[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oTLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/11590619/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/11544938/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=513, common to both=513
[1]  52 513
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                         471 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                         471 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           43                           470 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           43                           470 
[1] "AMP PEAK  3(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           24                           489 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           24                           489 
[1] "AMP PEAK  4(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                            21                            492 
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                            21                            492 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         30                         483 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         30                         483 
[1] "AMP PEAK  6(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          128                           385 
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          128                           385 
[1] "AMP PEAK  7(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          174                           339 
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          174                           339 
[1] "AMP PEAK  8(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          182                           331 
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          182                           331 
[1] "AMP PEAK  9(8Q24.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                           100                            413 
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                           100                            413 
[1] "AMP PEAK 10(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE 
                           46                           467 
  AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE 
                           46                           467 
[1] "AMP PEAK 11(10P15.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE 
                            71                            442 
  AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE 
                            71                            442 
[1] "AMP PEAK 12(11Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE 
                            87                            426 
  AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE 
                            87                            426 
[1] "AMP PEAK 13(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                             72                             441 
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                             72                             441 
[1] "AMP PEAK 14(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            37                            476 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            37                            476 
[1] "AMP PEAK 15(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          22                          491 
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          22                          491 
[1] "AMP PEAK 16(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            19                            494 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            19                            494 
[1] "AMP PEAK 17(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                            44                            469 
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                            44                            469 
[1] "AMP PEAK 18(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE 
                           129                            384 
  AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE 
                           129                            384 
[1] "AMP PEAK 19(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE 
                           122                            391 
  AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE 
                           122                            391 
[1] "AMP PEAK 20(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE 
                            48                            465 
  AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE 
                            48                            465 
[1] "AMP PEAK 21(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE 
                            63                            450 
  AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE 
                            63                            450 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           206                            307 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           206                            307 
[1] "DEL PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          196                           317 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          196                           317 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         31                         482 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         31                         482 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           77                           436 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           77                           436 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            49                            464 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            49                            464 
[1] "DEL PEAK  6(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE 
                            39                            474 
  DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE 
                            39                            474 
[1] "DEL PEAK  7(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                         47                         466 
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                         47                         466 
[1] "DEL PEAK  8(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                          138                           375 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                          138                           375 
[1] "DEL PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE 
                            50                            463 
  DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE 
                            50                            463 
[1] "DEL PEAK 10(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE 
                         64                         449 
  DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE 
                         64                         449 
[1] "DEL PEAK 11(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           50                           463 
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           50                           463 
[1] "DEL PEAK 12(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE 
                            78                            435 
  DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE 
                            78                            435 
[1] "DEL PEAK 13(6Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE 
                           82                           431 
  DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE 
                           82                           431 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           23                           490 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           23                           490 
[1] "DEL PEAK 15(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                           29                           484 
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                           29                           484 
[1] "DEL PEAK 16(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        150                         363 
  DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE 
                        150                         363 
[1] "DEL PEAK 17(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          176                           337 
  DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE 
                          176                           337 
[1] "DEL PEAK 18(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           151                            362 
  DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE 
                           151                            362 
[1] "DEL PEAK 19(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                           104                            409 
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                           104                            409 
[1] "DEL PEAK 20(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE 
                            72                            441 
  DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE 
                            72                            441 
[1] "DEL PEAK 21(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            38                            475 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            38                            475 
[1] "DEL PEAK 22(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          72                          441 
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          72                          441 
[1] "DEL PEAK 23(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           142                            371 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           142                            371 
[1] "DEL PEAK 24(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                           144                            369 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                           144                            369 
[1] "DEL PEAK 25(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         110                          403 
  DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE 
                         110                          403 
[1] "DEL PEAK 26(14Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE 
                           121                            392 
  DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE 
                           121                            392 
[1] "DEL PEAK 27(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE 
                          78                          435 
  DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE 
                          78                          435 
[1] "DEL PEAK 28(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE 
                            267                             246 
  DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE 
                            267                             246 
[1] "DEL PEAK 29(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE 
                            278                             235 
  DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE 
                            278                             235 
[1] "DEL PEAK 30(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE 
                             77                             436 
  DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE 
                             77                             436 
[1] "DEL PEAK 31(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE 
                           78                           435 
  DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE 
                           78                           435 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 513 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 513 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        1      1      0
  AMP PEAK  1(1Q22) WILD-TYPE      8      9      8
D1V1, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  1(1Q22) MUTATED"
clus
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  1(1Q22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        1      1      0      0
  AMP PEAK  1(1Q22) WILD-TYPE      6      6      7      6
D1V2, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  1(1Q22) MUTATED"
clus
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  1(1Q22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       15     19      8
  AMP PEAK  1(1Q22) WILD-TYPE    157    101    213
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        15                         157
  CLUS_2                        19                         101
  CLUS_3                         8                         213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       19     14      8      1
  AMP PEAK  1(1Q22) WILD-TYPE    206     67    159     39
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        19                         206
  CLUS_2                        14                          67
  CLUS_3                         8                         159
  CLUS_4                         1                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        4     10      4      6
  AMP PEAK  1(1Q22) WILD-TYPE     48     52     64     68
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         4                          48
  CLUS_2                        10                          52
  CLUS_3                         4                          64
  CLUS_4                         6                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        5     13      6
  AMP PEAK  1(1Q22) WILD-TYPE     62    118     52
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                          62
  CLUS_2                        13                         118
  CLUS_3                         6                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        8     20      3      9      2
  AMP PEAK  1(1Q22) WILD-TYPE    127     92    105    119     26
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                         127
  CLUS_2                        20                          92
  CLUS_3                         3                         105
  CLUS_4                         9                         119
  CLUS_5                         2                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       10     18      7      7
  AMP PEAK  1(1Q22) WILD-TYPE    125     95    118    131
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        10                         125
  CLUS_2                        18                          95
  CLUS_3                         7                         118
  CLUS_4                         7                         131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       15      9     13      5
  AMP PEAK  1(1Q22) WILD-TYPE    122     98    170     77
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        15                         122
  CLUS_2                         9                          98
  CLUS_3                        13                         170
  CLUS_4                         5                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       14     14     14
  AMP PEAK  1(1Q22) WILD-TYPE    208    170     89
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        14                         208
  CLUS_2                        14                         170
  CLUS_3                        14                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       19      8     15
  AMP PEAK  1(1Q22) WILD-TYPE    166    153    144
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        19                         166
  CLUS_2                         8                         153
  CLUS_3                        15                         144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        9      8     14     11
  AMP PEAK  1(1Q22) WILD-TYPE     82    129    174     78
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         9                          82
  CLUS_2                         8                         129
  CLUS_3                        14                         174
  CLUS_4                        11                          78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        0      0      2
  AMP PEAK  2(1Q32.1) WILD-TYPE      9     10      6
D2V1, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1Q32.1) MUTATED"
clus
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  2(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        1      1      0      0
  AMP PEAK  2(1Q32.1) WILD-TYPE      6      6      7      6
D2V2, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1Q32.1) MUTATED"
clus
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  2(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       10     28      5
  AMP PEAK  2(1Q32.1) WILD-TYPE    162     92    216
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          10                           162
  CLUS_2                          28                            92
  CLUS_3                           5                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       12     24      6      1
  AMP PEAK  2(1Q32.1) WILD-TYPE    213     57    161     39
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          12                           213
  CLUS_2                          24                            57
  CLUS_3                           6                           161
  CLUS_4                           1                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        4      8      2      8
  AMP PEAK  2(1Q32.1) WILD-TYPE     48     54     66     66
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                           8                            54
  CLUS_3                           2                            66
  CLUS_4                           8                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        3     12      7
  AMP PEAK  2(1Q32.1) WILD-TYPE     64    119     51
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            64
  CLUS_2                          12                           119
  CLUS_3                           7                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        2     26      1     12      2
  AMP PEAK  2(1Q32.1) WILD-TYPE    133     86    107    116     26
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           2                           133
  CLUS_2                          26                            86
  CLUS_3                           1                           107
  CLUS_4                          12                           116
  CLUS_5                           2                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        3     24      5     11
  AMP PEAK  2(1Q32.1) WILD-TYPE    132     89    120    127
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                          24                            89
  CLUS_3                           5                           120
  CLUS_4                          11                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       17      6     15      5
  AMP PEAK  2(1Q32.1) WILD-TYPE    120    101    168     77
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          17                           120
  CLUS_2                           6                           101
  CLUS_3                          15                           168
  CLUS_4                           5                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        8     13     22
  AMP PEAK  2(1Q32.1) WILD-TYPE    214    171     81
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           8                           214
  CLUS_2                          13                           171
  CLUS_3                          22                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       23      4     16
  AMP PEAK  2(1Q32.1) WILD-TYPE    162    157    143
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          23                           162
  CLUS_2                           4                           157
  CLUS_3                          16                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        5      3     14     21
  AMP PEAK  2(1Q32.1) WILD-TYPE     86    134    174     68
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           5                            86
  CLUS_2                           3                           134
  CLUS_3                          14                           174
  CLUS_4                          21                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        0      2      1
  AMP PEAK  3(2P24.3) WILD-TYPE      9      8      7
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                             8
  CLUS_3                           1                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        0      2      1      0
  AMP PEAK  3(2P24.3) WILD-TYPE      7      5      6      6
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        6     13      5
  AMP PEAK  3(2P24.3) WILD-TYPE    166    107    216
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           6                           166
  CLUS_2                          13                           107
  CLUS_3                           5                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED       10      9      4      1
  AMP PEAK  3(2P24.3) WILD-TYPE    215     72    163     39
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          10                           215
  CLUS_2                           9                            72
  CLUS_3                           4                           163
  CLUS_4                           1                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        2      4      1      2
  AMP PEAK  3(2P24.3) WILD-TYPE     50     58     67     72
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           4                            58
  CLUS_3                           1                            67
  CLUS_4                           2                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        2      5      2
  AMP PEAK  3(2P24.3) WILD-TYPE     65    126     56
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                           5                           126
  CLUS_3                           2                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED        4     12      2      6      0
  AMP PEAK  3(2P24.3) WILD-TYPE    131    100    106    122     28
D3V7, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                           131
  CLUS_2                          12                           100
  CLUS_3                           2                           106
  CLUS_4                           6                           122
  CLUS_5                           0                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        3     12      3      6
  AMP PEAK  3(2P24.3) WILD-TYPE    132    101    122    132
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                          12                           101
  CLUS_3                           3                           122
  CLUS_4                           6                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        7      7      7      3
  AMP PEAK  3(2P24.3) WILD-TYPE    130    100    176     79
D3V9, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           7                           130
  CLUS_2                           7                           100
  CLUS_3                           7                           176
  CLUS_4                           3                            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        9      5     10
  AMP PEAK  3(2P24.3) WILD-TYPE    213    179     93
D3V10, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                           213
  CLUS_2                           5                           179
  CLUS_3                          10                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        9     10      5
  AMP PEAK  3(2P24.3) WILD-TYPE    176    151    154
D3V11, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                           176
  CLUS_2                          10                           151
  CLUS_3                           5                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        3      8      5      8
  AMP PEAK  3(2P24.3) WILD-TYPE     88    129    183     81
D3V12, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           3                            88
  CLUS_2                           8                           129
  CLUS_3                           5                           183
  CLUS_4                           8                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        1      1      1
  AMP PEAK  4(3Q26.33) WILD-TYPE      8      9      7
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        2      1      0      0
  AMP PEAK  4(3Q26.33) WILD-TYPE      5      6      7      6
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        1     17      3
  AMP PEAK  4(3Q26.33) WILD-TYPE    171    103    218
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            1                            171
  CLUS_2                           17                            103
  CLUS_3                            3                            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        9     10      2      0
  AMP PEAK  4(3Q26.33) WILD-TYPE    216     71    165     40
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            9                            216
  CLUS_2                           10                             71
  CLUS_3                            2                            165
  CLUS_4                            0                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        2      6      1      2
  AMP PEAK  4(3Q26.33) WILD-TYPE     50     56     67     72
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                            6                             56
  CLUS_3                            1                             67
  CLUS_4                            2                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        2      6      3
  AMP PEAK  4(3Q26.33) WILD-TYPE     65    125     55
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                             65
  CLUS_2                            6                            125
  CLUS_3                            3                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.33) MUTATED        5     13      2      1      0
  AMP PEAK  4(3Q26.33) WILD-TYPE    130     99    106    127     28
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            5                            130
  CLUS_2                           13                             99
  CLUS_3                            2                            106
  CLUS_4                            1                            127
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        4     13      1      3
  AMP PEAK  4(3Q26.33) WILD-TYPE    131    100    124    135
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            4                            131
  CLUS_2                           13                            100
  CLUS_3                            1                            124
  CLUS_4                            3                            135
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       11      7      1      2
  AMP PEAK  4(3Q26.33) WILD-TYPE    126    100    182     80
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           11                            126
  CLUS_2                            7                            100
  CLUS_3                            1                            182
  CLUS_4                            2                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        9      3      9
  AMP PEAK  4(3Q26.33) WILD-TYPE    213    181     94
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            9                            213
  CLUS_2                            3                            181
  CLUS_3                            9                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED       13      5      3
  AMP PEAK  4(3Q26.33) WILD-TYPE    172    156    156
D4V11, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           13                            172
  CLUS_2                            5                            156
  CLUS_3                            3                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        6      2      4      9
  AMP PEAK  4(3Q26.33) WILD-TYPE     85    135    184     80
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            6                             85
  CLUS_2                            2                            135
  CLUS_3                            4                            184
  CLUS_4                            9                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        1      1      1
  AMP PEAK  5(4Q12) WILD-TYPE      8      9      7
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         1                           9
  CLUS_3                         1                           7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        0      3      0      0
  AMP PEAK  5(4Q12) WILD-TYPE      7      4      7      6
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         0                           7
  CLUS_2                         3                           4
  CLUS_3                         0                           7
  CLUS_4                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       17     10      3
  AMP PEAK  5(4Q12) WILD-TYPE    155    110    218
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        17                         155
