0	2	rs3786349	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	712568	G	A	712568	3	1	65	1	0	0	0	0	1	0	0	0	5164	1174	41	3	1519	3	ENOSF1	18	712568	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		712568	77364680	57	6289											
CTDP1	9150	broad.mit.edu	37	chr18	77477838	77477838	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctgcggcctttcccgacCgggagggtgtgccccccacc	13	19	0	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	77477838	C	T	77477838	3	4	65	1	0	0	0	0	1	0	0	0	4033	643	23	1	2277	1	CTDP1	18	77477838	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	76765270	77477838	599410	58	6290											
SBNO2	22904	ucsc.edu;bcgsc.ca	37	chr19	1116843	1116843	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttactcagcggccgagacgAagcagttgaggtgcccatcg	13	12	1	2	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	1116843	A	G	1116843	3	3	65	1	0	0	0	0	1	0	0	0	13959	246	9	4	2381	4	SBNO2	19	1116843	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10		1116843	58012140	59	6291											
S1PR2	9294	mdanderson.org	37	chr19	10334663	10334663	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacccccacccccggccTccagcactgcagcggccgaa	9	21	0	0	rs2116942	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	10334663	T	G	10334663	2	3	65	1	0	0	0	0	0	0	0	1	13889	1550	54	5		5	S1PR2	19	10334663	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10	9217820	10334663	48794320	60	6292											
OR10H2	26538	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	15839010	15839010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccaccgtctggagcgagCgcagcctccacacgcccatg	12	17	1	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	15839010	C	T	15839010	3	4	65	1	0	0	0	0	1	0	0	0	10985	768	27	1	159	1	OR10H2	19	15839010	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10	5504347	15839010	43289973	61	6293											
ZNF528	84436	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	52919685	52919685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacaaatgtaatcaatgtgGcaaggtctttaatcaagcat	7	6	3	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	52919685	G	T	52919685	3	4	65	1	0	0	0	0	1	0	0	0	18074	1203	42	5	1594	5	ZNF528	19	52919685	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10	37080675	52919685	6209298	62	6294											
TGM3	7053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr20	2306576	2306576	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggatggcaggtgttggatgcTaccccgcaggaaagaagcca	15	9	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	2306576	T	C	2306576	2	2	65	1	0	0	0	0	0	0	0	1	15935	1509	53	2		2	TGM3	20	2306576	Silent	SNP	T	TCGA-KO-8416-01A-11D-2310-10		2306576	60718944	63	6295											
GDF5	8200	broad.mit.edu	37	chr20	34021909	34021909	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtgggagcgcaatgggAactcgcacagcccctcgcag	14	14	0	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		G	34021909	A	G	34021909	3	3	65	1	0	0	0	0	1	0	0	0	6372	246	9	4	205	4	GDF5	20	34021909	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	31715333	34021909	29003611	64	6296											
USP25	29761	broad.mit.edu	37	chr21	17150316	17150316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagggcattcagggagactgGaataactgatgaggaacaag	14	6	1	3	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	17150316	G	A	17150316	3	1	65	1	0	0	0	0	1	0	0	0	17162	1174	41	3	376	3	USP25	21	17150316	Missense_Mutation	SNP	G	TCGA-KO-8416-01A-11D-2310-10		17150316	30979579	65	6297											
TRIOBP	11078	mdanderson.org	37	chr22	38122448	38122448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggcgcagtgcagcagCgggggccgcacccacagccc	14	19	0	0	rs739137	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	38122448	C	T	38122448	2	4	65	1	0	0	0	0	0	0	0	1	16658	767	27	1		1	TRIOBP	22	38122448	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10		38122448	13182118	66	6298											
CD99	4267	broad.mit.edu	37	chrX	2658825	2658825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgtctcccacagttcagCgtactcttttagagaaatag	7	11	4	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	2658825	C	T	2658825	3	4	65	1	0	0	0	0	1	0	0	0	3079	768	27	1	576	1	CD99	23	2658825	Missense_Mutation	SNP	C	TCGA-KO-8416-01A-11D-2310-10		2658825	152611735	67	6299											
SHROOM2	357	broad.mit.edu	37	chrX	9900608	9900608	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcctcggcaggcccttcccAacgccatcccctgcgtccct	8	21	0	0	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	9900608	A	C	9900608	2	2	65	1	0	0	0	0	0	0	0	1	14392	117	5	5		5	SHROOM2	23	9900608	Silent	SNP	A	TCGA-KO-8416-01A-11D-2310-10	7241783	9900608	145369952	68	6300											
DCAF8L2	347442	mdanderson.org	37	chrX	27765417	27765417	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagaggaggaggaggaggaGgaggaggaggaggaggagga	26	0	0	1	novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	27765417	G	A	27765417	2	1	65	1	0	0	0	0	0	0	0	1	4310	991	35	4		4	DCAF8L2	23	27765417	Silent	SNP	G	TCGA-KO-8416-01A-11D-2310-10	17864809	27765417	127505143	69	6301											
TAF7L	54457	mdanderson.org	37	chrX	100531437	100531437	+	Silent	SNP	C	C	T													tcctcatcctcatcctcatcCtcatcttcatcatcctcatc					rs148266047	byfrequency	TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		T	100531437	C	T	100531437	2	4	65	1	0	0	0	0	0	0	0	1	15634	680	24	4		4	TAF7L	23	100531437	Silent	SNP	C	TCGA-KO-8416-01A-11D-2310-10	72766020	100531437	54739123	70	6302	170	3									
TAF7L	54457	mdanderson.org	37	chrX	100531443	100531443	+	Missense_Mutation	SNP	T	T	A													tcctcatcctcatcctcatcTtcatcatcctcatcctcatc					rs201479972		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		A	100531443	T	A	100531443	3	1	65	1	0	0	0	0	1	0	0	0	15634	1606	56	5	381	5	TAF7L	23	100531443	Missense_Mutation	SNP	T	TCGA-KO-8416-01A-11D-2310-10	6	100531443	54739117	71	6303	170	3									
