[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTLUAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/11590629/LUAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/11548107/transformed.cor.cli.txt"

nPatients in clinical file=519, in cluster file=515, common to both=515
[1]  74 515
[1] "AMP PEAK  1(1P34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          138                           377 
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          138                           377 
[1] "AMP PEAK  2(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE 
                          141                           374 
  AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE 
                          141                           374 
[1] "AMP PEAK  3(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          376                           139 
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          376                           139 
[1] "AMP PEAK  4(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          170                           345 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          170                           345 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         96                         419 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         96                         419 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           334                            181 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           334                            181 
[1] "AMP PEAK  7(5P13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE 
                          304                           211 
  AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE 
                          304                           211 
[1] "AMP PEAK  8(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                          189                           326 
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                          189                           326 
[1] "AMP PEAK  9(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                          273                           242 
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                          273                           242 
[1] "AMP PEAK 10(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                          216                           299 
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                          216                           299 
[1] "AMP PEAK 11(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE 
                           137                            378 
  AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE 
                           137                            378 
[1] "AMP PEAK 12(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           174                            341 
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           174                            341 
[1] "AMP PEAK 13(8Q11.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE 
                          234                           281 
  AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE 
                          234                           281 
[1] "AMP PEAK 14(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           324                            191 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           324                            191 
[1] "AMP PEAK 15(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                           141                            374 
  AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE 
                           141                            374 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           174                            341 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           174                            341 
[1] "AMP PEAK 17(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                           179                            336 
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                           179                            336 
[1] "AMP PEAK 18(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE 
                           170                            345 
  AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE 
                           170                            345 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         171                          344 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         171                          344 
[1] "AMP PEAK 20(13Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE 
                            77                            438 
  AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE 
                            77                            438 
[1] "AMP PEAK 21(14Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE 
                           230                            285 
  AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE 
                           230                            285 
[1] "AMP PEAK 22(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE 
                           168                            347 
  AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE 
                           168                            347 
[1] "AMP PEAK 23(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         227                          288 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         227                          288 
[1] "AMP PEAK 24(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           249                            266 
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           249                            266 
[1] "AMP PEAK 25(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE 
                           104                            411 
  AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE 
                           104                            411 
[1] "AMP PEAK 26(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         139                          376 
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         139                          376 
[1] "AMP PEAK 27(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                            250                             265 
  AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE 
                            250                             265 
[1] "AMP PEAK 28(22Q11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE 
                             90                             425 
  AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE 
                             90                             425 
[1] "AMP PEAK 29(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                        158                         357 
  AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE 
                        158                         357 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           120                            395 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           120                            395 
[1] "DEL PEAK  2(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          151                           364 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                          151                           364 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           45                           470 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           45                           470 
[1] "DEL PEAK  4(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE 
                          232                           283 
  DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE 
                          232                           283 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           247                            268 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           247                            268 
[1] "DEL PEAK  6(3Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE 
                          139                           376 
  DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE 
                          139                           376 
[1] "DEL PEAK  7(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                        135                         380 
  DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE 
                        135                         380 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                          130                           385 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                          130                           385 
[1] "DEL PEAK  9(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          186                           329 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          186                           329 
[1] "DEL PEAK 10(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          179                           336 
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          179                           336 
[1] "DEL PEAK 11(5Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE 
                          210                           305 
  DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE 
                          210                           305 
[1] "DEL PEAK 12(6Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE 
                          139                           376 
  DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE 
                          139                           376 
[1] "DEL PEAK 13(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE 
                           255                            260 
  DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE 
                           255                            260 
[1] "DEL PEAK 14(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        257                         258 
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                        257                         258 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          252                           263 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          252                           263 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           125                            390 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           125                            390 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        286                         229 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        286                         229 
[1] "DEL PEAK 18(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          292                           223 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          292                           223 
[1] "DEL PEAK 19(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           257                            258 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           257                            258 
[1] "DEL PEAK 20(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           125                            390 
  DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE 
                           125                            390 
[1] "DEL PEAK 21(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           147                            368 
  DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE 
                           147                            368 
[1] "DEL PEAK 22(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           142                            373 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                           142                            373 
[1] "DEL PEAK 23(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE 
                           120                            395 
  DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE 
                           120                            395 
[1] "DEL PEAK 24(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE 
                         116                          399 
  DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE 
                         116                          399 
[1] "DEL PEAK 25(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE 
                           139                            376 
  DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE 
                           139                            376 
[1] "DEL PEAK 26(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE 
                          98                          417 
  DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE 
                          98                          417 
[1] "DEL PEAK 27(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                            130                             385 
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                            130                             385 
[1] "DEL PEAK 28(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE 
                            293                             222 
  DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE 
                            293                             222 
[1] "DEL PEAK 29(13Q12.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE 
                            292                             223 
  DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE 
                            292                             223 
[1] "DEL PEAK 30(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           282                            233 
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           282                            233 
[1] "DEL PEAK 31(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE 
                         241                          274 
  DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE 
                         241                          274 
[1] "DEL PEAK 32(14Q32.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE 
                            150                             365 
  DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE 
                            150                             365 
[1] "DEL PEAK 33(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE 
                           263                            252 
  DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE 
                           263                            252 
[1] "DEL PEAK 34(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                           169                            346 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                           169                            346 
[1] "DEL PEAK 35(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE 
                           278                            237 
  DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE 
                           278                            237 
[1] "DEL PEAK 36(18Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE 
                            254                             261 
  DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE 
                            254                             261 
[1] "DEL PEAK 37(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE 
                         249                          266 
  DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE 
                         249                          266 
[1] "DEL PEAK 38(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE 
                           275                            240 
  DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE 
                           275                            240 
[1] "DEL PEAK 39(19P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE 
                           268                            247 
  DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE 
                           268                            247 
[1] "DEL PEAK 40(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE 
                            194                             321 
  DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE 
                            194                             321 
[1] "DEL PEAK 41(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE 
                         130                          385 
  DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE 
                         130                          385 
[1] "DEL PEAK 42(20Q13.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE 
                             82                             433 
  DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE 
                             82                             433 
[1] "DEL PEAK 43(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE 
                           176                            339 
  DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE 
                           176                            339 
[1] "DEL PEAK 44(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            250                             265 
  DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE 
                            250                             265 
[1] "DEL PEAK 45(XP22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE 
                          144                           371 
  DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE 
                          144                           371 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 515 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 515 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=9, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED        0      3      4      1
  AMP PEAK  1(1P34.3) WILD-TYPE      5      6      8      5
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           3                             6
  CLUS_3                           4                             8
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED        5      2      1
  AMP PEAK  1(1P34.3) WILD-TYPE      9      9      6
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           2                             9
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       84     39     15
  AMP PEAK  1(1P34.3) WILD-TYPE    107    190     80
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          84                           107
  CLUS_2                          39                           190
  CLUS_3                          15                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       25     42     28     26
  AMP PEAK  1(1P34.3) WILD-TYPE     71     83     80     90
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          25                            71
  CLUS_2                          42                            83
  CLUS_3                          28                            80
  CLUS_4                          26                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       15     29     11
  AMP PEAK  1(1P34.3) WILD-TYPE     29     44     53
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          15                            29
  CLUS_2                          29                            44
  CLUS_3                          11                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.3) MUTATED       16      8     17      5      9
  AMP PEAK  1(1P34.3) WILD-TYPE     24     25     28     26     23
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          16                            24
  CLUS_2                           8                            25
  CLUS_3                          17                            28
  CLUS_4                           5                            26
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.3) MUTATED       44     30     12     34     11
  AMP PEAK  1(1P34.3) WILD-TYPE     94     82     64     72     43
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          44                            94
  CLUS_2                          30                            82
  CLUS_3                          12                            64
  CLUS_4                          34                            72
  CLUS_5                          11                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.3) MUTATED       28     19      7     36      7     11
  AMP PEAK  1(1P34.3) WILD-TYPE     55     38     37     48     39     40
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(1P34.3) MUTATED        9      2     12
  AMP PEAK  1(1P34.3) WILD-TYPE     40     16     42
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          28                            55
  CLUS_2                          19                            38
  CLUS_3                           7                            37
  CLUS_4                          36                            48
  CLUS_5                           7                            39
  CLUS_6                          11                            40
  CLUS_7                           9                            40
  CLUS_8                           2                            16
  CLUS_9                          12                            42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       43     63     32
  AMP PEAK  1(1P34.3) WILD-TYPE    146    165     61
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          43                           146
  CLUS_2                          63                           165
  CLUS_3                          32                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       13     50     35     40
  AMP PEAK  1(1P34.3) WILD-TYPE     58    148    106     60
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          13                            58
  CLUS_2                          50                           148
  CLUS_3                          35                           106
  CLUS_4                          40                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       46     48     26
  AMP PEAK  1(1P34.3) WILD-TYPE     99    150     65
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          46                            99
  CLUS_2                          48                           150
  CLUS_3                          26                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       21     65     34
  AMP PEAK  1(1P34.3) WILD-TYPE     82    183     49
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          21                            82
  CLUS_2                          65                           183
  CLUS_3                          34                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P22.3) MUTATED        1      3      2      1
  AMP PEAK  2(1P22.3) WILD-TYPE      4      6     10      5
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           2                            10
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P22.3) MUTATED        3      3      1
  AMP PEAK  2(1P22.3) WILD-TYPE     11      8      6
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             8
  CLUS_3                           1                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P22.3) MUTATED       84     41     16
  AMP PEAK  2(1P22.3) WILD-TYPE    107    188     79
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          84                           107
  CLUS_2                          41                           188
  CLUS_3                          16                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P22.3) MUTATED       18     38     35     31
  AMP PEAK  2(1P22.3) WILD-TYPE     78     87     73     85
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          18                            78
  CLUS_2                          38                            87
  CLUS_3                          35                            73
  CLUS_4                          31                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P22.3) MUTATED       15     28     11
  AMP PEAK  2(1P22.3) WILD-TYPE     29     45     53
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          15                            29
  CLUS_2                          28                            45
  CLUS_3                          11                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P22.3) MUTATED       15      8     16      7      8
  AMP PEAK  2(1P22.3) WILD-TYPE     25     25     29     24     24
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          15                            25
  CLUS_2                           8                            25
  CLUS_3                          16                            29
  CLUS_4                           7                            24
  CLUS_5                           8                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P22.3) MUTATED       49     27     16     31      9
  AMP PEAK  2(1P22.3) WILD-TYPE     89     85     60     75     45
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          49                            89
  CLUS_2                          27                            85
  CLUS_3                          16                            60
  CLUS_4                          31                            75
  CLUS_5                           9                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P22.3) MUTATED       28     15     11     34      7     11
  AMP PEAK  2(1P22.3) WILD-TYPE     55     42     33     50     39     40
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(1P22.3) MUTATED       15      2      9
  AMP PEAK  2(1P22.3) WILD-TYPE     34     16     45
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          28                            55
  CLUS_2                          15                            42
  CLUS_3                          11                            33
  CLUS_4                          34                            50
  CLUS_5                           7                            39
  CLUS_6                          11                            40
  CLUS_7                          15                            34
  CLUS_8                           2                            16
  CLUS_9                           9                            45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P22.3) MUTATED       42     70     28
  AMP PEAK  2(1P22.3) WILD-TYPE    147    158     65
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          42                           147
  CLUS_2                          70                           158
  CLUS_3                          28                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P22.3) MUTATED       16     52     33     39
  AMP PEAK  2(1P22.3) WILD-TYPE     55    146    108     61
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          16                            55
  CLUS_2                          52                           146
  CLUS_3                          33                           108
  CLUS_4                          39                            61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P22.3) MUTATED       45     56     21
  AMP PEAK  2(1P22.3) WILD-TYPE    100    142     70
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          45                           100
  CLUS_2                          56                           142
  CLUS_3                          21                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P22.3) MUTATED       22     73     27
  AMP PEAK  2(1P22.3) WILD-TYPE     81    175     56
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          22                            81
  CLUS_2                          73                           175
  CLUS_3                          27                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED        4      7      7      2
  AMP PEAK  3(1Q21.3) WILD-TYPE      1      2      5      4
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           7                             2
  CLUS_3                           7                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED        9      8      3
  AMP PEAK  3(1Q21.3) WILD-TYPE      5      3      4
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           8                             3
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED      153    140     83
  AMP PEAK  3(1Q21.3) WILD-TYPE     38     89     12
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         153                            38
  CLUS_2                         140                            89
  CLUS_3                          83                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED       66    113     85     63
  AMP PEAK  3(1Q21.3) WILD-TYPE     30     12     23     53
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          66                            30
  CLUS_2                         113                            12
  CLUS_3                          85                            23
  CLUS_4                          63                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       39     56     46
  AMP PEAK  3(1Q21.3) WILD-TYPE      5     17     18
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          39                             5
  CLUS_2                          56                            17
  CLUS_3                          46                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED       32     30     34     18     27
  AMP PEAK  3(1Q21.3) WILD-TYPE      8      3     11     13      5
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          32                             8
  CLUS_2                          30                             3
  CLUS_3                          34                            11
  CLUS_4                          18                            13
  CLUS_5                          27                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q21.3) MUTATED      102     79     47     90     35
  AMP PEAK  3(1Q21.3) WILD-TYPE     36     33     29     16     19
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         102                            36
  CLUS_2                          79                            33
  CLUS_3                          47                            29
  CLUS_4                          90                            16
  CLUS_5                          35                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q21.3) MUTATED       65     39     23     60     44     43
  AMP PEAK  3(1Q21.3) WILD-TYPE     18     18     21     24      2      8
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(1Q21.3) MUTATED       38      5     36
  AMP PEAK  3(1Q21.3) WILD-TYPE     11     13     18
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          65                            18
  CLUS_2                          39                            18
  CLUS_3                          23                            21
  CLUS_4                          60                            24
  CLUS_5                          44                             2
  CLUS_6                          43                             8
  CLUS_7                          38                            11
  CLUS_8                           5                            13
  CLUS_9                          36                            18
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED      124    182     66
  AMP PEAK  3(1Q21.3) WILD-TYPE     65     46     27
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         124                            65
  CLUS_2                         182                            46
  CLUS_3                          66                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q21.3) MUTATED       54    157     84     77
  AMP PEAK  3(1Q21.3) WILD-TYPE     17     41     57     23
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          54                            17
  CLUS_2                         157                            41
  CLUS_3                          84                            57
  CLUS_4                          77                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED      112    152     54
  AMP PEAK  3(1Q21.3) WILD-TYPE     33     46     37
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         112                            33
  CLUS_2                         152                            46
  CLUS_3                          54                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q21.3) MUTATED       69    185     64
  AMP PEAK  3(1Q21.3) WILD-TYPE     34     63     19
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          69                            34
  CLUS_2                         185                            63
  CLUS_3                          64                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED        0      6      0      4
  AMP PEAK  4(3Q26.2) WILD-TYPE      5      3     12      2
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           6                             3
  CLUS_3                           0                            12
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED        0      6      4
  AMP PEAK  4(3Q26.2) WILD-TYPE     14      5      3
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             5
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       85     44     41
  AMP PEAK  4(3Q26.2) WILD-TYPE    106    185     54
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          85                           106
  CLUS_2                          44                           185
  CLUS_3                          41                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED        7     58     37     40
  AMP PEAK  4(3Q26.2) WILD-TYPE     89     67     71     76
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           7                            89
  CLUS_2                          58                            67
  CLUS_3                          37                            71
  CLUS_4                          40                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       11     26     21
  AMP PEAK  4(3Q26.2) WILD-TYPE     33     47     43
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          26                            47
  CLUS_3                          21                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       14      3     18     13     10
  AMP PEAK  4(3Q26.2) WILD-TYPE     26     30     27     18     22
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          14                            26
  CLUS_2                           3                            30
  CLUS_3                          18                            27
  CLUS_4                          13                            18
  CLUS_5                          10                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.2) MUTATED       56      7     32     50     17
  AMP PEAK  4(3Q26.2) WILD-TYPE     82    105     44     56     37
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          56                            82
  CLUS_2                           7                           105
  CLUS_3                          32                            44
  CLUS_4                          50                            56
  CLUS_5                          17                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.2) MUTATED       23      5     20     57      5     17
  AMP PEAK  4(3Q26.2) WILD-TYPE     60     52     24     27     41     34
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(3Q26.2) MUTATED       18      5     12
  AMP PEAK  4(3Q26.2) WILD-TYPE     31     13     42
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          23                            60
  CLUS_2                           5                            52
  CLUS_3                          20                            24
  CLUS_4                          57                            27
  CLUS_5                           5                            41
  CLUS_6                          17                            34
  CLUS_7                          18                            31
  CLUS_8                           5                            13
  CLUS_9                          12                            42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       41    103     24
  AMP PEAK  4(3Q26.2) WILD-TYPE    148    125     69
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          41                           148
  CLUS_2                         103                           125
  CLUS_3                          24                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.2) MUTATED       12     67     35     54