  CLUS_2                        10                         110
  CLUS_3                         3                         218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       19      9      1      1
  AMP PEAK  5(4Q12) WILD-TYPE    206     72    166     39
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        19                         206
  CLUS_2                         9                          72
  CLUS_3                         1                         166
  CLUS_4                         1                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        2      8      0      5
  AMP PEAK  5(4Q12) WILD-TYPE     50     54     68     69
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         0                          68
  CLUS_4                         5                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        3      6      6
  AMP PEAK  5(4Q12) WILD-TYPE     64    125     52
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          64
  CLUS_2                         6                         125
  CLUS_3                         6                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        5     18      0      6      1
  AMP PEAK  5(4Q12) WILD-TYPE    130     94    108    122     27
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                        18                          94
  CLUS_3                         0                         108
  CLUS_4                         6                         122
  CLUS_5                         1                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        5     19      0      6
  AMP PEAK  5(4Q12) WILD-TYPE    130     94    125    132
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                        19                          94
  CLUS_3                         0                         125
  CLUS_4                         6                         132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        6     15      7      2
  AMP PEAK  5(4Q12) WILD-TYPE    131     92    176     80
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         6                         131
  CLUS_2                        15                          92
  CLUS_3                         7                         176
  CLUS_4                         2                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        7      7     16
  AMP PEAK  5(4Q12) WILD-TYPE    215    177     87
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                         215
  CLUS_2                         7                         177
  CLUS_3                        16                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       12      9      9
  AMP PEAK  5(4Q12) WILD-TYPE    173    152    150
D5V11, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        12                         173
  CLUS_2                         9                         152
  CLUS_3                         9                         150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        3      8      6     13
  AMP PEAK  5(4Q12) WILD-TYPE     88    129    182     76
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          88
  CLUS_2                         8                         129
  CLUS_3                         6                         182
  CLUS_4                        13                          76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        3      2      3
  AMP PEAK  6(7P11.2) WILD-TYPE      6      8      5
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                             8
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED        2      4      1      1
  AMP PEAK  6(7P11.2) WILD-TYPE      5      3      6      5
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           4                             3
  CLUS_3                           1                             6
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       21     98      9
  AMP PEAK  6(7P11.2) WILD-TYPE    151     22    212
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          21                           151
  CLUS_2                          98                            22
  CLUS_3                           9                           212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       40     64     15      9
  AMP PEAK  6(7P11.2) WILD-TYPE    185     17    152     31
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          40                           185
  CLUS_2                          64                            17
  CLUS_3                          15                           152
  CLUS_4                           9                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       13     31     12     12
  AMP PEAK  6(7P11.2) WILD-TYPE     39     31     56     62
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                          31                            31
  CLUS_3                          12                            56
  CLUS_4                          12                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       14     45      9
  AMP PEAK  6(7P11.2) WILD-TYPE     53     86     49
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          14                            53
  CLUS_2                          45                            86
  CLUS_3                           9                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P11.2) MUTATED       22     66      9     24      5
  AMP PEAK  6(7P11.2) WILD-TYPE    113     46     99    104     23
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          22                           113
  CLUS_2                          66                            46
  CLUS_3                           9                            99
  CLUS_4                          24                           104
  CLUS_5                           5                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       19     65     10     32
  AMP PEAK  6(7P11.2) WILD-TYPE    116     48    115    106
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          19                           116
  CLUS_2                          65                            48
  CLUS_3                          10                           115
  CLUS_4                          32                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       44     37     32     13
  AMP PEAK  6(7P11.2) WILD-TYPE     93     70    151     69
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          44                            93
  CLUS_2                          37                            70
  CLUS_3                          32                           151
  CLUS_4                          13                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       37     28     61
  AMP PEAK  6(7P11.2) WILD-TYPE    185    156     42
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          37                           185
  CLUS_2                          28                           156
  CLUS_3                          61                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       66     26     33
  AMP PEAK  6(7P11.2) WILD-TYPE    119    135    126
D6V11, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          66                           119
  CLUS_2                          26                           135
  CLUS_3                          33                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       13     22     32     58
  AMP PEAK  6(7P11.2) WILD-TYPE     78    115    156     31
D6V12, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          13                            78
  CLUS_2                          22                           115
  CLUS_3                          32                           156
  CLUS_4                          58                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        3      3      3
  AMP PEAK  7(7Q31.2) WILD-TYPE      6      7      5
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED        3      3      2      1
  AMP PEAK  7(7Q31.2) WILD-TYPE      4      4      5      5
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           3                             4
  CLUS_3                           2                             5
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       46    105     23
  AMP PEAK  7(7Q31.2) WILD-TYPE    126     15    198
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          46                           126
  CLUS_2                         105                            15
  CLUS_3                          23                           198
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       77     59     29      9
  AMP PEAK  7(7Q31.2) WILD-TYPE    148     22    138     31
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          77                           148
  CLUS_2                          59                            22
  CLUS_3                          29                           138
  CLUS_4                           9                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       19     33     17     21
  AMP PEAK  7(7Q31.2) WILD-TYPE     33     29     51     53
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          19                            33
  CLUS_2                          33                            29
  CLUS_3                          17                            51
  CLUS_4                          21                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       23     52     15
  AMP PEAK  7(7Q31.2) WILD-TYPE     44     79     43
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          23                            44
  CLUS_2                          52                            79
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q31.2) MUTATED       48     63     15     38      8
  AMP PEAK  7(7Q31.2) WILD-TYPE     87     49     93     90     20
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          48                            87
  CLUS_2                          63                            49
  CLUS_3                          15                            93
  CLUS_4                          38                            90
  CLUS_5                           8                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       44     61     20     47
  AMP PEAK  7(7Q31.2) WILD-TYPE     91     52    105     91
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          44                            91
  CLUS_2                          61                            52
  CLUS_3                          20                           105
  CLUS_4                          47                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       56     44     52     20
  AMP PEAK  7(7Q31.2) WILD-TYPE     81     63    131     62
D7V9, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          56                            81
  CLUS_2                          44                            63
  CLUS_3                          52                           131
  CLUS_4                          20                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       65     48     59
  AMP PEAK  7(7Q31.2) WILD-TYPE    157    136     44
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          65                           157
  CLUS_2                          48                           136
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       76     41     54
  AMP PEAK  7(7Q31.2) WILD-TYPE    109    120    105
D7V11, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          76                           109
  CLUS_2                          41                           120
  CLUS_3                          54                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       24     35     57     55
  AMP PEAK  7(7Q31.2) WILD-TYPE     67    102    131     34
D7V12, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          24                            67
  CLUS_2                          35                           102
  CLUS_3                          57                           131
  CLUS_4                          55                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED        3      3      4
  AMP PEAK  8(7Q32.3) WILD-TYPE      6      7      4
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           4                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED        3      3      2      2
  AMP PEAK  8(7Q32.3) WILD-TYPE      4      4      5      4
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           3                             4
  CLUS_3                           2                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       49    108     25
  AMP PEAK  8(7Q32.3) WILD-TYPE    123     12    196
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          49                           123
  CLUS_2                         108                            12
  CLUS_3                          25                           196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       82     60     30     10
  AMP PEAK  8(7Q32.3) WILD-TYPE    143     21    137     30
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          82                           143
  CLUS_2                          60                            21
  CLUS_3                          30                           137
  CLUS_4                          10                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       20     34     19     22
  AMP PEAK  8(7Q32.3) WILD-TYPE     32     28     49     52
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          20                            32
  CLUS_2                          34                            28
  CLUS_3                          19                            49
  CLUS_4                          22                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       24     55     16
  AMP PEAK  8(7Q32.3) WILD-TYPE     43     76     42
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          55                            76
  CLUS_3                          16                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q32.3) MUTATED       52     63     16     41      8
  AMP PEAK  8(7Q32.3) WILD-TYPE     83     49     92     87     20
D8V7, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          52                            83
  CLUS_2                          63                            49
  CLUS_3                          16                            92
  CLUS_4                          41                            87
  CLUS_5                           8                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       47     61     21     51
  AMP PEAK  8(7Q32.3) WILD-TYPE     88     52    104     87
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          47                            88
  CLUS_2                          61                            52
  CLUS_3                          21                           104
  CLUS_4                          51                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       57     44     56     23
  AMP PEAK  8(7Q32.3) WILD-TYPE     80     63    127     59
D8V9, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          57                            80
  CLUS_2                          44                            63
  CLUS_3                          56                           127
  CLUS_4                          23                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       68     52     60
  AMP PEAK  8(7Q32.3) WILD-TYPE    154    132     43
D8V10, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          68                           154
  CLUS_2                          52                           132
  CLUS_3                          60                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       78     45     56
  AMP PEAK  8(7Q32.3) WILD-TYPE    107    116    103
D8V11, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          78                           107
  CLUS_2                          45                           116
  CLUS_3                          56                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       28     37     59     55
  AMP PEAK  8(7Q32.3) WILD-TYPE     63    100    129     34
D8V12, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          28                            63
  CLUS_2                          37                           100
  CLUS_3                          59                           129
  CLUS_4                          55                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q24.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED        2      1      3
  AMP PEAK  9(8Q24.13) WILD-TYPE      7      9      5
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            3                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED        1      3      0      2
  AMP PEAK  9(8Q24.13) WILD-TYPE      6      4      7      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            3                              4
  CLUS_3                            0                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       66     19     15
  AMP PEAK  9(8Q24.13) WILD-TYPE    106    101    206
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           66                            106
  CLUS_2                           19                            101
  CLUS_3                           15                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       82      4     10      4
  AMP PEAK  9(8Q24.13) WILD-TYPE    143     77    157     36
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           82                            143
  CLUS_2                            4                             77
  CLUS_3                           10                            157
  CLUS_4                            4                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       14     13     19      8
  AMP PEAK  9(8Q24.13) WILD-TYPE     38     49     49     66
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                           13                             49
  CLUS_3                           19                             49
  CLUS_4                            8                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       16     29      9
  AMP PEAK  9(8Q24.13) WILD-TYPE     51    102     49
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           29                            102
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.13) MUTATED       51     12      5     25      6
  AMP PEAK  9(8Q24.13) WILD-TYPE     84    100    103    103     22
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           51                             84
  CLUS_2                           12                            100
  CLUS_3                            5                            103
  CLUS_4                           25                            103
  CLUS_5                            6                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       52     12      7     28
  AMP PEAK  9(8Q24.13) WILD-TYPE     83    101    118    110
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           52                             83
  CLUS_2                           12                            101
  CLUS_3                            7                            118
  CLUS_4                           28                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       33     22     36      7
  AMP PEAK  9(8Q24.13) WILD-TYPE    104     85    147     75
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           33                            104
  CLUS_2                           22                             85
  CLUS_3                           36                            147
  CLUS_4                            7                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       58     30     10
  AMP PEAK  9(8Q24.13) WILD-TYPE    164    154     93
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           58                            164
  CLUS_2                           30                            154
  CLUS_3                           10                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       37     38     23
  AMP PEAK  9(8Q24.13) WILD-TYPE    148    123    136
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           37                            148
  CLUS_2                           38                            123
  CLUS_3                           23                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       34     21     35      8
  AMP PEAK  9(8Q24.13) WILD-TYPE     57    116    153     81
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           34                             57
  CLUS_2                           21                            116
  CLUS_3                           35                            153
  CLUS_4                            8                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED        2      2      0
  AMP PEAK 10(9Q34.3) WILD-TYPE      7      8      8
D10V1, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           2                             8
  CLUS_3                           0                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        1      2      1      0
  AMP PEAK 10(9Q34.3) WILD-TYPE      6      5      6      6
D10V2, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED       19     14     13
  AMP PEAK 10(9Q34.3) WILD-TYPE    153    106    208
D10V3, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          19                           153
  CLUS_2                          14                           106
  CLUS_3                          13                           208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       28      8      8      2
  AMP PEAK 10(9Q34.3) WILD-TYPE    197     73    159     38
D10V4, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          28                           197
  CLUS_2                           8                            73
  CLUS_3                           8                           159
  CLUS_4                           2                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        4     10      7      4
  AMP PEAK 10(9Q34.3) WILD-TYPE     48     52     61     70
D10V5, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                          10                            52
  CLUS_3                           7                            61
  CLUS_4                           4                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED        7     14      4
  AMP PEAK 10(9Q34.3) WILD-TYPE     60    117     54
D10V6, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                          14                           117
  CLUS_3                           4                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(9Q34.3) MUTATED       11     18      8      8      1
  AMP PEAK 10(9Q34.3) WILD-TYPE    124     94    100    120     27
D10V7, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          11                           124
  CLUS_2                          18                            94
  CLUS_3                           8                           100
  CLUS_4                           8                           120
  CLUS_5                           1                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        8     19      7     12
  AMP PEAK 10(9Q34.3) WILD-TYPE    127     94    118    126
D10V8, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           8                           127
  CLUS_2                          19                            94
  CLUS_3                           7                           118
  CLUS_4                          12                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       11     15     12      7
  AMP PEAK 10(9Q34.3) WILD-TYPE    126     92    171     75
D10V9, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          11                           126
  CLUS_2                          15                            92
  CLUS_3                          12                           171
  CLUS_4                           7                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED       16     14     15
  AMP PEAK 10(9Q34.3) WILD-TYPE    206    170     88
D10V10, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          16                           206
  CLUS_2                          14                           170
  CLUS_3                          15                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED       13     19     13
  AMP PEAK 10(9Q34.3) WILD-TYPE    172    142    146
D10V11, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          13                           172
  CLUS_2                          19                           142
  CLUS_3                          13                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        5     15     14     11
  AMP PEAK 10(9Q34.3) WILD-TYPE     86    122    174     78
D10V12, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           5                            86
  CLUS_2                          15                           122
  CLUS_3                          14                           174
  CLUS_4                          11                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED        3      1      2
  AMP PEAK 11(10P15.3) WILD-TYPE      6      9      6
D11V1, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED        1      4      0      1
  AMP PEAK 11(10P15.3) WILD-TYPE      6      3      7      5
D11V2, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       58      9      4
  AMP PEAK 11(10P15.3) WILD-TYPE    114    111    217
D11V3, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           58                            114
  CLUS_2                            9                            111
  CLUS_3                            4                            217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       65      3      0      3
  AMP PEAK 11(10P15.3) WILD-TYPE    160     78    167     37
D11V4, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           65                            160
  CLUS_2                            3                             78
  CLUS_3                            0                            167
  CLUS_4                            3                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       13      9     13      5
  AMP PEAK 11(10P15.3) WILD-TYPE     39     53     55     69
D11V5, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                            9                             53
  CLUS_3                           13                             55
  CLUS_4                            5                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED        9     26      5
  AMP PEAK 11(10P15.3) WILD-TYPE     58    105     53
D11V6, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                           26                            105
  CLUS_3                            5                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(10P15.3) MUTATED       41     13      0     16      1
  AMP PEAK 11(10P15.3) WILD-TYPE     94     99    108    112     27
D11V7, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           41                             94
  CLUS_2                           13                             99
  CLUS_3                            0                            108
  CLUS_4                           16                            112
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       40     13      0     18
  AMP PEAK 11(10P15.3) WILD-TYPE     95    100    125    120
D11V8, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           40                             95
  CLUS_2                           13                            100
  CLUS_3                            0                            125
  CLUS_4                           18                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       20     26     20      4
  AMP PEAK 11(10P15.3) WILD-TYPE    117     81    163     78
D11V9, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           20                            117
  CLUS_2                           26                             81
  CLUS_3                           20                            163
  CLUS_4                            4                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       39     18     13
  AMP PEAK 11(10P15.3) WILD-TYPE    183    166     90
D11V10, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           39                            183
  CLUS_2                           18                            166
  CLUS_3                           13                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       30     23     17
  AMP PEAK 11(10P15.3) WILD-TYPE    155    138    142
D11V11, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           30                            155
  CLUS_2                           23                            138
  CLUS_3                           17                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       27     16     21      6
  AMP PEAK 11(10P15.3) WILD-TYPE     64    121    167     83
D11V12, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           27                             64
  CLUS_2                           16                            121
  CLUS_3                           21                            167
  CLUS_4                            6                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(11Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED        0      4      1
  AMP PEAK 12(11Q24.1) WILD-TYPE      9      6      7
D12V1, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            4                              6
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED        0      2      3      0
  AMP PEAK 12(11Q24.1) WILD-TYPE      7      5      4      6
D12V2, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            2                              5
  CLUS_3                            3                              4
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       33     20     34
  AMP PEAK 12(11Q24.1) WILD-TYPE    139    100    187
