[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTKIRP-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/11588924/KIRP-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/11548605/transformed.cor.cli.txt"

nPatients in clinical file=291, in cluster file=288, common to both=288
[1]  31 288
[1] "AMP PEAK 1(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          45                          243 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          45                          243 
[1] "AMP PEAK 2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          53                          235 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          53                          235 
[1] "AMP PEAK 3(3Q27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE 
                         100                          188 
  AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE 
                         100                          188 
[1] "AMP PEAK 4(5Q35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          37                          251 
  AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE 
                          37                          251 
[1] "AMP PEAK 5(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE 
                         177                          111 
  AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE 
                         177                          111 
[1] "AMP PEAK 6(17Q25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE 
                          201                            87 
  AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE 
                          201                            87 
[1] "AMP PEAK 7(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE 
                           31                           257 
  AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE 
                           31                           257 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            55                            233 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            55                            233 
[1] "DEL PEAK  2(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE 
                          8                         280 
  DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE 
                          8                         280 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           278 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           10                           278 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           12                           276 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           12                           276 
[1] "DEL PEAK  5(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                           25                           263 
  DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE 
                           25                           263 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           32                           256 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           32                           256 
[1] "DEL PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE 
                            13                            275 
  DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE 
                            13                            275 
[1] "DEL PEAK  8(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           11                           277 
  DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE 
                           11                           277 
[1] "DEL PEAK  9(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           26                           262 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           26                           262 
[1] "DEL PEAK 10(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            29                            259 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                            29                            259 
[1] "DEL PEAK 11(6Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE 
                           32                           256 
  DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE 
                           32                           256 
[1] "DEL PEAK 12(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           40                           248 
  DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE 
                           40                           248 
[1] "DEL PEAK 13(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE 
                            19                            269 
  DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE 
                            19                            269 
[1] "DEL PEAK 14(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            31                            257 
  DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE 
                            31                            257 
[1] "DEL PEAK 15(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE 
                            29                            259 
  DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE 
                            29                            259 
[1] "DEL PEAK 16(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            51                            237 
  DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE 
                            51                            237 
[1] "DEL PEAK 17(14Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE 
                            50                            238 
  DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE 
                            50                            238 
[1] "DEL PEAK 18(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE 
                            35                            253 
  DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE 
                            35                            253 
[1] "DEL PEAK 19(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE 
                            12                            276 
  DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE 
                            12                            276 
[1] "DEL PEAK 20(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                            23                            265 
  DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE 
                            23                            265 
[1] "DEL PEAK 21(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE 
                             19                             269 
  DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE 
                             19                             269 
[1] "DEL PEAK 22(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE 
                            63                            225 
  DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE 
                            63                            225 
[1] "DEL PEAK 23(XP11.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE 
                           34                           254 
  DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE 
                           34                           254 
[1] "DEL PEAK 24(XQ28) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE 
                         28                         260 
  DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE 
                         28                         260 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 288 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 288 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(2P23.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        2      3     14     26
  AMP PEAK 1(2P23.2) WILD-TYPE    112     73     32     26
D1V1, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          2                          112
  CLUS_2                          3                           73
  CLUS_3                         14                           32
  CLUS_4                         26                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        4     14     22
  AMP PEAK 1(2P23.2) WILD-TYPE     59     44     81
D1V2, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          4                           59
  CLUS_2                         14                           44
  CLUS_3                         22                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       10     14      8
  AMP PEAK 1(2P23.2) WILD-TYPE     65     70     39
D1V3, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         10                           65
  CLUS_2                         14                           70
  CLUS_3                          8                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(2P23.2) MUTATED        5      2      4      4      9      2      4
  AMP PEAK 1(2P23.2) WILD-TYPE     12     20     25     18     18     37     21
                              vv
clus                           CLUS_8
  AMP PEAK 1(2P23.2) MUTATED        2
  AMP PEAK 1(2P23.2) WILD-TYPE     23
D1V4, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          5                           12
  CLUS_2                          2                           20
  CLUS_3                          4                           25
  CLUS_4                          4                           18
  CLUS_5                          9                           18
  CLUS_6                          2                           37
  CLUS_7                          4                           21
  CLUS_8                          2                           23
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       13     15     17
  AMP PEAK 1(2P23.2) WILD-TYPE     65     99     78
D1V5, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         13                           65
  CLUS_2                         15                           99
  CLUS_3                         17                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED       19     16      2      8
  AMP PEAK 1(2P23.2) WILD-TYPE    106     56     42     38
D1V6, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         19                          106
  CLUS_2                         16                           56
  CLUS_3                          2                           42
  CLUS_4                          8                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       11     22     12
  AMP PEAK 1(2P23.2) WILD-TYPE     78     81     84
D1V7, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         11                           78
  CLUS_2                         22                           81
  CLUS_3                         12                           84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED        7      5     19     14
  AMP PEAK 1(2P23.2) WILD-TYPE     48     61     62     72
D1V8, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          7                           48
  CLUS_2                          5                           61
  CLUS_3                         19                           62
  CLUS_4                         14                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        8     12     14
  AMP PEAK 1(2P23.2) WILD-TYPE     61     69     57
D1V9, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          8                           61
  CLUS_2                         12                           69
  CLUS_3                         14                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED       16      9      6      3
  AMP PEAK 1(2P23.2) WILD-TYPE     82     68     10     27
D1V10, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         16                           82
  CLUS_2                          9                           68
  CLUS_3                          6                           10
  CLUS_4                          3                           27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(2Q32.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED        4      4     15     30
  AMP PEAK 2(2Q32.1) WILD-TYPE    110     72     31     22
D2V1, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          4                          110
  CLUS_2                          4                           72
  CLUS_3                         15                           31
  CLUS_4                         30                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED        7     15     25
  AMP PEAK 2(2Q32.1) WILD-TYPE     56     43     78
D2V2, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          7                           56
  CLUS_2                         15                           43
  CLUS_3                         25                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       13     17     10
  AMP PEAK 2(2Q32.1) WILD-TYPE     62     67     37
D2V3, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         13                           62
  CLUS_2                         17                           67
  CLUS_3                         10                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 2(2Q32.1) MUTATED        6      3      4      6     10      4      4
  AMP PEAK 2(2Q32.1) WILD-TYPE     11     19     25     16     17     35     21
                              vv
clus                           CLUS_8
  AMP PEAK 2(2Q32.1) MUTATED        3
  AMP PEAK 2(2Q32.1) WILD-TYPE     22
D2V4, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          6                           11
  CLUS_2                          3                           19
  CLUS_3                          4                           25
  CLUS_4                          6                           16
  CLUS_5                         10                           17
  CLUS_6                          4                           35
  CLUS_7                          4                           21
  CLUS_8                          3                           22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       16     17     20
  AMP PEAK 2(2Q32.1) WILD-TYPE     62     97     75
D2V5, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         16                           62
  CLUS_2                         17                           97
  CLUS_3                         20                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       25     18      2      8
  AMP PEAK 2(2Q32.1) WILD-TYPE    100     54     42     38
D2V6, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         25                          100
  CLUS_2                         18                           54
  CLUS_3                          2                           42
  CLUS_4                          8                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       14     24     15
  AMP PEAK 2(2Q32.1) WILD-TYPE     75     79     81
D2V7, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         14                           75
  CLUS_2                         24                           79
  CLUS_3                         15                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       10      7     21     15
  AMP PEAK 2(2Q32.1) WILD-TYPE     45     59     60     71
D2V8, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         10                           45
  CLUS_2                          7                           59
  CLUS_3                         21                           60
  CLUS_4                         15                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       12     15     14
  AMP PEAK 2(2Q32.1) WILD-TYPE     57     66     57
D2V9, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         12                           57
  CLUS_2                         15                           66
  CLUS_3                         14                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       18     14      5      4
  AMP PEAK 2(2Q32.1) WILD-TYPE     80     63     11     26
D2V10, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         18                           80
  CLUS_2                         14                           63
  CLUS_3                          5                           11
  CLUS_4                          4                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(3Q27.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       20     17     45     18
  AMP PEAK 3(3Q27.1) WILD-TYPE     94     59      1     34
D3V1, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         20                           94
  CLUS_2                         17                           59
  CLUS_3                         45                            1
  CLUS_4                         18                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       22     14     44
  AMP PEAK 3(3Q27.1) WILD-TYPE     41     44     59
D3V2, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         22                           41
  CLUS_2                         14                           44
  CLUS_3                         44                           59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       28     29     11
  AMP PEAK 3(3Q27.1) WILD-TYPE     47     55     36
D3V3, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         28                           47
  CLUS_2                         29                           55
  CLUS_3                         11                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 3(3Q27.1) MUTATED       12     11      8      6      6      9     10