  AMP PEAK  4(3Q26.2) WILD-TYPE     59    131    106     46
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          67                           131
  CLUS_3                          35                           106
  CLUS_4                          54                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       47     69     25
  AMP PEAK  4(3Q26.2) WILD-TYPE     98    129     66
D4V11, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          47                            98
  CLUS_2                          69                           129
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.2) MUTATED       15    101     25
  AMP PEAK  4(3Q26.2) WILD-TYPE     88    147     58
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          15                            88
  CLUS_2                         101                           147
  CLUS_3                          25                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        1      3      3      3
  AMP PEAK  5(4Q12) WILD-TYPE      4      6      9      3
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                           4
  CLUS_2                         3                           6
  CLUS_3                         3                           9
  CLUS_4                         3                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        4      2      4
  AMP PEAK  5(4Q12) WILD-TYPE     10      9      3
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         2                           9
  CLUS_3                         4                           3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       62     21     13
  AMP PEAK  5(4Q12) WILD-TYPE    129    208     82
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        62                         129
  CLUS_2                        21                         208
  CLUS_3                        13                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       14     30     21     15
  AMP PEAK  5(4Q12) WILD-TYPE     82     95     87    101
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        14                          82
  CLUS_2                        30                          95
  CLUS_3                        21                          87
  CLUS_4                        15                         101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        4     17     12
  AMP PEAK  5(4Q12) WILD-TYPE     40     56     52
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          40
  CLUS_2                        17                          56
  CLUS_3                        12                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        8      3     13      8      1
  AMP PEAK  5(4Q12) WILD-TYPE     32     30     32     23     31
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         8                          32
  CLUS_2                         3                          30
  CLUS_3                        13                          32
  CLUS_4                         8                          23
  CLUS_5                         1                          31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED       38     12     12     24      6
  AMP PEAK  5(4Q12) WILD-TYPE    100    100     64     82     48
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        38                         100
  CLUS_2                        12                         100
  CLUS_3                        12                          64
  CLUS_4                        24                          82
  CLUS_5                         6                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED       20      6     11     25      5      9     11
  AMP PEAK  5(4Q12) WILD-TYPE     63     51     33     59     41     42     38
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK  5(4Q12) MUTATED        1      4
  AMP PEAK  5(4Q12) WILD-TYPE     17     50
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        20                          63
  CLUS_2                         6                          51
  CLUS_3                        11                          33
  CLUS_4                        25                          59
  CLUS_5                         5                          41
  CLUS_6                         9                          42
  CLUS_7                        11                          38
  CLUS_8                         1                          17
  CLUS_9                         4                          50
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       23     55     18
  AMP PEAK  5(4Q12) WILD-TYPE    166    173     75
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        23                         166
  CLUS_2                        55                         173
  CLUS_3                        18                          75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       10     51     14     21
  AMP PEAK  5(4Q12) WILD-TYPE     61    147    127     79
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        10                          61
  CLUS_2                        51                         147
  CLUS_3                        14                         127
  CLUS_4                        21                          79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       24     38     17
  AMP PEAK  5(4Q12) WILD-TYPE    121    160     74
D5V11, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        24                         121
  CLUS_2                        38                         160
  CLUS_3                        17                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        7     55     17
  AMP PEAK  5(4Q12) WILD-TYPE     96    193     66
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                          96
  CLUS_2                        55                         193
  CLUS_3                        17                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED        4      5      7      4
  AMP PEAK  6(5P15.33) WILD-TYPE      1      4      5      2
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            5                              4
  CLUS_3                            7                              5
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED        9      6      5
  AMP PEAK  6(5P15.33) WILD-TYPE      5      5      2
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            6                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED      171    110     53
  AMP PEAK  6(5P15.33) WILD-TYPE     20    119     42
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          171                             20
  CLUS_2                          110                            119
  CLUS_3                           53                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       57     93     71     71
  AMP PEAK  6(5P15.33) WILD-TYPE     39     32     37     45
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           57                             39
  CLUS_2                           93                             32
  CLUS_3                           71                             37
  CLUS_4                           71                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       26     59     40
  AMP PEAK  6(5P15.33) WILD-TYPE     18     14     24
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           26                             18
  CLUS_2                           59                             14
  CLUS_3                           40                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED       32     19     36     15     23
  AMP PEAK  6(5P15.33) WILD-TYPE      8     14      9     16      9
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           32                              8
  CLUS_2                           19                             14
  CLUS_3                           36                              9
  CLUS_4                           15                             16
  CLUS_5                           23                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED      111     63     33     73     33
  AMP PEAK  6(5P15.33) WILD-TYPE     27     49     43     33     21
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          111                             27
  CLUS_2                           63                             49
  CLUS_3                           33                             43
  CLUS_4                           73                             33
  CLUS_5                           33                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(5P15.33) MUTATED       65     33     28     70     20     34
  AMP PEAK  6(5P15.33) WILD-TYPE     18     24     16     14     26     17
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(5P15.33) MUTATED       30      0     33
  AMP PEAK  6(5P15.33) WILD-TYPE     19     18     21
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           65                             18
  CLUS_2                           33                             24
  CLUS_3                           28                             16
  CLUS_4                           70                             14
  CLUS_5                           20                             26
  CLUS_6                           34                             17
  CLUS_7                           30                             19
  CLUS_8                            0                             18
  CLUS_9                           33                             21
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED      105    166     62
  AMP PEAK  6(5P15.33) WILD-TYPE     84     62     31
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          105                             84
  CLUS_2                          166                             62
  CLUS_3                           62                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       46    137     74     76
  AMP PEAK  6(5P15.33) WILD-TYPE     25     61     67     24
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           46                             25
  CLUS_2                          137                             61
  CLUS_3                           74                             67
  CLUS_4                           76                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       91    137     58
  AMP PEAK  6(5P15.33) WILD-TYPE     54     61     33
D6V11, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           91                             54
  CLUS_2                          137                             61
  CLUS_3                           58                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       43    187     56
  AMP PEAK  6(5P15.33) WILD-TYPE     60     61     27
D6V12, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           43                             60
  CLUS_2                          187                             61
  CLUS_3                           56                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.1) MUTATED        5      5      6      3
  AMP PEAK  7(5P13.1) WILD-TYPE      0      4      6      3
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           5                             4
  CLUS_3                           6                             6
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.1) MUTATED        8      7      4
  AMP PEAK  7(5P13.1) WILD-TYPE      6      4      3
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           7                             4
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.1) MUTATED      154     96     54
  AMP PEAK  7(5P13.1) WILD-TYPE     37    133     41
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                         154                            37
  CLUS_2                          96                           133
  CLUS_3                          54                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.1) MUTATED       53     92     60     64
  AMP PEAK  7(5P13.1) WILD-TYPE     43     33     48     52
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          53                            43
  CLUS_2                          92                            33
  CLUS_3                          60                            48
  CLUS_4                          64                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.1) MUTATED       24     52     36
  AMP PEAK  7(5P13.1) WILD-TYPE     20     21     28
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          24                            20
  CLUS_2                          52                            21
  CLUS_3                          36                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P13.1) MUTATED       30     18     29     13     22
  AMP PEAK  7(5P13.1) WILD-TYPE     10     15     16     18     10
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          30                            10
  CLUS_2                          18                            15
  CLUS_3                          29                            16
  CLUS_4                          13                            18
  CLUS_5                          22                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P13.1) MUTATED       94     55     29     76     31
  AMP PEAK  7(5P13.1) WILD-TYPE     44     57     47     30     23
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          94                            44
  CLUS_2                          55                            57
  CLUS_3                          29                            47
  CLUS_4                          76                            30
  CLUS_5                          31                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P13.1) MUTATED       59     29     22     67     18     36
  AMP PEAK  7(5P13.1) WILD-TYPE     24     28     22     17     28     15
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(5P13.1) MUTATED       24      0     30
  AMP PEAK  7(5P13.1) WILD-TYPE     25     18     24
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          59                            24
  CLUS_2                          29                            28
  CLUS_3                          22                            22
  CLUS_4                          67                            17
  CLUS_5                          18                            28
  CLUS_6                          36                            15
  CLUS_7                          24                            25
  CLUS_8                           0                            18
  CLUS_9                          30                            24
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.1) MUTATED       90    156     57
  AMP PEAK  7(5P13.1) WILD-TYPE     99     72     36
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          90                            99
  CLUS_2                         156                            72
  CLUS_3                          57                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P13.1) MUTATED       41    126     64     72
  AMP PEAK  7(5P13.1) WILD-TYPE     30     72     77     28
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          41                            30
  CLUS_2                         126                            72
  CLUS_3                          64                            77
  CLUS_4                          72                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.1) MUTATED       81    128     53
  AMP PEAK  7(5P13.1) WILD-TYPE     64     70     38
D7V11, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          81                            64
  CLUS_2                         128                            70
  CLUS_3                          53                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P13.1) MUTATED       37    175     50
  AMP PEAK  7(5P13.1) WILD-TYPE     66     73     33
D7V12, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          37                            66
  CLUS_2                         175                            73
  CLUS_3                          50                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED        1      2      4      3
  AMP PEAK  8(6P21.1) WILD-TYPE      4      7      8      3
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           2                             7
  CLUS_3                           4                             8
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED        4      2      4
  AMP PEAK  8(6P21.1) WILD-TYPE     10      9      3
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                             9
  CLUS_3                           4                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       80     58     51
  AMP PEAK  8(6P21.1) WILD-TYPE    111    171     44
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          80                           111
  CLUS_2                          58                           171
  CLUS_3                          51                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       33     76     42     18
  AMP PEAK  8(6P21.1) WILD-TYPE     63     49     66     98
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          33                            63
  CLUS_2                          76                            49
  CLUS_3                          42                            66
  CLUS_4                          18                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       22     22     24
  AMP PEAK  8(6P21.1) WILD-TYPE     22     51     40
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          22                            22
  CLUS_2                          22                            51
  CLUS_3                          24                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.1) MUTATED       19     13     14      9     13
  AMP PEAK  8(6P21.1) WILD-TYPE     21     20     31     22     19
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          13                            20
  CLUS_3                          14                            31
  CLUS_4                           9                            22
  CLUS_5                          13                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P21.1) MUTATED       46     41     20     56     19
  AMP PEAK  8(6P21.1) WILD-TYPE     92     71     56     50     35
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          46                            92
  CLUS_2                          41                            71
  CLUS_3                          20                            56
  CLUS_4                          56                            50
  CLUS_5                          19                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       28     20     12     40     24     24
  AMP PEAK  8(6P21.1) WILD-TYPE     55     37     32     44     22     27
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(6P21.1) MUTATED       16      0     18
  AMP PEAK  8(6P21.1) WILD-TYPE     33     18     36
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          28                            55
  CLUS_2                          20                            37
  CLUS_3                          12                            32
  CLUS_4                          40                            44
  CLUS_5                          24                            22
  CLUS_6                          24                            27
  CLUS_7                          16                            33
  CLUS_8                           0                            18
  CLUS_9                          18                            36
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       57     97     31
  AMP PEAK  8(6P21.1) WILD-TYPE    132    131     62
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          57                           132
  CLUS_2                          97                           131
  CLUS_3                          31                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       21     85     37     42
  AMP PEAK  8(6P21.1) WILD-TYPE     50    113    104     58
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          21                            50
  CLUS_2                          85                           113
  CLUS_3                          37                           104
  CLUS_4                          42                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       48     80     32
  AMP PEAK  8(6P21.1) WILD-TYPE     97    118     59
D8V11, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          48                            97
  CLUS_2                          80                           118
  CLUS_3                          32                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       27     97     36
  AMP PEAK  8(6P21.1) WILD-TYPE     76    151     47
D8V12, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          27                            76
  CLUS_2                          97                           151
  CLUS_3                          36                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7P11.2) MUTATED        2      5      7      3
  AMP PEAK  9(7P11.2) WILD-TYPE      3      4      5      3
D9V1, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           5                             4
  CLUS_3                           7                             5
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED        8      6      3
  AMP PEAK  9(7P11.2) WILD-TYPE      6      5      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           6                             5
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED      145     89     39
  AMP PEAK  9(7P11.2) WILD-TYPE     46    140     56
D9V3, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                         145                            46
  CLUS_2                          89                           140
  CLUS_3                          39                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7P11.2) MUTATED       35     67     69     63
  AMP PEAK  9(7P11.2) WILD-TYPE     61     58     39     53
D9V4, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          35                            61
  CLUS_2                          67                            58
  CLUS_3                          69                            39
  CLUS_4                          63                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       14     48     33
  AMP PEAK  9(7P11.2) WILD-TYPE     30     25     31
D9V5, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          14                            30
  CLUS_2                          48                            25
  CLUS_3                          33                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P11.2) MUTATED       25     13     32     13     12
  AMP PEAK  9(7P11.2) WILD-TYPE     15     20     13     18     20
D9V6, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          25                            15
  CLUS_2                          13                            20
  CLUS_3                          32                            13
  CLUS_4                          13                            18
  CLUS_5                          12                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(7P11.2) MUTATED      106     36     40     46     28
  AMP PEAK  9(7P11.2) WILD-TYPE     32     76     36     60     26
D9V7, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                         106                            32
  CLUS_2                          36                            76
  CLUS_3                          40                            36
  CLUS_4                          46                            60
  CLUS_5                          28                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(7P11.2) MUTATED       53     23     35     48      9     23
  AMP PEAK  9(7P11.2) WILD-TYPE     30     34      9     36     37     28
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(7P11.2) MUTATED       32      2     31
  AMP PEAK  9(7P11.2) WILD-TYPE     17     16     23
D9V8, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          53                            30
  CLUS_2                          23                            34
  CLUS_3                          35                             9
  CLUS_4                          48                            36
  CLUS_5                           9                            37
  CLUS_6                          23                            28
  CLUS_7                          32                            17
  CLUS_8                           2                            16
  CLUS_9                          31                            23
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       71    134     65
  AMP PEAK  9(7P11.2) WILD-TYPE    118     94     28
D9V9, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          71                           118
  CLUS_2                         134                            94
  CLUS_3                          65                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(7P11.2) MUTATED       22    127     64     57
  AMP PEAK  9(7P11.2) WILD-TYPE     49     71     77     43
D9V10, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          22                            49
  CLUS_2                         127                            71
  CLUS_3                          64                            77
  CLUS_4                          57                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       62    107     65
  AMP PEAK  9(7P11.2) WILD-TYPE     83     91     26
D9V11, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          62                            83
  CLUS_2                         107                            91
  CLUS_3                          65                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(7P11.2) MUTATED       31    154     49
  AMP PEAK  9(7P11.2) WILD-TYPE     72     94     34
D9V12, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          31                            72
  CLUS_2                         154                            94
  CLUS_3                          49                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED        2      6      4      2
  AMP PEAK 10(7Q31.2) WILD-TYPE      3      3      8      4
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           6                             3
  CLUS_3                           4                             8
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED        5      7      2
  AMP PEAK 10(7Q31.2) WILD-TYPE      9      4      5
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           7                             4
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED      116     63     37
  AMP PEAK 10(7Q31.2) WILD-TYPE     75    166     58
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                         116                            75
  CLUS_2                          63                           166
  CLUS_3                          37                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       27     46     58     52
  AMP PEAK 10(7Q31.2) WILD-TYPE     69     79     50     64
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          27                            69
  CLUS_2                          46                            79
  CLUS_3                          58                            50
  CLUS_4                          52                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       12     35     25
  AMP PEAK 10(7Q31.2) WILD-TYPE     32     38     39
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          35                            38
  CLUS_3                          25                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7Q31.2) MUTATED       21     10     21      8     12
  AMP PEAK 10(7Q31.2) WILD-TYPE     19     23     24     23     20
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          21                            19
  CLUS_2                          10                            23
  CLUS_3                          21                            24
  CLUS_4                           8                            23
  CLUS_5                          12                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7Q31.2) MUTATED       86     24     33     36     23
  AMP PEAK 10(7Q31.2) WILD-TYPE     52     88     43     70     31
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          86                            52
  CLUS_2                          24                            88
  CLUS_3                          33                            43
  CLUS_4                          36                            70
  CLUS_5                          23                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       46     15     33     39      5     15
  AMP PEAK 10(7Q31.2) WILD-TYPE     37     42     11     45     41     36
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(7Q31.2) MUTATED       23      2     24
  AMP PEAK 10(7Q31.2) WILD-TYPE     26     16     30
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          46                            37
  CLUS_2                          15                            42
  CLUS_3                          33                            11
  CLUS_4                          39                            45
  CLUS_5                           5                            41
  CLUS_6                          15                            36
  CLUS_7                          23                            26
  CLUS_8                           2                            16
  CLUS_9                          24                            30
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       59    105     49
  AMP PEAK 10(7Q31.2) WILD-TYPE    130    123     44
D10V9, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          59                           130
  CLUS_2                         105                           123
  CLUS_3                          49                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       19     98     51     45
  AMP PEAK 10(7Q31.2) WILD-TYPE     52    100     90     55
D10V10, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          19                            52
  CLUS_2                          98                           100
  CLUS_3                          51                            90
  CLUS_4                          45                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       53     85     45
  AMP PEAK 10(7Q31.2) WILD-TYPE     92    113     46
D10V11, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          53                            92
  CLUS_2                          85                           113
  CLUS_3                          45                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       22    124     37
  AMP PEAK 10(7Q31.2) WILD-TYPE     81    124     46
D10V12, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          22                            81
  CLUS_2                         124                           124
  CLUS_3                          37                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.23) MUTATED        1      4      1      1
  AMP PEAK 11(8P11.23) WILD-TYPE      4      5     11      5
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            1                             11
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.23) MUTATED        1      5      1
  AMP PEAK 11(8P11.23) WILD-TYPE     13      6      6
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                              6
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.23) MUTATED       39     36     62
  AMP PEAK 11(8P11.23) WILD-TYPE    152    193     33
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           39                            152
  CLUS_2                           36                            193
  CLUS_3                           62                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.23) MUTATED       18     54     25     22
  AMP PEAK 11(8P11.23) WILD-TYPE     78     71     83     94
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           18                             78
  CLUS_2                           54                             71
  CLUS_3                           25                             83
  CLUS_4                           22                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.23) MUTATED       13     18     20
  AMP PEAK 11(8P11.23) WILD-TYPE     31     55     44
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           18                             55
  CLUS_3                           20                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.23) MUTATED       12      8     12     10      9
  AMP PEAK 11(8P11.23) WILD-TYPE     28     25     33     21     23
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                            8                             25
  CLUS_3                           12                             33
  CLUS_4                           10                             21
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.23) MUTATED       28     16     25     49     12
  AMP PEAK 11(8P11.23) WILD-TYPE    110     96     51     57     42
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           28                            110
  CLUS_2                           16                             96
  CLUS_3                           25                             51
  CLUS_4                           49                             57
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.23) MUTATED       22      7     10     27     12     23
  AMP PEAK 11(8P11.23) WILD-TYPE     61     50     34     57     34     28
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(8P11.23) MUTATED       19      0     10
  AMP PEAK 11(8P11.23) WILD-TYPE     30     18     44
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           22                             61
  CLUS_2                            7                             50
  CLUS_3                           10                             34
  CLUS_4                           27                             57
  CLUS_5                           12                             34
  CLUS_6                           23                             28
  CLUS_7                           19                             30
  CLUS_8                            0                             18
  CLUS_9                           10                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.23) MUTATED       38     74     23
  AMP PEAK 11(8P11.23) WILD-TYPE    151    154     70
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           38                            151
  CLUS_2                           74                            154
  CLUS_3                           23                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.23) MUTATED       15     54     27     39
  AMP PEAK 11(8P11.23) WILD-TYPE     56    144    114     61
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           15                             56
  CLUS_2                           54                            144
  CLUS_3                           27                            114
  CLUS_4                           39                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.23) MUTATED       37     58     21
  AMP PEAK 11(8P11.23) WILD-TYPE    108    140     70
D11V11, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           37                            108
  CLUS_2                           58                            140
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.23) MUTATED       17     77     22
  AMP PEAK 11(8P11.23) WILD-TYPE     86    171     61
D11V12, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                           77                            171
  CLUS_3                           22                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED        1      4      1      2
  AMP PEAK 12(8P11.21) WILD-TYPE      4      5     11      4
D12V1, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            1                             11
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED        2      4      2
  AMP PEAK 12(8P11.21) WILD-TYPE     12      7      5
D12V2, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       55     46     73
  AMP PEAK 12(8P11.21) WILD-TYPE    136    183     22
D12V3, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           55                            136
  CLUS_2                           46                            183