D12V3, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                           20                            100
  CLUS_3                           34                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       50      7     27      3
  AMP PEAK 12(11Q24.1) WILD-TYPE    175     74    140     37
D12V4, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           50                            175
  CLUS_2                            7                             74
  CLUS_3                           27                            140
  CLUS_4                            3                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED        5      9     19     11
  AMP PEAK 12(11Q24.1) WILD-TYPE     47     53     49     63
D12V5, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                            9                             53
  CLUS_3                           19                             49
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED        5     29     10
  AMP PEAK 12(11Q24.1) WILD-TYPE     62    102     48
D12V6, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           29                            102
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11Q24.1) MUTATED       28     10     19     23      7
  AMP PEAK 12(11Q24.1) WILD-TYPE    107    102     89    105     21
D12V7, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           28                            107
  CLUS_2                           10                            102
  CLUS_3                           19                             89
  CLUS_4                           23                            105
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       30     11     21     25
  AMP PEAK 12(11Q24.1) WILD-TYPE    105    102    104    113
D12V8, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                           11                            102
  CLUS_3                           21                            104
  CLUS_4                           25                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       26     15     31     15
  AMP PEAK 12(11Q24.1) WILD-TYPE    111     92    152     67
D12V9, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           26                            111
  CLUS_2                           15                             92
  CLUS_3                           31                            152
  CLUS_4                           15                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       46     29     12
  AMP PEAK 12(11Q24.1) WILD-TYPE    176    155     91
D12V10, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           46                            176
  CLUS_2                           29                            155
  CLUS_3                           12                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       31     30     26
  AMP PEAK 12(11Q24.1) WILD-TYPE    154    131    133
D12V11, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           31                            154
  CLUS_2                           30                            131
  CLUS_3                           26                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       20     24     36      7
  AMP PEAK 12(11Q24.1) WILD-TYPE     71    113    152     82
D12V12, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                           24                            113
  CLUS_3                           36                            152
  CLUS_4                            7                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED        3      2      2
  AMP PEAK 13(12P13.32) WILD-TYPE      6      8      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             2                               8
  CLUS_3                             2                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED        2      4      0      1
  AMP PEAK 13(12P13.32) WILD-TYPE      5      3      7      5
D13V2, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             2                               5
  CLUS_2                             4                               3
  CLUS_3                             0                               7
  CLUS_4                             1                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       46     17      9
  AMP PEAK 13(12P13.32) WILD-TYPE    126    103    212
D13V3, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            46                             126
  CLUS_2                            17                             103
  CLUS_3                             9                             212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       55      9      5      3
  AMP PEAK 13(12P13.32) WILD-TYPE    170     72    162     37
D13V4, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            55                             170
  CLUS_2                             9                              72
  CLUS_3                             5                             162
  CLUS_4                             3                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED        9     16      9      8
  AMP PEAK 13(12P13.32) WILD-TYPE     43     46     59     66
D13V5, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             9                              43
  CLUS_2                            16                              46
  CLUS_3                             9                              59
  CLUS_4                             8                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED        9     27      6
  AMP PEAK 13(12P13.32) WILD-TYPE     58    104     52
D13V6, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             9                              58
  CLUS_2                            27                             104
  CLUS_3                             6                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(12P13.32) MUTATED       30     21      4     13      4
  AMP PEAK 13(12P13.32) WILD-TYPE    105     91    104    115     24
D13V7, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            30                             105
  CLUS_2                            21                              91
  CLUS_3                             4                             104
  CLUS_4                            13                             115
  CLUS_5                             4                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       32     20      5     15
  AMP PEAK 13(12P13.32) WILD-TYPE    103     93    120    123
D13V8, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            32                             103
  CLUS_2                            20                              93
  CLUS_3                             5                             120
  CLUS_4                            15                             123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       17     26     18     11
  AMP PEAK 13(12P13.32) WILD-TYPE    120     81    165     71
D13V9, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            17                             120
  CLUS_2                            26                              81
  CLUS_3                            18                             165
  CLUS_4                            11                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       36     15     21
  AMP PEAK 13(12P13.32) WILD-TYPE    186    169     82
D13V10, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            36                             186
  CLUS_2                            15                             169
  CLUS_3                            21                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       31     28     13
  AMP PEAK 13(12P13.32) WILD-TYPE    154    133    146
D13V11, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            31                             154
  CLUS_2                            28                             133
  CLUS_3                            13                             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       18     21     18     15
  AMP PEAK 13(12P13.32) WILD-TYPE     73    116    170     74
D13V12, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            18                              73
  CLUS_2                            21                             116
  CLUS_3                            18                             170
  CLUS_4                            15                              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        0      1      0
  AMP PEAK 14(12Q14.1) WILD-TYPE      9      9      8
D14V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(12Q14.1) MUTATED"
clus
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        0      0      1      0
  AMP PEAK 14(12Q14.1) WILD-TYPE      7      7      6      6
D14V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(12Q14.1) MUTATED"
clus
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       10     22      5
  AMP PEAK 14(12Q14.1) WILD-TYPE    162     98    216
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           10                            162
  CLUS_2                           22                             98
  CLUS_3                            5                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       13     19      4      1
  AMP PEAK 14(12Q14.1) WILD-TYPE    212     62    163     39
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           13                            212
  CLUS_2                           19                             62
  CLUS_3                            4                            163
  CLUS_4                            1                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        2      9      1      3
  AMP PEAK 14(12Q14.1) WILD-TYPE     50     53     67     71
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                            9                             53
  CLUS_3                            1                             67
  CLUS_4                            3                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        4      9      2
  AMP PEAK 14(12Q14.1) WILD-TYPE     63    122     56
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            9                            122
  CLUS_3                            2                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q14.1) MUTATED        3     27      3      3      1
  AMP PEAK 14(12Q14.1) WILD-TYPE    132     85    105    125     27
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                           27                             85
  CLUS_3                            3                            105
  CLUS_4                            3                            125
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        3     26      4      4
  AMP PEAK 14(12Q14.1) WILD-TYPE    132     87    121    134
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                           26                             87
  CLUS_3                            4                            121
  CLUS_4                            4                            134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       13     15      6      3
  AMP PEAK 14(12Q14.1) WILD-TYPE    124     92    177     79
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           13                            124
  CLUS_2                           15                             92
  CLUS_3                            6                            177
  CLUS_4                            3                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       10      5     22
  AMP PEAK 14(12Q14.1) WILD-TYPE    212    179     81
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           10                            212
  CLUS_2                            5                            179
  CLUS_3                           22                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       21      8      8
  AMP PEAK 14(12Q14.1) WILD-TYPE    164    153    151
D14V11, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           21                            164
  CLUS_2                            8                            153
  CLUS_3                            8                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        6      5      7     19
  AMP PEAK 14(12Q14.1) WILD-TYPE     85    132    181     70
D14V12, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            6                             85
  CLUS_2                            5                            132
  CLUS_3                            7                            181
  CLUS_4                           19                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        0      0      1
  AMP PEAK 15(13Q34) WILD-TYPE      9     10      7
D15V1, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 15(13Q34) MUTATED"
clus
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        0      1      0      0
  AMP PEAK 15(13Q34) WILD-TYPE      7      6      7      6
D15V2, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 15(13Q34) MUTATED"
clus
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       12      8      2
  AMP PEAK 15(13Q34) WILD-TYPE    160    112    219
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         12                          160
  CLUS_2                          8                          112
  CLUS_3                          2                          219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       18      3      1      0
  AMP PEAK 15(13Q34) WILD-TYPE    207     78    166     40
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         18                          207
  CLUS_2                          3                           78
  CLUS_3                          1                          166
  CLUS_4                          0                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        2      7      3      2
  AMP PEAK 15(13Q34) WILD-TYPE     50     55     65     72
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          2                           50
  CLUS_2                          7                           55
  CLUS_3                          3                           65
  CLUS_4                          2                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        3      9      2
  AMP PEAK 15(13Q34) WILD-TYPE     64    122     56
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          3                           64
  CLUS_2                          9                          122
  CLUS_3                          2                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q34) MUTATED        7      8      0      6      1
  AMP PEAK 15(13Q34) WILD-TYPE    128    104    108    122     27
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          7                          128
  CLUS_2                          8                          104
  CLUS_3                          0                          108
  CLUS_4                          6                          122
  CLUS_5                          1                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        8      8      0      6
  AMP PEAK 15(13Q34) WILD-TYPE    127    105    125    132
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          8                          127
  CLUS_2                          8                          105
  CLUS_3                          0                          125
  CLUS_4                          6                          132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       10      4      6      2
  AMP PEAK 15(13Q34) WILD-TYPE    127    103    177     80
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         10                          127
  CLUS_2                          4                          103
  CLUS_3                          6                          177
  CLUS_4                          2                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       11      6      5
  AMP PEAK 15(13Q34) WILD-TYPE    211    178     98
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                          211
  CLUS_2                          6                          178
  CLUS_3                          5                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        9      7      6
  AMP PEAK 15(13Q34) WILD-TYPE    176    154    153
D15V11, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          9                          176
  CLUS_2                          7                          154
  CLUS_3                          6                          153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        9      3      6      4
  AMP PEAK 15(13Q34) WILD-TYPE     82    134    182     85
D15V12, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          9                           82
  CLUS_2                          3                          134
  CLUS_3                          6                          182
  CLUS_4                          4                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        1      1      1
  AMP PEAK 16(15Q26.3) WILD-TYPE      8      9      7
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        0      3      0      0
  AMP PEAK 16(15Q26.3) WILD-TYPE      7      4      7      6
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            3                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       12      7      0
  AMP PEAK 16(15Q26.3) WILD-TYPE    160    113    221
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           12                            160
  CLUS_2                            7                            113
  CLUS_3                            0                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       14      5      0      0
  AMP PEAK 16(15Q26.3) WILD-TYPE    211     76    167     40
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           14                            211
  CLUS_2                            5                             76
  CLUS_3                            0                            167
  CLUS_4                            0                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        1      5      2      1
  AMP PEAK 16(15Q26.3) WILD-TYPE     51     57     66     73
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                             51
  CLUS_2                            5                             57
  CLUS_3                            2                             66
  CLUS_4                            1                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        1      6      2
  AMP PEAK 16(15Q26.3) WILD-TYPE     66    125     56
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                             66
  CLUS_2                            6                            125
  CLUS_3                            2                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.3) MUTATED        6      8      0      4      1
  AMP PEAK 16(15Q26.3) WILD-TYPE    129    104    108    124     27
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                            8                            104
  CLUS_3                            0                            108
  CLUS_4                            4                            124
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        7      8      0      4
  AMP PEAK 16(15Q26.3) WILD-TYPE    128    105    125    134
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                            8                            105
  CLUS_3                            0                            125
  CLUS_4                            4                            134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        5      6      7      1
  AMP PEAK 16(15Q26.3) WILD-TYPE    132    101    176     81
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            5                            132
  CLUS_2                            6                            101
  CLUS_3                            7                            176
  CLUS_4                            1                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        9      4      6
  AMP PEAK 16(15Q26.3) WILD-TYPE    213    180     97
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            9                            213
  CLUS_2                            4                            180
  CLUS_3                            6                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        8      4      7
  AMP PEAK 16(15Q26.3) WILD-TYPE    177    157    152
D16V11, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            8                            177
  CLUS_2                            4                            157
  CLUS_3                            7                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        5      4      4      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     86    133    184     83
D16V12, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            5                             86
  CLUS_2                            4                            133
  CLUS_3                            4                            184
  CLUS_4                            6                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED        0      2      0
  AMP PEAK 17(17Q25.1) WILD-TYPE      9      8      8
D17V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q25.1) MUTATED"
clus
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 17(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        0      2      0      0
  AMP PEAK 17(17Q25.1) WILD-TYPE      7      5      7      6
D17V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q25.1) MUTATED"
clus
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 17(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       21     11     12
  AMP PEAK 17(17Q25.1) WILD-TYPE    151    109    209
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           21                            151
  CLUS_2                           11                            109
  CLUS_3                           12                            209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       22      9     12      1
  AMP PEAK 17(17Q25.1) WILD-TYPE    203     72    155     39
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           22                            203
  CLUS_2                            9                             72
  CLUS_3                           12                            155
  CLUS_4                            1                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        4      6      2      3
  AMP PEAK 17(17Q25.1) WILD-TYPE     48     56     66     71
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            6                             56
  CLUS_3                            2                             66
  CLUS_4                            3                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED        6      6      3
  AMP PEAK 17(17Q25.1) WILD-TYPE     61    125     55
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            6                            125
  CLUS_3                            3                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q25.1) MUTATED       11     17      7      9      0
  AMP PEAK 17(17Q25.1) WILD-TYPE    124     95    101    119     28
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           11                            124
  CLUS_2                           17                             95
  CLUS_3                            7                            101
  CLUS_4                            9                            119
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       10     17      9      8
  AMP PEAK 17(17Q25.1) WILD-TYPE    125     96    116    130
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                           17                             96
  CLUS_3                            9                            116
  CLUS_4                            8                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       13     14     10      7
  AMP PEAK 17(17Q25.1) WILD-TYPE    124     93    173     75
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           13                            124
  CLUS_2                           14                             93
  CLUS_3                           10                            173
  CLUS_4                            7                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       20     13     11
  AMP PEAK 17(17Q25.1) WILD-TYPE    202    171     92
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           20                            202
  CLUS_2                           13                            171
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       14     19     10
  AMP PEAK 17(17Q25.1) WILD-TYPE    171    142    149
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           14                            171
  CLUS_2                           19                            142
  CLUS_3                           10                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        9     14     12      8
  AMP PEAK 17(17Q25.1) WILD-TYPE     82    123    176     81
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                           14                            123
  CLUS_3                           12                            176
  CLUS_4                            8                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED        1      6      2
  AMP PEAK 18(19P13.3) WILD-TYPE      8      4      6
D18V1, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED        1      2      5      1
  AMP PEAK 18(19P13.3) WILD-TYPE      6      5      2      5
D18V2, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            5                              2
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED        9     40     80
  AMP PEAK 18(19P13.3) WILD-TYPE    163     80    141
D18V3, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            9                            163
  CLUS_2                           40                             80
  CLUS_3                           80                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       19     27     80      3
  AMP PEAK 18(19P13.3) WILD-TYPE    206     54     87     37
D18V4, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           19                            206
  CLUS_2                           27                             54
  CLUS_3                           80                             87
  CLUS_4                            3                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       11     16     15     15
  AMP PEAK 18(19P13.3) WILD-TYPE     41     46     53     59
D18V5, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           11                             41
  CLUS_2                           16                             46
  CLUS_3                           15                             53
  CLUS_4                           15                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       15     32     10
  AMP PEAK 18(19P13.3) WILD-TYPE     52     99     48
D18V6, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           15                             52
  CLUS_2                           32                             99
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19P13.3) MUTATED       10     30     56     31      2
  AMP PEAK 18(19P13.3) WILD-TYPE    125     82     52     97     26
D18V7, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                           30                             82
  CLUS_3                           56                             52
  CLUS_4                           31                             97
  CLUS_5                            2                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED        8     31     58     32
  AMP PEAK 18(19P13.3) WILD-TYPE    127     82     67    106
D18V8, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            8                            127
  CLUS_2                           31                             82
  CLUS_3                           58                             67
  CLUS_4                           32                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       24     23     45     37
  AMP PEAK 18(19P13.3) WILD-TYPE    113     84    138     45
D18V9, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           24                            113
  CLUS_2                           23                             84
  CLUS_3                           45                            138
  CLUS_4                           37                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       47     52     30
  AMP PEAK 18(19P13.3) WILD-TYPE    175    132     73
D18V10, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           47                            175
  CLUS_2                           52                            132
  CLUS_3                           30                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       37     51     41
  AMP PEAK 18(19P13.3) WILD-TYPE    148    110    118
D18V11, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           37                            148
  CLUS_2                           51                            110
  CLUS_3                           41                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       10     46     47     26
  AMP PEAK 18(19P13.3) WILD-TYPE     81     91    141     63
D18V12, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           10                             81
  CLUS_2                           46                             91
  CLUS_3                           47                            141
  CLUS_4                           26                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED        1      6      2
  AMP PEAK 19(19P13.2) WILD-TYPE      8      4      6
D19V1, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        1      2      5      1
  AMP PEAK 19(19P13.2) WILD-TYPE      6      5      2      5
D19V2, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            5                              2
