		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	9 (3%)	279	9.9999e-06	0.00708	9.9999e-05	0.0586	0.61095	1	0.082179	1	0.00065999	0.36	0.02569	1	0.4787	1	0.083909	1	0.04708	1	0.02884	1
1q gain	17 (6%)	271	9.9999e-06	0.00708	9.9999e-06	0.00708	0.93151	1	0.061919	1	9.9999e-06	0.00708	0.00191	0.993	0.51654	1	0.00025	0.141	0.0063499	1	0.01145	1
2p gain	42 (15%)	246	9.9999e-06	0.00708	0.02073	1	0.82173	1	0.10005	1	0.61749	1	0.063999	1	0.12255	1	0.072899	1	0.78265	1	0.16858	1
2q gain	47 (16%)	241	9.9999e-06	0.00708	0.02977	1	0.97055	1	0.01645	1	0.7288	1	0.02776	1	0.21911	1	0.053949	1	0.41803	1	0.40709	1
3p gain	74 (26%)	214	9.9999e-06	0.00708	0.00034	0.189	0.19985	1	0.00011	0.0641	9.9999e-06	0.00708	2e-05	0.0122	0.04091	1	6.9999e-05	0.0413	0.090619	1	0.01576	1
3q gain	94 (33%)	194	9.9999e-06	0.00708	0.01226	1	0.23227	1	0.01691	1	9.9999e-06	0.00708	0.00014	0.0805	0.0094299	1	0.00016	0.0915	0.52129	1	0.01331	1
4p gain	10 (3%)	278	0.24469	1	0.55208	1	0.79087	1	0.36635	1	0.19186	1	0.57202	1	0.61446	1	0.92121	1	0.83503	1	0.94943	1
4q gain	9 (3%)	279	0.51813	1	0.55238	1	0.79149	1	0.36644	1	0.36091	1	0.64975	1	0.27785	1	0.85618	1	0.49272	1	1	1
5p gain	33 (11%)	255	9.9999e-06	0.00708	0.00217	1	0.64915	1	0.44715	1	0.0075099	1	0.00242	1	0.57152	1	0.11802	1	0.31018	1	0.25585	1
5q gain	31 (11%)	257	9.9999e-06	0.00708	0.00083999	0.455	0.57352	1	0.28104	1	0.00162	0.857	0.00073999	0.403	0.31388	1	0.15355	1	0.45393	1	0.37422	1
6p gain	10 (3%)	278	0.04823	1	0.01225	1	0.071599	1	0.34217	1	0.0074499	1	0.28382	1	0.16648	1	0.2515	1	0.1022	1	0.059769	1
6q gain	8 (3%)	280	0.02207	1	0.0079299	1	0.5428	1	0.28992	1	0.04776	1	0.48424	1	0.22641	1	0.64889	1	0.12693	1	0.086389	1
7p gain	172 (60%)	116	9.9999e-06	0.00708	9.9999e-06	0.00708	0.00313	1	2e-05	0.0122	9.9999e-06	0.00708	9.9999e-06	0.00708	0.04891	1	9.9999e-06	0.00708	7.9999e-05	0.0471	9.9999e-06	0.00708
7q gain	173 (60%)	115	9.9999e-06	0.00708	9.9999e-06	0.00708	0.0065899	1	2e-05	0.0122	9.9999e-06	0.00708	9.9999e-06	0.00708	0.070499	1	9.9999e-06	0.00708	0.00012	0.0695	2e-05	0.0122
8p gain	20 (7%)	268	0.74777	1	0.00331	1	0.16305	1	0.58405	1	0.11056	1	0.13715	1	0.4553	1	0.53854	1	0.40513	1	0.24099	1
8q gain	25 (9%)	263	0.1265	1	3e-05	0.0181	0.22739	1	0.65183	1	0.0179	1	0.14581	1	0.15068	1	0.10981	1	0.04668	1	0.13502	1
9p gain	3 (1%)	285	0.87649	1	NA	NA	NA	NA	NA	NA	0.36467	1	0.20368	1	0.40968	1	0.37159	1	0.29803	1	0.0144	1
10p gain	9 (3%)	279	0.00107	0.575	0.070249	1	1	1	0.42986	1	0.058249	1	0.30583	1	0.14347	1	0.68382	1	0.89164	1	0.18612	1