  AMP PEAK 3(3Q27.1) WILD-TYPE      5     11     21     16     21     30     15
                              vv
clus                           CLUS_8
  AMP PEAK 3(3Q27.1) MUTATED        6
  AMP PEAK 3(3Q27.1) WILD-TYPE     19
D3V4, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         12                            5
  CLUS_2                         11                           11
  CLUS_3                          8                           21
  CLUS_4                          6                           16
  CLUS_5                          6                           21
  CLUS_6                          9                           30
  CLUS_7                         10                           15
  CLUS_8                          6                           19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       39     48     13
  AMP PEAK 3(3Q27.1) WILD-TYPE     39     66     82
D3V5, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         39                           39
  CLUS_2                         48                           66
  CLUS_3                         13                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       39     39     12     10
  AMP PEAK 3(3Q27.1) WILD-TYPE     86     33     32     36
D3V6, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         39                           86
  CLUS_2                         39                           33
  CLUS_3                         12                           32
  CLUS_4                         10                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       38     38     24
  AMP PEAK 3(3Q27.1) WILD-TYPE     51     65     72
D3V7, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         38                           51
  CLUS_2                         38                           65
  CLUS_3                         24                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       20     18     43     19
  AMP PEAK 3(3Q27.1) WILD-TYPE     35     48     38     67
D3V8, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         20                           35
  CLUS_2                         18                           48
  CLUS_3                         43                           38
  CLUS_4                         19                           67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.1) MUTATED       23     27     20
  AMP PEAK 3(3Q27.1) WILD-TYPE     46     54     51
D3V9, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         23                           46
  CLUS_2                         27                           54
  CLUS_3                         20                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3Q27.1) MUTATED       42     19      3      6
  AMP PEAK 3(3Q27.1) WILD-TYPE     56     58     13     24
D3V10, multiclass
        clus
vv       AMP PEAK 3(3Q27.1) MUTATED AMP PEAK 3(3Q27.1) WILD-TYPE
  CLUS_1                         42                           56
  CLUS_2                         19                           58
  CLUS_3                          3                           13
  CLUS_4                          6                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(5Q35.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED       19      2      0     16
  AMP PEAK 4(5Q35.2) WILD-TYPE     95     74     46     36
D4V1, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         19                           95
  CLUS_2                          2                           74
  CLUS_3                          0                           46
  CLUS_4                         16                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       11     15      4
  AMP PEAK 4(5Q35.2) WILD-TYPE     52     43     99
D4V2, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         11                           52
  CLUS_2                         15                           43
  CLUS_3                          4                           99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       10      9     10
  AMP PEAK 4(5Q35.2) WILD-TYPE     65     75     37
D4V3, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         10                           65
  CLUS_2                          9                           75
  CLUS_3                         10                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 4(5Q35.2) MUTATED        4      1      2      6      3      5      3
  AMP PEAK 4(5Q35.2) WILD-TYPE     13     21     27     16     24     34     22
                              vv
clus                           CLUS_8
  AMP PEAK 4(5Q35.2) MUTATED        5
  AMP PEAK 4(5Q35.2) WILD-TYPE     20
D4V4, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                          4                           13
  CLUS_2                          1                           21
  CLUS_3                          2                           27
  CLUS_4                          6                           16
  CLUS_5                          3                           24
  CLUS_6                          5                           34
  CLUS_7                          3                           22
  CLUS_8                          5                           20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       12      5     20
  AMP PEAK 4(5Q35.2) WILD-TYPE     66    109     75
D4V5, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         12                           66
  CLUS_2                          5                          109
  CLUS_3                         20                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED       29      3      1      4
  AMP PEAK 4(5Q35.2) WILD-TYPE     96     69     43     42
D4V6, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         29                           96
  CLUS_2                          3                           69
  CLUS_3                          1                           43
  CLUS_4                          4                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       18      9     10
  AMP PEAK 4(5Q35.2) WILD-TYPE     71     94     86
D4V7, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         18                           71
  CLUS_2                          9                           94
  CLUS_3                         10                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED       14     10      4      9
  AMP PEAK 4(5Q35.2) WILD-TYPE     41     56     77     77
D4V8, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         14                           41
  CLUS_2                         10                           56
  CLUS_3                          4                           77
  CLUS_4                          9                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(5Q35.2) MUTATED       13      9     10
  AMP PEAK 4(5Q35.2) WILD-TYPE     56     72     61
D4V9, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         13                           56
  CLUS_2                          9                           72
  CLUS_3                         10                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(5Q35.2) MUTATED       18     13      0      1
  AMP PEAK 4(5Q35.2) WILD-TYPE     80     64     16     29
D4V10, multiclass
        clus
vv       AMP PEAK 4(5Q35.2) MUTATED AMP PEAK 4(5Q35.2) WILD-TYPE
  CLUS_1                         18                           80
  CLUS_2                         13                           64
  CLUS_3                          0                           16
  CLUS_4                          1                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(7Q31.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       32     75     43     27
  AMP PEAK 5(7Q31.2) WILD-TYPE     82      1      3     25
D5V1, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         32                           82
  CLUS_2                         75                            1
  CLUS_3                         43                            3
  CLUS_4                         27                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       34     19     85
  AMP PEAK 5(7Q31.2) WILD-TYPE     29     39     18
D5V2, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         34                           29
  CLUS_2                         19                           39
  CLUS_3                         85                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       46     61     22
  AMP PEAK 5(7Q31.2) WILD-TYPE     29     23     25
D5V3, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         46                           29
  CLUS_2                         61                           23
  CLUS_3                         22                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 5(7Q31.2) MUTATED       14     17     27      9     12     18     18
  AMP PEAK 5(7Q31.2) WILD-TYPE      3      5      2     13     15     21      7
                              vv
clus                           CLUS_8
  AMP PEAK 5(7Q31.2) MUTATED       14
  AMP PEAK 5(7Q31.2) WILD-TYPE     11
D5V4, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         14                            3
  CLUS_2                         17                            5
  CLUS_3                         27                            2
  CLUS_4                          9                           13
  CLUS_5                         12                           15
  CLUS_6                         18                           21
  CLUS_7                         18                            7
  CLUS_8                         14                           11
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       50     97     29
  AMP PEAK 5(7Q31.2) WILD-TYPE     28     17     66
D5V5, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         50                           28
  CLUS_2                         97                           17
  CLUS_3                         29                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       59     68     32     17
  AMP PEAK 5(7Q31.2) WILD-TYPE     66      4     12     29
D5V6, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         59                           66
  CLUS_2                         68                            4
  CLUS_3                         32                           12
  CLUS_4                         17                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       47     72     58
  AMP PEAK 5(7Q31.2) WILD-TYPE     42     31     38
D5V7, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         47                           42
  CLUS_2                         72                           31
  CLUS_3                         58                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       23     41     67     46
  AMP PEAK 5(7Q31.2) WILD-TYPE     32     25     14     40
D5V8, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         23                           32
  CLUS_2                         41                           25
  CLUS_3                         67                           14
  CLUS_4                         46                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q31.2) MUTATED       33     64     35
  AMP PEAK 5(7Q31.2) WILD-TYPE     36     17     36
D5V9, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         33                           36
  CLUS_2                         64                           17
  CLUS_3                         35                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q31.2) MUTATED       67     35      4     26
  AMP PEAK 5(7Q31.2) WILD-TYPE     31     42     12      4
D5V10, multiclass
        clus
vv       AMP PEAK 5(7Q31.2) MUTATED AMP PEAK 5(7Q31.2) WILD-TYPE
  CLUS_1                         67                           31
  CLUS_2                         35                           42
  CLUS_3                          4                           12
  CLUS_4                         26                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(17Q25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       43     76     45     37
  AMP PEAK 6(17Q25.2) WILD-TYPE     71      0      1     15
D6V1, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          43                            71
  CLUS_2                          76                             0
  CLUS_3                          45                             1
  CLUS_4                          37                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       38     34     89
  AMP PEAK 6(17Q25.2) WILD-TYPE     25     24     14
D6V2, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          38                            25
  CLUS_2                          34                            24
  CLUS_3                          89                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       56     63     27
  AMP PEAK 6(17Q25.2) WILD-TYPE     19     21     20
D6V3, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          56                            19
  CLUS_2                          63                            21
  CLUS_3                          27                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(17Q25.2) MUTATED       15     20     26     11     13     23
  AMP PEAK 6(17Q25.2) WILD-TYPE      2      2      3     11     14     16
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 6(17Q25.2) MUTATED       21     17
  AMP PEAK 6(17Q25.2) WILD-TYPE      4      8
D6V4, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          15                             2
  CLUS_2                          20                             2
  CLUS_3                          26                             3
  CLUS_4                          11                            11
  CLUS_5                          13                            14
  CLUS_6                          23                            16
  CLUS_7                          21                             4
  CLUS_8                          17                             8
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       54    101     45
  AMP PEAK 6(17Q25.2) WILD-TYPE     24     13     50
D6V5, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          54                            24
  CLUS_2                         101                            13
  CLUS_3                          45                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       79     68     35     18
  AMP PEAK 6(17Q25.2) WILD-TYPE     46      4      9     28
D6V6, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          79                            46
  CLUS_2                          68                             4
  CLUS_3                          35                             9
  CLUS_4                          18                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       56     80     65
  AMP PEAK 6(17Q25.2) WILD-TYPE     33     23     31
D6V7, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          56                            33
  CLUS_2                          80                            23
  CLUS_3                          65                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       30     46     69     56
  AMP PEAK 6(17Q25.2) WILD-TYPE     25     20     12     30
D6V8, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          30                            25
  CLUS_2                          46                            20
  CLUS_3                          69                            12
  CLUS_4                          56                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       42     67     42
  AMP PEAK 6(17Q25.2) WILD-TYPE     27     14     29
D6V9, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          42                            27
  CLUS_2                          67                            14
  CLUS_3                          42                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       72     45      7     27
  AMP PEAK 6(17Q25.2) WILD-TYPE     26     32      9      3
D6V10, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          72                            26
  CLUS_2                          45                            32
  CLUS_3                           7                             9
  CLUS_4                          27                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(19P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        1     22      0      8
  AMP PEAK 7(19P13.2) WILD-TYPE    113     54     46     44
D7V1, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           1                           113
  CLUS_2                          22                            54
  CLUS_3                           0                            46
  CLUS_4                           8                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        2      3     17
  AMP PEAK 7(19P13.2) WILD-TYPE     61     55     86
D7V2, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           2                            61
  CLUS_2                           3                            55
  CLUS_3                          17                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        4     15      1
  AMP PEAK 7(19P13.2) WILD-TYPE     71     69     46
D7V3, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                            71
  CLUS_2                          15                            69
  CLUS_3                           1                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 7(19P13.2) MUTATED        1      0      8      2      2      0