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED        6     42     74
  AMP PEAK 19(19P13.2) WILD-TYPE    166     78    147
D19V3, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            6                            166
  CLUS_2                           42                             78
  CLUS_3                           74                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       12     30     77      3
  AMP PEAK 19(19P13.2) WILD-TYPE    213     51     90     37
D19V4, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           12                            213
  CLUS_2                           30                             51
  CLUS_3                           77                             90
  CLUS_4                            3                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        9     19     13     14
  AMP PEAK 19(19P13.2) WILD-TYPE     43     43     55     60
D19V5, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           19                             43
  CLUS_3                           13                             55
  CLUS_4                           14                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       12     34      9
  AMP PEAK 19(19P13.2) WILD-TYPE     55     97     49
D19V6, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                           34                             97
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(19P13.2) MUTATED        6     34     54     25      3
  AMP PEAK 19(19P13.2) WILD-TYPE    129     78     54    103     25
D19V7, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                           34                             78
  CLUS_3                           54                             54
  CLUS_4                           25                            103
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        6     33     57     26
  AMP PEAK 19(19P13.2) WILD-TYPE    129     80     68    112
D19V8, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                           33                             80
  CLUS_3                           57                             68
  CLUS_4                           26                            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       26     21     39     36
  AMP PEAK 19(19P13.2) WILD-TYPE    111     86    144     46
D19V9, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           26                            111
  CLUS_2                           21                             86
  CLUS_3                           39                            144
  CLUS_4                           36                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       45     46     31
  AMP PEAK 19(19P13.2) WILD-TYPE    177    138     72
D19V10, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           45                            177
  CLUS_2                           46                            138
  CLUS_3                           31                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       36     50     36
  AMP PEAK 19(19P13.2) WILD-TYPE    149    111    123
D19V11, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           36                            149
  CLUS_2                           50                            111
  CLUS_3                           36                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        9     41     43     29
  AMP PEAK 19(19P13.2) WILD-TYPE     82     96    145     60
D19V12, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                           41                             96
  CLUS_3                           43                            145
  CLUS_4                           29                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED        1      1      2
  AMP PEAK 20(XP11.22) WILD-TYPE      8      9      6
D20V1, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 20(XP11.22) WILD-TYPE      6      6      6      5
D20V2, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       33      8      7
  AMP PEAK 20(XP11.22) WILD-TYPE    139    112    214
D20V3, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                            8                            112
  CLUS_3                            7                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       41      5      1      1
  AMP PEAK 20(XP11.22) WILD-TYPE    184     76    166     39
D20V4, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           41                            184
  CLUS_2                            5                             76
  CLUS_3                            1                            166
  CLUS_4                            1                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED        4      8      9      4
  AMP PEAK 20(XP11.22) WILD-TYPE     48     54     59     70
D20V5, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            8                             54
  CLUS_3                            9                             59
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED        5     15      5
  AMP PEAK 20(XP11.22) WILD-TYPE     62    116     53
D20V6, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           15                            116
  CLUS_3                            5                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP11.22) MUTATED       19     12      1     13      3
  AMP PEAK 20(XP11.22) WILD-TYPE    116    100    107    115     25
D20V7, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           19                            116
  CLUS_2                           12                            100
  CLUS_3                            1                            107
  CLUS_4                           13                            115
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       22     11      1     14
  AMP PEAK 20(XP11.22) WILD-TYPE    113    102    124    124
D20V8, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                           11                            102
  CLUS_3                            1                            124
  CLUS_4                           14                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       16     13     16      2
  AMP PEAK 20(XP11.22) WILD-TYPE    121     94    167     80
D20V9, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           16                            121
  CLUS_2                           13                             94
  CLUS_3                           16                            167
  CLUS_4                            2                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       22     14     11
  AMP PEAK 20(XP11.22) WILD-TYPE    200    170     92
D20V10, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           22                            200
  CLUS_2                           14                            170
  CLUS_3                           11                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       22     13     12
  AMP PEAK 20(XP11.22) WILD-TYPE    163    148    147
D20V11, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           22                            163
  CLUS_2                           13                            148
  CLUS_3                           12                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       15     10     15      7
  AMP PEAK 20(XP11.22) WILD-TYPE     76    127    173     82
D20V12, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           15                             76
  CLUS_2                           10                            127
  CLUS_3                           15                            173
  CLUS_4                            7                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED        1      1      2
  AMP PEAK 21(XP11.22) WILD-TYPE      8      9      6
D21V1, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 21(XP11.22) WILD-TYPE      6      6      6      5
D21V2, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED       47      7      9
  AMP PEAK 21(XP11.22) WILD-TYPE    125    113    212
D21V3, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           47                            125
  CLUS_2                            7                            113
  CLUS_3                            9                            212
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       54      6      1      2
  AMP PEAK 21(XP11.22) WILD-TYPE    171     75    166     38
D21V4, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           54                            171
  CLUS_2                            6                             75
  CLUS_3                            1                            166
  CLUS_4                            2                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED        5     14     13      5
  AMP PEAK 21(XP11.22) WILD-TYPE     47     48     55     69
D21V5, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                           14                             48
  CLUS_3                           13                             55
  CLUS_4                            5                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED        7     23      7
  AMP PEAK 21(XP11.22) WILD-TYPE     60    108     51
D21V6, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                           23                            108
  CLUS_3                            7                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP11.22) MUTATED       27     17      1     15      3
  AMP PEAK 21(XP11.22) WILD-TYPE    108     95    107    113     25
D21V7, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           17                             95
  CLUS_3                            1                            107
  CLUS_4                           15                            113
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       30     16      1     16
  AMP PEAK 21(XP11.22) WILD-TYPE    105     97    124    122
D21V8, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                           16                             97
  CLUS_3                            1                            124
  CLUS_4                           16                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       22     19     20      1
  AMP PEAK 21(XP11.22) WILD-TYPE    115     88    163     81
D21V9, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           22                            115
  CLUS_2                           19                             88
  CLUS_3                           20                            163
  CLUS_4                            1                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED       28     18     16
  AMP PEAK 21(XP11.22) WILD-TYPE    194    166     87
D21V10, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           28                            194
  CLUS_2                           18                            166
  CLUS_3                           16                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED       31     15     16
  AMP PEAK 21(XP11.22) WILD-TYPE    154    146    143
D21V11, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           31                            154
  CLUS_2                           15                            146
  CLUS_3                           16                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       21     11     21      9
  AMP PEAK 21(XP11.22) WILD-TYPE     70    126    167     80
D21V12, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           21                             70
  CLUS_2                           11                            126
  CLUS_3                           21                            167
  CLUS_4                            9                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        0      8      2
  DEL PEAK  1(1P36.32) WILD-TYPE      9      2      6
D22V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            8                              2
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        0      1      7      2
  DEL PEAK  1(1P36.32) WILD-TYPE      7      6      0      4
D22V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            1                              6
  CLUS_3                            7                              0
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       10     29    167
  DEL PEAK  1(1P36.32) WILD-TYPE    162     91     54
D22V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           10                            162
  CLUS_2                           29                             91
  CLUS_3                          167                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11     19    166     10
  DEL PEAK  1(1P36.32) WILD-TYPE    214     62      1     30
D22V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                            214
  CLUS_2                           19                             62
  CLUS_3                          166                              1
  CLUS_4                           10                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        8     20     29     36
  DEL PEAK  1(1P36.32) WILD-TYPE     44     42     39     38
D22V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                           20                             42
  CLUS_3                           29                             39
  CLUS_4                           36                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       24     46     23
  DEL PEAK  1(1P36.32) WILD-TYPE     43     85     35
D22V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                             43
  CLUS_2                           46                             85
  CLUS_3                           23                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        5     22    107     58     14
  DEL PEAK  1(1P36.32) WILD-TYPE    130     90      1     70     14
D22V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                            130
  CLUS_2                           22                             90
  CLUS_3                          107                              1
  CLUS_4                           58                             70
  CLUS_5                           14                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        7     21    123     55
  DEL PEAK  1(1P36.32) WILD-TYPE    128     92      2     83
D22V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                           21                             92
  CLUS_3                          123                              2
  CLUS_4                           55                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       33     13     92     68
  DEL PEAK  1(1P36.32) WILD-TYPE    104     94     91     14
D22V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           33                            104
  CLUS_2                           13                             94
  CLUS_3                           92                             91
  CLUS_4                           68                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       84    101     21
  DEL PEAK  1(1P36.32) WILD-TYPE    138     83     82
D22V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           84                            138
  CLUS_2                          101                             83
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       44     83     79
  DEL PEAK  1(1P36.32) WILD-TYPE    141     78     80
D22V11, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           44                            141
  CLUS_2                           83                             78
  CLUS_3                           79                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        7     83     95     21
  DEL PEAK  1(1P36.32) WILD-TYPE     84     54     93     68
D22V12, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             84
  CLUS_2                           83                             54
  CLUS_3                           95                             93
  CLUS_4                           21                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  2(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      8      3      6
D23V1, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           7                             3
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        0      1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      7      6      0      4
D23V2, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           1                             6
  CLUS_3                           7                             0
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        6     24    166
  DEL PEAK  2(1P32.3) WILD-TYPE    166     96     55
D23V3, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           6                           166
  CLUS_2                          24                            96
  CLUS_3                         166                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        5     15    166     10
  DEL PEAK  2(1P32.3) WILD-TYPE    220     66      1     30
D23V4, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           220
  CLUS_2                          15                            66
  CLUS_3                         166                             1
  CLUS_4                          10                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        8     16     28     35
  DEL PEAK  2(1P32.3) WILD-TYPE     44     46     40     39
D23V5, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          16                            46
  CLUS_3                          28                            40
  CLUS_4                          35                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       24     41     22
  DEL PEAK  2(1P32.3) WILD-TYPE     43     90     36
D23V6, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          41                            90
  CLUS_3                          22                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P32.3) MUTATED        4     17    107     55     13
  DEL PEAK  2(1P32.3) WILD-TYPE    131     95      1     73     15
D23V7, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           4                           131
  CLUS_2                          17                            95
  CLUS_3                         107                             1
  CLUS_4                          55                            73
  CLUS_5                          13                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        5     17    123     51
  DEL PEAK  2(1P32.3) WILD-TYPE    130     96      2     87
D23V8, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           130
  CLUS_2                          17                            96
  CLUS_3                         123                             2
  CLUS_4                          51                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       33     10     86     67
  DEL PEAK  2(1P32.3) WILD-TYPE    104     97     97     15
D23V9, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          33                           104
  CLUS_2                          10                            97
  CLUS_3                          86                            97
  CLUS_4                          67                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       82     96     18
  DEL PEAK  2(1P32.3) WILD-TYPE    140     88     85
D23V10, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          82                           140
  CLUS_2                          96                            88
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       39     82     75
  DEL PEAK  2(1P32.3) WILD-TYPE    146     79     84
D23V11, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          39                           146
  CLUS_2                          82                            79
  CLUS_3                          75                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        7     82     90     17
  DEL PEAK  2(1P32.3) WILD-TYPE     84     55     98     72
D23V12, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                            84
  CLUS_2                          82                            55
  CLUS_3                          90                            98
  CLUS_4                          17                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      7     10      8
D24V1, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        1      1      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      6      6      7      6
D24V2, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       14      7     10
  DEL PEAK  3(1Q43) WILD-TYPE    158    113    211
D24V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         158
  CLUS_2                         7                         113
  CLUS_3                        10                         211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       20      4      3      4
  DEL PEAK  3(1Q43) WILD-TYPE    205     77    164     36
D24V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        20                         205
  CLUS_2                         4                          77
  CLUS_3                         3                         164
  CLUS_4                         4                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        2      8      2      3
  DEL PEAK  3(1Q43) WILD-TYPE     50     54     66     71
D24V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         2                          66
  CLUS_4                         3                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      9      4
  DEL PEAK  3(1Q43) WILD-TYPE     65    122     54
D24V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          65
  CLUS_2                         9                         122
  CLUS_3                         4                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED       14      7      1      8      1
  DEL PEAK  3(1Q43) WILD-TYPE    121    105    107    120     27
D24V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         121
  CLUS_2                         7                         105
  CLUS_3                         1                         107
  CLUS_4                         8                         120
  CLUS_5                         1                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       15      6      2      8
  DEL PEAK  3(1Q43) WILD-TYPE    120    107    123    130
D24V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        15                         120
  CLUS_2                         6                         107
  CLUS_3                         2                         123
  CLUS_4                         8                         130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        7     11      9      3
  DEL PEAK  3(1Q43) WILD-TYPE    130     96    174     79
D24V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         7                         130
  CLUS_2                        11                          96
  CLUS_3                         9                         174
  CLUS_4                         3                          79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       14      9      7
  DEL PEAK  3(1Q43) WILD-TYPE    208    175     96
D24V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         208
  CLUS_2                         9                         175
  CLUS_3                         7                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       11     11      8
  DEL PEAK  3(1Q43) WILD-TYPE    174    150    151
D24V11, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        11                         174
  CLUS_2                        11                         150
  CLUS_3                         8                         151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        9      6      9      6
  DEL PEAK  3(1Q43) WILD-TYPE     82    131    179     83
D24V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                          82
  CLUS_2                         6                         131
  CLUS_3                         9                         179
  CLUS_4                         6                          83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      9      5
D25V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           1                             9
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      4      0      2
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      3      7      4
D25V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           4                             3
  CLUS_3                           0                             7
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       44     22     11
  DEL PEAK  4(2Q37.3) WILD-TYPE    128     98    210
D25V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          44                           128
  CLUS_2                          22                            98
  CLUS_3                          11                           210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       64      4      6      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    161     77    161     37
D25V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          64                           161
  CLUS_2                           4                            77
  CLUS_3                           6                           161
  CLUS_4                           3                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        8     17     10      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     44     45     58     70
D25V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          17                            45
  CLUS_3                          10                            58
  CLUS_4                           4                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        5     28      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     62    103     52
D25V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                          28                           103
  CLUS_3                           6                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       33     22      6     13      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    102     90    102    115     25
D25V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          33                           102
  CLUS_2                          22                            90
  CLUS_3                           6                           102
  CLUS_4                          13                           115
  CLUS_5                           3                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       31     23      6     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    104     90    119    121
D25V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          31                           104
  CLUS_2                          23                            90
  CLUS_3                           6                           119
  CLUS_4                          17                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       25     24     19      8
  DEL PEAK  4(2Q37.3) WILD-TYPE    112     83    164     74
D25V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          25                           112
  CLUS_2                          24                            83
  CLUS_3                          19                           164
  CLUS_4                           8                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       41     21     14
  DEL PEAK  4(2Q37.3) WILD-TYPE    181    163     89
D25V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          41                           181
  CLUS_2                          21                           163
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       35     23     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    150    138    142
D25V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          35                           150
  CLUS_2                          23                           138
  CLUS_3                          17                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       21     21     24      9
  DEL PEAK  4(2Q37.3) WILD-TYPE     70    116    164     80
D25V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          21                            70
  CLUS_2                          21                           116
  CLUS_3                          24                           164
  CLUS_4                           9                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        1      2      1
  DEL PEAK  5(3P21.31) WILD-TYPE      8      8      7
D26V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        0      4      0      0
  DEL PEAK  5(3P21.31) WILD-TYPE      7      3      7      6
D26V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       26     15      8
  DEL PEAK  5(3P21.31) WILD-TYPE    146    105    213
D26V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           26                            146
  CLUS_2                           15                            105
  CLUS_3                            8                            213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       32      9      6      2
  DEL PEAK  5(3P21.31) WILD-TYPE    193     72    161     38
D26V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           32                            193
  CLUS_2                            9                             72
  CLUS_3                            6                            161
  CLUS_4                            2                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        3     14      3      4
  DEL PEAK  5(3P21.31) WILD-TYPE     49     48     65     70
D26V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            3                             49
  CLUS_2                           14                             48
  CLUS_3                            3                             65