TAF7L	54457	mdanderson.org	37	chrX	100531446	100531446	+	Missense_Mutation	SNP	A	A	C													tcatcctcatcctcatcttcAtcatcctcatcctcatcatc					rs200145772		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		C	100531446	A	C	100531446	3	2	65	1	0	0	0	0	1	0	0	0	15634	214	8	5	384	5	TAF7L	23	100531446	Missense_Mutation	SNP	A	TCGA-KO-8416-01A-11D-2310-10	3	100531446	54739114	72	6304	170	3									
SLC6A14	11254	hgsc.bcm.edu	37	chrX	115572265	115572265	+	Frame_Shift_Del	DEL	G	G	-													ggattcttccattgtttcaaGgttggtattaaagcgttttc					novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		-	115572265	G	-	115572265	7	5	65	1	0	1	0	1	0	0	0	0	14775	1014	35	0	356	0	SLC6A14	23	115572265	Frame_Shift_Del	DEL	G	TCGA-KO-8416-01A-11D-2310-10	15040819	115572265	39698295	73	6305	171	2									
SLC6A14	11254	bcgsc.ca	37	chrX	115572266	115572266	+	Splice_Site	DEL	G	G	-													gattcttccattgtttcaagGttggtattaaagcgttttct					novel		TCGA-KO-8416-01A-11D-2310-10	TCGA-KO-8416-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9d29543e-8601-4fd0-8e76-3df3de465cab	539a0194-ea33-4213-b815-b8dbbc07a276		-	115572266	G	-	115572266	8	5	65	1	0	1	0	1	0	0	1	0	14775	1275	44	0	357	0	SLC6A14	23	115572266	Splice_Site	DEL	G	TCGA-KO-8416-01A-11D-2310-10	1	115572266	39698294	74	6306	171	2									
NOC2L	26155	ucsc.edu	37	chr1	880468	880468	+	Silent	SNP	C	C	T													ctgctgtcctcctcgccctcCtcctcgtcctcttcatcgtc					novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	880468	C	T	880468	2	4	66	1	0	0	0	0	0	0	0	1	10592	680	24	4		4	NOC2L	1	880468	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10		880468	248370153	1	6307	172	2									
NOC2L	26155	ucsc.edu	37	chr1	880475	880475	+	Missense_Mutation	SNP	T	T	C													cctcctcgccctcctcctcgTcctcttcatcgtcttccacc					novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	880475	T	C	880475	3	2	66	1	0	0	0	0	1	0	0	0	10592	1667	58	2	152	2	NOC2L	1	880475	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	7	880475	248370146	2	6308	172	2									
AJAP1	55966	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr1	4772576	4772576	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacaaacacggaagacaactGtggccgccaccaccaccacc	7	17	0	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	4772576	G	C	4772576	3	2	66	1	0	0	0	0	1	0	0	0	438	1377	48	5	652	5	AJAP1	1	4772576	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	3892101	4772576	244478045	3	6309											
TRIM63	84676	mdanderson.org;bcgsc.ca	37	chr1	26385003	26385003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgatgaagctaagcttttTctcctgctcctgcgtgatcc	8	13	1	2	rs2275950	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	26385003	T	C	26385003	3	2	66	1	0	0	0	0	1	0	0	0	16643	1792	62	4	372	4	TRIM63	1	26385003	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	21612427	26385003	222865618	4	6310											
HCRTR1	3061	ucsc.edu;bcgsc.ca	37	chr1	32084861	32084861	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcagagagccgtcccctgTgcctccagactatgaagatg	11	13	0	4	rs11806980	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	32084861	T	C	32084861	3	2	66	1	0	0	0	0	1	0	0	0	7059	1696	59	2	70	2	HCRTR1	1	32084861	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	5699858	32084861	217165760	5	6311											
GJB5	2709	broad.mit.edu	37	chr1	35223027	35223027	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctggtcttcatcttccgCgtgctggtgtacctggtgac	11	12	4	1	rs61750010	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	35223027	C	T	35223027	2	4	66	1	0	0	0	0	0	0	0	1	6467	755	27	1		1	GJB5	1	35223027	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	3138166	35223027	214027594	6	6312											
FHL3	2275	broad.mit.edu	37	chr1	38463083	38463083	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagccctggcttagggCcctgcctggctacagccctg	13	16	0	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	38463083	C	A	38463083	2	1	66	1	0	0	0	0	0	0	0	1	5929	726	26	5		5	FHL3	1	38463083	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	3240056	38463083	210787538	7	6313											
ANP32E	81611	ucsc.edu;mdanderson.org	37	chr1	150199042	150199042	+	Missense_Mutation	SNP	C	C	A													tcatcctcatcctcatcctcCtcttcctcttcctcctcctc					rs28594165		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	150199042	C	A	150199042	3	1	66	1	0	0	0	0	1	0	0	0	709	680	24	5	239	5	ANP32E	1	150199042	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	111735959	150199042	99051579	8	6314	173	2									
ANP32E	81611	ucsc.edu;mdanderson.org	37	chr1	150199045	150199045	+	Silent	SNP	T	T	C													tcctcatcctcatcctcctcTtcctcttcctcctcctcttc					rs28460085	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	150199045	T	C	150199045	2	2	66	1	0	0	0	0	0	0	0	1	709	1606	56	2		2	ANP32E	1	150199045	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	3	150199045	99051576	9	6315	173	2									
S100A7A	338324	bcgsc.ca	37	chr1	153391729	153391729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctgggagacatagccGcagactaccacaagcagagc	11	13	0	3	rs56232841		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	153391729	G	A	153391729	3	1	66	1	0	0	0	0	1	0	0	0	13879	1087	38	1	256	1	S100A7A	1	153391729	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	3192684	153391729	95858892	10	6316											
RHBG	57127	bcgsc.ca	37	chr1	156351699	156351699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagctggcttcttggctGggactgtctccacgctgggg	16	11	2	0	rs3748569	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	156351699	G	A	156351699	3	1	66	1	0	0	0	0	1	0	0	0	13417	1348	47	4	965	4	RHBG	1	156351699	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	2959970	156351699	92898922	11	6317											
ANKRD45	339416	ucsc.edu	37	chr1	173596257	173596257	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtgtcagtaacagctaAagagacttttgcaatatatt	7	6	2	1	rs12059066	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	173596257	A	T	173596257	3	4	66	1	0	0	0	0	1	0	0	0	673	11	1	5	274	5	ANKRD45	1	173596257	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	17244558	173596257	75654364	12	6318											