  CLUS_3                           73                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       21     61     37     33
  AMP PEAK 12(8P11.21) WILD-TYPE     75     64     71     83
D12V4, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           21                             75
  CLUS_2                           61                             64
  CLUS_3                           37                             71
  CLUS_4                           33                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       13     21     26
  AMP PEAK 12(8P11.21) WILD-TYPE     31     52     38
D12V5, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           21                             52
  CLUS_3                           26                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8P11.21) MUTATED       12     12     16     11      9
  AMP PEAK 12(8P11.21) WILD-TYPE     28     21     29     20     23
D12V6, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                           12                             21
  CLUS_3                           16                             29
  CLUS_4                           11                             20
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8P11.21) MUTATED       44     19     25     63     14
  AMP PEAK 12(8P11.21) WILD-TYPE     94     93     51     43     40
D12V7, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           44                             94
  CLUS_2                           19                             93
  CLUS_3                           25                             51
  CLUS_4                           63                             43
  CLUS_5                           14                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.21) MUTATED       26      9     20     35     15     30
  AMP PEAK 12(8P11.21) WILD-TYPE     57     48     24     49     31     21
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(8P11.21) MUTATED       18      0     12
  AMP PEAK 12(8P11.21) WILD-TYPE     31     18     42
D12V8, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           26                             57
  CLUS_2                            9                             48
  CLUS_3                           20                             24
  CLUS_4                           35                             49
  CLUS_5                           15                             31
  CLUS_6                           30                             21
  CLUS_7                           18                             31
  CLUS_8                            0                             18
  CLUS_9                           12                             42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       45     97     31
  AMP PEAK 12(8P11.21) WILD-TYPE    144    131     62
D12V9, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           45                            144
  CLUS_2                           97                            131
  CLUS_3                           31                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       18     75     32     48
  AMP PEAK 12(8P11.21) WILD-TYPE     53    123    109     52
D12V10, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           75                            123
  CLUS_3                           32                            109
  CLUS_4                           48                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       37     79     32
  AMP PEAK 12(8P11.21) WILD-TYPE    108    119     59
D12V11, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           37                            108
  CLUS_2                           79                            119
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       19    102     27
  AMP PEAK 12(8P11.21) WILD-TYPE     84    146     56
D12V12, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           19                             84
  CLUS_2                          102                            146
  CLUS_3                           27                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q11.1) MUTATED        4      6      1      4
  AMP PEAK 13(8Q11.1) WILD-TYPE      1      3     11      2
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           6                             3
  CLUS_3                           1                            11
  CLUS_4                           4                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q11.1) MUTATED        3      7      5
  AMP PEAK 13(8Q11.1) WILD-TYPE     11      4      2
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           7                             4
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q11.1) MUTATED      102     58     74
  AMP PEAK 13(8Q11.1) WILD-TYPE     89    171     21
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                         102                            89
  CLUS_2                          58                           171
  CLUS_3                          74                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q11.1) MUTATED       28     78     57     41
  AMP PEAK 13(8Q11.1) WILD-TYPE     68     47     51     75
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          28                            68
  CLUS_2                          78                            47
  CLUS_3                          57                            51
  CLUS_4                          41                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q11.1) MUTATED       15     33     32
  AMP PEAK 13(8Q11.1) WILD-TYPE     29     40     32
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          15                            29
  CLUS_2                          33                            40
  CLUS_3                          32                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q11.1) MUTATED       19     13     21     13     14
  AMP PEAK 13(8Q11.1) WILD-TYPE     21     20     24     18     18
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          13                            20
  CLUS_3                          21                            24
  CLUS_4                          13                            18
  CLUS_5                          14                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q11.1) MUTATED       67     28     32     71     21
  AMP PEAK 13(8Q11.1) WILD-TYPE     71     84     44     35     33
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          67                            71
  CLUS_2                          28                            84
  CLUS_3                          32                            44
  CLUS_4                          71                            35
  CLUS_5                          21                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q11.1) MUTATED       35     16     26     42     18     37
  AMP PEAK 13(8Q11.1) WILD-TYPE     48     41     18     42     28     14
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(8Q11.1) MUTATED       24      0     21
  AMP PEAK 13(8Q11.1) WILD-TYPE     25     18     33
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          35                            48
  CLUS_2                          16                            41
  CLUS_3                          26                            18
  CLUS_4                          42                            42
  CLUS_5                          18                            28
  CLUS_6                          37                            14
  CLUS_7                          24                            25
  CLUS_8                           0                            18
  CLUS_9                          21                            33
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q11.1) MUTATED       59    127     46
  AMP PEAK 13(8Q11.1) WILD-TYPE    130    101     47
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          59                           130
  CLUS_2                         127                           101
  CLUS_3                          46                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q11.1) MUTATED       28    102     44     58
  AMP PEAK 13(8Q11.1) WILD-TYPE     43     96     97     42
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          28                            43
  CLUS_2                         102                            96
  CLUS_3                          44                            97
  CLUS_4                          58                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q11.1) MUTATED       48    104     46
  AMP PEAK 13(8Q11.1) WILD-TYPE     97     94     45
D13V11, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          48                            97
  CLUS_2                         104                            94
  CLUS_3                          46                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q11.1) MUTATED       27    136     35
  AMP PEAK 13(8Q11.1) WILD-TYPE     76    112     48
D13V12, multiclass
        clus
vv       AMP PEAK 13(8Q11.1) MUTATED AMP PEAK 13(8Q11.1) WILD-TYPE
  CLUS_1                          27                            76
  CLUS_2                         136                           112
  CLUS_3                          35                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8Q24.21) MUTATED        4      8      4      5
  AMP PEAK 14(8Q24.21) WILD-TYPE      1      1      8      1
D14V1, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            8                              1
  CLUS_3                            4                              8
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED        6      9      6
  AMP PEAK 14(8Q24.21) WILD-TYPE      8      2      1
D14V2, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            9                              2
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED      142     98     84
  AMP PEAK 14(8Q24.21) WILD-TYPE     49    131     11
D14V3, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                          142                             49
  CLUS_2                           98                            131
  CLUS_3                           84                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8Q24.21) MUTATED       43     97     80     61
  AMP PEAK 14(8Q24.21) WILD-TYPE     53     28     28     55
D14V4, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           43                             53
  CLUS_2                           97                             28
  CLUS_3                           80                             28
  CLUS_4                           61                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED       27     49     46
  AMP PEAK 14(8Q24.21) WILD-TYPE     17     24     18
D14V5, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           27                             17
  CLUS_2                           49                             24
  CLUS_3                           46                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8Q24.21) MUTATED       27     23     33     19     20
  AMP PEAK 14(8Q24.21) WILD-TYPE     13     10     12     12     12
D14V6, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           27                             13
  CLUS_2                           23                             10
  CLUS_3                           33                             12
  CLUS_4                           19                             12
  CLUS_5                           20                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(8Q24.21) MUTATED      103     49     39     86     26
  AMP PEAK 14(8Q24.21) WILD-TYPE     35     63     37     20     28
D14V7, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                          103                             35
  CLUS_2                           49                             63
  CLUS_3                           39                             37
  CLUS_4                           86                             20
  CLUS_5                           26                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(8Q24.21) MUTATED       52     25     39     57     27     45
  AMP PEAK 14(8Q24.21) WILD-TYPE     31     32      5     27     19      6
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(8Q24.21) MUTATED       30      0     28
  AMP PEAK 14(8Q24.21) WILD-TYPE     19     18     26
D14V8, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           52                             31
  CLUS_2                           25                             32
  CLUS_3                           39                              5
  CLUS_4                           57                             27
  CLUS_5                           27                             19
  CLUS_6                           45                              6
  CLUS_7                           30                             19
  CLUS_8                            0                             18
  CLUS_9                           28                             26
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED       92    166     63
  AMP PEAK 14(8Q24.21) WILD-TYPE     97     62     30
D14V9, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           92                             97
  CLUS_2                          166                             62
  CLUS_3                           63                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(8Q24.21) MUTATED       39    140     73     69
  AMP PEAK 14(8Q24.21) WILD-TYPE     32     58     68     31
D14V10, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           39                             32
  CLUS_2                          140                             58
  CLUS_3                           73                             68
  CLUS_4                           69                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED       80    133     58
  AMP PEAK 14(8Q24.21) WILD-TYPE     65     65     33
D14V11, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           80                             65
  CLUS_2                          133                             65
  CLUS_3                           58                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(8Q24.21) MUTATED       42    176     53
  AMP PEAK 14(8Q24.21) WILD-TYPE     61     72     30
D14V12, multiclass
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  CLUS_1                           42                             61
  CLUS_2                          176                             72
  CLUS_3                           53                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10P15.1) MUTATED        0      2      0      3
  AMP PEAK 15(10P15.1) WILD-TYPE      5      7     12      3
D15V1, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            2                              7
  CLUS_3                            0                             12
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10P15.1) MUTATED        0      2      3
  AMP PEAK 15(10P15.1) WILD-TYPE     14      9      4
D15V2, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            2                              9
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10P15.1) MUTATED       59     37     45
  AMP PEAK 15(10P15.1) WILD-TYPE    132    192     50
D15V3, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           59                            132
  CLUS_2                           37                            192
  CLUS_3                           45                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10P15.1) MUTATED        8     51     39     23
  AMP PEAK 15(10P15.1) WILD-TYPE     88     74     69     93
D15V4, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                            8                             88
  CLUS_2                           51                             74
  CLUS_3                           39                             69
  CLUS_4                           23                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10P15.1) MUTATED       11     13     27
  AMP PEAK 15(10P15.1) WILD-TYPE     33     60     37
D15V5, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           13                             60
  CLUS_3                           27                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(10P15.1) MUTATED        5     13     11     11     11
  AMP PEAK 15(10P15.1) WILD-TYPE     35     20     34     20     21
D15V6, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                           13                             20
  CLUS_3                           11                             34
  CLUS_4                           11                             20
  CLUS_5                           11                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(10P15.1) MUTATED       37     17     27     45      8
  AMP PEAK 15(10P15.1) WILD-TYPE    101     95     49     61     46
D15V7, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           37                            101
  CLUS_2                           17                             95
  CLUS_3                           27                             49
  CLUS_4                           45                             61
  CLUS_5                            8                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(10P15.1) MUTATED       22      4     13     22     14     23
  AMP PEAK 15(10P15.1) WILD-TYPE     61     53     31     62     32     28
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(10P15.1) MUTATED       25      0     11
  AMP PEAK 15(10P15.1) WILD-TYPE     24     18     43
D15V8, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           22                             61
  CLUS_2                            4                             53
  CLUS_3                           13                             31
  CLUS_4                           22                             62
  CLUS_5                           14                             32
  CLUS_6                           23                             28
  CLUS_7                           25                             24
  CLUS_8                            0                             18
  CLUS_9                           11                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10P15.1) MUTATED       32     84     22
  AMP PEAK 15(10P15.1) WILD-TYPE    157    144     71
D15V9, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           32                            157
  CLUS_2                           84                            144
  CLUS_3                           22                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10P15.1) MUTATED       16     69     18     35
  AMP PEAK 15(10P15.1) WILD-TYPE     55    129    123     65
D15V10, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           16                             55
  CLUS_2                           69                            129
  CLUS_3                           18                            123
  CLUS_4                           35                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10P15.1) MUTATED       41     63     16
  AMP PEAK 15(10P15.1) WILD-TYPE    104    135     75
D15V11, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           41                            104
  CLUS_2                           63                            135
  CLUS_3                           16                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10P15.1) MUTATED       17     86     17
  AMP PEAK 15(10P15.1) WILD-TYPE     86    162     66
D15V12, multiclass
        clus
vv       AMP PEAK 15(10P15.1) MUTATED AMP PEAK 15(10P15.1) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                           86                            162
  CLUS_3                           17                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q13.3) MUTATED        2      4      2      6
  AMP PEAK 16(11Q13.3) WILD-TYPE      3      5     10      0
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            4                              5
  CLUS_3                            2                             10
  CLUS_4                            6                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED        4      3      7
  AMP PEAK 16(11Q13.3) WILD-TYPE     10      8      0
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            3                              8
  CLUS_3                            7                              0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       93     34     47
  AMP PEAK 16(11Q13.3) WILD-TYPE     98    195     48
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           93                             98
  CLUS_2                           34                            195
  CLUS_3                           47                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q13.3) MUTATED       15     56     48     30
  AMP PEAK 16(11Q13.3) WILD-TYPE     81     69     60     86
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           15                             81
  CLUS_2                           56                             69
  CLUS_3                           48                             60
  CLUS_4                           30                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED        8     29     25
  AMP PEAK 16(11Q13.3) WILD-TYPE     36     44     39
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           29                             44
  CLUS_3                           25                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       14     13     16     10      9
  AMP PEAK 16(11Q13.3) WILD-TYPE     26     20     29     21     23
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           14                             26
  CLUS_2                           13                             20
  CLUS_3                           16                             29
  CLUS_4                           10                             21
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       58     21     17     56     12
  AMP PEAK 16(11Q13.3) WILD-TYPE     80     91     59     50     42
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           58                             80
  CLUS_2                           21                             91
  CLUS_3                           17                             59
  CLUS_4                           56                             50
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       31     15     18     33      4     34
  AMP PEAK 16(11Q13.3) WILD-TYPE     52     42     26     51     42     17
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(11Q13.3) MUTATED       15      2     12
  AMP PEAK 16(11Q13.3) WILD-TYPE     34     16     42
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           31                             52
  CLUS_2                           15                             42
  CLUS_3                           18                             26
  CLUS_4                           33                             51
  CLUS_5                            4                             42
  CLUS_6                           34                             17
  CLUS_7                           15                             34
  CLUS_8                            2                             16
  CLUS_9                           12                             42
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       35    105     31
  AMP PEAK 16(11Q13.3) WILD-TYPE    154    123     62
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           35                            154
  CLUS_2                          105                            123
  CLUS_3                           31                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q13.3) MUTATED       11     83     30     47
  AMP PEAK 16(11Q13.3) WILD-TYPE     60    115    111     53
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           11                             60
  CLUS_2                           83                            115
  CLUS_3                           30                            111
  CLUS_4                           47                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       44     71     31
  AMP PEAK 16(11Q13.3) WILD-TYPE    101    127     60
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           44                            101
  CLUS_2                           71                            127
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       18     98     30
  AMP PEAK 16(11Q13.3) WILD-TYPE     85    150     53
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           98                            150
  CLUS_3                           30                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P12.1) MUTATED        1      3      2      4
  AMP PEAK 17(12P12.1) WILD-TYPE      4      6     10      2
D17V1, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P12.1) MUTATED        2      3      5
  AMP PEAK 17(12P12.1) WILD-TYPE     12      8      2
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              8
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P12.1) MUTATED       74     51     54
  AMP PEAK 17(12P12.1) WILD-TYPE    117    178     41
D17V3, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           74                            117
  CLUS_2                           51                            178
  CLUS_3                           54                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P12.1) MUTATED       10     57     43     40
  AMP PEAK 17(12P12.1) WILD-TYPE     86     68     65     76
D17V4, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           10                             86
  CLUS_2                           57                             68
  CLUS_3                           43                             65
  CLUS_4                           40                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P12.1) MUTATED        7     27     22
  AMP PEAK 17(12P12.1) WILD-TYPE     37     46     42
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                            7                             37
  CLUS_2                           27                             46
  CLUS_3                           22                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12P12.1) MUTATED       15      9     15     11      6
  AMP PEAK 17(12P12.1) WILD-TYPE     25     24     30     20     26
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                            9                             24
  CLUS_3                           15                             30
  CLUS_4                           11                             20
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12P12.1) MUTATED       55     10     38     53     16
  AMP PEAK 17(12P12.1) WILD-TYPE     83    102     38     53     38
D17V7, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           55                             83
  CLUS_2                           10                            102
  CLUS_3                           38                             38
  CLUS_4                           53                             53
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P12.1) MUTATED       28      7     21     31      5     32
  AMP PEAK 17(12P12.1) WILD-TYPE     55     50     23     53     41     19
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(12P12.1) MUTATED       28      5     15
  AMP PEAK 17(12P12.1) WILD-TYPE     21     13     39
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           28                             55
  CLUS_2                            7                             50
  CLUS_3                           21                             23
  CLUS_4                           31                             53
  CLUS_5                            5                             41
  CLUS_6                           32                             19
  CLUS_7                           28                             21
  CLUS_8                            5                             13
  CLUS_9                           15                             39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P12.1) MUTATED       44    103     29
  AMP PEAK 17(12P12.1) WILD-TYPE    145    125     64
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           44                            145
  CLUS_2                          103                            125
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P12.1) MUTATED       13     81     35     47
  AMP PEAK 17(12P12.1) WILD-TYPE     58    117    106     53
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           13                             58
  CLUS_2                           81                            117
  CLUS_3                           35                            106
  CLUS_4                           47                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P12.1) MUTATED       46     72     31
  AMP PEAK 17(12P12.1) WILD-TYPE     99    126     60
D17V11, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           46                             99
  CLUS_2                           72                            126
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P12.1) MUTATED       17    107     25
  AMP PEAK 17(12P12.1) WILD-TYPE     86    141     58
D17V12, multiclass
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                          107                            141
  CLUS_3                           25                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12Q14.1) MUTATED        1      4      2      3
  AMP PEAK 18(12Q14.1) WILD-TYPE      4      5     10      3
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            2                             10
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q14.1) MUTATED        3      3      4
  AMP PEAK 18(12Q14.1) WILD-TYPE     11      8      3
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            3                              8
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q14.1) MUTATED       67     48     55
  AMP PEAK 18(12Q14.1) WILD-TYPE    124    181     40
D18V3, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           67                            124
  CLUS_2                           48                            181
  CLUS_3                           55                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12Q14.1) MUTATED       11     63     33     38
  AMP PEAK 18(12Q14.1) WILD-TYPE     85     62     75     78
D18V4, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           11                             85
  CLUS_2                           63                             62
  CLUS_3                           33                             75
  CLUS_4                           38                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q14.1) MUTATED        9     24     20
  AMP PEAK 18(12Q14.1) WILD-TYPE     35     49     44
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           24                             49
  CLUS_3                           20                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12Q14.1) MUTATED       13     12     12     10      6
  AMP PEAK 18(12Q14.1) WILD-TYPE     27     21     33     21     26
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           13                             27
  CLUS_2                           12                             21
  CLUS_3                           12                             33
  CLUS_4                           10                             21
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12Q14.1) MUTATED       42     13     34     58     12
  AMP PEAK 18(12Q14.1) WILD-TYPE     96     99     42     48     42
D18V7, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           42                             96
  CLUS_2                           13                             99
  CLUS_3                           34                             42
  CLUS_4                           58                             48
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12Q14.1) MUTATED       18     11     18     28      6     36
  AMP PEAK 18(12Q14.1) WILD-TYPE     65     46     26     56     40     15
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(12Q14.1) MUTATED       30      2     10
  AMP PEAK 18(12Q14.1) WILD-TYPE     19     16     44
D18V8, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           18                             65
  CLUS_2                           11                             46
  CLUS_3                           18                             26
  CLUS_4                           28                             56
  CLUS_5                            6                             40
  CLUS_6                           36                             15
  CLUS_7                           30                             19
  CLUS_8                            2                             16
  CLUS_9                           10                             44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q14.1) MUTATED       34    107     27
  AMP PEAK 18(12Q14.1) WILD-TYPE    155    121     66
D18V9, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           34                            155
  CLUS_2                          107                            121
  CLUS_3                           27                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12Q14.1) MUTATED       13     79     25     51
  AMP PEAK 18(12Q14.1) WILD-TYPE     58    119    116     49
D18V10, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           13                             58
  CLUS_2                           79                            119
  CLUS_3                           25                            116
  CLUS_4                           51                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q14.1) MUTATED       41     70     32
  AMP PEAK 18(12Q14.1) WILD-TYPE    104    128     59
D18V11, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           41                            104
  CLUS_2                           70                            128
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12Q14.1) MUTATED       11    108     24
  AMP PEAK 18(12Q14.1) WILD-TYPE     92    140     59
D18V12, multiclass
        clus
vv       AMP PEAK 18(12Q14.1) MUTATED AMP PEAK 18(12Q14.1) WILD-TYPE
  CLUS_1                           11                             92
  CLUS_2                          108                            140
  CLUS_3                           24                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED        1      3      1      3
  AMP PEAK 19(12Q15) WILD-TYPE      4      6     11      3
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          3                            6
  CLUS_3                          1                           11
  CLUS_4                          3                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED        2      2      4
  AMP PEAK 19(12Q15) WILD-TYPE     12      9      3
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          2                            9
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       65     51     55
  AMP PEAK 19(12Q15) WILD-TYPE    126    178     40
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         65                          126
  CLUS_2                         51                          178
  CLUS_3                         55                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       11     64     36     35
  AMP PEAK 19(12Q15) WILD-TYPE     85     61     72     81
D19V4, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         11                           85
  CLUS_2                         64                           61
  CLUS_3                         36                           72
  CLUS_4                         35                           81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       10     28     19
  AMP PEAK 19(12Q15) WILD-TYPE     34     45     45
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         28                           45
  CLUS_3                         19                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       16     12     14     11      4
  AMP PEAK 19(12Q15) WILD-TYPE     24     21     31     20     28
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         16                           24
  CLUS_2                         12                           21
  CLUS_3                         14                           31
  CLUS_4                         11                           20
  CLUS_5                          4                           28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       41     13     35     58     12