  AMP PEAK 7(19P13.2) WILD-TYPE     16     22     21     20     25     39
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 7(19P13.2) MUTATED        3      4
  AMP PEAK 7(19P13.2) WILD-TYPE     22     21
D7V4, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           1                            16
  CLUS_2                           0                            22
  CLUS_3                           8                            21
  CLUS_4                           2                            20
  CLUS_5                           2                            25
  CLUS_6                           0                            39
  CLUS_7                           3                            22
  CLUS_8                           4                            21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        3     22      6
  AMP PEAK 7(19P13.2) WILD-TYPE     75     92     89
D7V5, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           3                            75
  CLUS_2                          22                            92
  CLUS_3                           6                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        4     11      9      7
  AMP PEAK 7(19P13.2) WILD-TYPE    121     61     35     39
D7V6, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                           121
  CLUS_2                          11                            61
  CLUS_3                           9                            35
  CLUS_4                           7                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        5     15     11
  AMP PEAK 7(19P13.2) WILD-TYPE     84     88     85
D7V7, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          15                            88
  CLUS_3                          11                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        4      7     12      8
  AMP PEAK 7(19P13.2) WILD-TYPE     51     59     69     78
D7V8, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                            51
  CLUS_2                           7                            59
  CLUS_3                          12                            69
  CLUS_4                           8                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        4     13      4
  AMP PEAK 7(19P13.2) WILD-TYPE     65     68     67
D7V9, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                          13                            68
  CLUS_3                           4                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        9      3      1      8
  AMP PEAK 7(19P13.2) WILD-TYPE     89     74     15     22
D7V10, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           9                            89
  CLUS_2                           3                            74
  CLUS_3                           1                            15
  CLUS_4                           8                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       21      0      2     32
  DEL PEAK  1(1P36.31) WILD-TYPE     93     76     44     20
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           21                             93
  CLUS_2                            0                             76
  CLUS_3                            2                             44
  CLUS_4                           32                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       11     22      9
  DEL PEAK  1(1P36.31) WILD-TYPE     52     36     94
D8V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             52
  CLUS_2                           22                             36
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       18     15      9
  DEL PEAK  1(1P36.31) WILD-TYPE     57     69     38
D8V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           18                             57
  CLUS_2                           15                             69
  CLUS_3                            9                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        2      4      2      4     12      7
  DEL PEAK  1(1P36.31) WILD-TYPE     15     18     27     18     15     32
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.31) MUTATED        4      7
  DEL PEAK  1(1P36.31) WILD-TYPE     21     18
D8V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                            4                             18
  CLUS_3                            2                             27
  CLUS_4                            4                             18
  CLUS_5                           12                             15
  CLUS_6                            7                             32
  CLUS_7                            4                             21
  CLUS_8                            7                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       11      6     38
  DEL PEAK  1(1P36.31) WILD-TYPE     67    108     57
D8V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             67
  CLUS_2                            6                            108
  CLUS_3                           38                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       29      6      1     19
  DEL PEAK  1(1P36.31) WILD-TYPE     96     66     43     27
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           29                             96
  CLUS_2                            6                             66
  CLUS_3                            1                             43
  CLUS_4                           19                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       16     22     17
  DEL PEAK  1(1P36.31) WILD-TYPE     73     81     79
D8V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           16                             73
  CLUS_2                           22                             81
  CLUS_3                           17                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       12     14     14     15
  DEL PEAK  1(1P36.31) WILD-TYPE     43     52     67     71
D8V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             43
  CLUS_2                           14                             52
  CLUS_3                           14                             67
  CLUS_4                           15                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       13      8     19
  DEL PEAK  1(1P36.31) WILD-TYPE     56     73     52
D8V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           13                             56
  CLUS_2                            8                             73
  CLUS_3                           19                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       17     18      5      0
  DEL PEAK  1(1P36.31) WILD-TYPE     81     59     11     30
D8V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           17                             81
  CLUS_2                           18                             59
  CLUS_3                            5                             11
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  2(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        5      0      0      3
  DEL PEAK  2(2P12) WILD-TYPE    109     76     46     49
D9V1, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         5                         109
  CLUS_2                         0                          76
  CLUS_3                         0                          46
  CLUS_4                         3                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        0      3      2
  DEL PEAK  2(2P12) WILD-TYPE     63     55    101
D9V2, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          63
  CLUS_2                         3                          55
  CLUS_3                         2                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        0      4      2
  DEL PEAK  2(2P12) WILD-TYPE     75     80     45
D9V3, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          75
  CLUS_2                         4                          80
  CLUS_3                         2                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(2P12) MUTATED        0      0      0      3      1      2      0
  DEL PEAK  2(2P12) WILD-TYPE     17     22     29     19     26     37     25
                             vv
clus                          CLUS_8
  DEL PEAK  2(2P12) MUTATED        0
  DEL PEAK  2(2P12) WILD-TYPE     25
D9V4, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         0                          17
  CLUS_2                         0                          22
  CLUS_3                         0                          29
  CLUS_4                         3                          19
  CLUS_5                         1                          26
  CLUS_6                         2                          37
  CLUS_7                         0                          25
  CLUS_8                         0                          25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        3      1      4
  DEL PEAK  2(2P12) WILD-TYPE     75    113     91
D9V5, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         3                          75
  CLUS_2                         1                         113
  CLUS_3                         4                          91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        6      0      1      1
  DEL PEAK  2(2P12) WILD-TYPE    119     72     43     45
D9V6, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         6                         119
  CLUS_2                         0                          72
  CLUS_3                         1                          43
  CLUS_4                         1                          45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        5      2      1
  DEL PEAK  2(2P12) WILD-TYPE     84    101     95
D9V7, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         5                          84
  CLUS_2                         2                         101
  CLUS_3                         1                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        3      3      1      1
  DEL PEAK  2(2P12) WILD-TYPE     52     63     80     85
D9V8, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         3                          52
  CLUS_2                         3                          63
  CLUS_3                         1                          80
  CLUS_4                         1                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2P12) MUTATED        2      1      1
  DEL PEAK  2(2P12) WILD-TYPE     67     80     70
D9V9, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         2                          67
  CLUS_2                         1                          80
  CLUS_3                         1                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2P12) MUTATED        2      2      0      0
  DEL PEAK  2(2P12) WILD-TYPE     96     75     16     30
D9V10, multiclass
        clus
vv       DEL PEAK  2(2P12) MUTATED DEL PEAK  2(2P12) WILD-TYPE
  CLUS_1                         2                          96
  CLUS_2                         2                          75
  CLUS_3                         0                          16
  CLUS_4                         0                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        4      0      0      6
  DEL PEAK  3(2Q22.1) WILD-TYPE    110     76     46     46
D10V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                           110
  CLUS_2                           0                            76
  CLUS_3                           0                            46
  CLUS_4                           6                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      5      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     61     53    103
D10V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            61
  CLUS_2                           5                            53
  CLUS_3                           0                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      2      3
  DEL PEAK  3(2Q22.1) WILD-TYPE     73     82     44
D10V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                           2                            82
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        0      2      0      2      1      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     17     20     29     20     26     37
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2Q22.1) MUTATED        0      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     25     25
D10V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           2                            20
  CLUS_3                           0                            29
  CLUS_4                           2                            20
  CLUS_5                           1                            26
  CLUS_6                           2                            37
  CLUS_7                           0                            25
  CLUS_8                           0                            25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        1      0      9
  DEL PEAK  3(2Q22.1) WILD-TYPE     77    114     86
D10V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                            77
  CLUS_2                           0                           114
  CLUS_3                           9                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        7      0      0      3
  DEL PEAK  3(2Q22.1) WILD-TYPE    118     72     44     43
D10V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           7                           118
  CLUS_2                           0                            72
  CLUS_3                           0                            44
  CLUS_4                           3                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      5      3
  DEL PEAK  3(2Q22.1) WILD-TYPE     87     98     93
D10V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            87
  CLUS_2                           5                            98
  CLUS_3                           3                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        3      2      2      3
  DEL PEAK  3(2Q22.1) WILD-TYPE     52     64     79     83
D10V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            52
  CLUS_2                           2                            64
  CLUS_3                           2                            79
  CLUS_4                           3                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3      1      5
  DEL PEAK  3(2Q22.1) WILD-TYPE     66     80     66
D10V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            66
  CLUS_2                           1                            80
  CLUS_3                           5                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        3      5      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     95     72     15     30
D10V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            95
  CLUS_2                           5                            72
  CLUS_3                           1                            15
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        7      1      0      4
  DEL PEAK  4(2Q37.3) WILD-TYPE    107     75     46     48
D11V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                           107
  CLUS_2                           1                            75
  CLUS_3                           0                            46
  CLUS_4                           4                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        3      6      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     60     52    103
D11V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           3                            60
  CLUS_2                           6                            52
  CLUS_3                           0                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        0      3      5
  DEL PEAK  4(2Q37.3) WILD-TYPE     75     81     42
D11V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            75
  CLUS_2                           3                            81
  CLUS_3                           5                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        0      0      0      3      1      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     17     22     29     19     26     35
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  4(2Q37.3) MUTATED        0      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     25     25
D11V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           0                            22
  CLUS_3                           0                            29
  CLUS_4                           3                            19
  CLUS_5                           1                            26
  CLUS_6                           4                            35
  CLUS_7                           0                            25
  CLUS_8                           0                            25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      1      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     76    113     86
D11V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                            76
  CLUS_2                           1                           113
  CLUS_3                           9                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        9      0      0      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    116     72     44     43