CACYBP	27101	hgsc.bcm.edu	37	chr1	174975972	174975972	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgcaggtgcatttcacAgagaggtgagttctcattat	11	6	2	2	rs1802325	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	174975972	A	G	174975972	2	3	66	1	0	0	0	0	0	0	0	1	2589	175	7	2		2	CACYBP	1	174975972	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10	1379715	174975972	74274649	13	6319											
PROX1	5629	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	214171103	214171103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacaccgccaaccagcgcCtgcagtgctttggcgacgtc	10	17	0	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	214171103	C	T	214171103	2	4	66	1	0	0	0	0	0	0	0	1	12649	680	24	4		4	PROX1	1	214171103	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	39195131	214171103	35079518	14	6320											
ATL2	64225	bcgsc.ca	37	chr2	38525660	38525660	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tatcgccacttccttgagatCcaagtgttttcgctccagat	7	12	0	2	rs7582826	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	38525660	C	G	38525660	3	3	66	1	0	0	0	0	1	0	0	0	1111	855	30	5	613	5	ATL2	2	38525660	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10		38525660	204673713	15	6321											
CLEC4F	165530	bcgsc.ca	37	chr2	71043461	71043461	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtatctgtctggtccagaCggccatttgctttttgggtc	12	9	2	1	rs722896	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	71043461	C	T	71043461	3	4	66	1	0	0	0	0	1	0	0	0	3545	536	19	1	733	1	CLEC4F	2	71043461	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	32517801	71043461	172155912	16	6322											
LBX2	85474	ucsc.edu;bcgsc.ca	37	chr2	74725178	74725178	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctgcacaggacttccgggGacaacgcgcgtagcgaggcg	16	12	0	0	rs17009998	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	74725178	G	A	74725178	3	1	66	1	0	0	0	0	1	0	0	0	8716	1174	41	3	127	3	LBX2	2	74725178	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	3681717	74725178	168474195	17	6323											
GPD2	2820	bcgsc.ca	37	chr2	157406249	157406249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccagacagggaaagtgcGtgtgagcggcgcacggtgca	16	12	0	2	rs2116665	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	157406249	G	A	157406249	3	1	66	1	0	0	0	0	1	0	0	0	6663	1145	40	1	813	1	GPD2	2	157406249	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	82681071	157406249	85793124	18	6324											
PPIG	9360	bcgsc.ca	37	chr2	170493677	170493677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcagagagagaagaaagtCaaagcagaaacaaagacaaa	10	6	2	5	rs78054206	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	170493677	C	G	170493677	3	3	66	1	0	0	0	0	1	0	0	0	12409	827	29	5	1955	5	PPIG	2	170493677	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	13087428	170493677	72705696	19	6325											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	179613962	179613962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatttctttcttaatagtgaCatcactgaaatcatcaacaa	3	8	5	2	rs72648903	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	179613962	C	T	179613962	3	4	66	1	0	0	0	0	1	0	0	0	16841	478	17	4	97132	4	TTN	2	179613962	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	9120285	179613962	63585411	20	6326											
C2orf88	84281	bcgsc.ca	37	chr2	191064753	191064753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacctccagggaccaataCtgtgatcttggaatatgcac	10	10	1	1	rs6753459	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	191064753	C	T	191064753	3	4	66	1	0	0	0	0	1	0	0	0	2222	565	20	4	169	4	C2orf88	2	191064753	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	11450791	191064753	52134620	21	6327											
COL4A4	1286	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	227924228	227924228	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccaaatgcagggtctcccGggattcctttctgaccattc	9	13	2	1	rs36121515	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	227924228	G	A	227924228	3	1	66	1	0	0	0	0	1	0	0	0	3722	1116	39	1	2880	1	COL4A4	2	227924228	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	36859475	227924228	15275145	22	6328											
UGT1A9	54600	broad.mit.edu;hgsc.bcm.edu	37	chr2	234581245	234581245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacatttattatgccaccGttttttcaaaaatgccctag	6	9	1	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	234581245	G	A	234581245	3	1	66	1	0	0	0	0	1	0	0	0	17058	1145	40	1	667	1	UGT1A9	2	234581245	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	6657017	234581245	8618128	23	6329											
STK25	10494	broad.mit.edu;bcgsc.ca	37	chr2	242437048	242437048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctctccgaagacgggccGgaccagcgtggacaggcact	13	15	1	1	rs140408761		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	242437048	G	A	242437048	3	1	66	1	0	0	0	0	1	0	0	0	15394	1115	39	1	205	1	STK25	2	242437048	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	7855803	242437048	762325	24	6330											
IMPDH2	3615	hgsc.bcm.edu	37	chr3	49065314	49065314	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acgcgatccttggggctgagGaccacagggtctgtgatgaa	15	9	1	3	rs139765703		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	49065314	G	A	49065314	2	1	66	1	0	0	0	0	0	0	0	1	7788	1161	41	3		3	IMPDH2	3	49065314	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10		49065314	148957116	25	6331											
LPP	4026	bcgsc.ca	37	chr3	188327555	188327555	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accagaaccctcctgggatgTatccagtcactggtcccaag	9	14	1	1	rs7645635	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	188327555	T	C	188327555	3	2	66	1	0	0	0	0	1	0	0	0	8995	1638	57	2	1050	2	LPP	3	188327555	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	139262241	188327555	9694875	26	6332											
MUC4	4585	mdanderson.org	37	chr3	195511836	195511836	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaggaagaggggtggcCtgacctgtggatgctgagga	19	6	0	4	rs75072939	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	195511836	C	G	195511836	3	3	66	1	0	0	0	0	1	0	0	0	10056	680	24	5		5	MUC4	3	195511836	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	7184281	195511836	2510594	27	6333											