  AMP PEAK 19(12Q15) WILD-TYPE     97     99     41     48     42
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         41                           97
  CLUS_2                         13                           99
  CLUS_3                         35                           41
  CLUS_4                         58                           48
  CLUS_5                         12                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(12Q15) MUTATED       18     11     17     28      6     36     29
  AMP PEAK 19(12Q15) WILD-TYPE     65     46     27     56     40     15     20
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 19(12Q15) MUTATED        4     10
  AMP PEAK 19(12Q15) WILD-TYPE     14     44
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         18                           65
  CLUS_2                         11                           46
  CLUS_3                         17                           27
  CLUS_4                         28                           56
  CLUS_5                          6                           40
  CLUS_6                         36                           15
  CLUS_7                         29                           20
  CLUS_8                          4                           14
  CLUS_9                         10                           44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       35    110     25
  AMP PEAK 19(12Q15) WILD-TYPE    154    118     68
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         35                          154
  CLUS_2                        110                          118
  CLUS_3                         25                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       12     77     29     52
  AMP PEAK 19(12Q15) WILD-TYPE     59    121    112     48
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         12                           59
  CLUS_2                         77                          121
  CLUS_3                         29                          112
  CLUS_4                         52                           48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       42     72     31
  AMP PEAK 19(12Q15) WILD-TYPE    103    126     60
D19V11, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         42                          103
  CLUS_2                         72                          126
  CLUS_3                         31                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       13    106     26
  AMP PEAK 19(12Q15) WILD-TYPE     90    142     57
D19V12, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         13                           90
  CLUS_2                        106                          142
  CLUS_3                         26                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(13Q33.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q33.3) MUTATED        0      1      4      1
  AMP PEAK 20(13Q33.3) WILD-TYPE      5      8      8      5
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            1                              8
  CLUS_3                            4                              8
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED        4      1      1
  AMP PEAK 20(13Q33.3) WILD-TYPE     10     10      6
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                             10
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED       36     26     15
  AMP PEAK 20(13Q33.3) WILD-TYPE    155    203     80
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           36                            155
  CLUS_2                           26                            203
  CLUS_3                           15                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q33.3) MUTATED       13     34     11      8
  AMP PEAK 20(13Q33.3) WILD-TYPE     83     91     97    108
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           13                             83
  CLUS_2                           34                             91
  CLUS_3                           11                             97
  CLUS_4                            8                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED       10      8      8
  AMP PEAK 20(13Q33.3) WILD-TYPE     34     65     56
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                            8                             65
  CLUS_3                            8                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q33.3) MUTATED        7      5      7      3      4
  AMP PEAK 20(13Q33.3) WILD-TYPE     33     28     38     28     28
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                            7                             33
  CLUS_2                            5                             28
  CLUS_3                            7                             38
  CLUS_4                            3                             28
  CLUS_5                            4                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q33.3) MUTATED       22     17     13     19      4
  AMP PEAK 20(13Q33.3) WILD-TYPE    116     95     63     87     50
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           22                            116
  CLUS_2                           17                             95
  CLUS_3                           13                             63
  CLUS_4                           19                             87
  CLUS_5                            4                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q33.3) MUTATED        8     10      4     24      8      7
  AMP PEAK 20(13Q33.3) WILD-TYPE     75     47     40     60     38     44
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(13Q33.3) MUTATED        8      0      6
  AMP PEAK 20(13Q33.3) WILD-TYPE     41     18     48
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                            8                             75
  CLUS_2                           10                             47
  CLUS_3                            4                             40
  CLUS_4                           24                             60
  CLUS_5                            8                             38
  CLUS_6                            7                             44
  CLUS_7                            8                             41
  CLUS_8                            0                             18
  CLUS_9                            6                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED       23     42     11
  AMP PEAK 20(13Q33.3) WILD-TYPE    166    186     82
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           23                            166
  CLUS_2                           42                            186
  CLUS_3                           11                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(13Q33.3) MUTATED       10     31     14     21
  AMP PEAK 20(13Q33.3) WILD-TYPE     61    167    127     79
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                           31                            167
  CLUS_3                           14                            127
  CLUS_4                           21                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED       24     31     11
  AMP PEAK 20(13Q33.3) WILD-TYPE    121    167     80
D20V11, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                           24                            121
  CLUS_2                           31                            167
  CLUS_3                           11                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q33.3) MUTATED        8     43     15
  AMP PEAK 20(13Q33.3) WILD-TYPE     95    205     68
D20V12, multiclass
        clus
vv       AMP PEAK 20(13Q33.3) MUTATED AMP PEAK 20(13Q33.3) WILD-TYPE
  CLUS_1                            8                             95
  CLUS_2                           43                            205
  CLUS_3                           15                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(14Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q13.3) MUTATED        3      4      5      4
  AMP PEAK 21(14Q13.3) WILD-TYPE      2      5      7      2
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            4                              5
  CLUS_3                            5                              7
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q13.3) MUTATED        6      5      5
  AMP PEAK 21(14Q13.3) WILD-TYPE      8      6      2
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              6
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q13.3) MUTATED      103     63     64
  AMP PEAK 21(14Q13.3) WILD-TYPE     88    166     31
D21V3, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                          103                             88
  CLUS_2                           63                            166
  CLUS_3                           64                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q13.3) MUTATED       29     77     54     38
  AMP PEAK 21(14Q13.3) WILD-TYPE     67     48     54     78
D21V4, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           29                             67
  CLUS_2                           77                             48
  CLUS_3                           54                             54
  CLUS_4                           38                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q13.3) MUTATED       13     27     33
  AMP PEAK 21(14Q13.3) WILD-TYPE     31     46     31
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           13                             31
  CLUS_2                           27                             46
  CLUS_3                           33                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q13.3) MUTATED       17     15     18     10     13
  AMP PEAK 21(14Q13.3) WILD-TYPE     23     18     27     21     19
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           17                             23
  CLUS_2                           15                             18
  CLUS_3                           18                             27
  CLUS_4                           10                             21
  CLUS_5                           13                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q13.3) MUTATED       81     39     10     74     15
  AMP PEAK 21(14Q13.3) WILD-TYPE     57     73     66     32     39
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           81                             57
  CLUS_2                           39                             73
  CLUS_3                           10                             66
  CLUS_4                           74                             32
  CLUS_5                           15                             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q13.3) MUTATED       47     25     21     55      9     40
  AMP PEAK 21(14Q13.3) WILD-TYPE     36     32     23     29     37     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(14Q13.3) MUTATED        8      0     14
  AMP PEAK 21(14Q13.3) WILD-TYPE     41     18     40
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           47                             36
  CLUS_2                           25                             32
  CLUS_3                           21                             23
  CLUS_4                           55                             29
  CLUS_5                            9                             37
  CLUS_6                           40                             11
  CLUS_7                            8                             41
  CLUS_8                            0                             18
  CLUS_9                           14                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q13.3) MUTATED       55    125     47
  AMP PEAK 21(14Q13.3) WILD-TYPE    134    103     46
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           55                            134
  CLUS_2                          125                            103
  CLUS_3                           47                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q13.3) MUTATED       28    112     34     53
  AMP PEAK 21(14Q13.3) WILD-TYPE     43     86    107     47
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           28                             43
  CLUS_2                          112                             86
  CLUS_3                           34                            107
  CLUS_4                           53                             47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q13.3) MUTATED       56     96     41
  AMP PEAK 21(14Q13.3) WILD-TYPE     89    102     50
D21V11, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           56                             89
  CLUS_2                           96                            102
  CLUS_3                           41                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q13.3) MUTATED       27    125     41
  AMP PEAK 21(14Q13.3) WILD-TYPE     76    123     42
D21V12, multiclass
        clus
vv       AMP PEAK 21(14Q13.3) MUTATED AMP PEAK 21(14Q13.3) WILD-TYPE
  CLUS_1                           27                             76
  CLUS_2                          125                            123
  CLUS_3                           41                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(16P11.2) MUTATED        3      5      5      2
  AMP PEAK 22(16P11.2) WILD-TYPE      2      4      7      4
D22V1, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(16P11.2) MUTATED        6      7      2
  AMP PEAK 22(16P11.2) WILD-TYPE      8      4      5
D22V2, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            7                              4
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(16P11.2) MUTATED       85     49     34
  AMP PEAK 22(16P11.2) WILD-TYPE    106    180     61
D22V3, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           85                            106
  CLUS_2                           49                            180
  CLUS_3                           34                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(16P11.2) MUTATED       33     49     38     23
  AMP PEAK 22(16P11.2) WILD-TYPE     63     76     70     93
D22V4, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           33                             63
  CLUS_2                           49                             76
  CLUS_3                           38                             70
  CLUS_4                           23                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(16P11.2) MUTATED       11     31     21
  AMP PEAK 22(16P11.2) WILD-TYPE     33     42     43
D22V5, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           31                             42
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(16P11.2) MUTATED       19     10     17     10      7
  AMP PEAK 22(16P11.2) WILD-TYPE     21     23     28     21     25
D22V6, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           19                             21
  CLUS_2                           10                             23
  CLUS_3                           17                             28
  CLUS_4                           10                             21
  CLUS_5                            7                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(16P11.2) MUTATED       52     34     19     32     20
  AMP PEAK 22(16P11.2) WILD-TYPE     86     78     57     74     34
D22V7, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           52                             86
  CLUS_2                           34                             78
  CLUS_3                           19                             57
  CLUS_4                           32                             74
  CLUS_5                           20                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(16P11.2) MUTATED       29     25     17     31      9     17
  AMP PEAK 22(16P11.2) WILD-TYPE     54     32     27     53     37     34
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(16P11.2) MUTATED       11      2     16
  AMP PEAK 22(16P11.2) WILD-TYPE     38     16     38
D22V8, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           29                             54
  CLUS_2                           25                             32
  CLUS_3                           17                             27
  CLUS_4                           31                             53
  CLUS_5                            9                             37
  CLUS_6                           17                             34
  CLUS_7                           11                             38
  CLUS_8                            2                             16
  CLUS_9                           16                             38
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(16P11.2) MUTATED       49     82     36
  AMP PEAK 22(16P11.2) WILD-TYPE    140    146     57
D22V9, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           49                            140
  CLUS_2                           82                            146
  CLUS_3                           36                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(16P11.2) MUTATED       17     76     41     33
  AMP PEAK 22(16P11.2) WILD-TYPE     54    122    100     67
D22V10, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           76                            122
  CLUS_3                           41                            100
  CLUS_4                           33                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(16P11.2) MUTATED       51     57     31
  AMP PEAK 22(16P11.2) WILD-TYPE     94    141     60
D22V11, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           51                             94
  CLUS_2                           57                            141
  CLUS_3                           31                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(16P11.2) MUTATED       28     78     33
  AMP PEAK 22(16P11.2) WILD-TYPE     75    170     50
D22V12, multiclass
        clus
vv       AMP PEAK 22(16P11.2) MUTATED AMP PEAK 22(16P11.2) WILD-TYPE
  CLUS_1                           28                             75
  CLUS_2                           78                            170
  CLUS_3                           33                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q12) MUTATED        3      6      3      5
  AMP PEAK 23(17Q12) WILD-TYPE      2      3      9      1
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          6                            3
  CLUS_3                          3                            9
  CLUS_4                          5                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED        4      7      6
  AMP PEAK 23(17Q12) WILD-TYPE     10      4      1
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          7                            4
  CLUS_3                          6                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED      122     52     53
  AMP PEAK 23(17Q12) WILD-TYPE     69    177     42
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                        122                           69
  CLUS_2                         52                          177
  CLUS_3                         53                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q12) MUTATED       20     68     61     40
  AMP PEAK 23(17Q12) WILD-TYPE     76     57     47     76
D23V4, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         20                           76
  CLUS_2                         68                           57
  CLUS_3                         61                           47
  CLUS_4                         40                           76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       16     37     27
  AMP PEAK 23(17Q12) WILD-TYPE     28     36     37
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         16                           28
  CLUS_2                         37                           36
  CLUS_3                         27                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       23     11     26     11      9
  AMP PEAK 23(17Q12) WILD-TYPE     17     22     19     20     23
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         23                           17
  CLUS_2                         11                           22
  CLUS_3                         26                           19
  CLUS_4                         11                           20
  CLUS_5                          9                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       84     30     24     57     20
  AMP PEAK 23(17Q12) WILD-TYPE     54     82     52     49     34
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         84                           54
  CLUS_2                         30                           82
  CLUS_3                         24                           52
  CLUS_4                         57                           49
  CLUS_5                         20                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED       43     20     26     51      8     28     19
  AMP PEAK 23(17Q12) WILD-TYPE     40     37     18     33     38     23     30
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 23(17Q12) MUTATED        1     19
  AMP PEAK 23(17Q12) WILD-TYPE     17     35
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         43                           40
  CLUS_2                         20                           37
  CLUS_3                         26                           18
  CLUS_4                         51                           33
  CLUS_5                          8                           38
  CLUS_6                         28                           23
  CLUS_7                         19                           30
  CLUS_8                          1                           17
  CLUS_9                         19                           35
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       58    129     38
  AMP PEAK 23(17Q12) WILD-TYPE    131     99     55
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         58                          131
  CLUS_2                        129                           99
  CLUS_3                         38                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q12) MUTATED       21    103     40     61
  AMP PEAK 23(17Q12) WILD-TYPE     50     95    101     39
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         21                           50
  CLUS_2                        103                           95
  CLUS_3                         40                          101
  CLUS_4                         61                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       57     89     41
  AMP PEAK 23(17Q12) WILD-TYPE     88    109     50
D23V11, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         57                           88
  CLUS_2                         89                          109
  CLUS_3                         41                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       24    125     38
  AMP PEAK 23(17Q12) WILD-TYPE     79    123     45
D23V12, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         24                           79
  CLUS_2                        125                          123
  CLUS_3                         38                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q23.1) MUTATED        3      8      4      4
  AMP PEAK 24(17Q23.1) WILD-TYPE      2      1      8      2
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            8                              1
  CLUS_3                            4                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED        6      8      5
  AMP PEAK 24(17Q23.1) WILD-TYPE      8      3      2
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            8                              3
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED      130     64     55
  AMP PEAK 24(17Q23.1) WILD-TYPE     61    165     40
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                          130                             61
  CLUS_2                           64                            165
  CLUS_3                           55                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q23.1) MUTATED       22     68     74     46
  AMP PEAK 24(17Q23.1) WILD-TYPE     74     57     34     70
D24V4, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           22                             74
  CLUS_2                           68                             57
  CLUS_3                           74                             34
  CLUS_4                           46                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       16     38     31
  AMP PEAK 24(17Q23.1) WILD-TYPE     28     35     33
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           38                             35
  CLUS_3                           31                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       24     11     26     12     12
  AMP PEAK 24(17Q23.1) WILD-TYPE     16     22     19     19     20
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           24                             16
  CLUS_2                           11                             22
  CLUS_3                           26                             19
  CLUS_4                           12                             19
  CLUS_5                           12                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       95     37     30     54     21
  AMP PEAK 24(17Q23.1) WILD-TYPE     43     75     46     52     33
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           95                             43
  CLUS_2                           37                             75
  CLUS_3                           30                             46
  CLUS_4                           54                             52
  CLUS_5                           21                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       52     25     30     49      7     28
  AMP PEAK 24(17Q23.1) WILD-TYPE     31     32     14     35     39     23
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 24(17Q23.1) MUTATED       24      0     22
  AMP PEAK 24(17Q23.1) WILD-TYPE     25     18     32
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           52                             31
  CLUS_2                           25                             32
  CLUS_3                           30                             14
  CLUS_4                           49                             35
  CLUS_5                            7                             39
  CLUS_6                           28                             23
  CLUS_7                           24                             25
  CLUS_8                            0                             18
  CLUS_9                           22                             32
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       68    136     43
  AMP PEAK 24(17Q23.1) WILD-TYPE    121     92     50
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           68                            121
  CLUS_2                          136                             92
  CLUS_3                           43                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(17Q23.1) MUTATED       26    111     48     62
  AMP PEAK 24(17Q23.1) WILD-TYPE     45     87     93     38
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           26                             45
  CLUS_2                          111                             87
  CLUS_3                           48                             93
  CLUS_4                           62                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       65     94     46
  AMP PEAK 24(17Q23.1) WILD-TYPE     80    104     45
D24V11, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           65                             80
  CLUS_2                           94                            104
  CLUS_3                           46                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       28    134     43
  AMP PEAK 24(17Q23.1) WILD-TYPE     75    114     40
D24V12, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           28                             75
  CLUS_2                          134                            114
  CLUS_3                           43                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18Q11.2) MUTATED        1      1      1      3
  AMP PEAK 25(18Q11.2) WILD-TYPE      4      8     11      3
D25V1, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            1                              8
  CLUS_3                            1                             11
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED        1      1      4
  AMP PEAK 25(18Q11.2) WILD-TYPE     13     10      3
D25V2, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             10
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       44     31     29
  AMP PEAK 25(18Q11.2) WILD-TYPE    147    198     66
D25V3, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           44                            147
  CLUS_2                           31                            198
  CLUS_3                           29                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18Q11.2) MUTATED        6     51     23     14
  AMP PEAK 25(18Q11.2) WILD-TYPE     90     74     85    102
D25V4, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            6                             90
  CLUS_2                           51                             74
  CLUS_3                           23                             85
  CLUS_4                           14                            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED        6     12     19
  AMP PEAK 25(18Q11.2) WILD-TYPE     38     61     45
D25V5, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            6                             38
  CLUS_2                           12                             61
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(18Q11.2) MUTATED        5      6      9     11      6
  AMP PEAK 25(18Q11.2) WILD-TYPE     35     27     36     20     26
D25V6, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                            6                             27
  CLUS_3                            9                             36
  CLUS_4                           11                             20
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(18Q11.2) MUTATED       24     12     19     37      6
  AMP PEAK 25(18Q11.2) WILD-TYPE    114    100     57     69     48
D25V7, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           24                            114
  CLUS_2                           12                            100
  CLUS_3                           19                             57
  CLUS_4                           37                             69
  CLUS_5                            6                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(18Q11.2) MUTATED       12      5      7     27      6     21
  AMP PEAK 25(18Q11.2) WILD-TYPE     71     52     37     57     40     30
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 25(18Q11.2) MUTATED       10      4      6
  AMP PEAK 25(18Q11.2) WILD-TYPE     39     14     48
D25V8, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           12                             71
  CLUS_2                            5                             52
  CLUS_3                            7                             37
  CLUS_4                           27                             57
  CLUS_5                            6                             40
  CLUS_6                           21                             30
  CLUS_7                           10                             39
  CLUS_8                            4                             14
  CLUS_9                            6                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       21     62     20
  AMP PEAK 25(18Q11.2) WILD-TYPE    168    166     73
D25V9, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           21                            168
  CLUS_2                           62                            166
  CLUS_3                           20                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(18Q11.2) MUTATED        6     43     19     35
  AMP PEAK 25(18Q11.2) WILD-TYPE     65    155    122     65
D25V10, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                           43                            155
  CLUS_3                           19                            122
  CLUS_4                           35                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       29     47     16
  AMP PEAK 25(18Q11.2) WILD-TYPE    116    151     75
D25V11, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           29                            116
  CLUS_2                           47                            151
  CLUS_3                           16                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(18Q11.2) MUTATED       10     70     12
  AMP PEAK 25(18Q11.2) WILD-TYPE     93    178     71
D25V12, multiclass
        clus
vv       AMP PEAK 25(18Q11.2) MUTATED AMP PEAK 25(18Q11.2) WILD-TYPE
  CLUS_1                           10                             93
  CLUS_2                           70                            178
  CLUS_3                           12                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED        1      4      0      2
  AMP PEAK 26(19Q12) WILD-TYPE      4      5     12      4
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          4                            5
  CLUS_3                          0                           12
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED        0      5      2
  AMP PEAK 26(19Q12) WILD-TYPE     14      6      5
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          5                            6
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       56     43     40
  AMP PEAK 26(19Q12) WILD-TYPE    135    186     55
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         56                          135
  CLUS_2                         43                          186
  CLUS_3                         40                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       15     56     22     31
  AMP PEAK 26(19Q12) WILD-TYPE     81     69     86     85
D26V4, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         15                           81
  CLUS_2                         56                           69
  CLUS_3                         22                           86
  CLUS_4                         31                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED        8     18     15
  AMP PEAK 26(19Q12) WILD-TYPE     36     55     49
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          8                           36
  CLUS_2                         18                           55
  CLUS_3                         15                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED        6      6     15      7      7
  AMP PEAK 26(19Q12) WILD-TYPE     34     27     30     24     25
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          6                           34
  CLUS_2                          6                           27
  CLUS_3                         15                           30
  CLUS_4                          7                           24
  CLUS_5                          7                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       38     17     28     40      8
  AMP PEAK 26(19Q12) WILD-TYPE    100     95     48     66     46
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         38                          100
  CLUS_2                         17                           95
  CLUS_3                         28                           48
  CLUS_4                         40                           66
  CLUS_5                          8                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(19Q12) MUTATED       18      5     14     32     12     17     23
  AMP PEAK 26(19Q12) WILD-TYPE     65     52     30     52     34     34     26
                              vv
clus                           CLUS_8 CLUS_9
  AMP PEAK 26(19Q12) MUTATED        1      9
  AMP PEAK 26(19Q12) WILD-TYPE     17     45
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         18                           65