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        3     15      6
  DEL PEAK  5(3P21.31) WILD-TYPE     64    116     52
D26V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                           15                            116
  CLUS_3                            6                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       16     17      5     11      0
  DEL PEAK  5(3P21.31) WILD-TYPE    119     95    103    117     28
D26V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           16                            119
  CLUS_2                           17                             95
  CLUS_3                            5                            103
  CLUS_4                           11                            117
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       15     19      5     10
  DEL PEAK  5(3P21.31) WILD-TYPE    120     94    120    128
D26V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                           19                             94
  CLUS_3                            5                            120
  CLUS_4                           10                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       12     21      8      8
  DEL PEAK  5(3P21.31) WILD-TYPE    125     86    175     74
D26V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           12                            125
  CLUS_2                           21                             86
  CLUS_3                            8                            175
  CLUS_4                            8                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       24      8     17
  DEL PEAK  5(3P21.31) WILD-TYPE    198    176     86
D26V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           24                            198
  CLUS_2                            8                            176
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       20     15     13
  DEL PEAK  5(3P21.31) WILD-TYPE    165    146    146
D26V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           20                            165
  CLUS_2                           15                            146
  CLUS_3                           13                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       13     14     10     11
  DEL PEAK  5(3P21.31) WILD-TYPE     78    123    178     78
D26V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           13                             78
  CLUS_2                           14                            123
  CLUS_3                           10                            178
  CLUS_4                           11                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  6(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED        1      0      2
  DEL PEAK  6(3Q13.31) WILD-TYPE      8     10      6
D27V1, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                             10
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED        1      1      0      1
  DEL PEAK  6(3Q13.31) WILD-TYPE      6      6      7      5
D27V2, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED       25      8      6
  DEL PEAK  6(3Q13.31) WILD-TYPE    147    112    215
D27V3, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           25                            147
  CLUS_2                            8                            112
  CLUS_3                            6                            215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED       26      7      4      2
  DEL PEAK  6(3Q13.31) WILD-TYPE    199     74    163     38
D27V4, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           26                            199
  CLUS_2                            7                             74
  CLUS_3                            4                            163
  CLUS_4                            2                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED        4      9      6      4
  DEL PEAK  6(3Q13.31) WILD-TYPE     48     53     62     70
D27V5, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            9                             53
  CLUS_3                            6                             62
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED        3     16      4
  DEL PEAK  6(3Q13.31) WILD-TYPE     64    115     54
D27V6, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                           16                            115
  CLUS_3                            4                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q13.31) MUTATED       14     10      3     11      1
  DEL PEAK  6(3Q13.31) WILD-TYPE    121    102    105    117     27
D27V7, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           14                            121
  CLUS_2                           10                            102
  CLUS_3                            3                            105
  CLUS_4                           11                            117
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED       14     12      3     10
  DEL PEAK  6(3Q13.31) WILD-TYPE    121    101    122    128
D27V8, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           14                            121
  CLUS_2                           12                            101
  CLUS_3                            3                            122
  CLUS_4                           10                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED        9     14     12      4
  DEL PEAK  6(3Q13.31) WILD-TYPE    128     93    171     78
D27V9, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                            9                            128
  CLUS_2                           14                             93
  CLUS_3                           12                            171
  CLUS_4                            4                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED       16      6     17
  DEL PEAK  6(3Q13.31) WILD-TYPE    206    178     86
D27V10, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           16                            206
  CLUS_2                            6                            178
  CLUS_3                           17                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q13.31) MUTATED       17     10     11
  DEL PEAK  6(3Q13.31) WILD-TYPE    168    151    148
D27V11, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           17                            168
  CLUS_2                           10                            151
  CLUS_3                           11                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q13.31) MUTATED       10     11      8      9
  DEL PEAK  6(3Q13.31) WILD-TYPE     81    126    180     80
D27V12, multiclass
        clus
vv       DEL PEAK  6(3Q13.31) MUTATED DEL PEAK  6(3Q13.31) WILD-TYPE
  CLUS_1                           10                             81
  CLUS_2                           11                            126
  CLUS_3                            8                            180
  CLUS_4                            9                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  7(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        1      0      2
  DEL PEAK  7(3Q29) WILD-TYPE      8     10      6
D28V1, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         0                          10
  CLUS_3                         2                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED        1      1      0      1
  DEL PEAK  7(3Q29) WILD-TYPE      6      6      7      5
D28V2, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       33     10      4
  DEL PEAK  7(3Q29) WILD-TYPE    139    110    217
D28V3, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        33                         139
  CLUS_2                        10                         110
  CLUS_3                         4                         217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       31      8      4      4
  DEL PEAK  7(3Q29) WILD-TYPE    194     73    163     36
D28V4, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        31                         194
  CLUS_2                         8                          73
  CLUS_3                         4                         163
  CLUS_4                         4                          36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED        5      9      4      6
  DEL PEAK  7(3Q29) WILD-TYPE     47     53     64     68
D28V5, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         5                          47
  CLUS_2                         9                          53
  CLUS_3                         4                          64
  CLUS_4                         6                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        7     12      5
  DEL PEAK  7(3Q29) WILD-TYPE     60    119     53
D28V6, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         7                          60
  CLUS_2                        12                         119
  CLUS_3                         5                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       17     16      2     11      1
  DEL PEAK  7(3Q29) WILD-TYPE    118     96    106    117     27
D28V7, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        17                         118
  CLUS_2                        16                          96
  CLUS_3                         2                         106
  CLUS_4                        11                         117
  CLUS_5                         1                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       16     18      3     10
  DEL PEAK  7(3Q29) WILD-TYPE    119     95    122    128
D28V8, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        16                         119
  CLUS_2                        18                          95
  CLUS_3                         3                         122
  CLUS_4                        10                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       13     16     13      5
  DEL PEAK  7(3Q29) WILD-TYPE    124     91    170     77
D28V9, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        13                         124
  CLUS_2                        16                          91
  CLUS_3                        13                         170
  CLUS_4                         5                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       19     10     18
  DEL PEAK  7(3Q29) WILD-TYPE    203    174     85
D28V10, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        19                         203
  CLUS_2                        10                         174
  CLUS_3                        18                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       19     15     12
  DEL PEAK  7(3Q29) WILD-TYPE    166    146    147
D28V11, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        19                         166
  CLUS_2                        15                         146
  CLUS_3                        12                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       11     11     12     12
  DEL PEAK  7(3Q29) WILD-TYPE     80    126    176     77
D28V12, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        11                          80
  CLUS_2                        11                         126
  CLUS_3                        12                         176
  CLUS_4                        12                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  8(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED        4      4      3
  DEL PEAK  8(4Q34.3) WILD-TYPE      5      6      5
D29V1, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           4                             6
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED        2      5      2      2
  DEL PEAK  8(4Q34.3) WILD-TYPE      5      2      5      4
D29V2, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           5                             2
  CLUS_3                           2                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       58     22     58
  DEL PEAK  8(4Q34.3) WILD-TYPE    114     98    163
D29V3, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          58                           114
  CLUS_2                          22                            98
  CLUS_3                          58                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       78      5     51      4
  DEL PEAK  8(4Q34.3) WILD-TYPE    147     76    116     36
D29V4, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          78                           147
  CLUS_2                           5                            76
  CLUS_3                          51                           116
  CLUS_4                           4                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED        9     21     23     21
  DEL PEAK  8(4Q34.3) WILD-TYPE     43     41     45     53
D29V5, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                           9                            43
  CLUS_2                          21                            41
  CLUS_3                          23                            45
  CLUS_4                          21                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       15     44     15
  DEL PEAK  8(4Q34.3) WILD-TYPE     52     87     43
D29V6, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                          44                            87
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q34.3) MUTATED       39     22     34     39      3
  DEL PEAK  8(4Q34.3) WILD-TYPE     96     90     74     89     25
D29V7, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          39                            96
  CLUS_2                          22                            90
  CLUS_3                          34                            74
  CLUS_4                          39                            89
  CLUS_5                           3                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       36     21     42     38
  DEL PEAK  8(4Q34.3) WILD-TYPE     99     92     83    100
D29V8, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          36                            99
  CLUS_2                          21                            92
  CLUS_3                          42                            83
  CLUS_4                          38                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       25     31     52     29
  DEL PEAK  8(4Q34.3) WILD-TYPE    112     76    131     53
D29V9, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          25                           112
  CLUS_2                          31                            76
  CLUS_3                          52                           131
  CLUS_4                          29                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       62     57     18
  DEL PEAK  8(4Q34.3) WILD-TYPE    160    127     85
D29V10, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          62                           160
  CLUS_2                          57                           127
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q34.3) MUTATED       33     55     49
  DEL PEAK  8(4Q34.3) WILD-TYPE    152    106    110
D29V11, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          33                           152
  CLUS_2                          55                           106
  CLUS_3                          49                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q34.3) MUTATED       24     46     55     12
  DEL PEAK  8(4Q34.3) WILD-TYPE     67     91    133     77
D29V12, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          24                            67
  CLUS_2                          46                            91
  CLUS_3                          55                           133
  CLUS_4                          12                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED        2      3      2
  DEL PEAK  9(5P15.33) WILD-TYPE      7      7      6
D30V1, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                              7
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED        1      4      0      2
  DEL PEAK  9(5P15.33) WILD-TYPE      6      3      7      4
D30V2, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED       33     12      5
  DEL PEAK  9(5P15.33) WILD-TYPE    139    108    216
D30V3, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           33                            139
  CLUS_2                           12                            108
  CLUS_3                            5                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED       37      9      3      1
  DEL PEAK  9(5P15.33) WILD-TYPE    188     72    164     39
D30V4, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           37                            188
  CLUS_2                            9                             72
  CLUS_3                            3                            164
  CLUS_4                            1                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED        6      5      8      9
  DEL PEAK  9(5P15.33) WILD-TYPE     46     57     60     65
D30V5, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                            5                             57
  CLUS_3                            8                             60
  CLUS_4                            9                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED        8     12      8
  DEL PEAK  9(5P15.33) WILD-TYPE     59    119     50
D30V6, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           12                            119
  CLUS_3                            8                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5P15.33) MUTATED       16     17      2     11      3
  DEL PEAK  9(5P15.33) WILD-TYPE    119     95    106    117     25
D30V7, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           16                            119
  CLUS_2                           17                             95
  CLUS_3                            2                            106
  CLUS_4                           11                            117
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED       17     16      2     14
  DEL PEAK  9(5P15.33) WILD-TYPE    118     97    123    124
D30V8, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           17                            118
  CLUS_2                           16                             97
  CLUS_3                            2                            123
  CLUS_4                           14                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED       11     20     17      2
  DEL PEAK  9(5P15.33) WILD-TYPE    126     87    166     80
D30V9, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           11                            126
  CLUS_2                           20                             87
  CLUS_3                           17                            166
  CLUS_4                            2                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED       20     15     15
  DEL PEAK  9(5P15.33) WILD-TYPE    202    169     88
D30V10, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           20                            202
  CLUS_2                           15                            169
  CLUS_3                           15                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5P15.33) MUTATED       18     17     15
  DEL PEAK  9(5P15.33) WILD-TYPE    167    144    144
D30V11, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           18                            167
  CLUS_2                           17                            144
  CLUS_3                           15                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5P15.33) MUTATED        9     12     16     13
  DEL PEAK  9(5P15.33) WILD-TYPE     82    125    172     76
D30V12, multiclass
        clus
vv       DEL PEAK  9(5P15.33) MUTATED DEL PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                           12                            125
  CLUS_3                           16                            172
  CLUS_4                           13                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 10(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED        1      2      3
  DEL PEAK 10(5Q34) WILD-TYPE      8      8      5
D31V1, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED        1      3      0      2
  DEL PEAK 10(5Q34) WILD-TYPE      6      4      7      4
D31V2, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         3                           4
  CLUS_3                         0                           7
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED       49      7      8
  DEL PEAK 10(5Q34) WILD-TYPE    123    113    213
D31V3, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        49                         123
  CLUS_2                         7                         113
  CLUS_3                         8                         213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       52      7      2      3
  DEL PEAK 10(5Q34) WILD-TYPE    173     74    165     37
D31V4, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        52                         173
  CLUS_2                         7                          74
  CLUS_3                         2                         165
  CLUS_4                         3                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED        7     13      6      7
  DEL PEAK 10(5Q34) WILD-TYPE     45     49     62     67
D31V5, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                         7                          45
  CLUS_2                        13                          49
  CLUS_3                         6                          62
  CLUS_4                         7                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED        9     17      7
  DEL PEAK 10(5Q34) WILD-TYPE     58    114     51
D31V6, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                         9                          58
  CLUS_2                        17                         114
  CLUS_3                         7                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q34) MUTATED       19     24      2     13      5
  DEL PEAK 10(5Q34) WILD-TYPE    116     88    106    115     23
D31V7, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        19                         116
  CLUS_2                        24                          88
  CLUS_3                         2                         106
  CLUS_4                        13                         115
  CLUS_5                         5                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       20     25      2     16
  DEL PEAK 10(5Q34) WILD-TYPE    115     88    123    122
D31V8, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        20                         115
  CLUS_2                        25                          88
  CLUS_3                         2                         123
  CLUS_4                        16                         122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       15     28     18      3
  DEL PEAK 10(5Q34) WILD-TYPE    122     79    165     79
D31V9, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        15                         122
  CLUS_2                        28                          79
  CLUS_3                        18                         165
  CLUS_4                         3                          79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED       25     20     19
  DEL PEAK 10(5Q34) WILD-TYPE    197    164     84
D31V10, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        25                         197
  CLUS_2                        20                         164
  CLUS_3                        19                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q34) MUTATED       27     18     19
  DEL PEAK 10(5Q34) WILD-TYPE    158    143    140
D31V11, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        27                         158
  CLUS_2                        18                         143
  CLUS_3                        19                         140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q34) MUTATED       13     16     21     14
  DEL PEAK 10(5Q34) WILD-TYPE     78    121    167     75
D31V12, multiclass
        clus
vv       DEL PEAK 10(5Q34) MUTATED DEL PEAK 10(5Q34) WILD-TYPE
  CLUS_1                        13                          78
  CLUS_2                        16                         121
  CLUS_3                        21                         167
  CLUS_4                        14                          75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 11(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED        0      0      1
  DEL PEAK 11(6P25.3) WILD-TYPE      9     10      7
D32V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 11(6P25.3) MUTATED"
clus
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        0      1      0      0
  DEL PEAK 11(6P25.3) WILD-TYPE      7      6      7      6
D32V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 11(6P25.3) MUTATED"
clus
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 11(6P25.3) WILD-TYPE" "DEL PEAK 11(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       25     17      8
  DEL PEAK 11(6P25.3) WILD-TYPE    147    103    213
D32V3, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          25                           147
  CLUS_2                          17                           103
  CLUS_3                           8                           213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       27     11      8      4
  DEL PEAK 11(6P25.3) WILD-TYPE    198     70    159     36
D32V4, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          27                           198
  CLUS_2                          11                            70
  CLUS_3                           8                           159
  CLUS_4                           4                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        6      9      3      8
  DEL PEAK 11(6P25.3) WILD-TYPE     46     53     65     66
D32V5, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           6                            46
  CLUS_2                           9                            53
  CLUS_3                           3                            65
  CLUS_4                           8                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED        7     14      5
  DEL PEAK 11(6P25.3) WILD-TYPE     60    117     53
D32V6, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                          14                           117
  CLUS_3                           5                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6P25.3) MUTATED       13     17      7      7      4
  DEL PEAK 11(6P25.3) WILD-TYPE    122     95    101    121     24
D32V7, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                          17                            95
  CLUS_3                           7                           101
  CLUS_4                           7                           121
  CLUS_5                           4                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       15     16      8      9
  DEL PEAK 11(6P25.3) WILD-TYPE    120     97    117    129
D32V8, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          15                           120
  CLUS_2                          16                            97
  CLUS_3                           8                           117
  CLUS_4                           9                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       16     13     13      8
  DEL PEAK 11(6P25.3) WILD-TYPE    121     94    170     74
D32V9, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          16                           121
  CLUS_2                          13                            94
  CLUS_3                          13                           170
  CLUS_4                           8                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       22     14     14
  DEL PEAK 11(6P25.3) WILD-TYPE    200    170     89
D32V10, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          22                           200
  CLUS_2                          14                           170
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       24     11     14
  DEL PEAK 11(6P25.3) WILD-TYPE    161    150    145
D32V11, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          24                           161
  CLUS_2                          11                           150
  CLUS_3                          14                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED        9     12     13     15
  DEL PEAK 11(6P25.3) WILD-TYPE     82    125    175     74
D32V12, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           9                            82
  CLUS_2                          12                           125
  CLUS_3                          13                           175
  CLUS_4                          15                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 12(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED        2      1      0
  DEL PEAK 12(6Q22.31) WILD-TYPE      7      9      8
D33V1, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            0                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED        2      1      0      0
  DEL PEAK 12(6Q22.31) WILD-TYPE      5      6      7      6
D33V2, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED       29     31     18
  DEL PEAK 12(6Q22.31) WILD-TYPE    143     89    203
D33V3, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           29                            143
  CLUS_2                           31                             89
  CLUS_3                           18                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       49     16      8      5
  DEL PEAK 12(6Q22.31) WILD-TYPE    176     65    159     35
D33V4, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           49                            176