POLN	353497	mdanderson.org	37	chr4	2175733	2175733	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttgttcacctgaatggcAtggctttccatcactgtgat	8	10	3	2	rs2022302	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	2175733	A	G	2175733	2	3	66	1	0	0	0	0	0	0	0	1	12287	214	8	4		4	POLN	4	2175733	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		2175733	188978543	28	6334											
SLIT2	9353	mdanderson.org	37	chr4	20535317	20535317	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcagcataagatgttcaaggGattggaaagcctcaaaactt	10	7	2	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	20535317	G	C	20535317	3	2	66	1	0	0	0	0	1	0	0	0	14838	1174	41	5	1881	5	SLIT2	4	20535317	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	18359584	20535317	170618959	29	6335											
BBS12	166379	broad.mit.edu;mdanderson.org	37	chr4	123663688	123663688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagataacaacacatcacGaactctgaaaaacagcctgc	6	12	2	2	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	123663688	G	A	123663688	3	1	66	1	0	0	0	0	1	0	0	0	1341	1058	37	1	643	1	BBS12	4	123663688	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	103128371	123663688	67490588	30	6336											
HCN1	348980	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	45396746	45396746	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggcttgggctccataccCaatgcacagcatgtgactca	11	12	1	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	45396746	C	G	45396746	3	3	66	1	0	0	0	0	1	0	0	0	7054	594	21	5	1614	5	HCN1	5	45396746	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10		45396746	135518514	31	6337											
CATSPER3	347732	bcgsc.ca	37	chr5	134343766	134343766	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttggatctccagacaaTggtgaccatgataactgggg	12	8	1	3	rs3896260	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	134343766	T	G	134343766	3	3	66	1	0	0	0	0	1	0	0	0	2714	1461	51	5	626	5	CATSPER3	5	134343766	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	88947020	134343766	46571494	32	6338											
PCDHA6	56142	mdanderson.org	37	chr5	140207965	140207965	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgaccgcgaggagctgtgcGggcggagcgcggagtgcagc	20	11	0	0	rs61730626	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	140207965	G	C	140207965	3	2	66	1	0	0	0	0	1	0	0	0	11607	1116	39	5	291	5	PCDHA6	5	140207965	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	5864199	140207965	40707295	33	6339											
PCDH12	51294	hgsc.bcm.edu	37	chr5	141324954	141324954	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctgaggtatgttcacaggcAcctgctgctgctgctgctgc	12	12	2	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	141324954	A	T	141324954	3	4	66	1	0	0	0	0	1	0	0	0	11589	159	6	5	11	5	PCDH12	5	141324954	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	1116989	141324954	39590306	34	6340											
SOX30	11063	broad.mit.edu	37	chr5	157078493	157078493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgggcttttgcctgccccGccttgcatcgagtctctcat	10	16	2	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	157078493	G	A	157078493	2	1	66	1	0	0	0	0	0	0	0	1	15050	1074	38	1		1	SOX30	5	157078493	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	15753539	157078493	23836767	35	6341											
CDHR2	54825	mdanderson.org	37	chr5	175992370	175992370	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatggcccagctatggcTgtcctgcttcctccttcctg	10	14	0	1	rs114786529	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	175992370	T	C	175992370	3	2	66	1	0	0	0	0	1	0	0	0	3148	1580	55	2	19	2	CDHR2	5	175992370	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	18913877	175992370	4922890	36	6342											
ADAMTS2	9509	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr5	178580530	178580530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccaggccgaagtcaaagcGgcattgctcgttcatggagt	13	11	2	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	178580530	G	A	178580530	3	1	66	1	0	0	0	0	1	0	0	0	265	1116	39	1	2289	1	ADAMTS2	5	178580530	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	2588160	178580530	2334730	37	6343											
HLA-C	3107	mdanderson.org	37	chr6	31238859	31238859	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccctggtacctgcgcgctGcagcgtctccttcccgttct	10	18	2	0	rs41555616		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	31238859	G	C	31238859	3	2	66	1	0	0	0	0	1	0	0	0	7255	1328	46	5	514	5	HLA-C	6	31238859	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10		31238859	139876208	38	6344											
HLA-DRB1	3123	mdanderson.org	37	chr6	32548534	32548534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctcacctttctgattcCtgaagtagatgaacagcccg	8	13	2	4	rs71547382		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	32548534	C	T	32548534	3	4	66	1	0	0	0	0	1	0	0	0	7266	681	24	4	60	4	HLA-DRB1	6	32548534	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	1309675	32548534	138566533	39	6345											
CAPN11	11131	hgsc.bcm.edu;bcgsc.ca	37	chr6	44137081	44137081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagccggctcaaggccaaggGcgtgggccagcacgacaacg	15	14	1	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	44137081	G	T	44137081	3	4	66	1	0	0	0	0	1	0	0	0	2649	1203	42	5	162	5	CAPN11	6	44137081	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	11588547	44137081	126977986	40	6346											
ANKMY2	57037	ucsc.edu	37	chr7	16642116	16642116	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtgtgttttctggcaggTttgatcacaatatattacct	8	8	2	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	16642116	T	G	16642116	3	3	66	1	0	0	0	0	1	0	0	0	635	1725	60	5	303	5	ANKMY2	7	16642116	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		16642116	142496547	41	6347											