  CLUS_2                          5                           52
  CLUS_3                         14                           30
  CLUS_4                         32                           52
  CLUS_5                         12                           34
  CLUS_6                         17                           34
  CLUS_7                         23                           26
  CLUS_8                          1                           17
  CLUS_9                          9                           45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       30     86     23
  AMP PEAK 26(19Q12) WILD-TYPE    159    142     70
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         30                          159
  CLUS_2                         86                          142
  CLUS_3                         23                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       14     61     24     40
  AMP PEAK 26(19Q12) WILD-TYPE     57    137    117     60
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         14                           57
  CLUS_2                         61                          137
  CLUS_3                         24                          117
  CLUS_4                         40                           60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       32     66     23
  AMP PEAK 26(19Q12) WILD-TYPE    113    132     68
D26V11, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         32                          113
  CLUS_2                         66                          132
  CLUS_3                         23                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       19     89     13
  AMP PEAK 26(19Q12) WILD-TYPE     84    159     70
D26V12, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         19                           84
  CLUS_2                         89                          159
  CLUS_3                         13                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.33) MUTATED        2      5      2      6
  AMP PEAK 27(20Q13.33) WILD-TYPE      3      4     10      0
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             5                               4
  CLUS_3                             2                              10
  CLUS_4                             6                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED        4      5      6
  AMP PEAK 27(20Q13.33) WILD-TYPE     10      6      1
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             5                               6
  CLUS_3                             6                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED      106     79     65
  AMP PEAK 27(20Q13.33) WILD-TYPE     85    150     30
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                           106                              85
  CLUS_2                            79                             150
  CLUS_3                            65                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.33) MUTATED       36     83     48     45
  AMP PEAK 27(20Q13.33) WILD-TYPE     60     42     60     71
D27V4, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            36                              60
  CLUS_2                            83                              42
  CLUS_3                            48                              60
  CLUS_4                            45                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       15     39     37
  AMP PEAK 27(20Q13.33) WILD-TYPE     29     34     27
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            15                              29
  CLUS_2                            39                              34
  CLUS_3                            37                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.33) MUTATED       21     17     26     16     11
  AMP PEAK 27(20Q13.33) WILD-TYPE     19     16     19     15     21
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            21                              19
  CLUS_2                            17                              16
  CLUS_3                            26                              19
  CLUS_4                            16                              15
  CLUS_5                            11                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(20Q13.33) MUTATED       71     41     27     75     19
  AMP PEAK 27(20Q13.33) WILD-TYPE     67     71     49     31     35
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            71                              67
  CLUS_2                            41                              71
  CLUS_3                            27                              49
  CLUS_4                            75                              31
  CLUS_5                            19                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(20Q13.33) MUTATED       34     21     28     56     21     36
  AMP PEAK 27(20Q13.33) WILD-TYPE     49     36     16     28     25     15
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 27(20Q13.33) MUTATED       17      2     18
  AMP PEAK 27(20Q13.33) WILD-TYPE     32     16     36
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            34                              49
  CLUS_2                            21                              36
  CLUS_3                            28                              16
  CLUS_4                            56                              28
  CLUS_5                            21                              25
  CLUS_6                            36                              15
  CLUS_7                            17                              32
  CLUS_8                             2                              16
  CLUS_9                            18                              36
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       66    138     42
  AMP PEAK 27(20Q13.33) WILD-TYPE    123     90     51
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            66                             123
  CLUS_2                           138                              90
  CLUS_3                            42                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(20Q13.33) MUTATED       24    106     53     63
  AMP PEAK 27(20Q13.33) WILD-TYPE     47     92     88     37
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            24                              47
  CLUS_2                           106                              92
  CLUS_3                            53                              88
  CLUS_4                            63                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       59    106     42
  AMP PEAK 27(20Q13.33) WILD-TYPE     86     92     49
D27V11, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            59                              86
  CLUS_2                           106                              92
  CLUS_3                            42                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(20Q13.33) MUTATED       30    140     37
  AMP PEAK 27(20Q13.33) WILD-TYPE     73    108     46
D27V12, multiclass
        clus
vv       AMP PEAK 27(20Q13.33) MUTATED AMP PEAK 27(20Q13.33) WILD-TYPE
  CLUS_1                            30                              73
  CLUS_2                           140                             108
  CLUS_3                            37                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(22Q11.22) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(22Q11.22) MUTATED        1      2      1      3
  AMP PEAK 28(22Q11.22) WILD-TYPE      4      7     11      3
D28V1, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             2                               7
  CLUS_3                             1                              11
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED        1      3      3
  AMP PEAK 28(22Q11.22) WILD-TYPE     13      8      4
D28V2, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             3                               8
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       54     23     13
  AMP PEAK 28(22Q11.22) WILD-TYPE    137    206     82
D28V3, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            54                             137
  CLUS_2                            23                             206
  CLUS_3                            13                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(22Q11.22) MUTATED       13     28     17     21
  AMP PEAK 28(22Q11.22) WILD-TYPE     83     97     91     95
D28V4, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            13                              83
  CLUS_2                            28                              97
  CLUS_3                            17                              91
  CLUS_4                            21                              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED        3     21     14
  AMP PEAK 28(22Q11.22) WILD-TYPE     41     52     50
D28V5, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                             3                              41
  CLUS_2                            21                              52
  CLUS_3                            14                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(22Q11.22) MUTATED       11      6     13      5      3
  AMP PEAK 28(22Q11.22) WILD-TYPE     29     27     32     26     29
D28V6, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            11                              29
  CLUS_2                             6                              27
  CLUS_3                            13                              32
  CLUS_4                             5                              26
  CLUS_5                             3                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(22Q11.22) MUTATED       26     14     13     21     11
  AMP PEAK 28(22Q11.22) WILD-TYPE    112     98     63     85     43
D28V7, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            26                             112
  CLUS_2                            14                              98
  CLUS_3                            13                              63
  CLUS_4                            21                              85
  CLUS_5                            11                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(22Q11.22) MUTATED       12      6     11     24      4      9
  AMP PEAK 28(22Q11.22) WILD-TYPE     71     51     33     60     42     42
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 28(22Q11.22) MUTATED        9      1      9
  AMP PEAK 28(22Q11.22) WILD-TYPE     40     17     45
D28V8, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            12                              71
  CLUS_2                             6                              51
  CLUS_3                            11                              33
  CLUS_4                            24                              60
  CLUS_5                             4                              42
  CLUS_6                             9                              42
  CLUS_7                             9                              40
  CLUS_8                             1                              17
  CLUS_9                             9                              45
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       23     48     19
  AMP PEAK 28(22Q11.22) WILD-TYPE    166    180     74
D28V9, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            23                             166
  CLUS_2                            48                             180
  CLUS_3                            19                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(22Q11.22) MUTATED       11     34     18     27
  AMP PEAK 28(22Q11.22) WILD-TYPE     60    164    123     73
D28V10, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            11                              60
  CLUS_2                            34                             164
  CLUS_3                            18                             123
  CLUS_4                            27                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       23     38     17
  AMP PEAK 28(22Q11.22) WILD-TYPE    122    160     74
D28V11, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            23                             122
  CLUS_2                            38                             160
  CLUS_3                            17                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(22Q11.22) MUTATED       10     55     13
  AMP PEAK 28(22Q11.22) WILD-TYPE     93    193     70
D28V12, multiclass
        clus
vv       AMP PEAK 28(22Q11.22) MUTATED AMP PEAK 28(22Q11.22) WILD-TYPE
  CLUS_1                            10                              93
  CLUS_2                            55                             193
  CLUS_3                            13                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED        3      3      3      4
  AMP PEAK 29(XQ28) WILD-TYPE      2      6      9      2
D29V1, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         3                           6
  CLUS_3                         3                           9
  CLUS_4                         4                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED        4      4      5
  AMP PEAK 29(XQ28) WILD-TYPE     10      7      2
D29V2, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         4                           7
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       94     34     30
  AMP PEAK 29(XQ28) WILD-TYPE     97    195     65
D29V3, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        94                          97
  CLUS_2                        34                         195
  CLUS_3                        30                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       16     47     44     25
  AMP PEAK 29(XQ28) WILD-TYPE     80     78     64     91
D29V4, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        16                          80
  CLUS_2                        47                          78
  CLUS_3                        44                          64
  CLUS_4                        25                          91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       10     20     23
  AMP PEAK 29(XQ28) WILD-TYPE     34     53     41
D29V5, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        10                          34
  CLUS_2                        20                          53
  CLUS_3                        23                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       12      6     16     10      9
  AMP PEAK 29(XQ28) WILD-TYPE     28     27     29     21     23
D29V6, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        12                          28
  CLUS_2                         6                          27
  CLUS_3                        16                          29
  CLUS_4                        10                          21
  CLUS_5                         9                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ28) MUTATED       65     23     17     32     12
  AMP PEAK 29(XQ28) WILD-TYPE     73     89     59     74     42
D29V7, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        65                          73
  CLUS_2                        23                          89
  CLUS_3                        17                          59
  CLUS_4                        32                          74
  CLUS_5                        12                          42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 29(XQ28) MUTATED       32     13     23     34      6     13     13
  AMP PEAK 29(XQ28) WILD-TYPE     51     44     21     50     40     38     36
                             vv
clus                          CLUS_8 CLUS_9
  AMP PEAK 29(XQ28) MUTATED        0     15
  AMP PEAK 29(XQ28) WILD-TYPE     18     39
D29V8, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        32                          51
  CLUS_2                        13                          44
  CLUS_3                        23                          21
  CLUS_4                        34                          50
  CLUS_5                         6                          40
  CLUS_6                        13                          38
  CLUS_7                        13                          36
  CLUS_8                         0                          18
  CLUS_9                        15                          39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       44     75     37
  AMP PEAK 29(XQ28) WILD-TYPE    145    153     56
D29V9, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        44                         145
  CLUS_2                        75                         153
  CLUS_3                        37                          56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(XQ28) MUTATED       17     71     35     33
  AMP PEAK 29(XQ28) WILD-TYPE     54    127    106     67
D29V10, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        17                          54
  CLUS_2                        71                         127
  CLUS_3                        35                         106
  CLUS_4                        33                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       45     53     33
  AMP PEAK 29(XQ28) WILD-TYPE    100    145     58
D29V11, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        45                         100
  CLUS_2                        53                         145
  CLUS_3                        33                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ28) MUTATED       16     85     30
  AMP PEAK 29(XQ28) WILD-TYPE     87    163     53
D29V12, multiclass
        clus
vv       AMP PEAK 29(XQ28) MUTATED AMP PEAK 29(XQ28) WILD-TYPE
  CLUS_1                        16                          87
  CLUS_2                        85                         163
  CLUS_3                        30                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED        1      3      2      2
  DEL PEAK  1(1P36.13) WILD-TYPE      4      6     10      4
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED        2      3      3
  DEL PEAK  1(1P36.13) WILD-TYPE     12      8      4
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              8
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       30     45     45
  DEL PEAK  1(1P36.13) WILD-TYPE    161    184     50
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           30                            161
  CLUS_2                           45                            184
  CLUS_3                           45                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED       14     41     27     18
  DEL PEAK  1(1P36.13) WILD-TYPE     82     84     81     98
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           14                             82
  CLUS_2                           41                             84
  CLUS_3                           27                             81
  CLUS_4                           18                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED        9     19     18
  DEL PEAK  1(1P36.13) WILD-TYPE     35     54     46
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            9                             35
  CLUS_2                           19                             54
  CLUS_3                           18                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED        6     12     12     11      5
  DEL PEAK  1(1P36.13) WILD-TYPE     34     21     33     20     27
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            6                             34
  CLUS_2                           12                             21
  CLUS_3                           12                             33
  CLUS_4                           11                             20
  CLUS_5                            5                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       31     15     23     38      5
  DEL PEAK  1(1P36.13) WILD-TYPE    107     97     53     68     49
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           31                            107
  CLUS_2                           15                             97
  CLUS_3                           23                             53
  CLUS_4                           38                             68
  CLUS_5                            5                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       12      9     15     17     11     25
  DEL PEAK  1(1P36.13) WILD-TYPE     71     48     29     67     35     26
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.13) MUTATED       17      2      4
  DEL PEAK  1(1P36.13) WILD-TYPE     32     16     50
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           12                             71
  CLUS_2                            9                             48
  CLUS_3                           15                             29
  CLUS_4                           17                             67
  CLUS_5                           11                             35
  CLUS_6                           25                             26
  CLUS_7                           17                             32
  CLUS_8                            2                             16
  CLUS_9                            4                             50
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       39     65     13
  DEL PEAK  1(1P36.13) WILD-TYPE    150    163     80
D30V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           39                            150
  CLUS_2                           65                            163
  CLUS_3                           13                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.13) MUTATED       18     53     23     23
  DEL PEAK  1(1P36.13) WILD-TYPE     53    145    118     77
D30V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           18                             53
  CLUS_2                           53                            145
  CLUS_3                           23                            118
  CLUS_4                           23                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       29     56     12
  DEL PEAK  1(1P36.13) WILD-TYPE    116    142     79
D30V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           29                            116
  CLUS_2                           56                            142
  CLUS_3                           12                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       18     67     12
  DEL PEAK  1(1P36.13) WILD-TYPE     85    181     71
D30V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           67                            181
  CLUS_3                           12                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED        1      4      3      3
  DEL PEAK  2(1P13.1) WILD-TYPE      4      5      9      3
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           4                             5
  CLUS_3                           3                             9
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        3      5      3
  DEL PEAK  2(1P13.1) WILD-TYPE     11      6      4
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           5                             6
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       49     47     55
  DEL PEAK  2(1P13.1) WILD-TYPE    142    182     40
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          49                           142
  CLUS_2                          47                           182
  CLUS_3                          55                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       28     43     35     16
  DEL PEAK  2(1P13.1) WILD-TYPE     68     82     73    100
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          28                            68
  CLUS_2                          43                            82
  CLUS_3                          35                            73
  CLUS_4                          16                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       12     17     25
  DEL PEAK  2(1P13.1) WILD-TYPE     32     56     39
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          12                            32
  CLUS_2                          17                            56
  CLUS_3                          25                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED        7     16     14     10      7
  DEL PEAK  2(1P13.1) WILD-TYPE     33     17     31     21     25
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           7                            33
  CLUS_2                          16                            17
  CLUS_3                          14                            31
  CLUS_4                          10                            21
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED       34     26     23     50     10
  DEL PEAK  2(1P13.1) WILD-TYPE    104     86     53     56     44
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          34                           104
  CLUS_2                          26                            86
  CLUS_3                          23                            53
  CLUS_4                          50                            56
  CLUS_5                          10                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.1) MUTATED       18     15     15     22     20     27
  DEL PEAK  2(1P13.1) WILD-TYPE     65     42     29     62     26     24
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  2(1P13.1) MUTATED       16      2      8
  DEL PEAK  2(1P13.1) WILD-TYPE     33     16     46
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          18                            65
  CLUS_2                          15                            42
  CLUS_3                          15                            29
  CLUS_4                          22                            62
  CLUS_5                          20                            26
  CLUS_6                          27                            24
  CLUS_7                          16                            33
  CLUS_8                           2                            16
  CLUS_9                           8                            46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       46     75     27
  DEL PEAK  2(1P13.1) WILD-TYPE    143    153     66
D31V9, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          46                           143
  CLUS_2                          75                           153
  CLUS_3                          27                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.1) MUTATED       15     75     29     29
  DEL PEAK  2(1P13.1) WILD-TYPE     56    123    112     71
D31V10, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          15                            56
  CLUS_2                          75                           123
  CLUS_3                          29                           112
  CLUS_4                          29                            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       37     56     24
  DEL PEAK  2(1P13.1) WILD-TYPE    108    142     67
D31V11, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          37                           108
  CLUS_2                          56                           142
  CLUS_3                          24                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED       27     70     20
  DEL PEAK  2(1P13.1) WILD-TYPE     76    178     63
D31V12, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                          27                            76
  CLUS_2                          70                           178
  CLUS_3                          20                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        0      1      2      0
  DEL PEAK  3(2Q22.1) WILD-TYPE      5      8     10      6
D32V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        2      1      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     12     10      7
D32V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           1                            10
  CLUS_3                           0                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       23      8     14
  DEL PEAK  3(2Q22.1) WILD-TYPE    168    221     81
D32V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          23                           168
  CLUS_2                           8                           221
  CLUS_3                          14                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        6     19      9      4
  DEL PEAK  3(2Q22.1) WILD-TYPE     90    106     99    112
D32V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            90
  CLUS_2                          19                           106
  CLUS_3                           9                            99
  CLUS_4                           4                           112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        1      6      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     43     67     56
D32V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                            43
  CLUS_2                           6                            67
  CLUS_3                           8                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED        1      3      6      3      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     39     30     39     28     30
D32V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           3                            30
  CLUS_3                           6                            39
  CLUS_4                           3                            28
  CLUS_5                           2                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q22.1) MUTATED       10      7     11     15      1
  DEL PEAK  3(2Q22.1) WILD-TYPE    128    105     65     91     53
D32V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          10                           128
  CLUS_2                           7                           105
  CLUS_3                          11                            65
  CLUS_4                          15                            91
  CLUS_5                           1                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        5      6      3     10      2      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     78     51     41     74     44     43
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(2Q22.1) MUTATED       10      0      0
  DEL PEAK  3(2Q22.1) WILD-TYPE     39     18     54
D32V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           5                            78
  CLUS_2                           6                            51
  CLUS_3                           3                            41
  CLUS_4                          10                            74
  CLUS_5                           2                            44
  CLUS_6                           8                            43
  CLUS_7                          10                            39
  CLUS_8                           0                            18
  CLUS_9                           0                            54
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        8     26     10
  DEL PEAK  3(2Q22.1) WILD-TYPE    181    202     83
D32V9, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                           181
  CLUS_2                          26                           202
  CLUS_3                          10                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED        3     18      6     17
  DEL PEAK  3(2Q22.1) WILD-TYPE     68    180    135     83
D32V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            68
  CLUS_2                          18                           180
  CLUS_3                           6                           135
  CLUS_4                          17                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       13     16      7
  DEL PEAK  3(2Q22.1) WILD-TYPE    132    182     84
D32V11, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          13                           132
  CLUS_2                          16                           182
  CLUS_3                           7                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        3     27      6
  DEL PEAK  3(2Q22.1) WILD-TYPE    100    221     77
D32V12, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                           100
  CLUS_2                          27                           221
  CLUS_3                           6                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED        1      4      3      5
  DEL PEAK  4(3P26.2) WILD-TYPE      4      5      9      1
D33V1, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           4                             5
  CLUS_3                           3                             9
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED        5      3      5
  DEL PEAK  4(3P26.2) WILD-TYPE      9      8      2
D33V2, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           3                             8
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED      103     76     53
  DEL PEAK  4(3P26.2) WILD-TYPE     88    153     42
D33V3, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                         103                            88
  CLUS_2                          76                           153
  CLUS_3                          53                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED       36     76     41     47
  DEL PEAK  4(3P26.2) WILD-TYPE     60     49     67     69
D33V4, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          36                            60
  CLUS_2                          76                            49
  CLUS_3                          41                            67
  CLUS_4                          47                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       16     34     38
  DEL PEAK  4(3P26.2) WILD-TYPE     28     39     26
D33V5, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          16                            28
  CLUS_2                          34                            39
  CLUS_3                          38                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P26.2) MUTATED       19     12     25     18     14
  DEL PEAK  4(3P26.2) WILD-TYPE     21     21     20     13     18
D33V6, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          19                            21
  CLUS_2                          12                            21
  CLUS_3                          25                            20
  CLUS_4                          18                            13
  CLUS_5                          14                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P26.2) MUTATED       60     43     34     60     23
  DEL PEAK  4(3P26.2) WILD-TYPE     78     69     42     46     31
D33V7, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          60                            78
  CLUS_2                          43                            69
  CLUS_3                          34                            42
  CLUS_4                          60                            46
  CLUS_5                          23                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P26.2) MUTATED       28     24     17     57     13     35
  DEL PEAK  4(3P26.2) WILD-TYPE     55     33     27     27     33     16
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  4(3P26.2) MUTATED       28      0     18
  DEL PEAK  4(3P26.2) WILD-TYPE     21     18     36
D33V8, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          28                            55
  CLUS_2                          24                            33
  CLUS_3                          17                            27
  CLUS_4                          57                            27
  CLUS_5                          13                            33
  CLUS_6                          35                            16
  CLUS_7                          28                            21
  CLUS_8                           0                            18
  CLUS_9                          18                            36
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       60    115     53
  DEL PEAK  4(3P26.2) WILD-TYPE    129    113     40
D33V9, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          60                           129
  CLUS_2                         115                           113