  CLUS_2                           16                             65
  CLUS_3                            8                            159
  CLUS_4                            5                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED        7     16      7     11
  DEL PEAK 12(6Q22.31) WILD-TYPE     45     46     61     63
D33V5, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                            7                             45
  CLUS_2                           16                             46
  CLUS_3                            7                             61
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED        8     24      9
  DEL PEAK 12(6Q22.31) WILD-TYPE     59    107     49
D33V6, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           24                            107
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q22.31) MUTATED       25     26      7     15      4
  DEL PEAK 12(6Q22.31) WILD-TYPE    110     86    101    113     24
D33V7, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           25                            110
  CLUS_2                           26                             86
  CLUS_3                            7                            101
  CLUS_4                           15                            113
  CLUS_5                            4                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       27     25      7     18
  DEL PEAK 12(6Q22.31) WILD-TYPE    108     88    118    120
D33V8, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           25                             88
  CLUS_3                            7                            118
  CLUS_4                           18                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       34     18     19      6
  DEL PEAK 12(6Q22.31) WILD-TYPE    103     89    164     76
D33V9, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           34                            103
  CLUS_2                           18                             89
  CLUS_3                           19                            164
  CLUS_4                            6                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED       35     21     21
  DEL PEAK 12(6Q22.31) WILD-TYPE    187    163     82
D33V10, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           35                            187
  CLUS_2                           21                            163
  CLUS_3                           21                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q22.31) MUTATED       40     18     17
  DEL PEAK 12(6Q22.31) WILD-TYPE    145    143    142
D33V11, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           40                            145
  CLUS_2                           18                            143
  CLUS_3                           17                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q22.31) MUTATED       24     11     18     22
  DEL PEAK 12(6Q22.31) WILD-TYPE     67    126    170     67
D33V12, multiclass
        clus
vv       DEL PEAK 12(6Q22.31) MUTATED DEL PEAK 12(6Q22.31) WILD-TYPE
  CLUS_1                           24                             67
  CLUS_2                           11                            126
  CLUS_3                           18                            170
  CLUS_4                           22                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 13(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q24.3) MUTATED        3      1      0
  DEL PEAK 13(6Q24.3) WILD-TYPE      6      9      8
D34V1, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                             9
  CLUS_3                           0                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q24.3) MUTATED        2      2      0      0
  DEL PEAK 13(6Q24.3) WILD-TYPE      5      5      7      6
D34V2, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           2                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q24.3) MUTATED       32     30     20
  DEL PEAK 13(6Q24.3) WILD-TYPE    140     90    201
D34V3, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          32                           140
  CLUS_2                          30                            90
  CLUS_3                          20                           201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q24.3) MUTATED       53     16      8      5
  DEL PEAK 13(6Q24.3) WILD-TYPE    172     65    159     35
D34V4, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          53                           172
  CLUS_2                          16                            65
  CLUS_3                           8                           159
  CLUS_4                           5                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q24.3) MUTATED        7     17      8     11
  DEL PEAK 13(6Q24.3) WILD-TYPE     45     45     60     63
D34V5, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          17                            45
  CLUS_3                           8                            60
  CLUS_4                          11                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q24.3) MUTATED        9     25      9
  DEL PEAK 13(6Q24.3) WILD-TYPE     58    106     49
D34V6, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                          25                           106
  CLUS_3                           9                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q24.3) MUTATED       29     26      7     15      4
  DEL PEAK 13(6Q24.3) WILD-TYPE    106     86    101    113     24
D34V7, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          29                           106
  CLUS_2                          26                            86
  CLUS_3                           7                           101
  CLUS_4                          15                           113
  CLUS_5                           4                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q24.3) MUTATED       31     25      7     18
  DEL PEAK 13(6Q24.3) WILD-TYPE    104     88    118    120
D34V8, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          31                           104
  CLUS_2                          25                            88
  CLUS_3                           7                           118
  CLUS_4                          18                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q24.3) MUTATED       36     20     20      5
  DEL PEAK 13(6Q24.3) WILD-TYPE    101     87    163     77
D34V9, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          36                           101
  CLUS_2                          20                            87
  CLUS_3                          20                           163
  CLUS_4                           5                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q24.3) MUTATED       39     22     20
  DEL PEAK 13(6Q24.3) WILD-TYPE    183    162     83
D34V10, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          39                           183
  CLUS_2                          22                           162
  CLUS_3                          20                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q24.3) MUTATED       40     21     18
  DEL PEAK 13(6Q24.3) WILD-TYPE    145    140    141
D34V11, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          40                           145
  CLUS_2                          21                           140
  CLUS_3                          18                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q24.3) MUTATED       27     12     19     21
  DEL PEAK 13(6Q24.3) WILD-TYPE     64    125    169     68
D34V12, multiclass
        clus
vv       DEL PEAK 13(6Q24.3) MUTATED DEL PEAK 13(6Q24.3) WILD-TYPE
  CLUS_1                          27                            64
  CLUS_2                          12                           125
  CLUS_3                          19                           169
  CLUS_4                          21                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE      9     10      8
D35V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE      7      7      7      6
D35V2, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       14      3      6
  DEL PEAK 14(7P22.3) WILD-TYPE    158    117    215
D35V3, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          14                           158
  CLUS_2                           3                           117
  CLUS_3                           6                           215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED       16      2      4      1
  DEL PEAK 14(7P22.3) WILD-TYPE    209     79    163     39
D35V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          16                           209
  CLUS_2                           2                            79
  CLUS_3                           4                           163
  CLUS_4                           1                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        4      1      3      1
  DEL PEAK 14(7P22.3) WILD-TYPE     48     61     65     73
D35V5, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                           1                            61
  CLUS_3                           3                            65
  CLUS_4                           1                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        1      7      1
  DEL PEAK 14(7P22.3) WILD-TYPE     66    124     57
D35V6, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           1                            66
  CLUS_2                           7                           124
  CLUS_3                           1                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        9      5      3      6      0
  DEL PEAK 14(7P22.3) WILD-TYPE    126    107    105    122     28
D35V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                           126
  CLUS_2                           5                           107
  CLUS_3                           3                           105
  CLUS_4                           6                           122
  CLUS_5                           0                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        9      5      4      5
  DEL PEAK 14(7P22.3) WILD-TYPE    126    108    121    133
D35V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                           126
  CLUS_2                           5                           108
  CLUS_3                           4                           121
  CLUS_4                           5                           133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        7      4      6      6
  DEL PEAK 14(7P22.3) WILD-TYPE    130    103    177     76
D35V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           7                           130
  CLUS_2                           4                           103
  CLUS_3                           6                           177
  CLUS_4                           6                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       15      6      2
  DEL PEAK 14(7P22.3) WILD-TYPE    207    178    101
D35V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          15                           207
  CLUS_2                           6                           178
  CLUS_3                           2                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        9      8      5
  DEL PEAK 14(7P22.3) WILD-TYPE    176    153    154
D35V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           9                           176
  CLUS_2                           8                           153
  CLUS_3                           5                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        7      6      7      2
  DEL PEAK 14(7P22.3) WILD-TYPE     84    131    181     87
D35V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           7                            84
  CLUS_2                           6                           131
  CLUS_3                           7                           181
  CLUS_4                           2                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 15(8Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED        0      1      1
  DEL PEAK 15(8Q24.3) WILD-TYPE      9      9      7
D36V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 15(8Q24.3) MUTATED"
clus
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 15(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED        0      1      0      1
  DEL PEAK 15(8Q24.3) WILD-TYPE      7      6      7      5
D36V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 15(8Q24.3) MUTATED"
clus
  DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 15(8Q24.3) WILD-TYPE" "DEL PEAK 15(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 15(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED       15     13      1
  DEL PEAK 15(8Q24.3) WILD-TYPE    157    107    220
D36V3, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          15                           157
  CLUS_2                          13                           107
  CLUS_3                           1                           220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED       17     11      0      1
  DEL PEAK 15(8Q24.3) WILD-TYPE    208     70    167     39
D36V4, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          17                           208
  CLUS_2                          11                            70
  CLUS_3                           0                           167
  CLUS_4                           1                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED        3      5      4      4
  DEL PEAK 15(8Q24.3) WILD-TYPE     49     57     64     70
D36V5, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                           3                            49
  CLUS_2                           5                            57
  CLUS_3                           4                            64
  CLUS_4                           4                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED        2     10      4
  DEL PEAK 15(8Q24.3) WILD-TYPE     65    121     54
D36V6, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                          10                           121
  CLUS_3                           4                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8Q24.3) MUTATED       12     11      0      6      0
  DEL PEAK 15(8Q24.3) WILD-TYPE    123    101    108    122     28
D36V7, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          12                           123
  CLUS_2                          11                           101
  CLUS_3                           0                           108
  CLUS_4                           6                           122
  CLUS_5                           0                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED       10     12      0      7
  DEL PEAK 15(8Q24.3) WILD-TYPE    125    101    125    131
D36V8, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          10                           125
  CLUS_2                          12                           101
  CLUS_3                           0                           125
  CLUS_4                           7                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED       13      9      7      0
  DEL PEAK 15(8Q24.3) WILD-TYPE    124     98    176     82
D36V9, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          13                           124
  CLUS_2                           9                            98
  CLUS_3                           7                           176
  CLUS_4                           0                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED       11      5     13
  DEL PEAK 15(8Q24.3) WILD-TYPE    211    179     90
D36V10, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          11                           211
  CLUS_2                           5                           179
  CLUS_3                          13                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8Q24.3) MUTATED       15      7      6
  DEL PEAK 15(8Q24.3) WILD-TYPE    170    154    153
D36V11, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                          15                           170
  CLUS_2                           7                           154
  CLUS_3                           6                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8Q24.3) MUTATED        8      6      5      9
  DEL PEAK 15(8Q24.3) WILD-TYPE     83    131    183     80
D36V12, multiclass
        clus
vv       DEL PEAK 15(8Q24.3) MUTATED DEL PEAK 15(8Q24.3) WILD-TYPE
  CLUS_1                           8                            83
  CLUS_2                           6                           131
  CLUS_3                           5                           183
  CLUS_4                           9                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 16(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED        1      2      3
  DEL PEAK 16(9P23) WILD-TYPE      8      8      5
D37V1, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED        1      3      1      1
  DEL PEAK 16(9P23) WILD-TYPE      6      4      6      5
D37V2, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         3                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       55     57     38
  DEL PEAK 16(9P23) WILD-TYPE    117     63    183
D37V3, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        55                         117
  CLUS_2                        57                          63
  CLUS_3                        38                         183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       79     35     28      8
  DEL PEAK 16(9P23) WILD-TYPE    146     46    139     32
D37V4, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        79                         146
  CLUS_2                        35                          46
  CLUS_3                        28                         139
  CLUS_4                         8                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       11     27     22     18
  DEL PEAK 16(9P23) WILD-TYPE     41     35     46     56
D37V5, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        11                          41
  CLUS_2                        27                          35
  CLUS_3                        22                          46
  CLUS_4                        18                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       10     50     18
  DEL PEAK 16(9P23) WILD-TYPE     57     81     40
D37V6, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        10                          57
  CLUS_2                        50                          81
  CLUS_3                        18                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P23) MUTATED       35     44     21     43      7
  DEL PEAK 16(9P23) WILD-TYPE    100     68     87     85     21
D37V7, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        35                         100
  CLUS_2                        44                          68
  CLUS_3                        21                          87
  CLUS_4                        43                          85
  CLUS_5                         7                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       39     43     25     43
  DEL PEAK 16(9P23) WILD-TYPE     96     70    100     95
D37V8, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        39                          96
  CLUS_2                        43                          70
  CLUS_3                        25                         100
  CLUS_4                        43                          95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       37     32     56     24
  DEL PEAK 16(9P23) WILD-TYPE    100     75    127     58
D37V9, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        37                         100
  CLUS_2                        32                          75
  CLUS_3                        56                         127
  CLUS_4                        24                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       55     58     36
  DEL PEAK 16(9P23) WILD-TYPE    167    126     67
D37V10, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        55                         167
  CLUS_2                        58                         126
  CLUS_3                        36                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P23) MUTATED       59     41     48
  DEL PEAK 16(9P23) WILD-TYPE    126    120    111
D37V11, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        59                         126
  CLUS_2                        41                         120
  CLUS_3                        48                         111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P23) MUTATED       28     27     55     38
  DEL PEAK 16(9P23) WILD-TYPE     63    110    133     51
D37V12, multiclass
        clus
vv       DEL PEAK 16(9P23) MUTATED DEL PEAK 16(9P23) WILD-TYPE
  CLUS_1                        28                          63
  CLUS_2                        27                         110
  CLUS_3                        55                         133
  CLUS_4                        38                          51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 17(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED        1      4      3
  DEL PEAK 17(9P21.3) WILD-TYPE      8      6      5
D38V1, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             6
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED        1      5      1      1
  DEL PEAK 17(9P21.3) WILD-TYPE      6      2      6      5
D38V2, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           5                             2
  CLUS_3                           1                             6
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       63     77     36
  DEL PEAK 17(9P21.3) WILD-TYPE    109     43    185
D38V3, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          63                           109
  CLUS_2                          77                            43
  CLUS_3                          36                           185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       82     59     27      8
  DEL PEAK 17(9P21.3) WILD-TYPE    143     22    140     32
D38V4, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          82                           143
  CLUS_2                          59                            22
  CLUS_3                          27                           140
  CLUS_4                           8                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       12     38     26     18
  DEL PEAK 17(9P21.3) WILD-TYPE     40     24     42     56
D38V5, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          12                            40
  CLUS_2                          38                            24
  CLUS_3                          26                            42
  CLUS_4                          18                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       11     65     18
  DEL PEAK 17(9P21.3) WILD-TYPE     56     66     40
D38V6, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                          65                            66
  CLUS_3                          18                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P21.3) MUTATED       40     66     19     44      7
  DEL PEAK 17(9P21.3) WILD-TYPE     95     46     89     84     21
D38V7, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          40                            95
  CLUS_2                          66                            46
  CLUS_3                          19                            89
  CLUS_4                          44                            84
  CLUS_5                           7                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       44     65     23     44
  DEL PEAK 17(9P21.3) WILD-TYPE     91     48    102     94
D38V8, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          44                            91
  CLUS_2                          65                            48
  CLUS_3                          23                           102
  CLUS_4                          44                            94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       50     44     56     25
  DEL PEAK 17(9P21.3) WILD-TYPE     87     63    127     57
D38V9, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          50                            87
  CLUS_2                          44                            63
  CLUS_3                          56                           127
  CLUS_4                          25                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       59     56     60
  DEL PEAK 17(9P21.3) WILD-TYPE    163    128     43
D38V10, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          59                           163
  CLUS_2                          56                           128
  CLUS_3                          60                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P21.3) MUTATED       82     41     51
  DEL PEAK 17(9P21.3) WILD-TYPE    103    120    108
D38V11, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          82                           103
  CLUS_2                          41                           120
  CLUS_3                          51                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P21.3) MUTATED       31     28     54     61
  DEL PEAK 17(9P21.3) WILD-TYPE     60    109    134     28
D38V12, multiclass
        clus
vv       DEL PEAK 17(9P21.3) MUTATED DEL PEAK 17(9P21.3) WILD-TYPE
  CLUS_1                          31                            60
  CLUS_2                          28                           109
  CLUS_3                          54                           134
  CLUS_4                          61                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 18(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED        0      1      3
  DEL PEAK 18(10Q26.3) WILD-TYPE      9      9      5
D39V1, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                              9
  CLUS_3                            3                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED        1      2      0      1
  DEL PEAK 18(10Q26.3) WILD-TYPE      6      5      7      5
D39V2, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       53     85     13
  DEL PEAK 18(10Q26.3) WILD-TYPE    119     35    208
D39V3, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           53                            119
  CLUS_2                           85                             35
  CLUS_3                           13                            208
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       64     72      8      7
  DEL PEAK 18(10Q26.3) WILD-TYPE    161      9    159     33
D39V4, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           64                            161
  CLUS_2                           72                              9
  CLUS_3                            8                            159
  CLUS_4                            7                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       13     35     14     11
  DEL PEAK 18(10Q26.3) WILD-TYPE     39     27     54     63
D39V5, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           35                             27
  CLUS_3                           14                             54
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       11     52     10
  DEL PEAK 18(10Q26.3) WILD-TYPE     56     79     48
D39V6, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                           52                             79
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q26.3) MUTATED       32     81      4     26      7
  DEL PEAK 18(10Q26.3) WILD-TYPE    103     31    104    102     21
D39V7, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           32                            103
  CLUS_2                           81                             31
  CLUS_3                            4                            104
  CLUS_4                           26                            102
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       34     81      8     27
  DEL PEAK 18(10Q26.3) WILD-TYPE    101     32    117    111
D39V8, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           34                            101
  CLUS_2                           81                             32
  CLUS_3                            8                            117
  CLUS_4                           27                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       55     46     39     11
  DEL PEAK 18(10Q26.3) WILD-TYPE     82     61    144     71
D39V9, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           55                             82
  CLUS_2                           46                             61
  CLUS_3                           39                            144
  CLUS_4                           11                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       49     28     74
  DEL PEAK 18(10Q26.3) WILD-TYPE    173    156     29
D39V10, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           49                            173
  CLUS_2                           28                            156
  CLUS_3                           74                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q26.3) MUTATED       94     22     35
  DEL PEAK 18(10Q26.3) WILD-TYPE     91    139    124
D39V11, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           94                             91
  CLUS_2                           22                            139
  CLUS_3                           35                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10Q26.3) MUTATED       28     18     33     72
  DEL PEAK 18(10Q26.3) WILD-TYPE     63    119    155     17
D39V12, multiclass
        clus
vv       DEL PEAK 18(10Q26.3) MUTATED DEL PEAK 18(10Q26.3) WILD-TYPE
  CLUS_1                           28                             63