PPP1R9A	55607	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr7	94827677	94827677	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acagatttgttattgggcggGaaaaaccaggacaagtgagc	13	6	0	2	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	94827677	G	A	94827677	3	1	66	1	0	0	0	0	1	0	0	0	12463	1175	41	3	1789	3	PPP1R9A	7	94827677	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	78185561	94827677	64310986	42	6348											
DEFA6	1671	hgsc.bcm.edu	37	chr8	6783459	6783459	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggcatcagcctcataAgcttttgcctgcagtggatc	10	12	2	0	rs13439322	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	6783459	A	C	6783459	2	2	66	1	0	0	0	0	0	0	0	1	4425	59	3	5		5	DEFA6	8	6783459	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		6783459	139580563	43	6349											
EBF2	64641	bcgsc.ca	37	chr8	25708131	25708131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaatccatttccattgcCgctggagcaggcaggtgaag	12	10	1	2	rs17054477	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	25708131	C	T	25708131	3	4	66	1	0	0	0	0	1	0	0	0	4918	652	23	1	60	1	EBF2	8	25708131	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	18924672	25708131	120655891	44	6350											
PCMTD1	115294	mdanderson.org	37	chr8	52733214	52733214	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcatctcatcatttatgaaAtttctaagtgtgcgtcgaat	7	7	3	1	rs200377849		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	52733214	A	C	52733214	3	2	66	1	0	0	0	0	1	0	0	0	11665	98	4	5	306	5	PCMTD1	8	52733214	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	27025083	52733214	93630808	45	6351											
C8orf47	203111	hgsc.bcm.edu	37	chr8	99102105	99102105	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttatgaatgatccattccAtaaaactcctgaaggtccag	7	9	0	3	rs11994440	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	99102105	A	G	99102105	3	3	66	1	0	0	0	0	1	0	0	0	2456	217	8	4	866	4	C8orf47	8	99102105	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	46368891	99102105	47261917	46	6352											
COL22A1	169044	hgsc.bcm.edu;ucsc.edu	37	chr8	139606435	139606435	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atctgggccaggaggtaggcGagtctggctgtaaagtagaa	16	6	2	1	rs115499018	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	139606435	G	A	139606435	2	1	66	1	0	0	0	0	0	0	0	1	3710	1045	37	1		1	COL22A1	8	139606435	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	40504330	139606435	6757587	47	6353											
DENND3	22898	ucsc.edu	37	chr8	142204326	142204326	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaagtcgccatttggaaaggCgaataaacgtggctgagtct	12	7	1	1	rs1045248	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	142204326	C	G	142204326	2	3	66	1	0	0	0	0	0	0	0	1	4469	755	27	5		5	DENND3	8	142204326	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	2597891	142204326	4159696	48	6354											
ZNF658	26149	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chr9	40774999	40774999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagaggtttttcttgtttTtcccggatccctttgatgtg	9	9	1	2	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	40774999	T	A	40774999	3	1	66	1	0	0	0	0	1	0	0	0	18174	1838	64	5	2907	5	ZNF658	9	40774999	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		40774999	100438432	49	6355											
PPP6C	5537	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr9	127915854	127915854	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaagccaacctgctcctcgGggactgatagcccaggtatc	10	13	0	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	127915854	G	A	127915854	2	1	66	1	0	0	0	0	0	0	0	1	12492	1219	43	3		3	PPP6C	9	127915854	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	87140855	127915854	13297577	50	6356											
ZBTB43	23099	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr9	129595572	129595572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagggcatggatgtgcacGcgacctacgacgagcaccag	15	12	0	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	129595572	G	A	129595572	3	1	66	1	0	0	0	0	1	0	0	0	17649	1087	38	1	786	1	ZBTB43	9	129595572	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1679718	129595572	11617859	51	6357											
TDRD1	56165	hgsc.bcm.edu	37	chr10	115987678	115987678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcttttagaaaagatgtAtaggatgaattgctgctgca	11	4	0	3	rs34112549	bycluster;byfrequency;by1000genomes	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	115987678	A	G	115987678	3	3	66	1	0	0	0	0	1	0	0	0	15834	449	16	4	3503	4	TDRD1	10	115987678	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10		115987678	19547069	52	6358											
OR51I2	390064	hgsc.bcm.edu	37	chr11	5475431	5475431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaacgcctcaaagctcTcaacacatgtgtgtcacata	8	11	3	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	5475431	T	A	5475431	3	1	66	1	0	0	0	0	1	0	0	0	11180	1551	54	5	715	5	OR51I2	11	5475431	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		5475431	129531085	53	6359											
DNHD1	144132	bcgsc.ca	37	chr11	6524072	6524072	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gacttccttcctggatagccAggtgatgactgctctgaaga	11	10	1	4	rs11605196	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	6524072	A	C	6524072	3	2	66	1	0	0	0	0	1	0	0	0	4705	188	7	5	842	5	DNHD1	11	6524072	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	1048641	6524072	128482444	54	6360											
PHF21A	51317	ucsc.edu	37	chr11	46001380	46001380	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggtggtactgctgctgTtgttgtagttgctgtagtgg	17	4	0	0	rs151038480		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	46001380	T	C	46001380	2	2	66	1	0	0	0	0	0	0	0	1	11913	1722	60	2		2	PHF21A	11	46001380	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	39477308	46001380	89005136	55	6361											
CARD17	440068	mdanderson.org;bcgsc.ca	37	chr11	104971257	104971257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgctgagagtcccagcGtccctgccaggtgactgtct	11	14	1	2	rs12806837	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	104971257	G	A	104971257	3	1	66	1	0	0	0	0	1	0	0	0	2673	1145	40	1	83	1	CARD17	11	104971257	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	58969877	104971257	30035259	56	6362											