  CLUS_3                          53                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P26.2) MUTATED       30     85     49     64
  DEL PEAK  4(3P26.2) WILD-TYPE     41    113     92     36
D33V10, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          30                            41
  CLUS_2                          85                           113
  CLUS_3                          49                            92
  CLUS_4                          64                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       66     93     39
  DEL PEAK  4(3P26.2) WILD-TYPE     79    105     52
D33V11, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          66                            79
  CLUS_2                          93                           105
  CLUS_3                          39                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P26.2) MUTATED       30    131     37
  DEL PEAK  4(3P26.2) WILD-TYPE     73    117     46
D33V12, multiclass
        clus
vv       DEL PEAK  4(3P26.2) MUTATED DEL PEAK  4(3P26.2) WILD-TYPE
  CLUS_1                          30                            73
  CLUS_2                         131                           117
  CLUS_3                          37                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        1      6      3      4
  DEL PEAK  5(3P21.31) WILD-TYPE      4      3      9      2
D34V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            6                              3
  CLUS_3                            3                              9
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        4      6      4
  DEL PEAK  5(3P21.31) WILD-TYPE     10      5      3
D34V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                              5
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED      110     78     59
  DEL PEAK  5(3P21.31) WILD-TYPE     81    151     36
D34V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                          110                             81
  CLUS_2                           78                            151
  CLUS_3                           59                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       37     85     45     47
  DEL PEAK  5(3P21.31) WILD-TYPE     59     40     63     69
D34V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           37                             59
  CLUS_2                           85                             40
  CLUS_3                           45                             63
  CLUS_4                           47                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       15     36     38
  DEL PEAK  5(3P21.31) WILD-TYPE     29     37     26
D34V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           15                             29
  CLUS_2                           36                             37
  CLUS_3                           38                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       19     11     26     18     15
  DEL PEAK  5(3P21.31) WILD-TYPE     21     22     19     13     17
D34V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           19                             21
  CLUS_2                           11                             22
  CLUS_3                           26                             19
  CLUS_4                           18                             13
  CLUS_5                           15                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       63     43     37     65     25
  DEL PEAK  5(3P21.31) WILD-TYPE     75     69     39     41     29
D34V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           63                             75
  CLUS_2                           43                             69
  CLUS_3                           37                             39
  CLUS_4                           65                             41
  CLUS_5                           25                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       28     25     19     61     13     37
  DEL PEAK  5(3P21.31) WILD-TYPE     55     32     25     23     33     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(3P21.31) MUTATED       30      1     19
  DEL PEAK  5(3P21.31) WILD-TYPE     19     17     35
D34V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           28                             55
  CLUS_2                           25                             32
  CLUS_3                           19                             25
  CLUS_4                           61                             23
  CLUS_5                           13                             33
  CLUS_6                           37                             14
  CLUS_7                           30                             19
  CLUS_8                            1                             17
  CLUS_9                           19                             35
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       64    125     54
  DEL PEAK  5(3P21.31) WILD-TYPE    125    103     39
D34V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           64                            125
  CLUS_2                          125                            103
  CLUS_3                           54                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       32     93     49     69
  DEL PEAK  5(3P21.31) WILD-TYPE     39    105     92     31
D34V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           32                             39
  CLUS_2                           93                            105
  CLUS_3                           49                             92
  CLUS_4                           69                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       68    101     42
  DEL PEAK  5(3P21.31) WILD-TYPE     77     97     49
D34V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           68                             77
  CLUS_2                          101                             97
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       31    141     39
  DEL PEAK  5(3P21.31) WILD-TYPE     72    107     44
D34V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           31                             72
  CLUS_2                          141                            107
  CLUS_3                           39                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(3Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED        0      1      2      2
  DEL PEAK  6(3Q11.1) WILD-TYPE      5      8     10      4
D35V1, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED        2      1      2
  DEL PEAK  6(3Q11.1) WILD-TYPE     12     10      5
D35V2, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           1                            10
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       54     53     32
  DEL PEAK  6(3Q11.1) WILD-TYPE    137    176     63
D35V3, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          54                           137
  CLUS_2                          53                           176
  CLUS_3                          32                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED       30     47     30     23
  DEL PEAK  6(3Q11.1) WILD-TYPE     66     78     78     93
D35V4, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          30                            66
  CLUS_2                          47                            78
  CLUS_3                          30                            78
  CLUS_4                          23                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       13     21     22
  DEL PEAK  6(3Q11.1) WILD-TYPE     31     52     42
D35V5, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                          21                            52
  CLUS_3                          22                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q11.1) MUTATED       12     10     12      9     13
  DEL PEAK  6(3Q11.1) WILD-TYPE     28     23     33     22     19
D35V6, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          12                            28
  CLUS_2                          10                            23
  CLUS_3                          12                            33
  CLUS_4                           9                            22
  CLUS_5                          13                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q11.1) MUTATED       26     35     22     35     16
  DEL PEAK  6(3Q11.1) WILD-TYPE    112     77     54     71     38
D35V7, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          26                           112
  CLUS_2                          35                            77
  CLUS_3                          22                            54
  CLUS_4                          35                            71
  CLUS_5                          16                            38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3Q11.1) MUTATED       21     17      6     19     16     22
  DEL PEAK  6(3Q11.1) WILD-TYPE     62     40     38     65     30     29
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3Q11.1) MUTATED       19      0     14
  DEL PEAK  6(3Q11.1) WILD-TYPE     30     18     40
D35V8, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          21                            62
  CLUS_2                          17                            40
  CLUS_3                           6                            38
  CLUS_4                          19                            65
  CLUS_5                          16                            30
  CLUS_6                          22                            29
  CLUS_7                          19                            30
  CLUS_8                           0                            18
  CLUS_9                          14                            40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       49     57     32
  DEL PEAK  6(3Q11.1) WILD-TYPE    140    171     61
D35V9, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          49                           140
  CLUS_2                          57                           171
  CLUS_3                          32                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q11.1) MUTATED       23     54     35     26
  DEL PEAK  6(3Q11.1) WILD-TYPE     48    144    106     74
D35V10, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          23                            48
  CLUS_2                          54                           144
  CLUS_3                          35                           106
  CLUS_4                          26                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       47     55     25
  DEL PEAK  6(3Q11.1) WILD-TYPE     98    143     66
D35V11, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          47                            98
  CLUS_2                          55                           143
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q11.1) MUTATED       28     75     24
  DEL PEAK  6(3Q11.1) WILD-TYPE     75    173     59
D35V12, multiclass
        clus
vv       DEL PEAK  6(3Q11.1) MUTATED DEL PEAK  6(3Q11.1) WILD-TYPE
  CLUS_1                          28                            75
  CLUS_2                          75                           173
  CLUS_3                          24                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED        0      2      2      2
  DEL PEAK  7(3Q29) WILD-TYPE      5      7     10      4
D36V1, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         0                           5
  CLUS_2                         2                           7
  CLUS_3                         2                          10
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED        3      1      2
  DEL PEAK  7(3Q29) WILD-TYPE     11     10      5
D36V2, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         1                          10
  CLUS_3                         2                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       51     52     32
  DEL PEAK  7(3Q29) WILD-TYPE    140    177     63
D36V3, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        51                         140
  CLUS_2                        52                         177
  CLUS_3                        32                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       35     43     30     15
  DEL PEAK  7(3Q29) WILD-TYPE     61     82     78    101
D36V4, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        35                          61
  CLUS_2                        43                          82
  CLUS_3                        30                          78
  CLUS_4                        15                         101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       19     19     18
  DEL PEAK  7(3Q29) WILD-TYPE     25     54     46
D36V5, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        19                          25
  CLUS_2                        19                          54
  CLUS_3                        18                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       14     13      8      6     15
  DEL PEAK  7(3Q29) WILD-TYPE     26     20     37     25     17
D36V6, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        14                          26
  CLUS_2                        13                          20
  CLUS_3                         8                          37
  CLUS_4                         6                          25
  CLUS_5                        15                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q29) MUTATED       22     40     13     41     15
  DEL PEAK  7(3Q29) WILD-TYPE    116     72     63     65     39
D36V7, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        22                         116
  CLUS_2                        40                          72
  CLUS_3                        13                          63
  CLUS_4                        41                          65
  CLUS_5                        15                          39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  7(3Q29) MUTATED       17     19      5     12     22     29     14
  DEL PEAK  7(3Q29) WILD-TYPE     66     38     39     72     24     22     35
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK  7(3Q29) MUTATED        0     13
  DEL PEAK  7(3Q29) WILD-TYPE     18     41
D36V8, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        17                          66
  CLUS_2                        19                          38
  CLUS_3                         5                          39
  CLUS_4                        12                          72
  CLUS_5                        22                          24
  CLUS_6                        29                          22
  CLUS_7                        14                          35
  CLUS_8                         0                          18
  CLUS_9                        13                          41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       52     57     25
  DEL PEAK  7(3Q29) WILD-TYPE    137    171     68
D36V9, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        52                         137
  CLUS_2                        57                         171
  CLUS_3                        25                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q29) MUTATED       26     56     34     18
  DEL PEAK  7(3Q29) WILD-TYPE     45    142    107     82
D36V10, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        26                          45
  CLUS_2                        56                         142
  CLUS_3                        34                         107
  CLUS_4                        18                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       47     53     19
  DEL PEAK  7(3Q29) WILD-TYPE     98    145     72
D36V11, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        47                          98
  CLUS_2                        53                         145
  CLUS_3                        19                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q29) MUTATED       30     61     28
  DEL PEAK  7(3Q29) WILD-TYPE     73    187     55
D36V12, multiclass
        clus
vv       DEL PEAK  7(3Q29) MUTATED DEL PEAK  7(3Q29) WILD-TYPE
  CLUS_1                        30                          73
  CLUS_2                        61                         187
  CLUS_3                        28                          55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      2      1      2
  DEL PEAK  8(4P16.3) WILD-TYPE      4      7     11      4
D37V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           2                             7
  CLUS_3                           1                            11
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        1      3      2
  DEL PEAK  8(4P16.3) WILD-TYPE     13      8      5
D37V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                             8
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       54     34     42
  DEL PEAK  8(4P16.3) WILD-TYPE    137    195     53
D37V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          54                           137
  CLUS_2                          34                           195
  CLUS_3                          42                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        7     49     25     32
  DEL PEAK  8(4P16.3) WILD-TYPE     89     76     83     84
D37V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           7                            89
  CLUS_2                          49                            76
  CLUS_3                          25                            83
  CLUS_4                          32                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       10     16     17
  DEL PEAK  8(4P16.3) WILD-TYPE     34     57     47
D37V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          10                            34
  CLUS_2                          16                            57
  CLUS_3                          17                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       12     11      8      6      6
  DEL PEAK  8(4P16.3) WILD-TYPE     28     22     37     25     26
D37V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          12                            28
  CLUS_2                          11                            22
  CLUS_3                           8                            37
  CLUS_4                           6                            25
  CLUS_5                           6                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED       35     12     20     45     13
  DEL PEAK  8(4P16.3) WILD-TYPE    103    100     56     61     41
D37V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          35                           103
  CLUS_2                          12                           100
  CLUS_3                          20                            56
  CLUS_4                          45                            61
  CLUS_5                          13                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED       18      9      9     39      4     23
  DEL PEAK  8(4P16.3) WILD-TYPE     65     48     35     45     42     28
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(4P16.3) MUTATED       11      2     10
  DEL PEAK  8(4P16.3) WILD-TYPE     38     16     44
D37V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          18                            65
  CLUS_2                           9                            48
  CLUS_3                           9                            35
  CLUS_4                          39                            45
  CLUS_5                           4                            42
  CLUS_6                          23                            28
  CLUS_7                          11                            38
  CLUS_8                           2                            16
  CLUS_9                          10                            44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       24     80     25
  DEL PEAK  8(4P16.3) WILD-TYPE    165    148     68
D37V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          24                           165
  CLUS_2                          80                           148
  CLUS_3                          25                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        6     57     25     41
  DEL PEAK  8(4P16.3) WILD-TYPE     65    141    116     59
D37V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           6                            65
  CLUS_2                          57                           141
  CLUS_3                          25                           116
  CLUS_4                          41                            59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       33     53     25
  DEL PEAK  8(4P16.3) WILD-TYPE    112    145     66
D37V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          33                           112
  CLUS_2                          53                           145
  CLUS_3                          25                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       13     80     18
  DEL PEAK  8(4P16.3) WILD-TYPE     90    168     65
D37V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          13                            90
  CLUS_2                          80                           168
  CLUS_3                          18                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED        3      1      1      5
  DEL PEAK  9(4Q34.3) WILD-TYPE      2      8     11      1
D38V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             8
  CLUS_3                           1                            11
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED        2      2      6
  DEL PEAK  9(4Q34.3) WILD-TYPE     12      9      1
D38V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           2                             9
  CLUS_3                           6                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       78     49     59
  DEL PEAK  9(4Q34.3) WILD-TYPE    113    180     36
D38V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          78                           113
  CLUS_2                          49                           180
  CLUS_3                          59                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED        9     75     35     41
  DEL PEAK  9(4Q34.3) WILD-TYPE     87     50     73     75
D38V4, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           9                            87
  CLUS_2                          75                            50
  CLUS_3                          35                            73
  CLUS_4                          41                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       11     26     28
  DEL PEAK  9(4Q34.3) WILD-TYPE     33     47     36
D38V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          26                            47
  CLUS_3                          28                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED       13     12     21     12      7
  DEL PEAK  9(4Q34.3) WILD-TYPE     27     21     24     19     25
D38V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          13                            27
  CLUS_2                          12                            21
  CLUS_3                          21                            24
  CLUS_4                          12                            19
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED       45     18     37     64     14
  DEL PEAK  9(4Q34.3) WILD-TYPE     93     94     39     42     40
D38V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          45                            93
  CLUS_2                          18                            94
  CLUS_3                          37                            39
  CLUS_4                          64                            42
  CLUS_5                          14                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED       24      9      6     50      8     36
  DEL PEAK  9(4Q34.3) WILD-TYPE     59     48     38     34     38     15
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4Q34.3) MUTATED       29      1     15
  DEL PEAK  9(4Q34.3) WILD-TYPE     20     17     39
D38V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          24                            59
  CLUS_2                           9                            48
  CLUS_3                           6                            38
  CLUS_4                          50                            34
  CLUS_5                           8                            38
  CLUS_6                          36                            15
  CLUS_7                          29                            20
  CLUS_8                           1                            17
  CLUS_9                          15                            39
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       39    117     29
  DEL PEAK  9(4Q34.3) WILD-TYPE    150    111     64
D38V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          39                           150
  CLUS_2                         117                           111
  CLUS_3                          29                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       12     80     29     64
  DEL PEAK  9(4Q34.3) WILD-TYPE     59    118    112     36
D38V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          80                           118
  CLUS_3                          29                           112
  CLUS_4                          64                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       43     86     30
  DEL PEAK  9(4Q34.3) WILD-TYPE    102    112     61
D38V11, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          43                           102
  CLUS_2                          86                           112
  CLUS_3                          30                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       20    119     20
  DEL PEAK  9(4Q34.3) WILD-TYPE     83    129     63
D38V12, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          20                            83
  CLUS_2                         119                           129
  CLUS_3                          20                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED        2      4      4      5
  DEL PEAK 10(5Q12.1) WILD-TYPE      3      5      8      1
D39V1, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           4                             5
  CLUS_3                           4                             8
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        4      6      5
  DEL PEAK 10(5Q12.1) WILD-TYPE     10      5      2
D39V2, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           6                             5
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       97     40     42
  DEL PEAK 10(5Q12.1) WILD-TYPE     94    189     53
D39V3, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          97                            94
  CLUS_2                          40                           189
  CLUS_3                          42                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       14     63     38     35
  DEL PEAK 10(5Q12.1) WILD-TYPE     82     62     70     81
D39V4, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          14                            82
  CLUS_2                          63                            62
  CLUS_3                          38                            70
  CLUS_4                          35                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED        8     30     23
  DEL PEAK 10(5Q12.1) WILD-TYPE     36     43     41
D39V5, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           8                            36
  CLUS_2                          30                            43
  CLUS_3                          23                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       15      9     18     12      7
  DEL PEAK 10(5Q12.1) WILD-TYPE     25     24     27     19     25
D39V6, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          15                            25
  CLUS_2                           9                            24
  CLUS_3                          18                            27
  CLUS_4                          12                            19
  CLUS_5                           7                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       57     19     29     52     12
  DEL PEAK 10(5Q12.1) WILD-TYPE     81     93     47     54     42
D39V7, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          57                            81
  CLUS_2                          19                            93
  CLUS_3                          29                            47
  CLUS_4                          52                            54
  CLUS_5                          12                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED       30     11     13     46      6     24
  DEL PEAK 10(5Q12.1) WILD-TYPE     53     46     31     38     40     27
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(5Q12.1) MUTATED       24      1     14
  DEL PEAK 10(5Q12.1) WILD-TYPE     25     17     40
D39V8, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          30                            53
  CLUS_2                          11                            46
  CLUS_3                          13                            31
  CLUS_4                          46                            38
  CLUS_5                           6                            40
  CLUS_6                          24                            27
  CLUS_7                          24                            25
  CLUS_8                           1                            17
  CLUS_9                          14                            40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       36    115     25
  DEL PEAK 10(5Q12.1) WILD-TYPE    153    113     68
D39V9, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          36                           153
  CLUS_2                         115                           113
  CLUS_3                          25                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       12     75     33     56
  DEL PEAK 10(5Q12.1) WILD-TYPE     59    123    108     44
D39V10, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          12                            59
  CLUS_2                          75                           123
  CLUS_3                          33                           108
  CLUS_4                          56                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       40     81     27
  DEL PEAK 10(5Q12.1) WILD-TYPE    105    117     64
D39V11, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          40                           105
  CLUS_2                          81                           117
  CLUS_3                          27                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       14    113     21
  DEL PEAK 10(5Q12.1) WILD-TYPE     89    135     62
D39V12, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          14                            89
  CLUS_2                         113                           135
  CLUS_3                          21                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(5Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q31.1) MUTATED        1      4      3      5
  DEL PEAK 11(5Q31.1) WILD-TYPE      4      5      9      1
D40V1, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           4                             5
  CLUS_3                           3                             9
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED        4      4      5
  DEL PEAK 11(5Q31.1) WILD-TYPE     10      7      2
D40V2, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           4                             7
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED      106     53     51
  DEL PEAK 11(5Q31.1) WILD-TYPE     85    176     44
D40V3, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                         106                            85
  CLUS_2                          53                           176
  CLUS_3                          51                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q31.1) MUTATED       18     70     47     41
  DEL PEAK 11(5Q31.1) WILD-TYPE     78     55     61     75
D40V4, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          18                            78
  CLUS_2                          70                            55
  CLUS_3                          47                            61
  CLUS_4                          41                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       11     33     26
  DEL PEAK 11(5Q31.1) WILD-TYPE     33     40     38
D40V5, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          11                            33
  CLUS_2                          33                            40
  CLUS_3                          26                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q31.1) MUTATED       16     12     20     14      8
  DEL PEAK 11(5Q31.1) WILD-TYPE     24     21     25     17     24
D40V6, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          16                            24
  CLUS_2                          12                            21
  CLUS_3                          20                            25
  CLUS_4                          14                            17
  CLUS_5                           8                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q31.1) MUTATED       66     23     33     59     15
  DEL PEAK 11(5Q31.1) WILD-TYPE     72     89     43     47     39
D40V7, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          66                            72
  CLUS_2                          23                            89
  CLUS_3                          33                            43
  CLUS_4                          59                            47
  CLUS_5                          15                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q31.1) MUTATED       36     12     16     47     10     30
  DEL PEAK 11(5Q31.1) WILD-TYPE     47     45     28     37     36     21
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(5Q31.1) MUTATED       26      1     18
  DEL PEAK 11(5Q31.1) WILD-TYPE     23     17     36
D40V8, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          36                            47
  CLUS_2                          12                            45
  CLUS_3                          16                            28
  CLUS_4                          47                            37
  CLUS_5                          10                            36
  CLUS_6                          30                            21
  CLUS_7                          26                            23
  CLUS_8                           1                            17
  CLUS_9                          18                            36
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       46    130     31
  DEL PEAK 11(5Q31.1) WILD-TYPE    143     98     62
D40V9, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          46                           143
  CLUS_2                         130                            98
  CLUS_3                          31                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q31.1) MUTATED       18     89     36     64
  DEL PEAK 11(5Q31.1) WILD-TYPE     53    109    105     36
D40V10, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          89                           109
  CLUS_3                          36                           105
  CLUS_4                          64                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       55     89     35
  DEL PEAK 11(5Q31.1) WILD-TYPE     90    109     56
D40V11, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          55                            90
  CLUS_2                          89                           109
  CLUS_3                          35                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q31.1) MUTATED       21    130     28
  DEL PEAK 11(5Q31.1) WILD-TYPE     82    118     55
D40V12, multiclass
        clus
vv       DEL PEAK 11(5Q31.1) MUTATED DEL PEAK 11(5Q31.1) WILD-TYPE
  CLUS_1                          21                            82
  CLUS_2                         130                           118
  CLUS_3                          28                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(6Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q11.1) MUTATED        2      3      3      2
  DEL PEAK 12(6Q11.1) WILD-TYPE      3      6      9      4
