		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (8%)	471	NA	NA	NA	NA	0.00056999	0.234	0.0074399	1	0.2495	1	0.88299	1	0.00154	0.591	0.0143	1	0.57374	1	0.089139	1	0.15418	1	0.31298	1
amp_1q32.1	43 (8%)	470	NA	NA	NA	NA	9.9999e-06	0.00604	9.9999e-06	0.00604	0.16396	1	0.35399	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.25205	1	2e-05	0.00944	0.00137	0.534	9.9999e-06	0.00604
amp_2p24.3	24 (5%)	489	0.61782	1	0.58305	1	0.00243	0.904	0.03333	1	0.49134	1	1	1	0.02452	1	0.01423	1	0.72049	1	0.03438	1	0.44043	1	0.11524	1
amp_3q26.33	21 (4%)	492	1	1	0.58163	1	9.9999e-06	0.00604	0.00122	0.477	0.14745	1	0.84931	1	0.00071999	0.29	0.00028	0.119	0.00146	0.565	0.01834	1	0.052859	1	0.00359	1
amp_4q12	30 (6%)	483	1	1	0.04216	1	2e-04	0.0858	0.00018	0.0776	0.0087199	1	0.27783	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00339	1	0.00013	0.0569	0.94387	1	0.00379	1
amp_7p11.2	128 (25%)	385	0.76348	1	0.40386	1	9.9999e-06	0.00604	9.9999e-06	0.00604	5e-05	0.0226	0.01254	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00042	0.176	9.9999e-06	0.00604	4e-05	0.0183	9.9999e-06	0.00604
amp_7q31.2	174 (34%)	339	1	1	0.81225	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.0041	1	0.18779	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.01116	1	9.9999e-06	0.00604	0.0087899	1	9.9999e-06	0.00604
amp_7q32.3	182 (35%)	331	0.6974	1	1	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.0067499	1	0.1662	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.054639	1	9.9999e-06	0.00604	0.02219	1	9.9999e-06	0.00604
amp_8q24.13	100 (19%)	413	0.36856	1	0.23927	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.0415	1	0.48535	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.02887	1	0.00095999	0.382	0.11249	1	2e-05	0.00944
amp_9q34.3	46 (9%)	467	0.51054	1	0.88358	1	0.094819	1	0.04912	1	0.20891	1	0.76124	1	0.080209	1	0.01407	1	0.20077	1	0.085749	1	0.28251	1	0.28543	1
amp_10p15.3	71 (14%)	442	0.52636	1	0.083319	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.02927	1	0.13477	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00105	0.416	0.077299	1	0.33305	1	0.00011	0.0485
amp_11q24.1	87 (17%)	426	0.071449	1	0.11967	1	0.61349	1	0.0112	1	0.054189	1	0.0294	1	0.070309	1	0.065349	1	0.75978	1	0.11528	1	0.8526	1	0.04398	1
amp_12p13.32	72 (14%)	441	0.86503	1	0.097019	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.11363	1	0.19075	1	0.00018	0.0776	4e-05	0.0183	0.01013	1	0.0064699	1	0.02428	1	0.085289	1
amp_12q14.1	37 (7%)	476	NA	NA	NA	NA	9.9999e-06	0.00604	2e-05	0.00944	0.01566	1	0.72885	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.0028	1	9.9999e-06	0.00604	0.04267	1	9.9999e-06	0.00604
amp_13q34	22 (4%)	491	NA	NA	NA	NA	0.00151	0.583	0.00137	0.534	0.18687	1	0.71841	1	0.04344	1	0.0095299	1	0.29608	1	0.68844	1	0.96151	1	0.050359	1
amp_15q26.3	19 (4%)	494	1	1	0.04319	1	4e-05	0.0183	0.00095999	0.382	0.21981	1	0.60553	1	0.04405	1	0.0085799	1	0.49694	1	0.28372	1	0.59212	1	0.18991	1
amp_17q25.1	44 (9%)	469	NA	NA	NA	NA	0.054339	1	0.35955	1	0.33052	1	0.44004	1	0.059529	1	0.069479	1	0.15009	1	0.56413	1	0.18662	1	0.56289	1