  CLUS_2                           18                            119
  CLUS_3                           33                            155
  CLUS_4                           72                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 19(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED        3      3      1
  DEL PEAK 19(11P15.5) WILD-TYPE      6      7      7
D40V1, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED        1      6      0      0
  DEL PEAK 19(11P15.5) WILD-TYPE      6      1      7      6
D40V2, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            6                              1
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       74     20     10
  DEL PEAK 19(11P15.5) WILD-TYPE     98    100    211
D40V3, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           74                             98
  CLUS_2                           20                            100
  CLUS_3                           10                            211
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       85     14      0      5
  DEL PEAK 19(11P15.5) WILD-TYPE    140     67    167     35
D40V4, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           85                            140
  CLUS_2                           14                             67
  CLUS_3                            0                            167
  CLUS_4                            5                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       13     18      9     15
  DEL PEAK 19(11P15.5) WILD-TYPE     39     44     59     59
D40V5, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           18                             44
  CLUS_3                            9                             59
  CLUS_4                           15                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       13     27     15
  DEL PEAK 19(11P15.5) WILD-TYPE     54    104     43
D40V6, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           13                             54
  CLUS_2                           27                            104
  CLUS_3                           15                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P15.5) MUTATED       39     35      0     23      6
  DEL PEAK 19(11P15.5) WILD-TYPE     96     77    108    105     22
D40V7, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           39                             96
  CLUS_2                           35                             77
  CLUS_3                            0                            108
  CLUS_4                           23                            105
  CLUS_5                            6                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       38     38      0     27
  DEL PEAK 19(11P15.5) WILD-TYPE     97     75    125    111
D40V8, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           38                             97
  CLUS_2                           38                             75
  CLUS_3                            0                            125
  CLUS_4                           27                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       23     40     33      8
  DEL PEAK 19(11P15.5) WILD-TYPE    114     67    150     74
D40V9, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           23                            114
  CLUS_2                           40                             67
  CLUS_3                           33                            150
  CLUS_4                            8                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       42     29     33
  DEL PEAK 19(11P15.5) WILD-TYPE    180    155     70
D40V10, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           42                            180
  CLUS_2                           29                            155
  CLUS_3                           33                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P15.5) MUTATED       37     33     33
  DEL PEAK 19(11P15.5) WILD-TYPE    148    128    126
D40V11, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           37                            148
  CLUS_2                           33                            128
  CLUS_3                           33                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11P15.5) MUTATED       20     27     36     20
  DEL PEAK 19(11P15.5) WILD-TYPE     71    110    152     69
D40V12, multiclass
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  CLUS_1                           20                             71
  CLUS_2                           27                            110
  CLUS_3                           36                            152
  CLUS_4                           20                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 20(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED        2      2      1
  DEL PEAK 20(11P15.1) WILD-TYPE      7      8      7
D41V1, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED        1      4      0      0
  DEL PEAK 20(11P15.1) WILD-TYPE      6      3      7      6
D41V2, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED       52     15      5
  DEL PEAK 20(11P15.1) WILD-TYPE    120    105    216
D41V3, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           52                            120
  CLUS_2                           15                            105
  CLUS_3                            5                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       52     14      1      5
  DEL PEAK 20(11P15.1) WILD-TYPE    173     67    166     35
D41V4, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           52                            173
  CLUS_2                           14                             67
  CLUS_3                            1                            166
  CLUS_4                            5                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       10     17      5      9
  DEL PEAK 20(11P15.1) WILD-TYPE     42     45     63     65
D41V5, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           10                             42
  CLUS_2                           17                             45
  CLUS_3                            5                             63
  CLUS_4                            9                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED        9     23      9
  DEL PEAK 20(11P15.1) WILD-TYPE     58    108     49
D41V6, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                           23                            108
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.1) MUTATED       17     35      1     12      6
  DEL PEAK 20(11P15.1) WILD-TYPE    118     77    107    116     22
D41V7, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           17                            118
  CLUS_2                           35                             77
  CLUS_3                            1                            107
  CLUS_4                           12                            116
  CLUS_5                            6                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       20     38      1     12
  DEL PEAK 20(11P15.1) WILD-TYPE    115     75    124    126
D41V8, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           20                            115
  CLUS_2                           38                             75
  CLUS_3                            1                            124
  CLUS_4                           12                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       16     32     19      5
  DEL PEAK 20(11P15.1) WILD-TYPE    121     75    164     77
D41V9, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           16                            121
  CLUS_2                           32                             75
  CLUS_3                           19                            164
  CLUS_4                            5                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED       27     16     29
  DEL PEAK 20(11P15.1) WILD-TYPE    195    168     74
D41V10, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           27                            195
  CLUS_2                           16                            168
  CLUS_3                           29                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.1) MUTATED       28     22     21
  DEL PEAK 20(11P15.1) WILD-TYPE    157    139    138
D41V11, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           28                            157
  CLUS_2                           22                            139
  CLUS_3                           21                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.1) MUTATED       13     18     19     21
  DEL PEAK 20(11P15.1) WILD-TYPE     78    119    169     68
D41V12, multiclass
        clus
vv       DEL PEAK 20(11P15.1) MUTATED DEL PEAK 20(11P15.1) WILD-TYPE
  CLUS_1                           13                             78
  CLUS_2                           18                            119
  CLUS_3                           19                            169
  CLUS_4                           21                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 21(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED        2      0      0
  DEL PEAK 21(12P13.1) WILD-TYPE      7     10      8
D42V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 21(12P13.1) MUTATED"
clus
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        1      1      0      0
  DEL PEAK 21(12P13.1) WILD-TYPE      6      6      7      6
D42V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 21(12P13.1) MUTATED"
clus
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 21(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       23      8      7
  DEL PEAK 21(12P13.1) WILD-TYPE    149    112    214
D42V3, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           23                            149
  CLUS_2                            8                            112
  CLUS_3                            7                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED       26      7      5      0
  DEL PEAK 21(12P13.1) WILD-TYPE    199     74    162     40
D42V4, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           26                            199
  CLUS_2                            7                             74
  CLUS_3                            5                            162
  CLUS_4                            0                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        6      7      2      4
  DEL PEAK 21(12P13.1) WILD-TYPE     46     55     66     70
D42V5, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                            7                             55
  CLUS_3                            2                             66
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED        5     10      4
  DEL PEAK 21(12P13.1) WILD-TYPE     62    121     54
D42V6, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           10                            121
  CLUS_3                            4                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12P13.1) MUTATED       15     13      2      8      0
  DEL PEAK 21(12P13.1) WILD-TYPE    120     99    106    120     28
D42V7, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                           13                             99
  CLUS_3                            2                            106
  CLUS_4                            8                            120
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED       15     13      4      6
  DEL PEAK 21(12P13.1) WILD-TYPE    120    100    121    132
D42V8, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                           13                            100
  CLUS_3                            4                            121
  CLUS_4                            6                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        7     15     11      5
  DEL PEAK 21(12P13.1) WILD-TYPE    130     92    172     77
D42V9, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            7                            130
  CLUS_2                           15                             92
  CLUS_3                           11                            172
  CLUS_4                            5                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       13     11     14
  DEL PEAK 21(12P13.1) WILD-TYPE    209    173     89
D42V10, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           13                            209
  CLUS_2                           11                            173
  CLUS_3                           14                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       14     13     11
  DEL PEAK 21(12P13.1) WILD-TYPE    171    148    148
D42V11, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           14                            171
  CLUS_2                           13                            148
  CLUS_3                           11                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(12P13.1) MUTATED        9      7     12     10
  DEL PEAK 21(12P13.1) WILD-TYPE     82    130    176     79
D42V12, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            9                             82
  CLUS_2                            7                            130
  CLUS_3                           12                            176
  CLUS_4                           10                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 22(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED        1      2      1
  DEL PEAK 22(12Q12) WILD-TYPE      8      8      7
D43V1, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          2                            8
  CLUS_3                          1                            7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED        1      3      0      0
  DEL PEAK 22(12Q12) WILD-TYPE      6      4      7      6
D43V2, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED       53      7     12
  DEL PEAK 22(12Q12) WILD-TYPE    119    113    209
D43V3, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         53                          119
  CLUS_2                          7                          113
  CLUS_3                         12                          209
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       57      5      8      2
  DEL PEAK 22(12Q12) WILD-TYPE    168     76    159     38
D43V4, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         57                          168
  CLUS_2                          5                           76
  CLUS_3                          8                          159
  CLUS_4                          2                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED        6      9      9     12
  DEL PEAK 22(12Q12) WILD-TYPE     46     53     59     62
D43V5, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          6                           46
  CLUS_2                          9                           53
  CLUS_3                          9                           59
  CLUS_4                         12                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED        8     16     12
  DEL PEAK 22(12Q12) WILD-TYPE     59    115     46
D43V6, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                         16                          115
  CLUS_3                         12                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q12) MUTATED       23     22      5     17      5
  DEL PEAK 22(12Q12) WILD-TYPE    112     90    103    111     23
D43V7, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         23                          112
  CLUS_2                         22                           90
  CLUS_3                          5                          103
  CLUS_4                         17                          111
  CLUS_5                          5                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       25     22      7     18
  DEL PEAK 22(12Q12) WILD-TYPE    110     91    118    120
D43V8, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         25                          110
  CLUS_2                         22                           91
  CLUS_3                          7                          118
  CLUS_4                         18                          120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       14     26     23      9
  DEL PEAK 22(12Q12) WILD-TYPE    123     81    160     73
D43V9, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         14                          123
  CLUS_2                         26                           81
  CLUS_3                         23                          160
  CLUS_4                          9                           73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED       31     23     18
  DEL PEAK 22(12Q12) WILD-TYPE    191    161     85
D43V10, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         31                          191
  CLUS_2                         23                          161
  CLUS_3                         18                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q12) MUTATED       25     23     24
  DEL PEAK 22(12Q12) WILD-TYPE    160    138    135
D43V11, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         25                          160
  CLUS_2                         23                          138
  CLUS_3                         24                          135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q12) MUTATED       13     20     28     11
  DEL PEAK 22(12Q12) WILD-TYPE     78    117    160     78
D43V12, multiclass
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  CLUS_1                         13                           78
  CLUS_2                         20                          117
  CLUS_3                         28                          160
  CLUS_4                         11                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 23(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED        5      3      1
  DEL PEAK 23(13Q14.2) WILD-TYPE      4      7      7
D44V1, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED        2      7      0      0
  DEL PEAK 23(13Q14.2) WILD-TYPE      5      0      7      6
D44V2, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            7                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       73     36     33
  DEL PEAK 23(13Q14.2) WILD-TYPE     99     84    188
D44V3, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           73                             99
  CLUS_2                           36                             84
  CLUS_3                           33                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       80     28     27      7
  DEL PEAK 23(13Q14.2) WILD-TYPE    145     53    140     33
D44V4, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           80                            145
  CLUS_2                           28                             53
  CLUS_3                           27                            140
  CLUS_4                            7                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED        9     26     18     20
  DEL PEAK 23(13Q14.2) WILD-TYPE     43     36     50     54
D44V5, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           26                             36
  CLUS_3                           18                             50
  CLUS_4                           20                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       16     39     18
  DEL PEAK 23(13Q14.2) WILD-TYPE     51     92     40
D44V6, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           39                             92
  CLUS_3                           18                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED       40     47     16     32      7
  DEL PEAK 23(13Q14.2) WILD-TYPE     95     65     92     96     21
D44V7, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           40                             95
  CLUS_2                           47                             65
  CLUS_3                           16                             92
  CLUS_4                           32                             96
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       43     47     19     33
  DEL PEAK 23(13Q14.2) WILD-TYPE     92     66    106    105
D44V8, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           43                             92
  CLUS_2                           47                             66
  CLUS_3                           19                            106
  CLUS_4                           33                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       38     42     40     21
  DEL PEAK 23(13Q14.2) WILD-TYPE     99     65    143     61
D44V9, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           38                             99
  CLUS_2                           42                             65
  CLUS_3                           40                            143
  CLUS_4                           21                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       66     37     38
  DEL PEAK 23(13Q14.2) WILD-TYPE    156    147     65
D44V10, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           66                            156
  CLUS_2                           37                            147
  CLUS_3                           38                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       53     49     39
  DEL PEAK 23(13Q14.2) WILD-TYPE    132    112    120
D44V11, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           53                            132
  CLUS_2                           49                            112
  CLUS_3                           39                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       23     41     47     30
  DEL PEAK 23(13Q14.2) WILD-TYPE     68     96    141     59
D44V12, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           23                             68
  CLUS_2                           41                             96
  CLUS_3                           47                            141
  CLUS_4                           30                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 24(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED        5      3      1
  DEL PEAK 24(13Q14.2) WILD-TYPE      4      7      7
D45V1, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED        2      7      0      0
  DEL PEAK 24(13Q14.2) WILD-TYPE      5      0      7      6
D45V2, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            7                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       74     37     33
  DEL PEAK 24(13Q14.2) WILD-TYPE     98     83    188
D45V3, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           74                             98
  CLUS_2                           37                             83
  CLUS_3                           33                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED       81     29     27      7
  DEL PEAK 24(13Q14.2) WILD-TYPE    144     52    140     33
D45V4, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           81                            144
  CLUS_2                           29                             52
  CLUS_3                           27                            140
  CLUS_4                            7                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED       10     27     18     20
  DEL PEAK 24(13Q14.2) WILD-TYPE     42     35     50     54
D45V5, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           10                             42
  CLUS_2                           27                             35
  CLUS_3                           18                             50
  CLUS_4                           20                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       17     40     18
  DEL PEAK 24(13Q14.2) WILD-TYPE     50     91     40
D45V6, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           17                             50
  CLUS_2                           40                             91
  CLUS_3                           18                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q14.2) MUTATED       41     48     16     32      7
  DEL PEAK 24(13Q14.2) WILD-TYPE     94     64     92     96     21
D45V7, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           41                             94
  CLUS_2                           48                             64
  CLUS_3                           16                             92
  CLUS_4                           32                             96
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED       44     48     19     33
  DEL PEAK 24(13Q14.2) WILD-TYPE     91     65    106    105
D45V8, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           44                             91
  CLUS_2                           48                             65
  CLUS_3                           19                            106
  CLUS_4                           33                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED       40     42     40     21
  DEL PEAK 24(13Q14.2) WILD-TYPE     97     65    143     61
D45V9, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           40                             97
  CLUS_2                           42                             65
  CLUS_3                           40                            143
  CLUS_4                           21                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       67     37     39
  DEL PEAK 24(13Q14.2) WILD-TYPE    155    147     64
D45V10, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           67                            155
  CLUS_2                           37                            147
  CLUS_3                           39                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       55     49     39
  DEL PEAK 24(13Q14.2) WILD-TYPE    130    112    120
D45V11, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           55                            130
  CLUS_2                           49                            112
  CLUS_3                           39                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED       24     41     47     31
  DEL PEAK 24(13Q14.2) WILD-TYPE     67     96    141     58
D45V12, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           24                             67
  CLUS_2                           41                             96
  CLUS_3                           47                            141
  CLUS_4                           31                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 25(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED        2      2      0
  DEL PEAK 25(13Q34) WILD-TYPE      7      8      8
D46V1, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          2                            8
  CLUS_3                          0                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED        1      3      0      0
  DEL PEAK 25(13Q34) WILD-TYPE      6      4      7      6
D46V2, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       52     30     28
  DEL PEAK 25(13Q34) WILD-TYPE    120     90    193
D46V3, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         52                          120
  CLUS_2                         30                           90
  CLUS_3                         28                          193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       51     27     26      6
  DEL PEAK 25(13Q34) WILD-TYPE    174     54    141     34
D46V4, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         51                          174
  CLUS_2                         27                           54
  CLUS_3                         26                          141
  CLUS_4                          6                           34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED        7     20     12     15
  DEL PEAK 25(13Q34) WILD-TYPE     45     42     56     59
D46V5, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                          7                           45
  CLUS_2                         20                           42
  CLUS_3                         12                           56
  CLUS_4                         15                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       12     29     13
  DEL PEAK 25(13Q34) WILD-TYPE     55    102     45
D46V6, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                         29                          102
  CLUS_3                         13                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(13Q34) MUTATED       28     38     16     23      5
  DEL PEAK 25(13Q34) WILD-TYPE    107     74     92    105     23
D46V7, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         28                          107
  CLUS_2                         38                           74
  CLUS_3                         16                           92
  CLUS_4                         23                          105
  CLUS_5                          5                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       31     38     19     22
  DEL PEAK 25(13Q34) WILD-TYPE    104     75    106    116
D46V8, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         31                          104
  CLUS_2                         38                           75
  CLUS_3                         19                          106
  CLUS_4                         22                          116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       28     34     30     17
  DEL PEAK 25(13Q34) WILD-TYPE    109     73    153     65
D46V9, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         28                          109
  CLUS_2                         34                           73
  CLUS_3                         30                          153
  CLUS_4                         17                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       49     27     33
  DEL PEAK 25(13Q34) WILD-TYPE    173    157     70