PRB1	5542	mdanderson.org	37	chr12	11508460	11508460	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgagctcagggccagcaAggccactgacagcagaatca	12	12	2	3	rs78738636		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	11508460	A	G	11508460	2	3	66	1	0	0	0	0	0	0	0	1	12531	69	3	2		2	PRB1	12	11508460	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		11508460	122343435	57	6363											
PRB2	653247	mdanderson.org	37	chr12	11546625	11546625	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggtggaggaccttgAggctggttgcctccttgtgg	19	7	0	1	rs200564286		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	11546625	A	G	11546625	2	3	66	1	0	0	0	0	0	0	0	1	12532	291	11	2		2	PRB2	12	11546625	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10	38165	11546625	122305270	58	6364											
IRS2	8660	ucsc.edu	37	chr13	110435914	110435914	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctccaggatgcgccccacGggggagctcatgagcacgta	13	14	1	1	rs12853546	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	110435914	G	A	110435914	2	1	66	1	0	0	0	0	0	0	0	1	7902	1103	39	1		1	IRS2	13	110435914	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10		110435914	4733964	59	6365											
DAAM1	23002	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr14	59793702	59793702	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagaacaagcggaaaaaatGagaaaaggtaaataatgagg	11	2	0	3	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	59793702	G	T	59793702	3	4	66	1	0	0	0	0	1	0	0	0	4247	1290	45	5	1407	5	DAAM1	14	59793702	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10		59793702	47555838	60	6366											
ERH	2079	bcgsc.ca	37	chr14	69861593	69861593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcataagttctgccttctgGcctcttggtaggctgtacca	10	11	3	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	69861593	G	T	69861593	3	4	66	1	0	0	0	0	1	0	0	0	5265	1203	42	5	286	5	ERH	14	69861593	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	10067891	69861593	37487947	61	6367											
DCAF4	26094	mdanderson.org	37	chr14	73422350	73422350	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catgattcagcagtgacctcTgtgcggatcctccaagatga	10	11	2	4	rs2806034	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	73422350	T	G	73422350	2	3	66	1	0	0	0	0	0	0	0	1	4302	1567	55	5		5	DCAF4	14	73422350	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	3560757	73422350	33927190	62	6368											
YLPM1	56252	broad.mit.edu;hgsc.bcm.edu;bcgsc.ca	37	chr14	75265325	75265325	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggggtgcagctggcagcCgagaaaggggaccacctcgg	17	11	0	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	75265325	C	T	75265325	4	4	66	1	0	0	0	0	0	1	0	0	17592	644	23	1	3343	1	YLPM1	14	75265325	Nonsense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	1842975	75265325	32084215	63	6369											
DISP2	85455	mdanderson.org	37	chr15	40660192	40660192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcatgggcacggctgtgCtggtgcacctggcgctcacg	14	13	3	0	rs8040755	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	40660192	C	T	40660192	2	4	66	1	0	0	0	0	0	0	0	1	4577	796	28	4		4	DISP2	15	40660192	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10		40660192	61871200	64	6370											
LIPC	3990	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	chr15	58837951	58837951	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccattagggctggatgcCgcgggacctttgtttgaggg	15	9	0	1	rs149322349		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	58837951	C	T	58837951	2	4	66	1	0	0	0	0	0	0	0	1	8884	639	23	1		1	LIPC	15	58837951	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	18177759	58837951	43693441	65	6371											
CYP1A2	1544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	chr15	75042327	75042327	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagatccgcattggctccaCgcccgtgctggtgctgagcc	13	15	0	2	rs138652540		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	75042327	C	T	75042327	3	4	66	1	0	0	0	0	1	0	0	0	4181	536	19	1	250	1	CYP1A2	15	75042327	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	16204376	75042327	27489065	66	6372											
RBBP6	5930	mdanderson.org	37	chr16	24583715	24583715	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaagaagaacaaagataaAgagaaggagaaggagaaaga	12	2	1	7	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	24583715	A	G	24583715	2	3	66	1	0	0	0	0	0	0	0	1	13195	69	3	2		2	RBBP6	16	24583715	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10		24583715	65771038	67	6373											
SPAG7	9552	mdanderson.org	37	chr17	4864114	4864114	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccactttctgttgtttctcTtgctcttgtagtttcttcag	6	10	5	0	rs61749470	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	4864114	T	C	4864114	2	2	66	1	0	0	0	0	0	0	0	1	15083	1606	56	2		2	SPAG7	17	4864114	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10		4864114	76331096	68	6374											
XAF1	54739	bcgsc.ca	37	chr17	6663894	6663894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacagagatgtctgtcGcagtgaacaggcccagctcg	12	13	1	2	rs2271232	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	6663894	G	A	6663894	3	1	66	1	0	0	0	0	1	0	0	0	17525	1087	38	1	409	1	XAF1	17	6663894	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1799780	6663894	74531316	69	6375											
MYH4	4622	bcgsc.ca	37	chr17	10348354	10348354	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgccagctgctcagcctcaTccagacggagctgcagatcc	11	16	2	2	rs2277649	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	10348354	T	C	10348354	3	2	66	1	0	0	0	0	1	0	0	0	10115	1435	50	4	430	4	MYH4	17	10348354	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	3684460	10348354	70846856	70	6376											
ELAC2	60528	broad.mit.edu	37	chr17	12898343	12898343	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tccactgcaggactggagatCtcagccccttcctgaaggca	10	14	1	2	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	12898343	C	T	12898343	2	4	66	1	0	0	0	0	0	0	0	1	5086	912	32	4		4	ELAC2	17	12898343	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10	2549989	12898343	68296867	71	6377											