D41V1, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           3                             6
  CLUS_3                           3                             9
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED        5      3      2
  DEL PEAK 12(6Q11.1) WILD-TYPE      9      8      5
D41V2, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           3                             8
  CLUS_3                           2                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       52     56     31
  DEL PEAK 12(6Q11.1) WILD-TYPE    139    173     64
D41V3, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          52                           139
  CLUS_2                          56                           173
  CLUS_3                          31                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q11.1) MUTATED       29     27     39     30
  DEL PEAK 12(6Q11.1) WILD-TYPE     67     98     69     86
D41V4, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          29                            67
  CLUS_2                          27                            98
  CLUS_3                          39                            69
  CLUS_4                          30                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED        9     17     20
  DEL PEAK 12(6Q11.1) WILD-TYPE     35     56     44
D41V5, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                           9                            35
  CLUS_2                          17                            56
  CLUS_3                          20                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q11.1) MUTATED       10     10     10      7      9
  DEL PEAK 12(6Q11.1) WILD-TYPE     30     23     35     24     23
D41V6, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          10                            30
  CLUS_2                          10                            23
  CLUS_3                          10                            35
  CLUS_4                           7                            24
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q11.1) MUTATED       45     28     20     27     14
  DEL PEAK 12(6Q11.1) WILD-TYPE     93     84     56     79     40
D41V7, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          45                            93
  CLUS_2                          28                            84
  CLUS_3                          20                            56
  CLUS_4                          27                            79
  CLUS_5                          14                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q11.1) MUTATED       21     17     17     20     12     16
  DEL PEAK 12(6Q11.1) WILD-TYPE     62     40     27     64     34     35
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(6Q11.1) MUTATED       13      4     14
  DEL PEAK 12(6Q11.1) WILD-TYPE     36     14     40
D41V8, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          21                            62
  CLUS_2                          17                            40
  CLUS_3                          17                            27
  CLUS_4                          20                            64
  CLUS_5                          12                            34
  CLUS_6                          16                            35
  CLUS_7                          13                            36
  CLUS_8                           4                            14
  CLUS_9                          14                            40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       41     63     34
  DEL PEAK 12(6Q11.1) WILD-TYPE    148    165     59
D41V9, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          41                           148
  CLUS_2                          63                           165
  CLUS_3                          34                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q11.1) MUTATED       17     64     35     22
  DEL PEAK 12(6Q11.1) WILD-TYPE     54    134    106     78
D41V10, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                          64                           134
  CLUS_3                          35                           106
  CLUS_4                          22                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       40     52     28
  DEL PEAK 12(6Q11.1) WILD-TYPE    105    146     63
D41V11, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          40                           105
  CLUS_2                          52                           146
  CLUS_3                          28                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q11.1) MUTATED       20     73     27
  DEL PEAK 12(6Q11.1) WILD-TYPE     83    175     56
D41V12, multiclass
        clus
vv       DEL PEAK 12(6Q11.1) MUTATED DEL PEAK 12(6Q11.1) WILD-TYPE
  CLUS_1                          20                            83
  CLUS_2                          73                           175
  CLUS_3                          27                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q22.31) MUTATED        3      4      6      5
  DEL PEAK 13(6Q22.31) WILD-TYPE      2      5      6      1
D42V1, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            4                              5
  CLUS_3                            6                              6
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED        8      4      6
  DEL PEAK 13(6Q22.31) WILD-TYPE      6      7      1
D42V2, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            4                              7
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED      102     96     57
  DEL PEAK 13(6Q22.31) WILD-TYPE     89    133     38
D42V3, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                          102                             89
  CLUS_2                           96                            133
  CLUS_3                           57                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q22.31) MUTATED       53     65     70     36
  DEL PEAK 13(6Q22.31) WILD-TYPE     43     60     38     80
D42V4, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           53                             43
  CLUS_2                           65                             60
  CLUS_3                           70                             38
  CLUS_4                           36                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       27     31     34
  DEL PEAK 13(6Q22.31) WILD-TYPE     17     42     30
D42V5, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           27                             17
  CLUS_2                           31                             42
  CLUS_3                           34                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q22.31) MUTATED       18     25     17     15     17
  DEL PEAK 13(6Q22.31) WILD-TYPE     22      8     28     16     15
D42V6, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           18                             22
  CLUS_2                           25                              8
  CLUS_3                           17                             28
  CLUS_4                           15                             16
  CLUS_5                           17                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q22.31) MUTATED       77     50     27     59     28
  DEL PEAK 13(6Q22.31) WILD-TYPE     61     62     49     47     26
D42V7, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           77                             61
  CLUS_2                           50                             62
  CLUS_3                           27                             49
  CLUS_4                           59                             47
  CLUS_5                           28                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q22.31) MUTATED       46     24     21     31     34     33
  DEL PEAK 13(6Q22.31) WILD-TYPE     37     33     23     53     12     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(6Q22.31) MUTATED       19      4     29
  DEL PEAK 13(6Q22.31) WILD-TYPE     30     14     25
D42V8, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           46                             37
  CLUS_2                           24                             33
  CLUS_3                           21                             23
  CLUS_4                           31                             53
  CLUS_5                           34                             12
  CLUS_6                           33                             18
  CLUS_7                           19                             30
  CLUS_8                            4                             14
  CLUS_9                           29                             25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       90    115     49
  DEL PEAK 13(6Q22.31) WILD-TYPE     99    113     44
D42V9, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           90                             99
  CLUS_2                          115                            113
  CLUS_3                           49                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q22.31) MUTATED       37    118     60     39
  DEL PEAK 13(6Q22.31) WILD-TYPE     34     80     81     61
D42V10, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           37                             34
  CLUS_2                          118                             80
  CLUS_3                           60                             81
  CLUS_4                           39                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       67    101     46
  DEL PEAK 13(6Q22.31) WILD-TYPE     78     97     45
D42V11, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           67                             78
  CLUS_2                          101                             97
  CLUS_3                           46                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q22.31) MUTATED       44    126     44
  DEL PEAK 13(6Q22.31) WILD-TYPE     59    122     39
D42V12, multiclass
        clus
vv       DEL PEAK 13(6Q22.31) MUTATED DEL PEAK 13(6Q22.31) WILD-TYPE
  CLUS_1                           44                             59
  CLUS_2                          126                            122
  CLUS_3                           44                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED        3      6      5      5
  DEL PEAK 14(6Q26) WILD-TYPE      2      3      7      1
D43V1, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         6                           3
  CLUS_3                         5                           7
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED        7      6      6
  DEL PEAK 14(6Q26) WILD-TYPE      7      5      1
D43V2, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         7                           7
  CLUS_2                         6                           5
  CLUS_3                         6                           1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED      102     94     61
  DEL PEAK 14(6Q26) WILD-TYPE     89    135     34
D43V3, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                       102                          89
  CLUS_2                        94                         135
  CLUS_3                        61                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED       50     68     63     39
  DEL PEAK 14(6Q26) WILD-TYPE     46     57     45     77
D43V4, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        50                          46
  CLUS_2                        68                          57
  CLUS_3                        63                          45
  CLUS_4                        39                          77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       26     29     35
  DEL PEAK 14(6Q26) WILD-TYPE     18     44     29
D43V5, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        26                          18
  CLUS_2                        29                          44
  CLUS_3                        35                          29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED       18     22     16     17     17
  DEL PEAK 14(6Q26) WILD-TYPE     22     11     29     14     15
D43V6, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        18                          22
  CLUS_2                        22                          11
  CLUS_3                        16                          29
  CLUS_4                        17                          14
  CLUS_5                        17                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(6Q26) MUTATED       80     49     32     57     27
  DEL PEAK 14(6Q26) WILD-TYPE     58     63     44     49     27
D43V7, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        80                          58
  CLUS_2                        49                          63
  CLUS_3                        32                          44
  CLUS_4                        57                          49
  CLUS_5                        27                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(6Q26) MUTATED       46     24     24     33     32     31     23
  DEL PEAK 14(6Q26) WILD-TYPE     37     33     20     51     14     20     26
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 14(6Q26) MUTATED        4     28
  DEL PEAK 14(6Q26) WILD-TYPE     14     26
D43V8, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        46                          37
  CLUS_2                        24                          33
  CLUS_3                        24                          20
  CLUS_4                        33                          51
  CLUS_5                        32                          14
  CLUS_6                        31                          20
  CLUS_7                        23                          26
  CLUS_8                         4                          14
  CLUS_9                        28                          26
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       91    115     49
  DEL PEAK 14(6Q26) WILD-TYPE     98    113     44
D43V9, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        91                          98
  CLUS_2                       115                         113
  CLUS_3                        49                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(6Q26) MUTATED       35    116     63     41
  DEL PEAK 14(6Q26) WILD-TYPE     36     82     78     59
D43V10, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        35                          36
  CLUS_2                       116                          82
  CLUS_3                        63                          78
  CLUS_4                        41                          59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       65    101     45
  DEL PEAK 14(6Q26) WILD-TYPE     80     97     46
D43V11, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        65                          80
  CLUS_2                       101                          97
  CLUS_3                        45                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(6Q26) MUTATED       42    126     43
  DEL PEAK 14(6Q26) WILD-TYPE     61    122     40
D43V12, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        42                          61
  CLUS_2                       126                         122
  CLUS_3                        43                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED        4      7      3      6
  DEL PEAK 15(8P23.2) WILD-TYPE      1      2      9      0
D44V1, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           7                             2
  CLUS_3                           3                             9
  CLUS_4                           6                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED        5      8      7
  DEL PEAK 15(8P23.2) WILD-TYPE      9      3      0
D44V2, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           8                             3
  CLUS_3                           7                             0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED      137     73     42
  DEL PEAK 15(8P23.2) WILD-TYPE     54    156     53
D44V3, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         137                            54
  CLUS_2                          73                           156
  CLUS_3                          42                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED       29     62     62     61
  DEL PEAK 15(8P23.2) WILD-TYPE     67     63     46     55
D44V4, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          29                            67
  CLUS_2                          62                            63
  CLUS_3                          62                            46
  CLUS_4                          61                            55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       13     40     33
  DEL PEAK 15(8P23.2) WILD-TYPE     31     33     31
D44V5, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          13                            31
  CLUS_2                          40                            33
  CLUS_3                          33                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       20      9     33     13     11
  DEL PEAK 15(8P23.2) WILD-TYPE     20     24     12     18     21
D44V6, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          20                            20
  CLUS_2                           9                            24
  CLUS_3                          33                            12
  CLUS_4                          13                            18
  CLUS_5                          11                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       96     39     32     50     21
  DEL PEAK 15(8P23.2) WILD-TYPE     42     73     44     56     33
D44V7, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          96                            42
  CLUS_2                          39                            73
  CLUS_3                          32                            44
  CLUS_4                          50                            56
  CLUS_5                          21                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       49     22     31     56     10     20
  DEL PEAK 15(8P23.2) WILD-TYPE     34     35     13     28     36     31
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(8P23.2) MUTATED       24      2     24
  DEL PEAK 15(8P23.2) WILD-TYPE     25     16     30
D44V8, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          49                            34
  CLUS_2                          22                            35
  CLUS_3                          31                            13
  CLUS_4                          56                            28
  CLUS_5                          10                            36
  CLUS_6                          20                            31
  CLUS_7                          24                            25
  CLUS_8                           2                            16
  CLUS_9                          24                            30
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       68    127     54
  DEL PEAK 15(8P23.2) WILD-TYPE    121    101     39
D44V9, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          68                           121
  CLUS_2                         127                           101
  CLUS_3                          54                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.2) MUTATED       26    107     58     58
  DEL PEAK 15(8P23.2) WILD-TYPE     45     91     83     42
D44V10, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          26                            45
  CLUS_2                         107                            91
  CLUS_3                          58                            83
  CLUS_4                          58                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       56    104     50
  DEL PEAK 15(8P23.2) WILD-TYPE     89     94     41
D44V11, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          56                            89
  CLUS_2                         104                            94
  CLUS_3                          50                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       32    137     41
  DEL PEAK 15(8P23.2) WILD-TYPE     71    111     42
D44V12, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          32                            71
  CLUS_2                         137                           111
  CLUS_3                          41                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED        1      3      2      2
  DEL PEAK 16(8P11.21) WILD-TYPE      4      6     10      4
D45V1, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED        3      2      3
  DEL PEAK 16(8P11.21) WILD-TYPE     11      9      4
D45V2, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              9
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       84     36      5
  DEL PEAK 16(8P11.21) WILD-TYPE    107    193     90
D45V3, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           84                            107
  CLUS_2                           36                            193
  CLUS_3                            5                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED       17     28     33     30
  DEL PEAK 16(8P11.21) WILD-TYPE     79     97     75     86
D45V4, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           17                             79
  CLUS_2                           28                             97
  CLUS_3                           33                             75
  CLUS_4                           30                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       11     20     14
  DEL PEAK 16(8P11.21) WILD-TYPE     33     53     50
D45V5, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           11                             33
  CLUS_2                           20                             53
  CLUS_3                           14                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       11      3     17      5      9
  DEL PEAK 16(8P11.21) WILD-TYPE     29     30     28     26     23
D45V6, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           11                             29
  CLUS_2                            3                             30
  CLUS_3                           17                             28
  CLUS_4                            5                             26
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       49     25     13     20     10
  DEL PEAK 16(8P11.21) WILD-TYPE     89     87     63     86     44
D45V7, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           49                             89
  CLUS_2                           25                             87
  CLUS_3                           13                             63
  CLUS_4                           20                             86
  CLUS_5                           10                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       22     17     14     22      5     12
  DEL PEAK 16(8P11.21) WILD-TYPE     61     40     30     62     41     39
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(8P11.21) MUTATED       12      0     13
  DEL PEAK 16(8P11.21) WILD-TYPE     37     18     41
D45V8, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           22                             61
  CLUS_2                           17                             40
  CLUS_3                           14                             30
  CLUS_4                           22                             62
  CLUS_5                            5                             41
  CLUS_6                           12                             39
  CLUS_7                           12                             37
  CLUS_8                            0                             18
  CLUS_9                           13                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       39     54     29
  DEL PEAK 16(8P11.21) WILD-TYPE    150    174     64
D45V9, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           39                            150
  CLUS_2                           54                            174
  CLUS_3                           29                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(8P11.21) MUTATED       19     52     29     22
  DEL PEAK 16(8P11.21) WILD-TYPE     52    146    112     78
D45V10, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           19                             52
  CLUS_2                           52                            146
  CLUS_3                           29                            112
  CLUS_4                           22                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       31     52     24
  DEL PEAK 16(8P11.21) WILD-TYPE    114    146     67
D45V11, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           31                            114
  CLUS_2                           52                            146
  CLUS_3                           24                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       18     65     24
  DEL PEAK 16(8P11.21) WILD-TYPE     85    183     59
D45V12, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           65                            183
  CLUS_3                           24                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED        2      5      8      5
  DEL PEAK 17(9P23) WILD-TYPE      3      4      4      1
D46V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         2                           3
  CLUS_2                         5                           4
  CLUS_3                         8                           4
  CLUS_4                         5                           1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        9      6      5
  DEL PEAK 17(9P23) WILD-TYPE      5      5      2
D46V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         6                           5
  CLUS_3                         5                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED      126    107     53
  DEL PEAK 17(9P23) WILD-TYPE     65    122     42
D46V3, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                       126                          65
  CLUS_2                       107                         122
  CLUS_3                        53                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED       49     77     58     58
  DEL PEAK 17(9P23) WILD-TYPE     47     48     50     58
D46V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        49                          47
  CLUS_2                        77                          48
  CLUS_3                        58                          50
  CLUS_4                        58                          58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       24     43     34
  DEL PEAK 17(9P23) WILD-TYPE     20     30     30
D46V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        24                          20
  CLUS_2                        43                          30
  CLUS_3                        34                          30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       23     19     28     19     12
  DEL PEAK 17(9P23) WILD-TYPE     17     14     17     12     20
D46V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        23                          17
  CLUS_2                        19                          14
  CLUS_3                        28                          17
  CLUS_4                        19                          12
  CLUS_5                        12                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       67     59     57     57     28
  DEL PEAK 17(9P23) WILD-TYPE     71     53     19     49     26
D46V7, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        67                          71
  CLUS_2                        59                          53
  CLUS_3                        57                          19
  CLUS_4                        57                          49
  CLUS_5                        28                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(9P23) MUTATED       41     31     19     54     22     26     42
  DEL PEAK 17(9P23) WILD-TYPE     42     26     25     30     24     25      7
                             vv
clus                          CLUS_8 CLUS_9
  DEL PEAK 17(9P23) MUTATED       10     23
  DEL PEAK 17(9P23) WILD-TYPE      8     31
D46V8, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        41                          42
  CLUS_2                        31                          26
  CLUS_3                        19                          25
  CLUS_4                        54                          30
  CLUS_5                        22                          24
  CLUS_6                        26                          25
  CLUS_7                        42                           7
  CLUS_8                        10                           8
  CLUS_9                        23                          31
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       98    124     60
  DEL PEAK 17(9P23) WILD-TYPE     91    104     33
D46V9, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        98                          91
  CLUS_2                       124                         104
  CLUS_3                        60                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9P23) MUTATED       35    108     71     68
  DEL PEAK 17(9P23) WILD-TYPE     36     90     70     32
D46V10, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        35                          36
  CLUS_2                       108                          90
  CLUS_3                        71                          70
  CLUS_4                        68                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       86    101     52
  DEL PEAK 17(9P23) WILD-TYPE     59     97     39
D46V11, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        86                          59
  CLUS_2                       101                          97
  CLUS_3                        52                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       49    143     47
  DEL PEAK 17(9P23) WILD-TYPE     54    105     36
D46V12, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        49                          54
  CLUS_2                       143                         105
  CLUS_3                        47                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED        2      5      8      5
  DEL PEAK 18(9P21.3) WILD-TYPE      3      4      4      1
D47V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           5                             4
  CLUS_3                           8                             4
  CLUS_4                           5                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED        9      6      5
  DEL PEAK 18(9P21.3) WILD-TYPE      5      5      2
D47V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           6                             5
  CLUS_3                           5                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED      130    112     50
  DEL PEAK 18(9P21.3) WILD-TYPE     61    117     45
D47V3, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         130                            61
  CLUS_2                         112                           117
  CLUS_3                          50                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED       47     78     62     58
  DEL PEAK 18(9P21.3) WILD-TYPE     49     47     46     58
D47V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          47                            49
  CLUS_2                          78                            47
  CLUS_3                          62                            46
  CLUS_4                          58                            58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       23     46     37
  DEL PEAK 18(9P21.3) WILD-TYPE     21     27     27
D47V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          23                            21
  CLUS_2                          46                            27
  CLUS_3                          37                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       24     19     30     22     11
  DEL PEAK 18(9P21.3) WILD-TYPE     16     14     15      9     21
D47V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          19                            14
  CLUS_3                          30                            15
  CLUS_4                          22                             9
  CLUS_5                          11                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       73     60     64     51     27
  DEL PEAK 18(9P21.3) WILD-TYPE     65     52     12     55     27
D47V7, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          73                            65
  CLUS_2                          60                            52
  CLUS_3                          64                            12
  CLUS_4                          51                            55
  CLUS_5                          27                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       43     33     21     54     22     24
  DEL PEAK 18(9P21.3) WILD-TYPE     40     24     23     30     24     27
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(9P21.3) MUTATED       44     11     23
  DEL PEAK 18(9P21.3) WILD-TYPE      5      7     31
D47V8, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          43                            40
  CLUS_2                          33                            24
  CLUS_3                          21                            23
  CLUS_4                          54                            30
  CLUS_5                          22                            24
  CLUS_6                          24                            27
  CLUS_7                          44                             5
  CLUS_8                          11                             7
  CLUS_9                          23                            31
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED      101    127     61
  DEL PEAK 18(9P21.3) WILD-TYPE     88    101     32
D47V9, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                         101                            88
  CLUS_2                         127                           101
  CLUS_3                          61                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(9P21.3) MUTATED       35    106     75     73
  DEL PEAK 18(9P21.3) WILD-TYPE     36     92     66     27
D47V10, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          35                            36
  CLUS_2                         106                            92
  CLUS_3                          75                            66
  CLUS_4                          73                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       91     98     53
  DEL PEAK 18(9P21.3) WILD-TYPE     54    100     38
D47V11, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          91                            54
  CLUS_2                          98                           100
  CLUS_3                          53                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       48    145     49
  DEL PEAK 18(9P21.3) WILD-TYPE     55    103     34
D47V12, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          48                            55
  CLUS_2                         145                           103
  CLUS_3                          49                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED        0      6      6      5
  DEL PEAK 19(9Q21.11) WILD-TYPE      5      3      6      1
D48V1, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            6                              3
  CLUS_3                            6                              6
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED        6      6      5
  DEL PEAK 19(9Q21.11) WILD-TYPE      8      5      2
D48V2, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            6                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED      106     89     62
  DEL PEAK 19(9Q21.11) WILD-TYPE     85    140     33
D48V3, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                          106                             85
  CLUS_2                           89                            140
  CLUS_3                           62                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED       37     83     44     54
  DEL PEAK 19(9Q21.11) WILD-TYPE     59     42     64     62