D46V10, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         49                          173
  CLUS_2                         27                          157
  CLUS_3                         33                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(13Q34) MUTATED       45     36     28
  DEL PEAK 25(13Q34) WILD-TYPE    140    125    131
D46V11, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         45                          140
  CLUS_2                         36                          125
  CLUS_3                         28                          131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(13Q34) MUTATED       16     28     38     27
  DEL PEAK 25(13Q34) WILD-TYPE     75    109    150     62
D46V12, multiclass
        clus
vv       DEL PEAK 25(13Q34) MUTATED DEL PEAK 25(13Q34) WILD-TYPE
  CLUS_1                         16                           75
  CLUS_2                         28                          109
  CLUS_3                         38                          150
  CLUS_4                         27                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 26(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q24.3) MUTATED        4      2      1
  DEL PEAK 26(14Q24.3) WILD-TYPE      5      8      7
D47V1, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q24.3) MUTATED        2      4      0      1
  DEL PEAK 26(14Q24.3) WILD-TYPE      5      3      7      5
D47V2, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q24.3) MUTATED       36     42     43
  DEL PEAK 26(14Q24.3) WILD-TYPE    136     78    178
D47V3, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           36                            136
  CLUS_2                           42                             78
  CLUS_3                           43                            178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q24.3) MUTATED       53     30     32      6
  DEL PEAK 26(14Q24.3) WILD-TYPE    172     51    135     34
D47V4, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           53                            172
  CLUS_2                           30                             51
  CLUS_3                           32                            135
  CLUS_4                            6                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q24.3) MUTATED        6     24     18     11
  DEL PEAK 26(14Q24.3) WILD-TYPE     46     38     50     63
D47V5, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                           24                             38
  CLUS_3                           18                             50
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q24.3) MUTATED       10     39     10
  DEL PEAK 26(14Q24.3) WILD-TYPE     57     92     48
D47V6, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           39                             92
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(14Q24.3) MUTATED       25     44     23     21      7
  DEL PEAK 26(14Q24.3) WILD-TYPE    110     68     85    107     21
D47V7, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           25                            110
  CLUS_2                           44                             68
  CLUS_3                           23                             85
  CLUS_4                           21                            107
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q24.3) MUTATED       32     44     24     20
  DEL PEAK 26(14Q24.3) WILD-TYPE    103     69    101    118
D47V8, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           32                            103
  CLUS_2                           44                             69
  CLUS_3                           24                            101
  CLUS_4                           20                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q24.3) MUTATED       51     21     32     16
  DEL PEAK 26(14Q24.3) WILD-TYPE     86     86    151     66
D47V9, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           51                             86
  CLUS_2                           21                             86
  CLUS_3                           32                            151
  CLUS_4                           16                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q24.3) MUTATED       54     31     35
  DEL PEAK 26(14Q24.3) WILD-TYPE    168    153     68
D47V10, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           54                            168
  CLUS_2                           31                            153
  CLUS_3                           35                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(14Q24.3) MUTATED       58     38     24
  DEL PEAK 26(14Q24.3) WILD-TYPE    127    123    135
D47V11, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           58                            127
  CLUS_2                           38                            123
  CLUS_3                           24                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(14Q24.3) MUTATED       26     33     29     32
  DEL PEAK 26(14Q24.3) WILD-TYPE     65    104    159     57
D47V12, multiclass
        clus
vv       DEL PEAK 26(14Q24.3) MUTATED DEL PEAK 26(14Q24.3) WILD-TYPE
  CLUS_1                           26                             65
  CLUS_2                           33                            104
  CLUS_3                           29                            159
  CLUS_4                           32                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 27(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q23) MUTATED        2      3      0
  DEL PEAK 27(18Q23) WILD-TYPE      7      7      8
D48V1, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          3                            7
  CLUS_3                          0                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q23) MUTATED        1      3      1      0
  DEL PEAK 27(18Q23) WILD-TYPE      6      4      6      6
D48V2, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          1                            6
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q23) MUTATED       27     14     37
  DEL PEAK 27(18Q23) WILD-TYPE    145    106    184
D48V3, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         27                          145
  CLUS_2                         14                          106
  CLUS_3                         37                          184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q23) MUTATED       31     13     34      0
  DEL PEAK 27(18Q23) WILD-TYPE    194     68    133     40
D48V4, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         31                          194
  CLUS_2                         13                           68
  CLUS_3                         34                          133
  CLUS_4                          0                           40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q23) MUTATED        6     13     13     10
  DEL PEAK 27(18Q23) WILD-TYPE     46     49     55     64
D48V5, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                          6                           46
  CLUS_2                         13                           49
  CLUS_3                         13                           55
  CLUS_4                         10                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q23) MUTATED        6     28      8
  DEL PEAK 27(18Q23) WILD-TYPE     61    103     50
D48V6, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                         28                          103
  CLUS_3                          8                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(18Q23) MUTATED       19     17     23     16      3
  DEL PEAK 27(18Q23) WILD-TYPE    116     95     85    112     25
D48V7, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         19                          116
  CLUS_2                         17                           95
  CLUS_3                         23                           85
  CLUS_4                         16                          112
  CLUS_5                          3                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q23) MUTATED       19     18     27     14
  DEL PEAK 27(18Q23) WILD-TYPE    116     95     98    124
D48V8, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         19                          116
  CLUS_2                         18                           95
  CLUS_3                         27                           98
  CLUS_4                         14                          124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q23) MUTATED       23     15     23     17
  DEL PEAK 27(18Q23) WILD-TYPE    114     92    160     65
D48V9, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         23                          114
  CLUS_2                         15                           92
  CLUS_3                         23                          160
  CLUS_4                         17                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q23) MUTATED       38     25     15
  DEL PEAK 27(18Q23) WILD-TYPE    184    159     88
D48V10, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         38                          184
  CLUS_2                         25                          159
  CLUS_3                         15                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q23) MUTATED       30     27     20
  DEL PEAK 27(18Q23) WILD-TYPE    155    134    139
D48V11, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         30                          155
  CLUS_2                         27                          134
  CLUS_3                         20                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q23) MUTATED       14     23     26     14
  DEL PEAK 27(18Q23) WILD-TYPE     77    114    162     75
D48V12, multiclass
        clus
vv       DEL PEAK 27(18Q23) MUTATED DEL PEAK 27(18Q23) WILD-TYPE
  CLUS_1                         14                           77
  CLUS_2                         23                          114
  CLUS_3                         26                          162
  CLUS_4                         14                           75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 28(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.41) MUTATED        6     10      4
  DEL PEAK 28(19Q13.41) WILD-TYPE      3      0      4
D49V1, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                             6                               3
  CLUS_2                            10                               0
  CLUS_3                             4                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.41) MUTATED        3      7      7      3
  DEL PEAK 28(19Q13.41) WILD-TYPE      4      0      0      3
D49V2, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                             3                               4
  CLUS_2                             7                               0
  CLUS_3                             7                               0
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.41) MUTATED       40     35    192
  DEL PEAK 28(19Q13.41) WILD-TYPE    132     85     29
D49V3, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            40                             132
  CLUS_2                            35                              85
  CLUS_3                           192                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.41) MUTATED       78     12    167     10
  DEL PEAK 28(19Q13.41) WILD-TYPE    147     69      0     30
D49V4, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            78                             147
  CLUS_2                            12                              69
  CLUS_3                           167                               0
  CLUS_4                            10                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.41) MUTATED       16     28     36     49
  DEL PEAK 28(19Q13.41) WILD-TYPE     36     34     32     25
D49V5, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            16                              36
  CLUS_2                            28                              34
  CLUS_3                            36                              32
  CLUS_4                            49                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.41) MUTATED       34     60     35
  DEL PEAK 28(19Q13.41) WILD-TYPE     33     71     23
D49V6, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            34                              33
  CLUS_2                            60                              71
  CLUS_3                            35                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(19Q13.41) MUTATED       40     33    108     73     12
  DEL PEAK 28(19Q13.41) WILD-TYPE     95     79      0     55     16
D49V7, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            40                              95
  CLUS_2                            33                              79
  CLUS_3                           108                               0
  CLUS_4                            73                              55
  CLUS_5                            12                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.41) MUTATED       39     31    124     72
  DEL PEAK 28(19Q13.41) WILD-TYPE     96     82      1     66
D49V8, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            39                              96
  CLUS_2                            31                              82
  CLUS_3                           124                               1
  CLUS_4                            72                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.41) MUTATED       50     36    107     74
  DEL PEAK 28(19Q13.41) WILD-TYPE     87     71     76      8
D49V9, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            50                              87
  CLUS_2                            36                              71
  CLUS_3                           107                              76
  CLUS_4                            74                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.41) MUTATED      129    118     20
  DEL PEAK 28(19Q13.41) WILD-TYPE     93     66     83
D49V10, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                           129                              93
  CLUS_2                           118                              66
  CLUS_3                            20                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19Q13.41) MUTATED       61    110     95
  DEL PEAK 28(19Q13.41) WILD-TYPE    124     51     64
D49V11, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            61                             124
  CLUS_2                           110                              51
  CLUS_3                            95                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19Q13.41) MUTATED       32    105    113     16
  DEL PEAK 28(19Q13.41) WILD-TYPE     59     32     75     73
D49V12, multiclass
        clus
vv       DEL PEAK 28(19Q13.41) MUTATED DEL PEAK 28(19Q13.41) WILD-TYPE
  CLUS_1                            32                              59
  CLUS_2                           105                              32
  CLUS_3                           113                              75
  CLUS_4                            16                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 29(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.42) MUTATED        7     10      4
  DEL PEAK 29(19Q13.42) WILD-TYPE      2      0      4
D50V1, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                            10                               0
  CLUS_3                             4                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.42) MUTATED        4      7      7      3
  DEL PEAK 29(19Q13.42) WILD-TYPE      3      0      0      3
D50V2, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                             4                               3
  CLUS_2                             7                               0
  CLUS_3                             7                               0
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.42) MUTATED       42     38    198
  DEL PEAK 29(19Q13.42) WILD-TYPE    130     82     23
D50V3, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            42                             130
  CLUS_2                            38                              82
  CLUS_3                           198                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.42) MUTATED       88     13    167     10
  DEL PEAK 29(19Q13.42) WILD-TYPE    137     68      0     30
D50V4, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            88                             137
  CLUS_2                            13                              68
  CLUS_3                           167                               0
  CLUS_4                            10                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.42) MUTATED       17     29     40     48
  DEL PEAK 29(19Q13.42) WILD-TYPE     35     33     28     26
D50V5, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            17                              35
  CLUS_2                            29                              33
  CLUS_3                            40                              28
  CLUS_4                            48                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.42) MUTATED       34     66     34
  DEL PEAK 29(19Q13.42) WILD-TYPE     33     65     24
D50V6, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            34                              33
  CLUS_2                            66                              65
  CLUS_3                            34                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(19Q13.42) MUTATED       49     35    108     73     12
  DEL PEAK 29(19Q13.42) WILD-TYPE     86     77      0     55     16
D50V7, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            49                              86
  CLUS_2                            35                              77
  CLUS_3                           108                               0
  CLUS_4                            73                              55
  CLUS_5                            12                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.42) MUTATED       46     33    124     74
  DEL PEAK 29(19Q13.42) WILD-TYPE     89     80      1     64
D50V8, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            46                              89
  CLUS_2                            33                              80
  CLUS_3                           124                               1
  CLUS_4                            74                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.42) MUTATED       56     40    106     76
  DEL PEAK 29(19Q13.42) WILD-TYPE     81     67     77      6
D50V9, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            56                              81
  CLUS_2                            40                              67
  CLUS_3                           106                              77
  CLUS_4                            76                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.42) MUTATED      137    119     22
  DEL PEAK 29(19Q13.42) WILD-TYPE     85     65     81
D50V10, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                           137                              85
  CLUS_2                           119                              65
  CLUS_3                            22                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.42) MUTATED       69    113     95
  DEL PEAK 29(19Q13.42) WILD-TYPE    116     48     64
D50V11, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            69                             116
  CLUS_2                           113                              48
  CLUS_3                            95                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.42) MUTATED       36    109    115     17
  DEL PEAK 29(19Q13.42) WILD-TYPE     55     28     73     72
D50V12, multiclass
        clus
vv       DEL PEAK 29(19Q13.42) MUTATED DEL PEAK 29(19Q13.42) WILD-TYPE
  CLUS_1                            36                              55
  CLUS_2                           109                              28
  CLUS_3                           115                              73
  CLUS_4                            17                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 30(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED        4      1      1
  DEL PEAK 30(22Q13.31) WILD-TYPE      5      9      7
D51V1, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             1                               9
  CLUS_3                             1                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED        2      4      0      0
  DEL PEAK 30(22Q13.31) WILD-TYPE      5      3      7      6
D51V2, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                             2                               5
  CLUS_2                             4                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED       34     35      8
  DEL PEAK 30(22Q13.31) WILD-TYPE    138     85    213
D51V3, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            34                             138
  CLUS_2                            35                              85
  CLUS_3                             8                             213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED       39     29      4      5
  DEL PEAK 30(22Q13.31) WILD-TYPE    186     52    163     35
D51V4, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            39                             186
  CLUS_2                            29                              52
  CLUS_3                             4                             163
  CLUS_4                             5                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED        4     21      8      6
  DEL PEAK 30(22Q13.31) WILD-TYPE     48     41     60     68
D51V5, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                             4                              48
  CLUS_2                            21                              41
  CLUS_3                             8                              60
  CLUS_4                             6                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED        4     28      7
  DEL PEAK 30(22Q13.31) WILD-TYPE     63    103     51
D51V6, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                             4                              63
  CLUS_2                            28                             103
  CLUS_3                             7                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(22Q13.31) MUTATED       15     40      2     14      5
  DEL PEAK 30(22Q13.31) WILD-TYPE    120     72    106    114     23
D51V7, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            15                             120
  CLUS_2                            40                              72
  CLUS_3                             2                             106
  CLUS_4                            14                             114
  CLUS_5                             5                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED       17     39      4     16
  DEL PEAK 30(22Q13.31) WILD-TYPE    118     74    121    122
D51V8, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            17                             118
  CLUS_2                            39                              74
  CLUS_3                             4                             121
  CLUS_4                            16                             122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED       25     23     22      7
  DEL PEAK 30(22Q13.31) WILD-TYPE    112     84    161     75
D51V9, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            25                             112
  CLUS_2                            23                              84
  CLUS_3                            22                             161
  CLUS_4                             7                              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED       27     18     32
  DEL PEAK 30(22Q13.31) WILD-TYPE    195    166     71
D51V10, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            27                             195
  CLUS_2                            18                             166
  CLUS_3                            32                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(22Q13.31) MUTATED       42     18     16
  DEL PEAK 30(22Q13.31) WILD-TYPE    143    143    143
D51V11, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            42                             143
  CLUS_2                            18                             143
  CLUS_3                            16                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(22Q13.31) MUTATED       11     18     18     29
  DEL PEAK 30(22Q13.31) WILD-TYPE     80    119    170     60
D51V12, multiclass
        clus
vv       DEL PEAK 30(22Q13.31) MUTATED DEL PEAK 30(22Q13.31) WILD-TYPE
  CLUS_1                            11                              80
  CLUS_2                            18                             119
  CLUS_3                            18                             170
  CLUS_4                            29                              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 31(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XQ21.1) MUTATED        1      2      2
  DEL PEAK 31(XQ21.1) WILD-TYPE      8      8      6
D52V1, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             8
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XQ21.1) MUTATED        1      3      0      1
  DEL PEAK 31(XQ21.1) WILD-TYPE      6      4      7      5
D52V2, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           3                             4
  CLUS_3                           0                             7
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XQ21.1) MUTATED       32     13     33
  DEL PEAK 31(XQ21.1) WILD-TYPE    140    107    188
D52V3, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          32                           140
  CLUS_2                          13                           107
  CLUS_3                          33                           188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XQ21.1) MUTATED       37     10     30      1
  DEL PEAK 31(XQ21.1) WILD-TYPE    188     71    137     39
D52V4, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          37                           188
  CLUS_2                          10                            71
  CLUS_3                          30                           137
  CLUS_4                           1                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XQ21.1) MUTATED        7     14      7      5
  DEL PEAK 31(XQ21.1) WILD-TYPE     45     48     61     69
D52V5, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          14                            48
  CLUS_3                           7                            61
  CLUS_4                           5                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XQ21.1) MUTATED        7     22      4
  DEL PEAK 31(XQ21.1) WILD-TYPE     60    109     54
D52V6, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                          22                           109
  CLUS_3                           4                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(XQ21.1) MUTATED       14     24     24     15      1
  DEL PEAK 31(XQ21.1) WILD-TYPE    121     88     84    113     27
D52V7, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          14                           121
  CLUS_2                          24                            88
  CLUS_3                          24                            84
  CLUS_4                          15                           113
  CLUS_5                           1                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XQ21.1) MUTATED       13     25     28     12
  DEL PEAK 31(XQ21.1) WILD-TYPE    122     88     97    126
D52V8, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                          25                            88
  CLUS_3                          28                            97
  CLUS_4                          12                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XQ21.1) MUTATED       14     19     21     24
  DEL PEAK 31(XQ21.1) WILD-TYPE    123     88    162     58
D52V9, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          14                           123
  CLUS_2                          19                            88
  CLUS_3                          21                           162
  CLUS_4                          24                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XQ21.1) MUTATED       36     23     19
  DEL PEAK 31(XQ21.1) WILD-TYPE    186    161     84
D52V10, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          36                           186
  CLUS_2                          23                           161
  CLUS_3                          19                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(XQ21.1) MUTATED       30     30     17
  DEL PEAK 31(XQ21.1) WILD-TYPE    155    131    142
D52V11, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          30                           155
  CLUS_2                          30                           131
  CLUS_3                          17                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(XQ21.1) MUTATED       13     27     21     16
  DEL PEAK 31(XQ21.1) WILD-TYPE     78    110    167     73
D52V12, multiclass
        clus
vv       DEL PEAK 31(XQ21.1) MUTATED DEL PEAK 31(XQ21.1) WILD-TYPE
  CLUS_1                          13                            78
  CLUS_2                          27                           110
  CLUS_3                          21                           167
  CLUS_4                          16                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