LRRC48	83450	bcgsc.ca	37	chr17	17896205	17896205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctcatgtacctggactacCggcgcattgatgaccacaca	8	14	1	2	rs4584886	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	17896205	C	T	17896205	3	4	66	1	0	0	0	0	1	0	0	0	9077	643	23	1	585	1	LRRC48	17	17896205	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	4997862	17896205	63299005	72	6378											
SLC5A10	125206	mdanderson.org	37	chr17	18918396	18918396	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatcgcagtgatgctggcGgcgctcatgtcgtcgctgac	14	11	1	3	rs2074279	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	18918396	G	C	18918396	2	2	66	1	0	0	0	0	0	0	0	1	14760	1103	39	5		5	SLC5A10	17	18918396	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1022191	18918396	62276814	73	6379											
PSMD12	5718	broad.mit.edu	37	chr17	65340732	65340732	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agattcttacatgttcaacaActctgttcttcaagtctttc	4	10	6	1	rs2230680	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	65340732	A	G	65340732	3	3	66	1	0	0	0	0	1	0	0	0	12784	43	2	2	309	2	PSMD12	17	65340732	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	46422336	65340732	15854478	74	6380											
EVPL	2125	bcgsc.ca	37	chr17	74006474	74006474	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcagttggctcctctGcgcctccagctcatgctgca	10	16	2	0	rs151046085		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	74006474	G	A	74006474	4	1	66	1	0	0	0	0	0	1	0	0	5331	1328	46	4	3293	4	EVPL	17	74006474	Nonsense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	8665742	74006474	7188736	75	6381											
P4HB	5034	hgsc.bcm.edu	37	chr17	79801890	79801891	+	Frame_Shift_Del	DEL	AC	AC	-													cgggtctggctttgcgtattAcagttcatctttcacagctt					novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		-	79801891	AC	-	79801890	7	5	66	1	0	1	0	1	0	0	0	0	11438	404	14	0	5	0	P4HB	17	79801890	Frame_Shift_Del	DEL	AC	TCGA-KO-8417-01A-11D-2310-10	5795416	79801890	1393320	76	6382	174	2									
P4HB	5034	bcgsc.ca	37	chr17	79801891	79801892	+	Frame_Shift_Del	DEL	AC	AC	-													gggtctggctttgcgtattaCagttcatctttcacagcttt					novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		-	79801892	AC	-	79801891	7	5	66	1	0	1	0	1	0	0	0	0	11438	465	17	0	6	0	P4HB	17	79801891	Frame_Shift_Del	DEL	AC	TCGA-KO-8417-01A-11D-2310-10	1	79801891	1393319	77	6383	174	2									
POTEC	388468	mdanderson.org	37	chr18	14542884	14542884	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcgtcttcataaaggagtTgtcatggtctccagaagtgc	12	8	4	1	rs2458862	bycluster;by2hit2allele	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	14542884	T	C	14542884	3	2	66	1	0	0	0	0	1	0	0	0	12342	1812	63	4	1410	4	POTEC	18	14542884	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		14542884	63534364	78	6384											
GRIN3B	116444	mdanderson.org	37	chr19	1009585	1009585	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaccacactctggccgacCggggagccaggaatgaggcg	14	15	1	1	rs10401454	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	1009585	C	G	1009585	3	3	66	1	0	0	0	0	1	0	0	0	6842	652	23	5	3150	5	GRIN3B	19	1009585	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10		1009585	58119398	79	6385											
MUC16	94025	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	chr19	8994179	8994179	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccagagtacagagggcCaacactggtgttcttgaaca	12	10	1	3	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	8994179	C	T	8994179	3	4	66	1	0	0	0	0	1	0	0	0	10051	594	21	4	2097	4	MUC16	19	8994179	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	7984594	8994179	50134804	80	6386											
NUMBL	9253	mdanderson.org	37	chr19	41173898	41173898	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgTtgctgttgctgctgctgctg	14	11	0	0	rs79747129		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	41173898	T	C	41173898	2	2	66	1	0	0	0	0	0	0	0	1	10831	1722	60	2		2	NUMBL	19	41173898	Silent	SNP	T	TCGA-KO-8417-01A-11D-2310-10	32179719	41173898	17955085	81	6387											
PSG4	5672	mdanderson.org	37	chr19	43709647	43709647	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgagcaggacccccttccaGgtgatgcgctgtgtgcaggg	16	11	0	2	rs12985206	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	43709647	G	A	43709647	2	1	66	1	0	0	0	0	0	0	0	1	12746	987	35	4		4	PSG4	19	43709647	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	2535749	43709647	15419336	82	6388											
ZNF180	7733	broad.mit.edu	37	chr19	44982053	44982053	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatacatgtttatgaaaatgGtttcttatgggtataactgg	10	3	1	1	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	44982053	G	T	44982053	3	4	66	1	0	0	0	0	1	0	0	0	17853	1252	44	5	1437	5	ZNF180	19	44982053	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1272406	44982053	14146930	83	6389											
ZNF577	84765	bcgsc.ca	37	chr19	52375849	52375849	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgatggggccacattcactTcatttgtgaggcttattctc	9	10	3	2	rs144158167		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	52375849	T	A	52375849	3	1	66	1	0	0	0	0	1	0	0	0	18114	1783	62	5	67	5	ZNF577	19	52375849	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10	7393796	52375849	6753134	84	6390											
MAVS	57506	bcgsc.ca	37	chr20	3838399	3838399	+	Missense_Mutation	SNP	T	T	A													tcattgcggcactgaggggcTgtgagctagttgatctcgcg					rs34591263	alternate_allele	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	3838399	T	A	3838399	3	1	66	1	0	0	0	0	1	0	0	0	9415	1580	55	5	241	5	MAVS	20	3838399	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		3838399	59187121	85	6391	175	2									