D11V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                           116
  CLUS_2                           0                            72
  CLUS_3                           0                            44
  CLUS_4                           3                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      3      2
  DEL PEAK  4(2Q37.3) WILD-TYPE     82    100     94
D11V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                           3                           100
  CLUS_3                           2                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        5      2      1      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     50     64     80     82
D11V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            50
  CLUS_2                           2                            64
  CLUS_3                           1                            80
  CLUS_4                           4                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        7      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     62     80     68
D11V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                            62
  CLUS_2                           1                            80
  CLUS_3                           3                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        6      3      2      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     92     74     14     30
D11V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            92
  CLUS_2                           3                            74
  CLUS_3                           2                            14
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  5(3P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        6      0      0     19
  DEL PEAK  5(3P22.1) WILD-TYPE    108     76     46     33
D12V1, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           6                           108
  CLUS_2                           0                            76
  CLUS_3                           0                            46
  CLUS_4                          19                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED        3     14      1
  DEL PEAK  5(3P22.1) WILD-TYPE     60     44    102
D12V2, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           3                            60
  CLUS_2                          14                            44
  CLUS_3                           1                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      7      3
  DEL PEAK  5(3P22.1) WILD-TYPE     65     77     44
D12V3, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                           7                            77
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P22.1) MUTATED        0      3      0      3      8      1
  DEL PEAK  5(3P22.1) WILD-TYPE     17     19     29     19     19     38
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(3P22.1) MUTATED        1      4
  DEL PEAK  5(3P22.1) WILD-TYPE     24     21
D12V4, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           3                            19
  CLUS_3                           0                            29
  CLUS_4                           3                            19
  CLUS_5                           8                            19
  CLUS_6                           1                            38
  CLUS_7                           1                            24
  CLUS_8                           4                            21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED        5      0     20
  DEL PEAK  5(3P22.1) WILD-TYPE     73    114     75
D12V5, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           5                            73
  CLUS_2                           0                           114
  CLUS_3                          20                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED       21      0      0      4
  DEL PEAK  5(3P22.1) WILD-TYPE    104     72     44     42
D12V6, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          21                           104
  CLUS_2                           0                            72
  CLUS_3                           0                            44
  CLUS_4                           4                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      5     10
  DEL PEAK  5(3P22.1) WILD-TYPE     79     98     86
D12V7, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            79
  CLUS_2                           5                            98
  CLUS_3                          10                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        9      5      1     10
  DEL PEAK  5(3P22.1) WILD-TYPE     46     61     80     76
D12V8, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           9                            46
  CLUS_2                           5                            61
  CLUS_3                           1                            80
  CLUS_4                          10                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P22.1) MUTATED       10      3     11
  DEL PEAK  5(3P22.1) WILD-TYPE     59     78     60
D12V9, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                          10                            59
  CLUS_2                           3                            78
  CLUS_3                          11                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P22.1) MUTATED        7     16      1      0
  DEL PEAK  5(3P22.1) WILD-TYPE     91     61     15     30
D12V10, multiclass
        clus
vv       DEL PEAK  5(3P22.1) MUTATED DEL PEAK  5(3P22.1) WILD-TYPE
  CLUS_1                           7                            91
  CLUS_2                          16                            61
  CLUS_3                           1                            15
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        8      1      1     22
  DEL PEAK  6(4Q34.3) WILD-TYPE    106     75     45     30
D13V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           8                           106
  CLUS_2                           1                            75
  CLUS_3                           1                            45
  CLUS_4                          22                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        4     20      2
  DEL PEAK  6(4Q34.3) WILD-TYPE     59     38    101
D13V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            59
  CLUS_2                          20                            38
  CLUS_3                           2                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       11      8      5
  DEL PEAK  6(4Q34.3) WILD-TYPE     64     76     42
D13V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          11                            64
  CLUS_2                           8                            76
  CLUS_3                           5                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        0      2      0      3      7      3
  DEL PEAK  6(4Q34.3) WILD-TYPE     17     20     29     19     20     36
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  6(4Q34.3) MUTATED        2      7
  DEL PEAK  6(4Q34.3) WILD-TYPE     23     18
D13V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           2                            20
  CLUS_3                           0                            29
  CLUS_4                           3                            19
  CLUS_5                           7                            20
  CLUS_6                           3                            36
  CLUS_7                           2                            23
  CLUS_8                           7                            18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        4      2     26
  DEL PEAK  6(4Q34.3) WILD-TYPE     74    112     69
D13V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            74
  CLUS_2                           2                           112
  CLUS_3                          26                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       18      1      1     12
  DEL PEAK  6(4Q34.3) WILD-TYPE    107     71     43     34
D13V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          18                           107
  CLUS_2                           1                            71
  CLUS_3                           1                            43
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED        9      9     14
  DEL PEAK  6(4Q34.3) WILD-TYPE     80     94     82
D13V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           9                            80
  CLUS_2                           9                            94
  CLUS_3                          14                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        7      8      5     12
  DEL PEAK  6(4Q34.3) WILD-TYPE     48     58     76     74
D13V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            48
  CLUS_2                           8                            58
  CLUS_3                           5                            76
  CLUS_4                          12                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       10      3     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     59     78     58
D13V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          10                            59
  CLUS_2                           3                            78
  CLUS_3                          13                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        7     11      8      0
  DEL PEAK  6(4Q34.3) WILD-TYPE     91     66      8     30
D13V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            91
  CLUS_2                          11                            66
  CLUS_3                           8                             8
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        8      1      1      3
  DEL PEAK  7(5P15.33) WILD-TYPE    106     75     45     49
D14V1, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            8                            106
  CLUS_2                            1                             75
  CLUS_3                            1                             45
  CLUS_4                            3                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        1      8      2
  DEL PEAK  7(5P15.33) WILD-TYPE     62     50    101
D14V2, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                            8                             50
  CLUS_3                            2                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        5      4      2
  DEL PEAK  7(5P15.33) WILD-TYPE     70     80     45
D14V3, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            5                             70
  CLUS_2                            4                             80
  CLUS_3                            2                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5P15.33) MUTATED        0      1      1      3      5      0
  DEL PEAK  7(5P15.33) WILD-TYPE     17     21     28     19     22     39
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  7(5P15.33) MUTATED        0      1
  DEL PEAK  7(5P15.33) WILD-TYPE     25     24
D14V4, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            0                             17
  CLUS_2                            1                             21
  CLUS_3                            1                             28
  CLUS_4                            3                             19
  CLUS_5                            5                             22
  CLUS_6                            0                             39
  CLUS_7                            0                             25
  CLUS_8                            1                             24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        4      1      8
  DEL PEAK  7(5P15.33) WILD-TYPE     74    113     87
D14V5, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            4                             74
  CLUS_2                            1                            113
  CLUS_3                            8                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        5      1      0      7
  DEL PEAK  7(5P15.33) WILD-TYPE    120     71     44     39
D14V6, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            5                            120
  CLUS_2                            1                             71
  CLUS_3                            0                             44
  CLUS_4                            7                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        4      3      6
  DEL PEAK  7(5P15.33) WILD-TYPE     85    100     90
D14V7, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            4                             85
  CLUS_2                            3                            100
  CLUS_3                            6                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        3      1      2      7
  DEL PEAK  7(5P15.33) WILD-TYPE     52     65     79     79
D14V8, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            3                             52
  CLUS_2                            1                             65
  CLUS_3                            2                             79
  CLUS_4                            7                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.33) MUTATED        2      3      6
  DEL PEAK  7(5P15.33) WILD-TYPE     67     78     65
D14V9, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            2                             67
  CLUS_2                            3                             78
  CLUS_3                            6                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.33) MUTATED        3      2      5      1
  DEL PEAK  7(5P15.33) WILD-TYPE     95     75     11     29
D14V10, multiclass
        clus
vv       DEL PEAK  7(5P15.33) MUTATED DEL PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            3                             95
  CLUS_2                            2                             75
  CLUS_3                            5                             11
  CLUS_4                            1                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  8(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        3      1      1      6
  DEL PEAK  8(5Q35.2) WILD-TYPE    111     75     45     46
D15V1, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           3                           111
  CLUS_2                           1                            75
  CLUS_3                           1                            45
  CLUS_4                           6                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        1      9      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     62     49    103
D15V2, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           1                            62
  CLUS_2                           9                            49
  CLUS_3                           0                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        5      2      1
  DEL PEAK  8(5Q35.2) WILD-TYPE     70     82     46
D15V3, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           5                            70
  CLUS_2                           2                            82
  CLUS_3                           1                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q35.2) MUTATED        0      0      0      1      4      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     17     22     29     21     23     39
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(5Q35.2) MUTATED        0      3
  DEL PEAK  8(5Q35.2) WILD-TYPE     25     22
D15V4, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           0                            22
  CLUS_3                           0                            29
  CLUS_4                           1                            21
  CLUS_5                           4                            23
  CLUS_6                           0                            39
  CLUS_7                           0                            25
  CLUS_8                           3                            22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        1      0     10
  DEL PEAK  8(5Q35.2) WILD-TYPE     77    114     85
D15V5, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           1                            77
  CLUS_2                           0                           114
  CLUS_3                          10                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        3      0      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE    122     72     44     38
D15V6, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           3                           122
  CLUS_2                           0                            72
  CLUS_3                           0                            44
  CLUS_4                           8                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        0      3      8
  DEL PEAK  8(5Q35.2) WILD-TYPE     89    100     88
D15V7, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            89
  CLUS_2                           3                           100
  CLUS_3                           8                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        0      1      1      9
  DEL PEAK  8(5Q35.2) WILD-TYPE     55     65     80     77