10q gain	9 (3%)	279	0.00111	0.594	0.070479	1	1	1	0.42987	1	0.057959	1	0.30671	1	0.14128	1	0.68496	1	0.89379	1	0.18581	1
11p gain	11 (4%)	277	0.00033	0.184	0.01532	1	0.91065	1	0.02438	1	0.12135	1	0.00288	1	0.92816	1	0.94964	1	0.81941	1	0.22411	1
11q gain	10 (3%)	278	9.9999e-06	0.00708	0.00242	1	0.75394	1	0.04228	1	0.03435	1	0.02617	1	0.84895	1	1	1	0.81792	1	0.22606	1
12p gain	112 (39%)	176	0.0052199	1	0.15319	1	0.0242	1	0.17988	1	0.01524	1	0.00249	1	0.092189	1	0.01673	1	0.66204	1	0.070399	1
12q gain	112 (39%)	176	0.0056699	1	0.1512	1	0.02407	1	0.1815	1	0.01506	1	0.00209	1	0.091699	1	0.01686	1	0.66436	1	0.068949	1
13q gain	28 (10%)	260	0.22348	1	0.85433	1	1	1	0.60834	1	0.1398	1	0.78549	1	0.879	1	0.46242	1	0.31728	1	0.52299	1
14q gain	3 (1%)	285	0.24227	1	0.01635	1	0.45046	1	0.85161	1	0.055389	1	0.20283	1	1	1	0.36961	1	0.29978	1	0.01367	1
15q gain	5 (2%)	283	0.00017	0.0971	0.02634	1	0.20728	1	0.38284	1	0.53163	1	0.37624	1	0.44835	1	0.76952	1	NA	NA	NA	NA
16p gain	153 (53%)	135	9.9999e-06	0.00708	0.085089	1	0.8466	1	0.02113	1	9.9999e-06	0.00708	9.9999e-06	0.00708	0.00057999	0.318	9.9999e-06	0.00708	0.0097999	1	0.00011	0.0641
16q gain	148 (51%)	140	9.9999e-06	0.00708	0.0422	1	0.9064	1	0.0201	1	9.9999e-06	0.00708	9.9999e-06	0.00708	9.9999e-06	0.00708	9.9999e-06	0.00708	0.00223	1	5e-05	0.0298
17p gain	174 (60%)	114	9.9999e-06	0.00708	9.9999e-06	0.00708	0.00215	1	9.9999e-06	0.00708	9.9999e-06	0.00708	9.9999e-06	0.00708	0.00389	1	2e-05	0.0122	9.9999e-06	0.00708	9.9999e-06	0.00708
17q gain	191 (66%)	97	9.9999e-06	0.00708	9.9999e-06	0.00708	0.0241	1	2e-05	0.0122	9.9999e-06	0.00708	9.9999e-06	0.00708	0.03446	1	4e-05	0.0239	0.00022	0.125	5e-05	0.0298
18p gain	12 (4%)	276	0.00247	1	0.24378	1	0.52572	1	0.13369	1	0.65491	1	0.4753	1	0.19027	1	0.51181	1	0.46482	1	0.604	1
18q gain	9 (3%)	279	0.00316	1	0.10742	1	0.26167	1	0.057569	1	0.69377	1	0.072859	1	0.40044	1	0.44673	1	0.32151	1	0.083699	1
19p gain	4 (1%)	284	0.00168	0.887	0.28177	1	0.27734	1	0.24286	1	0.13649	1	0.23552	1	1	1	0.47851	1	1	1	0.33943	1
19q gain	4 (1%)	284	0.00175	0.915	0.2806	1	0.27889	1	0.24423	1	0.13874	1	0.23411	1	1	1	0.47643	1	1	1	0.33744	1
20p gain	99 (34%)	189	3e-05	0.0181	0.097049	1	0.01669	1	0.0060999	1	0.0072599	1	0.00181	0.943	0.01224	1	0.00359	1	0.17803	1	0.061079	1
20q gain	101 (35%)	187	0.00015	0.0861	0.11287	1	0.02723	1	0.01078	1	0.0289	1	0.00449	1	0.01896	1	0.0052299	1	0.33946	1	0.04336	1
21q gain	19 (7%)	269	0.51629	1	0.40321	1	0.77955	1	0.452	1	0.22201	1	0.30658	1	0.14851	1	0.21768	1	0.50657	1	0.14057	1