amp_19p13.3	129 (25%)	384	0.074999	1	0.1487	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.8837	1	0.579	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00012	0.0528	0.15678	1	0.04568	1	0.00082999	0.333
amp_19p13.2	122 (24%)	391	0.074919	1	0.1498	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.27611	1	0.20075	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00023	0.0982	0.14174	1	0.04191	1	0.00051999	0.216
amp_xp11.22	48 (9%)	465	0.64914	1	1	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.31851	1	0.73022	1	0.00152	0.585	7.9999e-05	0.0357	0.056099	1	0.59833	1	0.32851	1	0.10834	1
amp_xp11.22	63 (12%)	450	0.64936	1	1	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.02653	1	0.3901	1	2e-05	0.00944	9.9999e-06	0.00604	0.00033	0.139	0.35184	1	0.074099	1	0.0094599	1
del_1p36.32	206 (40%)	307	0.00045	0.188	0.00015	0.0652	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00066999	0.273	0.8461	1	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604
del_1p32.3	196 (38%)	317	0.02883	1	0.00017	0.0734	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00056999	0.234	0.61413	1	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604
del_1q43	31 (6%)	482	NA	NA	NA	NA	0.31529	1	0.0097399	1	0.10098	1	0.53473	1	0.02805	1	0.01318	1	0.22817	1	0.75926	1	0.79297	1	0.30158	1
del_2q37.3	77 (15%)	436	0.36683	1	0.01281	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00472	1	0.0201	1	0.00024	0.102	6.9999e-05	0.0314	0.0148	1	0.14122	1	0.10252	1	0.082459	1
del_3p21.31	49 (10%)	464	1	1	0.0068399	1	0.00015	0.0652	0.00199	0.748	0.00235	0.877	0.26334	1	0.02312	1	0.0060499	1	0.00053999	0.223	0.00232	0.868	0.7293	1	0.050059	1
del_3q13.31	39 (8%)	474	0.17502	1	0.88099	1	0.00012	0.0528	0.00381	1	0.34139	1	0.17436	1	0.16215	1	0.03167	1	0.1559	1	0.00056999	0.234	0.57363	1	0.11278	1
del_3q29	47 (9%)	466	0.17509	1	0.88159	1	9.9999e-06	0.00604	0.00042	0.176	0.40466	1	0.92064	1	0.00452	1	0.00112	0.442	0.12806	1	0.0047	1	0.69169	1	0.17099	1
del_4q34.3	138 (27%)	375	1	1	0.35655	1	0.01285	1	9.9999e-06	0.00604	0.16526	1	0.22482	1	0.054249	1	0.072549	1	0.03046	1	0.03758	1	0.00121	0.474	0.0058699	1
del_5p15.33	50 (10%)	463	1	1	0.067919	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.86477	1	0.58074	1	0.00472	1	0.00067999	0.276	0.00192	0.724	0.20458	1	0.94674	1	0.44087	1
del_5q34	64 (12%)	449	0.44416	1	0.23543	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.16255	1	1	1	7.9999e-05	0.0357	9.9999e-06	0.00604	2e-05	0.00944	0.14603	1	0.61273	1	0.66602	1
del_6p25.3	50 (10%)	463	NA	NA	NA	NA	0.00016	0.0693	0.04244	1	0.23087	1	0.92642	1	0.068419	1	0.1128	1	0.41332	1	0.25263	1	0.14407	1	0.086409	1
del_6q22.31	78 (15%)	435	0.61715	1	0.57935	1	5.9999e-05	0.0271	2e-05	0.00944	0.11481	1	0.50896	1	0.0051399	1	0.00052999	0.219	0.00074999	0.301	0.12102	1	0.0063999	1	2e-05	0.00944
del_6q24.3	82 (16%)	431	0.17135	1	0.27956	1	3e-04	0.127	9.9999e-06	0.00604	0.098869	1	0.61977	1	0.00145	0.563	8.9999e-05	0.04	0.00013	0.0569	0.1639	1	0.02133	1	4e-05	0.0183