D15V8, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                           1                            65
  CLUS_3                           1                            80
  CLUS_4                           9                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q35.2) MUTATED        2      0      8
  DEL PEAK  8(5Q35.2) WILD-TYPE     67     81     63
D15V9, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           2                            67
  CLUS_2                           0                            81
  CLUS_3                           8                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q35.2) MUTATED        1      1      8      0
  DEL PEAK  8(5Q35.2) WILD-TYPE     97     76      8     30
D15V10, multiclass
        clus
vv       DEL PEAK  8(5Q35.2) MUTATED DEL PEAK  8(5Q35.2) WILD-TYPE
  CLUS_1                           1                            97
  CLUS_2                           1                            76
  CLUS_3                           8                             8
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  9(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        8      0      1     17
  DEL PEAK  9(6P12.3) WILD-TYPE    106     76     45     35
D16V1, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           8                           106
  CLUS_2                           0                            76
  CLUS_3                           1                            45
  CLUS_4                          17                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        3     11      5
  DEL PEAK  9(6P12.3) WILD-TYPE     60     47     98
D16V2, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            60
  CLUS_2                          11                            47
  CLUS_3                           5                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        7      8      4
  DEL PEAK  9(6P12.3) WILD-TYPE     68     76     43
D16V3, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           7                            68
  CLUS_2                           8                            76
  CLUS_3                           4                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6P12.3) MUTATED        1      1      2      3      3      2
  DEL PEAK  9(6P12.3) WILD-TYPE     16     21     27     19     24     37
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(6P12.3) MUTATED        2      5
  DEL PEAK  9(6P12.3) WILD-TYPE     23     20
D16V4, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           1                            16
  CLUS_2                           1                            21
  CLUS_3                           2                            27
  CLUS_4                           3                            19
  CLUS_5                           3                            24
  CLUS_6                           2                            37
  CLUS_7                           2                            23
  CLUS_8                           5                            20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        5      4     17
  DEL PEAK  9(6P12.3) WILD-TYPE     73    110     78
D16V5, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           5                            73
  CLUS_2                           4                           110
  CLUS_3                          17                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED       13      3      0     10
  DEL PEAK  9(6P12.3) WILD-TYPE    112     69     44     36
D16V6, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                          13                           112
  CLUS_2                           3                            69
  CLUS_3                           0                            44
  CLUS_4                          10                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        5     14      7
  DEL PEAK  9(6P12.3) WILD-TYPE     84     89     89
D16V7, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           5                            84
  CLUS_2                          14                            89
  CLUS_3                           7                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        3      8      9      6
  DEL PEAK  9(6P12.3) WILD-TYPE     52     58     72     80
D16V8, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            52
  CLUS_2                           8                            58
  CLUS_3                           9                            72
  CLUS_4                           6                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        4      5      9
  DEL PEAK  9(6P12.3) WILD-TYPE     65     76     62
D16V9, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                           5                            76
  CLUS_3                           9                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        8      8      2      0
  DEL PEAK  9(6P12.3) WILD-TYPE     90     69     14     30
D16V10, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           8                            90
  CLUS_2                           8                            69
  CLUS_3                           2                            14
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 10(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        8      0      1     20
  DEL PEAK 10(6Q22.31) WILD-TYPE    106     76     45     32
D17V1, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            8                            106
  CLUS_2                            0                             76
  CLUS_3                            1                             45
  CLUS_4                           20                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        6     11      4
  DEL PEAK 10(6Q22.31) WILD-TYPE     57     47     99
D17V2, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            6                             57
  CLUS_2                           11                             47
  CLUS_3                            4                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        9      9      5
  DEL PEAK 10(6Q22.31) WILD-TYPE     66     75     42
D17V3, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            9                             66
  CLUS_2                            9                             75
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q22.31) MUTATED        1      2      1      4      7      1
  DEL PEAK 10(6Q22.31) WILD-TYPE     16     20     28     18     20     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 10(6Q22.31) MUTATED        2      5
  DEL PEAK 10(6Q22.31) WILD-TYPE     23     20
D17V4, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            2                             20
  CLUS_3                            1                             28
  CLUS_4                            4                             18
  CLUS_5                            7                             20
  CLUS_6                            1                             38
  CLUS_7                            2                             23
  CLUS_8                            5                             20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        5      3     21
  DEL PEAK 10(6Q22.31) WILD-TYPE     73    111     74
D17V5, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            5                             73
  CLUS_2                            3                            111
  CLUS_3                           21                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED       14      2      0     13
  DEL PEAK 10(6Q22.31) WILD-TYPE    111     70     44     33
D17V6, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           14                            111
  CLUS_2                            2                             70
  CLUS_3                            0                             44
  CLUS_4                           13                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        6     13     10
  DEL PEAK 10(6Q22.31) WILD-TYPE     83     90     86
D17V7, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           13                             90
  CLUS_3                           10                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        2      9      8     10
  DEL PEAK 10(6Q22.31) WILD-TYPE     53     57     73     76
D17V8, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                            9                             57
  CLUS_3                            8                             73
  CLUS_4                           10                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED        3      5     13
  DEL PEAK 10(6Q22.31) WILD-TYPE     66     76     58
D17V9, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            3                             66
  CLUS_2                            5                             76
  CLUS_3                           13                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED        7     11      3      0
  DEL PEAK 10(6Q22.31) WILD-TYPE     91     66     13     30
D17V10, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                            7                             91
  CLUS_2                           11                             66
  CLUS_3                            3                             13
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 11(6Q25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED        7      0      1     24
  DEL PEAK 11(6Q25.3) WILD-TYPE    107     76     45     28
D18V1, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           7                           107
  CLUS_2                           0                            76
  CLUS_3                           1                            45
  CLUS_4                          24                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        5     14      4
  DEL PEAK 11(6Q25.3) WILD-TYPE     58     44     99
D18V2, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           5                            58
  CLUS_2                          14                            44
  CLUS_3                           4                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED       10      9      6
  DEL PEAK 11(6Q25.3) WILD-TYPE     65     75     41
D18V3, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                          10                            65
  CLUS_2                           9                            75
  CLUS_3                           6                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q25.3) MUTATED        1      3      1      4      7      2
  DEL PEAK 11(6Q25.3) WILD-TYPE     16     19     28     18     20     37
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 11(6Q25.3) MUTATED        2      5
  DEL PEAK 11(6Q25.3) WILD-TYPE     23     20
D18V4, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           1                            16
  CLUS_2                           3                            19
  CLUS_3                           1                            28
  CLUS_4                           4                            18
  CLUS_5                           7                            20
  CLUS_6                           2                            37
  CLUS_7                           2                            23
  CLUS_8                           5                            20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        6      3     23
  DEL PEAK 11(6Q25.3) WILD-TYPE     72    111     72
D18V5, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           6                            72
  CLUS_2                           3                           111
  CLUS_3                          23                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED       18      2      0     12
  DEL PEAK 11(6Q25.3) WILD-TYPE    107     70     44     34
D18V6, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                          18                           107
  CLUS_2                           2                            70
  CLUS_3                           0                            44
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        7     15     10
  DEL PEAK 11(6Q25.3) WILD-TYPE     82     88     86
D18V7, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           7                            82
  CLUS_2                          15                            88
  CLUS_3                          10                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED        4      9      9     10
  DEL PEAK 11(6Q25.3) WILD-TYPE     51     57     72     76
D18V8, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           4                            51
  CLUS_2                           9                            57
  CLUS_3                           9                            72
  CLUS_4                          10                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q25.3) MUTATED        4      6     13
  DEL PEAK 11(6Q25.3) WILD-TYPE     65     75     58
D18V9, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           4                            65
  CLUS_2                           6                            75
  CLUS_3                          13                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q25.3) MUTATED        9     11      3      0
  DEL PEAK 11(6Q25.3) WILD-TYPE     89     66     13     30
D18V10, multiclass
        clus
vv       DEL PEAK 11(6Q25.3) MUTATED DEL PEAK 11(6Q25.3) WILD-TYPE
  CLUS_1                           9                            89
  CLUS_2                          11                            66
  CLUS_3                           3                            13
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 12(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED       11      2      1     26
  DEL PEAK 12(9P21.3) WILD-TYPE    103     74     45     26
D19V1, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          11                           103
  CLUS_2                           2                            74
  CLUS_3                           1                            45
  CLUS_4                          26                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED        9     20      2
  DEL PEAK 12(9P21.3) WILD-TYPE     54     38    101
D19V2, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           9                            54
  CLUS_2                          20                            38
  CLUS_3                           2                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED       14     10      5
  DEL PEAK 12(9P21.3) WILD-TYPE     61     74     42
D19V3, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          14                            61
  CLUS_2                          10                            74
  CLUS_3                           5                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(9P21.3) MUTATED        0      3      0      5      9      3
  DEL PEAK 12(9P21.3) WILD-TYPE     17     19     29     17     18     36
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(9P21.3) MUTATED        2      7
  DEL PEAK 12(9P21.3) WILD-TYPE     23     18
D19V4, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           3                            19
  CLUS_3                           0                            29
  CLUS_4                           5                            17
  CLUS_5                           9                            18
  CLUS_6                           3                            36
  CLUS_7                           2                            23
  CLUS_8                           7                            18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED        6      2     32
  DEL PEAK 12(9P21.3) WILD-TYPE     72    112     63
D19V5, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           6                            72
  CLUS_2                           2                           112
  CLUS_3                          32                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED       20      0      0     20
  DEL PEAK 12(9P21.3) WILD-TYPE    105     72     44     26
D19V6, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                          20                           105
  CLUS_2                           0                            72
  CLUS_3                           0                            44
  CLUS_4                          20                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED        3     16     21
  DEL PEAK 12(9P21.3) WILD-TYPE     86     87     75
D19V7, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           3                            86
  CLUS_2                          16                            87
  CLUS_3                          21                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED        4      6     10     20
  DEL PEAK 12(9P21.3) WILD-TYPE     51     60     71     66
D19V8, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           4                            51
  CLUS_2                           6                            60
  CLUS_3                          10                            71
  CLUS_4                          20                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9P21.3) MUTATED        8      4     21
  DEL PEAK 12(9P21.3) WILD-TYPE     61     77     50
D19V9, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           8                            61
