
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events_Nozzle/broadinstitute.org/cancer.genome.analysis/10466/18/GDAC_Correlate_Genomic_Events_NozzleReport.R")
> result <- create.report.html("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events_Nozzle/broadinstitute.org/cancer.genome.analysis/10466/18/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iF=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/KICH-TP/11588628/analysis.results.RData", "-nV=Nozzle.R1", "-gE=CLI_CLUS")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
      "NEOPLASM.DISEASESTAGE"           "PATHOLOGY.T.STAGE" 
                           V5                            V6 
          "PATHOLOGY.N.STAGE"           "PATHOLOGY.M.STAGE" 
                           V7                            V8 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V9                           V10 
      "NUMBERPACKYEARSSMOKED"                        "RACE" 
                          V11 
                  "ETHNICITY" 
> q(save="no")