del_7p22.3	23 (4%)	490	NA	NA	NA	NA	0.02539	1	0.12262	1	0.256	1	0.35491	1	0.57633	1	0.58153	1	0.50295	1	0.095349	1	0.73289	1	0.35438	1
del_8q24.3	29 (6%)	484	NA	NA	NA	NA	9.9999e-06	0.00604	9.9999e-06	0.00604	0.92741	1	0.464	1	0.00165	0.63	0.00058999	0.241	0.00411	1	0.00329	1	0.16622	1	0.0314	1
del_9p23	150 (29%)	363	0.44581	1	0.65746	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.03955	1	0.0025	0.927	0.01325	1	0.02096	1	0.91737	1	0.11441	1	0.41048	1	0.00278	1
del_9p21.3	176 (34%)	337	0.33484	1	0.062459	1	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	2e-05	0.00944	9.9999e-06	0.00604	9.9999e-06	0.00604	0.25068	1	9.9999e-06	0.00604	0.00083999	0.336	9.9999e-06	0.00604
del_10q26.3	151 (29%)	362	0.083779	1	0.70531	1	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00026	0.11	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604
del_11p15.5	104 (20%)	409	0.64411	1	0.00050999	0.212	9.9999e-06	0.00604	9.9999e-06	0.00604	0.14566	1	0.63178	1	9.9999e-06	0.00604	9.9999e-06	0.00604	2e-05	0.00944	0.00474	1	0.99001	1	0.88755	1
del_11p15.1	72 (14%)	441	1	1	0.03095	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.01258	1	0.79213	1	9.9999e-06	0.00604	9.9999e-06	0.00604	5e-05	0.0226	3e-05	0.0139	0.87429	1	0.03356	1
del_12p13.1	38 (7%)	475	NA	NA	NA	NA	0.00069999	0.283	0.00184	0.697	0.1521	1	1	1	0.0076199	1	0.0133	1	0.057539	1	0.0432	1	0.95539	1	0.25185	1
del_12q12	72 (14%)	441	1	1	0.15124	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.91162	1	0.28362	1	0.0064499	1	0.00338	1	0.01332	1	0.49724	1	0.90944	1	0.96298	1
del_13q14.2	142 (28%)	371	0.17943	1	6.9999e-05	0.0314	9.9999e-06	0.00604	5.9999e-05	0.0271	0.03427	1	0.60505	1	2e-04	0.0858	2e-05	0.00944	0.01835	1	0.0057199	1	0.47503	1	0.41267	1
del_13q14.2	144 (28%)	369	0.18147	1	5.9999e-05	0.0271	9.9999e-06	0.00604	3e-05	0.0139	0.0327	1	0.70888	1	0.00014	0.061	3e-05	0.0139	0.01619	1	0.00337	1	0.43278	1	0.3607	1
del_13q34	110 (21%)	403	0.50645	1	0.15074	1	9.9999e-05	0.0442	0.01191	1	0.085469	1	0.76047	1	0.0098399	1	0.00189	0.714	0.02583	1	0.00313	1	0.3111	1	0.17671	1
del_14q24.3	121 (24%)	392	0.30403	1	0.097689	1	0.00482	1	0.01221	1	0.00159	0.609	0.03593	1	0.00053999	0.223	8.9999e-05	0.04	0.00031	0.131	0.0046	1	0.00169	0.642	0.00112	0.442
del_18q23	78 (15%)	435	0.32215	1	0.32941	1	0.45889	1	0.00332	1	0.46177	1	0.075119	1	0.39906	1	0.079179	1	0.34647	1	0.61822	1	0.52984	1	0.89912	1
del_19q13.41	267 (52%)	246	0.03378	1	0.01004	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00091999	0.367	0.18516	1	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604
del_19q13.42	278 (54%)	235	0.03621	1	0.02131	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00229	0.859	0.57482	1	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604	9.9999e-06	0.00604
del_22q13.31	77 (15%)	436	0.25194	1	0.04216	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.00029	0.123	0.01191	1	9.9999e-06	0.00604	9.9999e-06	0.00604	0.03527	1	3e-05	0.0139	0.00165	0.63	4e-05	0.0183
del_xq21.1	78 (15%)	435	0.84013	1	0.26742	1	0.19256	1	0.052399	1	0.052459	1	0.1538	1	0.0075599	1	0.00067999	0.276	0.00119	0.468	0.3558	1	0.11788	1	0.15639	1