MAVS	57506	mdanderson.org;bcgsc.ca	37	chr20	3838400	3838400	+	Missense_Mutation	SNP	G	G	T													cattgcggcactgaggggctGtgagctagttgatctcgcgg					rs11905552	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	3838400	G	T	3838400	3	4	66	1	0	0	0	0	1	0	0	0	9415	1377	48	5	242	5	MAVS	20	3838400	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	1	3838400	59187120	86	6392	175	2									
PPDPF	79144	hgsc.bcm.edu	37	chr20	62152686	62152687	+	Frame_Shift_Ins	INS	-	-	CC													ggccatcccctccagcggctINScgctcgtggccacccacgac					novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		CC	62152687	-	CC	62152686	7	5	66	1	0	1	1	0	0	0	0	0	12386	1551	54	0	27	0	PPDPF	20	62152686	Frame_Shift_Ins	INS	-	TCGA-KO-8417-01A-11D-2310-10	58314286	62152686	872834	87	6393											
SRMS	6725	bcgsc.ca	37	chr20	62173561	62173561	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttgcgcatgagttccgtgaCgatgtacacaggctccccgc	11	14	0	2	rs310657	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	62173561	C	G	62173561	3	3	66	1	0	0	0	0	1	0	0	0	15252	536	19	5	581	5	SRMS	20	62173561	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	20875	62173561	851959	88	6394											
ERG	2078	mdanderson.org	37	chr21	39795360	39795360	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acgataactctgcgctcgttCgtggtcatgtttgggggtgg	15	8	2	0	rs200326224		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	39795360	C	T	39795360	2	4	66	1	0	0	0	0	0	0	0	1	5261	871	31	1		1	ERG	21	39795360	Silent	SNP	C	TCGA-KO-8417-01A-11D-2310-10		39795360	8334535	89	6395											
KRTAP12-2	353323	bcgsc.ca	37	chr21	46086377	46086377	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgctcagcagcaggaagAgatactgtaggagatgggtc	14	7	2	2	rs2838622	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	46086377	A	G	46086377	3	3	66	1	0	0	0	0	1	0	0	0	8580	304	11	2	17	2	KRTAP12-2	21	46086377	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	6291017	46086377	2043518	90	6396											
CDC42EP1	11135	mdanderson.org	37	chr22	37964429	37964429	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcgcctgctgcaaaccccTcagcacctgccgcaaccccc	7	22	1	0	rs62235034	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	37964429	T	C	37964429	3	2	66	1	0	0	0	0	1	0	0	0	3104	1551	54	2	784	2	CDC42EP1	22	37964429	Missense_Mutation	SNP	T	TCGA-KO-8417-01A-11D-2310-10		37964429	13340137	91	6397											
BAIAP2L2	80115	mdanderson.org	37	chr22	38483172	38483172	+	Silent	SNP	G	G	T													gggttcatgggtgtcatgggGgacatggaggtcatggaggt					novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	38483172	G	T	38483172	2	4	66	1	0	0	0	0	0	0	0	1	1307	1219	43	5		5	BAIAP2L2	22	38483172	Silent	SNP	G	TCGA-KO-8417-01A-11D-2310-10	518743	38483172	12821394	92	6398	176	3									
BAIAP2L2	80115	mdanderson.org	37	chr22	38483174	38483174	+	Missense_Mutation	SNP	A	A	T													gttcatgggtgtcatgggggAcatggaggtcatggaggtca					rs78489217	byfrequency	TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	38483174	A	T	38483174	3	4	66	1	0	0	0	0	1	0	0	0	1307	275	10	5	389	5	BAIAP2L2	22	38483174	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	2	38483174	12821392	93	6399	176	3									
BAIAP2L2	80115	mdanderson.org	37	chr22	38483180	38483180	+	Missense_Mutation	SNP	A	A	G													gggtgtcatgggggacatggAggtcatggaggtcatggggg					rs111783779		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	38483180	A	G	38483180	3	3	66	1	0	0	0	0	1	0	0	0	1307	304	11	2	395	2	BAIAP2L2	22	38483180	Missense_Mutation	SNP	A	TCGA-KO-8417-01A-11D-2310-10	6	38483180	12821386	94	6400	176	3									
PHF21B	112885	hgsc.bcm.edu	37	chr22	45283998	45283998	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgctcatcgtgggtgatctCgttctggaagagaagggagg	17	6	3	2	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	45283998	C	G	45283998	3	3	66	1	0	0	0	0	1	0	0	0	11914	893	31	5	569	5	PHF21B	22	45283998	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	6800818	45283998	6020568	95	6401											
CXorf22	170063	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	35969403	35969403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaaattaaacatgcacGtgtatacaataatagcccag	5	8	1	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		A	35969403	G	A	35969403	3	1	66	1	0	0	0	0	1	0	0	0	4133	1145	40	1	830	1	CXorf22	23	35969403	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10		35969403	119301157	96	6402											
PDZD11	51248	broad.mit.edu;mdanderson.org;bcgsc.ca	37	chrX	69506937	69506937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggctgcaactttctagtGcacagtcctctctttttggc	10	11	2	0	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	69506937	G	T	69506937	3	4	66	1	0	0	0	0	1	0	0	0	11779	1319	46	5	8	5	PDZD11	23	69506937	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	33537534	69506937	85763623	97	6403											
RPS6KA6	27330	broad.mit.edu;hgsc.bcm.edu;mdanderson.org	37	chrX	83361951	83361951	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatacatttgcacttgtgatAggagtgattttatattcttc	7	5	1	2	novel		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		G	83361951	A	G	83361951	2	3	66	1	0	0	0	0	0	0	0	1	13750	407	15	2		2	RPS6KA6	23	83361951	Silent	SNP	A	TCGA-KO-8417-01A-11D-2310-10	13855014	83361951	71908609	98	6404											
RBMX	27316	mdanderson.org	37	chrX	135956462	135956462	+	Missense_Mutation	SNP	G	G	C													ttgtctgccaacccgatcacGaccacttgagtagagatcac					rs74667874		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		C	135956462	G	C	135956462	3	2	66	1	0	0	0	0	1	0	0	0	13243	1058	37	5	219	5	RBMX	23	135956462	Missense_Mutation	SNP	G	TCGA-KO-8417-01A-11D-2310-10	52594511	135956462	19314098	99	6405	177	2									
RBMX	27316	mdanderson.org	37	chrX	135956467	135956467	+	Missense_Mutation	SNP	C	C	T													tgccaacccgatcacgaccaCttgagtagagatcacttcgg					rs75385615		TCGA-KO-8417-01A-11D-2310-10	TCGA-KO-8417-11A-01D-2311-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c7af04b-e171-47c4-8be5-5db33f20148e	32e33f58-0399-49bb-bc8c-1eeb122d4df4		T	135956467	C	T	135956467	3	4	66	1	0	0	0	0	1	0	0	0	13243	565	20	4	224	4	RBMX	23	135956467	Missense_Mutation	SNP	C	TCGA-KO-8417-01A-11D-2310-10	5	135956467	19314093	100	6406	177	2									