22q gain	5 (2%)	283	0.0089799	1	1	1	1	1	0.31145	1	1	1	0.68075	1	0.45106	1	0.29932	1	0.86763	1	1	1
xq gain	91 (32%)	197	9.9999e-06	0.00708	0.00025	0.141	0.28332	1	0.068559	1	9.9999e-06	0.00708	9.9999e-06	0.00708	0.01103	1	9.9999e-06	0.00708	0.01099	1	0.00394	1
1p loss	30 (10%)	258	9.9999e-06	0.00708	0.069639	1	0.47755	1	0.16783	1	0.00026	0.146	0.0016	0.848	0.35504	1	0.17697	1	0.8362	1	0.088319	1
1q loss	21 (7%)	267	3e-04	0.168	0.6192	1	1	1	0.065839	1	0.22359	1	0.01477	1	0.29265	1	0.084879	1	0.56995	1	0.19923	1
2p loss	5 (2%)	283	0.27969	1	0.01694	1	0.1781	1	0.56743	1	0.04962	1	0.20946	1	0.23739	1	0.86966	1	NA	NA	NA	NA
2q loss	3 (1%)	285	0.66035	1	NA	NA	NA	NA	NA	NA	0.36612	1	0.20318	1	0.52929	1	1	1	NA	NA	NA	NA
3p loss	22 (8%)	266	9.9999e-06	0.00708	3e-05	0.0181	0.26923	1	0.0053599	1	9.9999e-06	0.00708	9.9999e-05	0.0586	0.43066	1	0.02716	1	0.04714	1	0.01506	1
3q loss	7 (2%)	281	2e-05	0.0122	0.02572	1	0.37003	1	0.088209	1	0.0064699	1	0.02685	1	0.40236	1	0.83871	1	0.39552	1	0.35668	1
4p loss	25 (9%)	263	9.9999e-06	0.00708	9.9999e-06	0.00708	0.30748	1	0.00091999	0.498	9.9999e-06	0.00708	9.9999e-06	0.00708	0.26129	1	0.10871	1	0.0063499	1	9.9999e-06	0.00708
4q loss	26 (9%)	262	9.9999e-06	0.00708	9.9999e-06	0.00708	0.51019	1	0.0027	1	9.9999e-06	0.00708	3e-05	0.0181	0.37931	1	0.16992	1	0.0064999	1	5.9999e-05	0.0355
5p loss	8 (3%)	280	0.17007	1	0.01239	1	0.44216	1	0.0153	1	0.0086699	1	0.00023	0.13	0.072309	1	0.03942	1	0.01288	1	0.00017	0.0971
5q loss	8 (3%)	280	0.1689	1	0.01211	1	0.87461	1	0.01541	1	0.0087599	1	0.00037	0.205	0.071679	1	0.0398	1	0.01229	1	9.9999e-06	0.00708
6p loss	21 (7%)	267	9.9999e-06	0.00708	0.093679	1	0.54859	1	0.31648	1	0.0060099	1	0.00013	0.0749	0.01948	1	0.051639	1	0.4721	1	0.10992	1
6q loss	26 (9%)	262	9.9999e-06	0.00708	0.01612	1	0.95486	1	0.20388	1	0.00015	0.0861	0.00011	0.0641	0.30679	1	0.27786	1	0.1013	1	0.092519	1
8p loss	16 (6%)	272	0.0017	0.894	0.3832	1	0.23269	1	0.17734	1	0.0017	0.894	0.00334	1	0.89942	1	0.75598	1	0.37003	1	0.31498	1
8q loss	9 (3%)	279	0.00265	1	0.76643	1	0.54582	1	0.01361	1	0.00156	0.828	0.00175	0.915	0.91223	1	0.78411	1	0.68603	1	0.55272	1
9p loss	33 (11%)	255	9.9999e-06	0.00708	2e-05	0.0122	0.48104	1	0.01149	1	9.9999e-06	0.00708	9.9999e-06	0.00708	0.0064899	1	0.25167	1	0.0059399	1	0.00066999	0.365
9q loss	34 (12%)	254	9.9999e-06	0.00708	9.9999e-06	0.00708	0.080609	1	0.01581	1	9.9999e-06	0.00708	9.9999e-06	0.00708	0.00401	1	0.13416	1	0.00124	0.661	0.00011	0.0641