  CLUS_2                           4                            77
  CLUS_3                          21                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9P21.3) MUTATED        7     19      7      0
  DEL PEAK 12(9P21.3) WILD-TYPE     91     58      9     30
D19V10, multiclass
        clus
vv       DEL PEAK 12(9P21.3) MUTATED DEL PEAK 12(9P21.3) WILD-TYPE
  CLUS_1                           7                            91
  CLUS_2                          19                            58
  CLUS_3                           7                             9
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 13(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        5      0      0     14
  DEL PEAK 13(10Q21.1) WILD-TYPE    109     76     46     38
D20V1, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            5                            109
  CLUS_2                            0                             76
  CLUS_3                            0                             46
  CLUS_4                           14                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        1     12      2
  DEL PEAK 13(10Q21.1) WILD-TYPE     62     46    101
D20V2, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                           12                             46
  CLUS_3                            2                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        7      6      1
  DEL PEAK 13(10Q21.1) WILD-TYPE     68     78     46
D20V3, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            7                             68
  CLUS_2                            6                             78
  CLUS_3                            1                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q21.1) MUTATED        1      0      0      4      4      0
  DEL PEAK 13(10Q21.1) WILD-TYPE     16     22     29     18     23     39
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 13(10Q21.1) MUTATED        1      4
  DEL PEAK 13(10Q21.1) WILD-TYPE     24     21
D20V4, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            0                             22
  CLUS_3                            0                             29
  CLUS_4                            4                             18
  CLUS_5                            4                             23
  CLUS_6                            0                             39
  CLUS_7                            1                             24
  CLUS_8                            4                             21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        3      1     15
  DEL PEAK 13(10Q21.1) WILD-TYPE     75    113     80
D20V5, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            3                             75
  CLUS_2                            1                            113
  CLUS_3                           15                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED       14      0      0      5
  DEL PEAK 13(10Q21.1) WILD-TYPE    111     72     44     41
D20V6, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                           14                            111
  CLUS_2                            0                             72
  CLUS_3                            0                             44
  CLUS_4                            5                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        6      5      8
  DEL PEAK 13(10Q21.1) WILD-TYPE     83     98     88
D20V7, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                            5                             98
  CLUS_3                            8                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        3      5      5      6
  DEL PEAK 13(10Q21.1) WILD-TYPE     52     61     76     80
D20V8, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            3                             52
  CLUS_2                            5                             61
  CLUS_3                            5                             76
  CLUS_4                            6                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q21.1) MUTATED        3      2      9
  DEL PEAK 13(10Q21.1) WILD-TYPE     66     79     62
D20V9, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            3                             66
  CLUS_2                            2                             79
  CLUS_3                            9                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q21.1) MUTATED        2     10      2      0
  DEL PEAK 13(10Q21.1) WILD-TYPE     96     67     14     30
D20V10, multiclass
        clus
vv       DEL PEAK 13(10Q21.1) MUTATED DEL PEAK 13(10Q21.1) WILD-TYPE
  CLUS_1                            2                             96
  CLUS_2                           10                             67
  CLUS_3                            2                             14
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 14(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        8      4      1     18
  DEL PEAK 14(11Q22.3) WILD-TYPE    106     72     45     34
D21V1, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            8                            106
  CLUS_2                            4                             72
  CLUS_3                            1                             45
  CLUS_4                           18                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        7     13      4
  DEL PEAK 14(11Q22.3) WILD-TYPE     56     45     99
D21V2, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            7                             56
  CLUS_2                           13                             45
  CLUS_3                            4                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED       11      9      5
  DEL PEAK 14(11Q22.3) WILD-TYPE     64     75     42
D21V3, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            9                             75
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q22.3) MUTATED        2      2      1      1      7      4
  DEL PEAK 14(11Q22.3) WILD-TYPE     15     20     28     21     20     35
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 14(11Q22.3) MUTATED        3      5
  DEL PEAK 14(11Q22.3) WILD-TYPE     22     20
D21V4, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                            2                             20
  CLUS_3                            1                             28
  CLUS_4                            1                             21
  CLUS_5                            7                             20
  CLUS_6                            4                             35
  CLUS_7                            3                             22
  CLUS_8                            5                             20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        4      6     21
  DEL PEAK 14(11Q22.3) WILD-TYPE     74    108     74
D21V5, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            4                             74
  CLUS_2                            6                            108
  CLUS_3                           21                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED       18      0      4      9
  DEL PEAK 14(11Q22.3) WILD-TYPE    107     72     40     37
D21V6, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                            0                             72
  CLUS_3                            4                             40
  CLUS_4                            9                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        6     11     14
  DEL PEAK 14(11Q22.3) WILD-TYPE     83     92     82
D21V7, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           11                             92
  CLUS_3                           14                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        4     10      5     12
  DEL PEAK 14(11Q22.3) WILD-TYPE     51     56     76     74
D21V8, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            4                             51
  CLUS_2                           10                             56
  CLUS_3                            5                             76
  CLUS_4                           12                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.3) MUTATED        6      3     15
  DEL PEAK 14(11Q22.3) WILD-TYPE     63     78     56
D21V9, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            6                             63
  CLUS_2                            3                             78
  CLUS_3                           15                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.3) MUTATED        6     16      2      0
  DEL PEAK 14(11Q22.3) WILD-TYPE     92     61     14     30
D21V10, multiclass
        clus
vv       DEL PEAK 14(11Q22.3) MUTATED DEL PEAK 14(11Q22.3) WILD-TYPE
  CLUS_1                            6                             92
  CLUS_2                           16                             61
  CLUS_3                            2                             14
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 15(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        6      4      0     19
  DEL PEAK 15(11Q23.3) WILD-TYPE    108     72     46     33
D22V1, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                            108
  CLUS_2                            4                             72
  CLUS_3                            0                             46
  CLUS_4                           19                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        6     14      3
  DEL PEAK 15(11Q23.3) WILD-TYPE     57     44    100
D22V2, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                             57
  CLUS_2                           14                             44
  CLUS_3                            3                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED       11      7      5
  DEL PEAK 15(11Q23.3) WILD-TYPE     64     77     42
D22V3, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            7                             77
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(11Q23.3) MUTATED        1      2      1      1      6      4
  DEL PEAK 15(11Q23.3) WILD-TYPE     16     20     28     21     21     35
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 15(11Q23.3) MUTATED        2      6
  DEL PEAK 15(11Q23.3) WILD-TYPE     23     19
D22V4, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            2                             20
  CLUS_3                            1                             28
  CLUS_4                            1                             21
  CLUS_5                            6                             21
  CLUS_6                            4                             35
  CLUS_7                            2                             23
  CLUS_8                            6                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        3      5     21
  DEL PEAK 15(11Q23.3) WILD-TYPE     75    109     74
D22V5, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            3                             75
  CLUS_2                            5                            109
  CLUS_3                           21                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED       18      0      3      8
  DEL PEAK 15(11Q23.3) WILD-TYPE    107     72     41     38
D22V6, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                            0                             72
  CLUS_3                            3                             41
  CLUS_4                            8                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        6     10     13
  DEL PEAK 15(11Q23.3) WILD-TYPE     83     93     83
D22V7, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           10                             93
  CLUS_3                           13                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        4      9      5     11
  DEL PEAK 15(11Q23.3) WILD-TYPE     51     57     76     75
D22V8, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            4                             51
  CLUS_2                            9                             57
  CLUS_3                            5                             76
  CLUS_4                           11                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11Q23.3) MUTATED        6      3     14
  DEL PEAK 15(11Q23.3) WILD-TYPE     63     78     57
D22V9, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                             63
  CLUS_2                            3                             78
  CLUS_3                           14                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11Q23.3) MUTATED        6     15      2      0
  DEL PEAK 15(11Q23.3) WILD-TYPE     92     62     14     30
D22V10, multiclass
        clus
vv       DEL PEAK 15(11Q23.3) MUTATED DEL PEAK 15(11Q23.3) WILD-TYPE
  CLUS_1                            6                             92
  CLUS_2                           15                             62
  CLUS_3                            2                             14
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 16(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED       20      1      2     28
  DEL PEAK 16(14Q11.2) WILD-TYPE     94     75     44     24
D23V1, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           20                             94
  CLUS_2                            1                             75
  CLUS_3                            2                             44
  CLUS_4                           28                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       14     16     11
  DEL PEAK 16(14Q11.2) WILD-TYPE     49     42     92
D23V2, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           14                             49
  CLUS_2                           16                             42
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       19     12      5
  DEL PEAK 16(14Q11.2) WILD-TYPE     56     72     42
D23V3, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           19                             56
  CLUS_2                           12                             72
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(14Q11.2) MUTATED        3      3      0      5      8      3
  DEL PEAK 16(14Q11.2) WILD-TYPE     14     19     29     17     19     36
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 16(14Q11.2) MUTATED        5      9
  DEL PEAK 16(14Q11.2) WILD-TYPE     20     16
D23V4, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            3                             19
  CLUS_3                            0                             29
  CLUS_4                            5                             17
  CLUS_5                            8                             19
  CLUS_6                            3                             36
  CLUS_7                            5                             20
  CLUS_8                            9                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       13      6     32
  DEL PEAK 16(14Q11.2) WILD-TYPE     65    108     63
D23V5, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           13                             65
  CLUS_2                            6                            108
  CLUS_3                           32                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED       26      2      4     19
  DEL PEAK 16(14Q11.2) WILD-TYPE     99     70     40     27
D23V6, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           26                             99
  CLUS_2                            2                             70
  CLUS_3                            4                             40
  CLUS_4                           19                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       13     18     20
  DEL PEAK 16(14Q11.2) WILD-TYPE     76     85     76
D23V7, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           18                             85
  CLUS_3                           20                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED       13      9     14     15
  DEL PEAK 16(14Q11.2) WILD-TYPE     42     57     67     71
D23V8, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           13                             42
  CLUS_2                            9                             57
  CLUS_3                           14                             67
  CLUS_4                           15                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(14Q11.2) MUTATED       11      8     19
  DEL PEAK 16(14Q11.2) WILD-TYPE     58     73     52
D23V9, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           11                             58
  CLUS_2                            8                             73
  CLUS_3                           19                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(14Q11.2) MUTATED       12     20      4      2
  DEL PEAK 16(14Q11.2) WILD-TYPE     86     57     12     28
D23V10, multiclass
        clus
vv       DEL PEAK 16(14Q11.2) MUTATED DEL PEAK 16(14Q11.2) WILD-TYPE
  CLUS_1                           12                             86
  CLUS_2                           20                             57
  CLUS_3                            4                             12
  CLUS_4                            2                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 17(14Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED       21      0      1     28
  DEL PEAK 17(14Q24.2) WILD-TYPE     93     76     45     24
D24V1, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           21                             93
  CLUS_2                            0                             76
  CLUS_3                            1                             45
  CLUS_4                           28                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       13     18      9
  DEL PEAK 17(14Q24.2) WILD-TYPE     50     40     94
D24V2, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           13                             50
  CLUS_2                           18                             40
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       20     10      6
  DEL PEAK 17(14Q24.2) WILD-TYPE     55     74     41
D24V3, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                           10                             74
  CLUS_3                            6                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(14Q24.2) MUTATED        3      4      0      4      9      3
  DEL PEAK 17(14Q24.2) WILD-TYPE     14     18     29     18     18     36
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 17(14Q24.2) MUTATED        4      9
  DEL PEAK 17(14Q24.2) WILD-TYPE     21     16
D24V4, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            4                             18
  CLUS_3                            0                             29
  CLUS_4                            4                             18
  CLUS_5                            9                             18
  CLUS_6                            3                             36
  CLUS_7                            4                             21
  CLUS_8                            9                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       11      5     34
  DEL PEAK 17(14Q24.2) WILD-TYPE     67    109     61
D24V5, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           11                             67
  CLUS_2                            5                            109
  CLUS_3                           34                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED       26      2      3     19
  DEL PEAK 17(14Q24.2) WILD-TYPE     99     70     41     27
D24V6, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           26                             99
  CLUS_2                            2                             70
  CLUS_3                            3                             41
  CLUS_4                           19                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       13     17     20
  DEL PEAK 17(14Q24.2) WILD-TYPE     76     86     76
D24V7, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           13                             76
  CLUS_2                           17                             86
  CLUS_3                           20                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED       13     10     12     15
  DEL PEAK 17(14Q24.2) WILD-TYPE     42     56     69     71
D24V8, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           13                             42
  CLUS_2                           10                             56
  CLUS_3                           12                             69
  CLUS_4                           15                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q24.2) MUTATED       12      7     20
  DEL PEAK 17(14Q24.2) WILD-TYPE     57     74     51
D24V9, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           12                             57
  CLUS_2                            7                             74
  CLUS_3                           20                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q24.2) MUTATED       13     21      4      1
  DEL PEAK 17(14Q24.2) WILD-TYPE     85     56     12     29
D24V10, multiclass
        clus
vv       DEL PEAK 17(14Q24.2) MUTATED DEL PEAK 17(14Q24.2) WILD-TYPE
  CLUS_1                           13                             85
  CLUS_2                           21                             56
  CLUS_3                            4                             12
  CLUS_4                            1                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 18(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED       12      0      3     20
  DEL PEAK 18(15Q13.3) WILD-TYPE    102     76     43     32
D25V1, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           12                            102
  CLUS_2                            0                             76
  CLUS_3                            3                             43
  CLUS_4                           20                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED       10     15      3
  DEL PEAK 18(15Q13.3) WILD-TYPE     53     43    100
D25V2, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           10                             53
  CLUS_2                           15                             43
  CLUS_3                            3                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED       15      8      5
  DEL PEAK 18(15Q13.3) WILD-TYPE     60     76     42
D25V3, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           15                             60
  CLUS_2                            8                             76
  CLUS_3                            5                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(15Q13.3) MUTATED        2      2      0      1      7      4
  DEL PEAK 18(15Q13.3) WILD-TYPE     15     20     29     21     20     35
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(15Q13.3) MUTATED        4      8
  DEL PEAK 18(15Q13.3) WILD-TYPE     21     17
D25V4, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                            2                             20
  CLUS_3                            0                             29
  CLUS_4                            1                             21
  CLUS_5                            7                             20
  CLUS_6                            4                             35
  CLUS_7                            4                             21
  CLUS_8                            8                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED        7      3     25
  DEL PEAK 18(15Q13.3) WILD-TYPE     71    111     70
D25V5, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            7                             71
  CLUS_2                            3                            111
  CLUS_3                           25                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED       17      2      1     15
  DEL PEAK 18(15Q13.3) WILD-TYPE    108     70     43     31
D25V6, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           17                            108
  CLUS_2                            2                             70
  CLUS_3                            1                             43
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED        6     12     17
  DEL PEAK 18(15Q13.3) WILD-TYPE     83     91     79
D25V7, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            6                             83
  CLUS_2                           12                             91
  CLUS_3                           17                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED        5      7      9     14
  DEL PEAK 18(15Q13.3) WILD-TYPE     50     59     72     72
D25V8, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            5                             50
  CLUS_2                            7                             59
  CLUS_3                            9                             72
  CLUS_4                           14                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q13.3) MUTATED        8      6     15
  DEL PEAK 18(15Q13.3) WILD-TYPE     61     75     56
D25V9, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                            8                             61
  CLUS_2                            6                             75
  CLUS_3                           15                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q13.3) MUTATED       11     12      6      0
  DEL PEAK 18(15Q13.3) WILD-TYPE     87     65     10     30
D25V10, multiclass
        clus
vv       DEL PEAK 18(15Q13.3) MUTATED DEL PEAK 18(15Q13.3) WILD-TYPE
  CLUS_1                           11                             87
  CLUS_2                           12                             65
  CLUS_3                            6                             10
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 19(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        4      0      0      8
  DEL PEAK 19(16Q24.1) WILD-TYPE    110     76     46     44
D26V1, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            4                            110
  CLUS_2                            0                             76
  CLUS_3                            0                             46
  CLUS_4                            8                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        1      9      0
  DEL PEAK 19(16Q24.1) WILD-TYPE     62     49    103
D26V2, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                            9                             49
  CLUS_3                            0                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        3      2      4
  DEL PEAK 19(16Q24.1) WILD-TYPE     72     82     43
D26V3, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            3                             72
  CLUS_2                            2                             82
  CLUS_3                            4                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(16Q24.1) MUTATED        0      1      0      1      3      1
  DEL PEAK 19(16Q24.1) WILD-TYPE     17     21     29     21     24     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 19(16Q24.1) MUTATED        1      2
  DEL PEAK 19(16Q24.1) WILD-TYPE     24     23
D26V4, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            0                             17
  CLUS_2                            1                             21
  CLUS_3                            0                             29
  CLUS_4                            1                             21
  CLUS_5                            3                             24
  CLUS_6                            1                             38
  CLUS_7                            1                             24
  CLUS_8                            2                             23
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        3      0      9
  DEL PEAK 19(16Q24.1) WILD-TYPE     75    114     86
D26V5, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            3                             75
  CLUS_2                            0                            114
  CLUS_3                            9                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        8      0      0      4
  DEL PEAK 19(16Q24.1) WILD-TYPE    117     72     44     42
D26V6, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            8                            117
  CLUS_2                            0                             72
  CLUS_3                            0                             44
  CLUS_4                            4                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        4      4      4
  DEL PEAK 19(16Q24.1) WILD-TYPE     85     99     92
D26V7, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            4                             85
  CLUS_2                            4                             99
  CLUS_3                            4                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        2      5      0      5
  DEL PEAK 19(16Q24.1) WILD-TYPE     53     61     81     81
D26V8, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                            5                             61
  CLUS_3                            0                             81
  CLUS_4                            5                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q24.1) MUTATED        5      0      6
  DEL PEAK 19(16Q24.1) WILD-TYPE     64     81     65
D26V9, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            5                             64
  CLUS_2                            0                             81
  CLUS_3                            6                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q24.1) MUTATED        3      5      3      0
  DEL PEAK 19(16Q24.1) WILD-TYPE     95     72     13     30
D26V10, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) MUTATED DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                            3                             95
  CLUS_2                            5                             72
  CLUS_3                            3                             13
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 20(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        4      4      1     14
  DEL PEAK 20(19P13.3) WILD-TYPE    110     72     45     38
D27V1, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            4                            110
  CLUS_2                            4                             72
  CLUS_3                            1                             45
  CLUS_4                           14                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        3      9      5
  DEL PEAK 20(19P13.3) WILD-TYPE     60     49     98
D27V2, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            3                             60
  CLUS_2                            9                             49
  CLUS_3                            5                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        6      6      2
  DEL PEAK 20(19P13.3) WILD-TYPE     69     78     45
D27V3, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            6                             69
  CLUS_2                            6                             78
  CLUS_3                            2                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(19P13.3) MUTATED        1      2      0      1      5      2
  DEL PEAK 20(19P13.3) WILD-TYPE     16     20     29     21     22     37
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 20(19P13.3) MUTATED        2      1
  DEL PEAK 20(19P13.3) WILD-TYPE     23     24
D27V4, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            2                             20
  CLUS_3                            0                             29
  CLUS_4                            1                             21
  CLUS_5                            5                             22
  CLUS_6                            2                             37
  CLUS_7                            2                             23
  CLUS_8                            1                             24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        7      4     12
  DEL PEAK 20(19P13.3) WILD-TYPE     71    110     83
D27V5, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            7                             71
  CLUS_2                            4                            110
  CLUS_3                           12                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED       18      1      2      2
  DEL PEAK 20(19P13.3) WILD-TYPE    107     71     42     44
D27V6, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                           18                            107
  CLUS_2                            1                             71
  CLUS_3                            2                             42
  CLUS_4                            2                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        7      5     11
  DEL PEAK 20(19P13.3) WILD-TYPE     82     98     85
D27V7, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            7                             82
  CLUS_2                            5                             98
  CLUS_3                           11                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        6      7      3      7
  DEL PEAK 20(19P13.3) WILD-TYPE     49     59     78     79
D27V8, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            6                             49
  CLUS_2                            7                             59
  CLUS_3                            3                             78
  CLUS_4                            7                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(19P13.3) MUTATED        5      4     11
  DEL PEAK 20(19P13.3) WILD-TYPE     64     77     60
D27V9, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            5                             64
  CLUS_2                            4                             77
  CLUS_3                           11                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(19P13.3) MUTATED        8     12      0      0
  DEL PEAK 20(19P13.3) WILD-TYPE     90     65     16     30
D27V10, multiclass
        clus
vv       DEL PEAK 20(19P13.3) MUTATED DEL PEAK 20(19P13.3) WILD-TYPE
  CLUS_1                            8                             90
  CLUS_2                           12                             65
  CLUS_3                            0                             16
  CLUS_4                            0                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 21(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        2      3      2     12