10p loss	16 (6%)	272	9.9999e-06	0.00708	0.00012	0.0695	0.65419	1	0.066629	1	0.00017	0.0971	0.00264	1	0.39794	1	0.91489	1	0.01901	1	0.0061499	1
10q loss	17 (6%)	271	9.9999e-06	0.00708	0.00093999	0.508	0.51615	1	0.01188	1	3e-05	0.0181	0.00172	0.901	0.083529	1	0.8622	1	0.002	1	0.00107	0.575
11p loss	18 (6%)	270	9.9999e-06	0.00708	0.00043	0.237	0.69244	1	0.62512	1	0.00021	0.119	0.00232	1	0.29596	1	0.063839	1	0.0192	1	0.0067399	1
11q loss	21 (7%)	267	9.9999e-06	0.00708	0.00054999	0.302	0.16055	1	0.11862	1	0.00012	0.0695	0.00135	0.718	0.65874	1	0.10133	1	0.03639	1	0.03972	1
13q loss	24 (8%)	264	9.9999e-06	0.00708	9.9999e-06	0.00708	0.58345	1	5e-05	0.0298	9.9999e-06	0.00708	9.9999e-06	0.00708	0.04274	1	0.0072599	1	0.00395	1	5.9999e-05	0.0355
14q loss	47 (16%)	241	9.9999e-06	0.00708	0.00218	1	0.0085999	1	0.00028	0.157	9.9999e-06	0.00708	9.9999e-06	0.00708	0.20699	1	0.77484	1	0.0041	1	0.0064399	1
15q loss	31 (11%)	257	9.9999e-06	0.00708	0.00055999	0.307	0.11488	1	0.0060399	1	3e-05	0.0181	9.9999e-06	0.00708	0.093819	1	0.63595	1	0.066809	1	0.00267	1
16p loss	4 (1%)	284	0.04232	1	0.00428	1	1	1	0.48686	1	0.0169	1	0.03319	1	0.83955	1	0.2038	1	0.11381	1	0.01248	1
16q loss	7 (2%)	281	0.00041	0.227	0.00025	0.141	1	1	0.32738	1	0.00036	0.2	0.095129	1	0.40437	1	0.23493	1	0.03271	1	0.052909	1
17p loss	12 (4%)	276	0.0038	1	5e-05	0.0298	0.48519	1	0.1101	1	0.00021	0.119	0.00307	1	0.53569	1	0.26723	1	0.0065199	1	0.00117	0.625
18p loss	42 (15%)	246	9.9999e-06	0.00708	9.9999e-06	0.00708	0.02186	1	0.00169	0.891	9.9999e-06	0.00708	9.9999e-06	0.00708	0.23381	1	0.00105	0.565	0.02012	1	0.00062999	0.345
18q loss	45 (16%)	243	9.9999e-06	0.00708	9.9999e-06	0.00708	0.066179	1	7.9999e-05	0.0471	9.9999e-06	0.00708	9.9999e-06	0.00708	0.12676	1	0.00080999	0.44	0.0071799	1	0.00032	0.179
19p loss	17 (6%)	271	9.9999e-05	0.0586	0.0059299	1	0.91729	1	0.10552	1	0.02209	1	0.00426	1	0.22616	1	0.10257	1	0.089089	1	0.057839	1
19q loss	16 (6%)	272	9.9999e-06	0.00708	0.01578	1	0.61991	1	0.03573	1	0.0091999	1	0.01387	1	0.40067	1	0.15018	1	0.091279	1	0.27832	1
21q loss	43 (15%)	245	0.00047	0.259	0.35438	1	0.24742	1	0.26803	1	0.15999	1	0.23614	1	0.62287	1	0.22247	1	0.80836	1	0.085879	1
22q loss	60 (21%)	228	9.9999e-06	0.00708	9.9999e-06	0.00708	0.78058	1	0.0087399	1	9.9999e-06	0.00708	9.9999e-06	0.00708	0.98311	1	0.45137	1	0.055499	1	0.01095	1
xq loss	30 (10%)	258	9.9999e-06	0.00708	8.9999e-05	0.0528	0.59584	1	0.0098999	1	9.9999e-06	0.00708	0.00101	0.544	0.27132	1	0.4505	1	0.04938	1	0.02106	1