  DEL PEAK 21(19Q13.42) WILD-TYPE    112     73     44     40
D28V1, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             2                             112
  CLUS_2                             3                              73
  CLUS_3                             2                              44
  CLUS_4                            12                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        3      9      5
  DEL PEAK 21(19Q13.42) WILD-TYPE     60     49     98
D28V2, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             3                              60
  CLUS_2                             9                              49
  CLUS_3                             5                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        5      6      4
  DEL PEAK 21(19Q13.42) WILD-TYPE     70     78     43
D28V3, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             5                              70
  CLUS_2                             6                              78
  CLUS_3                             4                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(19Q13.42) MUTATED        1      2      0      2      5      4
  DEL PEAK 21(19Q13.42) WILD-TYPE     16     20     29     20     22     35
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 21(19Q13.42) MUTATED        1      0
  DEL PEAK 21(19Q13.42) WILD-TYPE     24     25
D28V4, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             1                              16
  CLUS_2                             2                              20
  CLUS_3                             0                              29
  CLUS_4                             2                              20
  CLUS_5                             5                              22
  CLUS_6                             4                              35
  CLUS_7                             1                              24
  CLUS_8                             0                              25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        6      2     11
  DEL PEAK 21(19Q13.42) WILD-TYPE     72    112     84
D28V5, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             6                              72
  CLUS_2                             2                             112
  CLUS_3                            11                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED       15      0      1      3
  DEL PEAK 21(19Q13.42) WILD-TYPE    110     72     43     43
D28V6, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                            15                             110
  CLUS_2                             0                              72
  CLUS_3                             1                              43
  CLUS_4                             3                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        4      6      9
  DEL PEAK 21(19Q13.42) WILD-TYPE     85     97     87
D28V7, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             4                              85
  CLUS_2                             6                              97
  CLUS_3                             9                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        4      6      2      7
  DEL PEAK 21(19Q13.42) WILD-TYPE     51     60     79     79
D28V8, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             4                              51
  CLUS_2                             6                              60
  CLUS_3                             2                              79
  CLUS_4                             7                              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(19Q13.42) MUTATED        6      3      8
  DEL PEAK 21(19Q13.42) WILD-TYPE     63     78     63
D28V9, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             6                              63
  CLUS_2                             3                              78
  CLUS_3                             8                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(19Q13.42) MUTATED        9      7      1      0
  DEL PEAK 21(19Q13.42) WILD-TYPE     89     70     15     30
D28V10, multiclass
        clus
vv       DEL PEAK 21(19Q13.42) MUTATED DEL PEAK 21(19Q13.42) WILD-TYPE
  CLUS_1                             9                              89
  CLUS_2                             7                              70
  CLUS_3                             1                              15
  CLUS_4                             0                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 22(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED       23      6      2     32
  DEL PEAK 22(22Q12.2) WILD-TYPE     91     70     44     20
D29V1, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           23                             91
  CLUS_2                            6                             70
  CLUS_3                            2                             44
  CLUS_4                           32                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED        9     32     11
  DEL PEAK 22(22Q12.2) WILD-TYPE     54     26     92
D29V2, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                            9                             54
  CLUS_2                           32                             26
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       16     19     13
  DEL PEAK 22(22Q12.2) WILD-TYPE     59     65     34
D29V3, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           19                             65
  CLUS_3                           13                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(22Q12.2) MUTATED        1      3      3      7     14      9
  DEL PEAK 22(22Q12.2) WILD-TYPE     16     19     26     15     13     30
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(22Q12.2) MUTATED        4      7
  DEL PEAK 22(22Q12.2) WILD-TYPE     21     18
D29V4, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            3                             19
  CLUS_3                            3                             26
  CLUS_4                            7                             15
  CLUS_5                           14                             13
  CLUS_6                            9                             30
  CLUS_7                            4                             21
  CLUS_8                            7                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       15      8     40
  DEL PEAK 22(22Q12.2) WILD-TYPE     63    106     55
D29V5, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           15                             63
  CLUS_2                            8                            106
  CLUS_3                           40                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED       37      6      2     18
  DEL PEAK 22(22Q12.2) WILD-TYPE     88     66     42     28
D29V6, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           37                             88
  CLUS_2                            6                             66
  CLUS_3                            2                             42
  CLUS_4                           18                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       19     23     21
  DEL PEAK 22(22Q12.2) WILD-TYPE     70     80     75
D29V7, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           19                             70
  CLUS_2                           23                             80
  CLUS_3                           21                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED       16     13     14     20
  DEL PEAK 22(22Q12.2) WILD-TYPE     39     53     67     66
D29V8, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           16                             39
  CLUS_2                           13                             53
  CLUS_3                           14                             67
  CLUS_4                           20                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q12.2) MUTATED       18     11     21
  DEL PEAK 22(22Q12.2) WILD-TYPE     51     70     50
D29V9, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           18                             51
  CLUS_2                           11                             70
  CLUS_3                           21                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q12.2) MUTATED       21     21      7      1
  DEL PEAK 22(22Q12.2) WILD-TYPE     77     56      9     29
D29V10, multiclass
        clus
vv       DEL PEAK 22(22Q12.2) MUTATED DEL PEAK 22(22Q12.2) WILD-TYPE
  CLUS_1                           21                             77
  CLUS_2                           21                             56
  CLUS_3                            7                              9
  CLUS_4                            1                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 23(XP11.4) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED       12      1      1     20
  DEL PEAK 23(XP11.4) WILD-TYPE    102     75     45     32
D30V1, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          12                           102
  CLUS_2                           1                            75
  CLUS_3                           1                            45
  CLUS_4                          20                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED        4     18      2
  DEL PEAK 23(XP11.4) WILD-TYPE     59     40    101
D30V2, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           4                            59
  CLUS_2                          18                            40
  CLUS_3                           2                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED       11      8      3
  DEL PEAK 23(XP11.4) WILD-TYPE     64     76     44
D30V3, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          11                            64
  CLUS_2                           8                            76
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(XP11.4) MUTATED        0      1      1      3      8      1
  DEL PEAK 23(XP11.4) WILD-TYPE     17     21     28     19     19     38
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 23(XP11.4) MUTATED        2      6
  DEL PEAK 23(XP11.4) WILD-TYPE     23     19
D30V4, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           1                            21
  CLUS_3                           1                            28
  CLUS_4                           3                            19
  CLUS_5                           8                            19
  CLUS_6                           1                            38
  CLUS_7                           2                            23
  CLUS_8                           6                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED        5      3     26
  DEL PEAK 23(XP11.4) WILD-TYPE     73    111     69
D30V5, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           5                            73
  CLUS_2                           3                           111
  CLUS_3                          26                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED       19      1      2     12
  DEL PEAK 23(XP11.4) WILD-TYPE    106     71     42     34
D30V6, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          19                           106
  CLUS_2                           1                            71
  CLUS_3                           2                            42
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED       11     10     13
  DEL PEAK 23(XP11.4) WILD-TYPE     78     93     83
D30V7, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                          11                            78
  CLUS_2                          10                            93
  CLUS_3                          13                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED        7     10      5     12
  DEL PEAK 23(XP11.4) WILD-TYPE     48     56     76     74
D30V8, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           7                            48
  CLUS_2                          10                            56
  CLUS_3                           5                            76
  CLUS_4                          12                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP11.4) MUTATED        9      2     14
  DEL PEAK 23(XP11.4) WILD-TYPE     60     79     57
D30V9, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           9                            60
  CLUS_2                           2                            79
  CLUS_3                          14                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP11.4) MUTATED        5     16      4      0
  DEL PEAK 23(XP11.4) WILD-TYPE     93     61     12     30
D30V10, multiclass
        clus
vv       DEL PEAK 23(XP11.4) MUTATED DEL PEAK 23(XP11.4) WILD-TYPE
  CLUS_1                           5                            93
  CLUS_2                          16                            61
  CLUS_3                           4                            12
  CLUS_4                           0                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 24(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED       10      0      1     17
  DEL PEAK 24(XQ28) WILD-TYPE    104     76     45     35
D31V1, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        10                         104
  CLUS_2                         0                          76
  CLUS_3                         1                          45
  CLUS_4                        17                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        3     13      3
  DEL PEAK 24(XQ28) WILD-TYPE     60     45    100
D31V2, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         3                          60
  CLUS_2                        13                          45
  CLUS_3                         3                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        7      8      3
  DEL PEAK 24(XQ28) WILD-TYPE     68     76     44
D31V3, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         7                          68
  CLUS_2                         8                          76
  CLUS_3                         3                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(XQ28) MUTATED        1      1      1      3      7      1      2
  DEL PEAK 24(XQ28) WILD-TYPE     16     21     28     19     20     38     23
                             vv
clus                          CLUS_8
  DEL PEAK 24(XQ28) MUTATED        2
  DEL PEAK 24(XQ28) WILD-TYPE     23
D31V4, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         1                          16
  CLUS_2                         1                          21
  CLUS_3                         1                          28
  CLUS_4                         3                          19
  CLUS_5                         7                          20
  CLUS_6                         1                          38
  CLUS_7                         2                          23
  CLUS_8                         2                          23
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        4      3     21
  DEL PEAK 24(XQ28) WILD-TYPE     74    111     74
D31V5, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         4                          74
  CLUS_2                         3                         111
  CLUS_3                        21                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED       15      2      1     10
  DEL PEAK 24(XQ28) WILD-TYPE    110     70     43     36
D31V6, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        15                         110
  CLUS_2                         2                          70
  CLUS_3                         1                          43
  CLUS_4                        10                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        7     10     11
  DEL PEAK 24(XQ28) WILD-TYPE     82     93     85
D31V7, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         7                          82
  CLUS_2                        10                          93
  CLUS_3                        11                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED        5      8      6      9
  DEL PEAK 24(XQ28) WILD-TYPE     50     58     75     77
D31V8, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         5                          50
  CLUS_2                         8                          58
  CLUS_3                         6                          75
  CLUS_4                         9                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(XQ28) MUTATED        6      2     12
  DEL PEAK 24(XQ28) WILD-TYPE     63     79     59
D31V9, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         6                          63
  CLUS_2                         2                          79
  CLUS_3                        12                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(XQ28) MUTATED        5     11      4      0
  DEL PEAK 24(XQ28) WILD-TYPE     93     66     12     30
D31V10, multiclass
        clus
vv       DEL PEAK 24(XQ28) MUTATED DEL PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         5                          93
  CLUS_2                        11                          66
  CLUS_3                         4                          12
  CLUS_4                         0                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