D48V4, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           37                             59
  CLUS_2                           83                             42
  CLUS_3                           44                             64
  CLUS_4                           54                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       17     39     34
  DEL PEAK 19(9Q21.11) WILD-TYPE     27     34     30
D48V5, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           17                             27
  CLUS_2                           39                             34
  CLUS_3                           34                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       24     16     27     14      9
  DEL PEAK 19(9Q21.11) WILD-TYPE     16     17     18     17     23
D48V6, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           24                             16
  CLUS_2                           16                             17
  CLUS_3                           27                             18
  CLUS_4                           14                             17
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       64     44     41     69     26
  DEL PEAK 19(9Q21.11) WILD-TYPE     74     68     35     37     28
D48V7, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           64                             74
  CLUS_2                           44                             68
  CLUS_3                           41                             35
  CLUS_4                           69                             37
  CLUS_5                           26                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       34     27     19     52     15     37
  DEL PEAK 19(9Q21.11) WILD-TYPE     49     30     25     32     31     14
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(9Q21.11) MUTATED       32      4     24
  DEL PEAK 19(9Q21.11) WILD-TYPE     17     14     30
D48V8, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           34                             49
  CLUS_2                           27                             30
  CLUS_3                           19                             25
  CLUS_4                           52                             32
  CLUS_5                           15                             31
  CLUS_6                           37                             14
  CLUS_7                           32                             17
  CLUS_8                            4                             14
  CLUS_9                           24                             30
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       70    126     58
  DEL PEAK 19(9Q21.11) WILD-TYPE    119    102     35
D48V9, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           70                            119
  CLUS_2                          126                            102
  CLUS_3                           58                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(9Q21.11) MUTATED       26    102     55     71
  DEL PEAK 19(9Q21.11) WILD-TYPE     45     96     86     29
D48V10, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           26                             45
  CLUS_2                          102                             96
  CLUS_3                           55                             86
  CLUS_4                           71                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       66     98     52
  DEL PEAK 19(9Q21.11) WILD-TYPE     79    100     39
D48V11, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           66                             79
  CLUS_2                           98                            100
  CLUS_3                           52                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       34    142     40
  DEL PEAK 19(9Q21.11) WILD-TYPE     69    106     43
D48V12, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           34                             69
  CLUS_2                          142                            106
  CLUS_3                           40                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED        1      2      2      1
  DEL PEAK 20(10P15.3) WILD-TYPE      4      7     10      5
D49V1, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            2                             10
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED        2      3      1
  DEL PEAK 20(10P15.3) WILD-TYPE     12      8      6
D49V2, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              8
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       65     37     23
  DEL PEAK 20(10P15.3) WILD-TYPE    126    192     72
D49V3, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           65                            126
  CLUS_2                           37                            192
  CLUS_3                           23                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED       17     43     26     21
  DEL PEAK 20(10P15.3) WILD-TYPE     79     82     82     95
D49V4, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           17                             79
  CLUS_2                           43                             82
  CLUS_3                           26                             82
  CLUS_4                           21                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED        8     24     13
  DEL PEAK 20(10P15.3) WILD-TYPE     36     49     51
D49V5, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           24                             49
  CLUS_3                           13                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P15.3) MUTATED       16      5     12      6      6
  DEL PEAK 20(10P15.3) WILD-TYPE     24     28     33     25     26
D49V6, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                            5                             28
  CLUS_3                           12                             33
  CLUS_4                            6                             25
  CLUS_5                            6                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(10P15.3) MUTATED       43     18     11     32     16
  DEL PEAK 20(10P15.3) WILD-TYPE     95     94     65     74     38
D49V7, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           43                             95
  CLUS_2                           18                             94
  CLUS_3                           11                             65
  CLUS_4                           32                             74
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10P15.3) MUTATED       19     14      8     37      5     16
  DEL PEAK 20(10P15.3) WILD-TYPE     64     43     36     47     41     35
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(10P15.3) MUTATED        7      3     11
  DEL PEAK 20(10P15.3) WILD-TYPE     42     15     43
D49V8, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           19                             64
  CLUS_2                           14                             43
  CLUS_3                            8                             36
  CLUS_4                           37                             47
  CLUS_5                            5                             41
  CLUS_6                           16                             35
  CLUS_7                            7                             42
  CLUS_8                            3                             15
  CLUS_9                           11                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       32     58     34
  DEL PEAK 20(10P15.3) WILD-TYPE    157    170     59
D49V9, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           32                            157
  CLUS_2                           58                            170
  CLUS_3                           34                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10P15.3) MUTATED        9     51     31     33
  DEL PEAK 20(10P15.3) WILD-TYPE     62    147    110     67
D49V10, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                            9                             62
  CLUS_2                           51                            147
  CLUS_3                           31                            110
  CLUS_4                           33                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       26     54     29
  DEL PEAK 20(10P15.3) WILD-TYPE    119    144     62
D49V11, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           26                            119
  CLUS_2                           54                            144
  CLUS_3                           29                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10P15.3) MUTATED       15     69     25
  DEL PEAK 20(10P15.3) WILD-TYPE     88    179     58
D49V12, multiclass
        clus
vv       DEL PEAK 20(10P15.3) MUTATED DEL PEAK 20(10P15.3) WILD-TYPE
  CLUS_1                           15                             88
  CLUS_2                           69                            179
  CLUS_3                           25                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED        2      4      3      1
  DEL PEAK 21(10Q26.3) WILD-TYPE      3      5      9      5
D50V1, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            4                              5
  CLUS_3                            3                              9
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED        4      5      1
  DEL PEAK 21(10Q26.3) WILD-TYPE     10      6      6
D50V2, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              6
  CLUS_3                            1                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       79     42     26
  DEL PEAK 21(10Q26.3) WILD-TYPE    112    187     69
D50V3, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           79                            112
  CLUS_2                           42                            187
  CLUS_3                           26                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED       17     43     36     27
  DEL PEAK 21(10Q26.3) WILD-TYPE     79     82     72     89
D50V4, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           17                             79
  CLUS_2                           43                             82
  CLUS_3                           36                             72
  CLUS_4                           27                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED        5     31     19
  DEL PEAK 21(10Q26.3) WILD-TYPE     39     42     45
D50V5, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                            5                             39
  CLUS_2                           31                             42
  CLUS_3                           19                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       18      4     19      9      5
  DEL PEAK 21(10Q26.3) WILD-TYPE     22     29     26     22     27
D50V6, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           18                             22
  CLUS_2                            4                             29
  CLUS_3                           19                             26
  CLUS_4                            9                             22
  CLUS_5                            5                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q26.3) MUTATED       59     19     13     34     16
  DEL PEAK 21(10Q26.3) WILD-TYPE     79     93     63     72     38
D50V7, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           59                             79
  CLUS_2                           19                             93
  CLUS_3                           13                             63
  CLUS_4                           34                             72
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q26.3) MUTATED       30     16     15     43      1     11
  DEL PEAK 21(10Q26.3) WILD-TYPE     53     41     29     41     45     40
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(10Q26.3) MUTATED        9      2     14
  DEL PEAK 21(10Q26.3) WILD-TYPE     40     16     40
D50V8, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           30                             53
  CLUS_2                           16                             41
  CLUS_3                           15                             29
  CLUS_4                           43                             41
  CLUS_5                            1                             45
  CLUS_6                           11                             40
  CLUS_7                            9                             40
  CLUS_8                            2                             16
  CLUS_9                           14                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       39     73     33
  DEL PEAK 21(10Q26.3) WILD-TYPE    150    155     60
D50V9, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           39                            150
  CLUS_2                           73                            155
  CLUS_3                           33                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(10Q26.3) MUTATED       10     60     32     43
  DEL PEAK 21(10Q26.3) WILD-TYPE     61    138    109     57
D50V10, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           10                             61
  CLUS_2                           60                            138
  CLUS_3                           32                            109
  CLUS_4                           43                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       31     69     24
  DEL PEAK 21(10Q26.3) WILD-TYPE    114    129     67
D50V11, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           31                            114
  CLUS_2                           69                            129
  CLUS_3                           24                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q26.3) MUTATED       14     84     26
  DEL PEAK 21(10Q26.3) WILD-TYPE     89    164     57
D50V12, multiclass
        clus
vv       DEL PEAK 21(10Q26.3) MUTATED DEL PEAK 21(10Q26.3) WILD-TYPE
  CLUS_1                           14                             89
  CLUS_2                           84                            164
  CLUS_3                           26                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED        1      2      1      3
  DEL PEAK 22(11P15.5) WILD-TYPE      4      7     11      3
D51V1, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED        1      2      4
  DEL PEAK 22(11P15.5) WILD-TYPE     13      9      3
D51V2, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            2                              9
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       79     35     28
  DEL PEAK 22(11P15.5) WILD-TYPE    112    194     67
D51V3, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           79                            112
  CLUS_2                           35                            194
  CLUS_3                           28                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED       15     45     36     25
  DEL PEAK 22(11P15.5) WILD-TYPE     81     80     72     91
D51V4, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           15                             81
  CLUS_2                           45                             80
  CLUS_3                           36                             72
  CLUS_4                           25                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED        8     17     17
  DEL PEAK 22(11P15.5) WILD-TYPE     36     56     47
D51V5, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           17                             56
  CLUS_3                           17                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED        9      7     15      7      4
  DEL PEAK 22(11P15.5) WILD-TYPE     31     26     30     24     28
D51V6, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                            7                             26
  CLUS_3                           15                             30
  CLUS_4                            7                             24
  CLUS_5                            4                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(11P15.5) MUTATED       45     13     24     35     14
  DEL PEAK 22(11P15.5) WILD-TYPE     93     99     52     71     40
D51V7, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           45                             93
  CLUS_2                           13                             99
  CLUS_3                           24                             52
  CLUS_4                           35                             71
  CLUS_5                           14                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11P15.5) MUTATED       23      6     11     34      8     13
  DEL PEAK 22(11P15.5) WILD-TYPE     60     51     33     50     38     38
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(11P15.5) MUTATED       23      0     13
  DEL PEAK 22(11P15.5) WILD-TYPE     26     18     41
D51V8, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           23                             60
  CLUS_2                            6                             51
  CLUS_3                           11                             33
  CLUS_4                           34                             50
  CLUS_5                            8                             38
  CLUS_6                           13                             38
  CLUS_7                           23                             26
  CLUS_8                            0                             18
  CLUS_9                           13                             41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       35     83     22
  DEL PEAK 22(11P15.5) WILD-TYPE    154    145     71
D51V9, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           35                            154
  CLUS_2                           83                            145
  CLUS_3                           22                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11P15.5) MUTATED       14     63     24     39
  DEL PEAK 22(11P15.5) WILD-TYPE     57    135    117     61
D51V10, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           63                            135
  CLUS_3                           24                            117
  CLUS_4                           39                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       34     66     21
  DEL PEAK 22(11P15.5) WILD-TYPE    111    132     70
D51V11, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           34                            111
  CLUS_2                           66                            132
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11P15.5) MUTATED       17     87     17
  DEL PEAK 22(11P15.5) WILD-TYPE     86    161     66
D51V12, multiclass
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  CLUS_1                           17                             86
  CLUS_2                           87                            161
  CLUS_3                           17                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED        2      2      1      1
  DEL PEAK 23(11Q23.2) WILD-TYPE      3      7     11      5
D52V1, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED        2      2      2
  DEL PEAK 23(11Q23.2) WILD-TYPE     12      9      5
D52V2, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              9
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       39     39     42
  DEL PEAK 23(11Q23.2) WILD-TYPE    152    190     53
D52V3, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           39                            152
  CLUS_2                           39                            190
  CLUS_3                           42                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED       14     41     28     20
  DEL PEAK 23(11Q23.2) WILD-TYPE     82     84     80     96
D52V4, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           14                             82
  CLUS_2                           41                             84
  CLUS_3                           28                             80
  CLUS_4                           20                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED        8     11     21
  DEL PEAK 23(11Q23.2) WILD-TYPE     36     62     43
D52V5, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           11                             62
  CLUS_3                           21                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.2) MUTATED        5     11     10      7      7
  DEL PEAK 23(11Q23.2) WILD-TYPE     35     22     35     24     25
D52V6, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                            5                             35
  CLUS_2                           11                             22
  CLUS_3                           10                             35
  CLUS_4                            7                             24
  CLUS_5                            7                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11Q23.2) MUTATED       26     13     25     37     10
  DEL PEAK 23(11Q23.2) WILD-TYPE    112     99     51     69     44
D52V7, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           26                            112
  CLUS_2                           13                             99
  CLUS_3                           25                             51
  CLUS_4                           37                             69
  CLUS_5                           10                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11Q23.2) MUTATED       21      4     10     19     14     18
  DEL PEAK 23(11Q23.2) WILD-TYPE     62     53     34     65     32     33
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(11Q23.2) MUTATED       16      3      6
  DEL PEAK 23(11Q23.2) WILD-TYPE     33     15     48
D52V8, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           21                             62
  CLUS_2                            4                             53
  CLUS_3                           10                             34
  CLUS_4                           19                             65
  CLUS_5                           14                             32
  CLUS_6                           18                             33
  CLUS_7                           16                             33
  CLUS_8                            3                             15
  CLUS_9                            6                             48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       35     70     14
  DEL PEAK 23(11Q23.2) WILD-TYPE    154    158     79
D52V9, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           35                            154
  CLUS_2                           70                            158
  CLUS_3                           14                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(11Q23.2) MUTATED       14     59     24     22
  DEL PEAK 23(11Q23.2) WILD-TYPE     57    139    117     78
D52V10, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           14                             57
  CLUS_2                           59                            139
  CLUS_3                           24                            117
  CLUS_4                           22                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       29     55     14
  DEL PEAK 23(11Q23.2) WILD-TYPE    116    143     77
D52V11, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           29                            116
  CLUS_2                           55                            143
  CLUS_3                           14                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11Q23.2) MUTATED       18     62     18
  DEL PEAK 23(11Q23.2) WILD-TYPE     85    186     65
D52V12, multiclass
        clus
vv       DEL PEAK 23(11Q23.2) MUTATED DEL PEAK 23(11Q23.2) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           62                            186
  CLUS_3                           18                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED        2      2      0      1
  DEL PEAK 24(11Q25) WILD-TYPE      3      7     12      5
D53V1, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                          2                            7
  CLUS_3                          0                           12
  CLUS_4                          1                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED        1      2      2
  DEL PEAK 24(11Q25) WILD-TYPE     13      9      5
D53V2, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            9
  CLUS_3                          2                            5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       43     35     38
  DEL PEAK 24(11Q25) WILD-TYPE    148    194     57
D53V3, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         43                          148
  CLUS_2                         35                          194
  CLUS_3                         38                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED       15     40     28     20
  DEL PEAK 24(11Q25) WILD-TYPE     81     85     80     96
D53V4, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         15                           81
  CLUS_2                         40                           85
  CLUS_3                         28                           80
  CLUS_4                         20                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED        9      8     22
  DEL PEAK 24(11Q25) WILD-TYPE     35     65     42
D53V5, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          9                           35
  CLUS_2                          8                           65
  CLUS_3                         22                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q25) MUTATED        4      9      8     10      8
  DEL PEAK 24(11Q25) WILD-TYPE     36     24     37     21     24
D53V6, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                          4                           36
  CLUS_2                          9                           24
  CLUS_3                          8                           37
  CLUS_4                         10                           21
  CLUS_5                          8                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q25) MUTATED       24     14     26     35     10
  DEL PEAK 24(11Q25) WILD-TYPE    114     98     50     71     44
D53V7, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         24                          114
  CLUS_2                         14                           98
  CLUS_3                         26                           50
  CLUS_4                         35                           71
  CLUS_5                         10                           44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(11Q25) MUTATED       19      5     11     18     14     17     16
  DEL PEAK 24(11Q25) WILD-TYPE     64     52     33     66     32     34     33
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 24(11Q25) MUTATED        3      6
  DEL PEAK 24(11Q25) WILD-TYPE     15     48
D53V8, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         19                           64
  CLUS_2                          5                           52
  CLUS_3                         11                           33
  CLUS_4                         18                           66
  CLUS_5                         14                           32
  CLUS_6                         17                           34
  CLUS_7                         16                           33
  CLUS_8                          3                           15
  CLUS_9                          6                           48
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       36     62     17
  DEL PEAK 24(11Q25) WILD-TYPE    153    166     76
D53V9, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         36                          153
  CLUS_2                         62                          166
  CLUS_3                         17                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11Q25) MUTATED       14     55     26     20
  DEL PEAK 24(11Q25) WILD-TYPE     57    143    115     80
D53V10, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         14                           57
  CLUS_2                         55                          143
  CLUS_3                         26                          115
  CLUS_4                         20                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       33     52     14
  DEL PEAK 24(11Q25) WILD-TYPE    112    146     77
D53V11, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         33                          112
  CLUS_2                         52                          146
  CLUS_3                         14                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q25) MUTATED       19     61     19
  DEL PEAK 24(11Q25) WILD-TYPE     84    187     64
D53V12, multiclass
        clus
vv       DEL PEAK 24(11Q25) MUTATED DEL PEAK 24(11Q25) WILD-TYPE
  CLUS_1                         19                           84
  CLUS_2                         61                          187
  CLUS_3                         19                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED        0      5      5      2
  DEL PEAK 25(12P13.2) WILD-TYPE      5      4      7      4
D54V1, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED        6      4      2
  DEL PEAK 25(12P13.2) WILD-TYPE      8      7      5
D54V2, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       70     48     21
  DEL PEAK 25(12P13.2) WILD-TYPE    121    181     74
D54V3, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           70                            121
  CLUS_2                           48                            181
  CLUS_3                           21                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED       27     32     40     19
  DEL PEAK 25(12P13.2) WILD-TYPE     69     93     68     97
D54V4, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           27                             69
  CLUS_2                           32                             93
  CLUS_3                           40                             68
  CLUS_4                           19                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       14     25     13
  DEL PEAK 25(12P13.2) WILD-TYPE     30     48     51
D54V5, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           14                             30
  CLUS_2                           25                             48
  CLUS_3                           13                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12P13.2) MUTATED       17      7     15      4      9
  DEL PEAK 25(12P13.2) WILD-TYPE     23     26     30     27     23
D54V6, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           17                             23
  CLUS_2                            7                             26
  CLUS_3                           15                             30
  CLUS_4                            4                             27
  CLUS_5                            9                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(12P13.2) MUTATED       44     38      8     25     16
  DEL PEAK 25(12P13.2) WILD-TYPE     94     74     68     81     38
D54V7, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           44                             94
  CLUS_2                           38                             74
  CLUS_3                            8                             68
  CLUS_4                           25                             81
  CLUS_5                           16                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12P13.2) MUTATED       27     20     12     30     11      8
  DEL PEAK 25(12P13.2) WILD-TYPE     56     37     32     54     35     43
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(12P13.2) MUTATED        4      2     17
  DEL PEAK 25(12P13.2) WILD-TYPE     45     16     37
D54V8, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           27                             56
  CLUS_2                           20                             37
  CLUS_3                           12                             32
  CLUS_4                           30                             54
  CLUS_5                           11                             35
  CLUS_6                            8                             43
  CLUS_7                            4                             45
  CLUS_8                            2                             16
  CLUS_9                           17                             37
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       48     61     27
  DEL PEAK 25(12P13.2) WILD-TYPE    141    167     66
D54V9, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           48                            141
  CLUS_2                           61                            167
  CLUS_3                           27                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12P13.2) MUTATED       19     51     38     28
  DEL PEAK 25(12P13.2) WILD-TYPE     52    147    103     72
D54V10, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           19                             52
  CLUS_2                           51                            147
  CLUS_3                           38                            103
  CLUS_4                           28                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       38     57     20
  DEL PEAK 25(12P13.2) WILD-TYPE    107    141     71
D54V11, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           38                            107
  CLUS_2                           57                            141
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12P13.2) MUTATED       20     67     28
  DEL PEAK 25(12P13.2) WILD-TYPE     83    181     55
D54V12, multiclass
        clus
vv       DEL PEAK 25(12P13.2) MUTATED DEL PEAK 25(12P13.2) WILD-TYPE
  CLUS_1                           20                             83
  CLUS_2                           67                            181
  CLUS_3                           28                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED        0      2      4      1
  DEL PEAK 26(12Q12) WILD-TYPE      5      7      8      5
D55V1, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          0                            5
  CLUS_2                          2                            7
  CLUS_3                          4                            8
  CLUS_4                          1                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED        4      2      1
  DEL PEAK 26(12Q12) WILD-TYPE     10      9      6
D55V2, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          2                            9
  CLUS_3                          1                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       53     35     10
  DEL PEAK 26(12Q12) WILD-TYPE    138    194     85
D55V3, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         53                          138
  CLUS_2                         35                          194
  CLUS_3                         10                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED       23     19     27     18
  DEL PEAK 26(12Q12) WILD-TYPE     73    106     81     98
D55V4, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         23                           73
  CLUS_2                         19                          106
  CLUS_3                         27                           81
  CLUS_4                         18                           98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       10     22     10
  DEL PEAK 26(12Q12) WILD-TYPE     34     51     54
D55V5, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         22                           51
  CLUS_3                         10                           54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q12) MUTATED        9      6     17      3      7
  DEL PEAK 26(12Q12) WILD-TYPE     31     27     28     28     25
D55V6, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                          9                           31
  CLUS_2                          6                           27
  CLUS_3                         17                           28
  CLUS_4                          3                           28
  CLUS_5                          7                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12Q12) MUTATED       35     27     10     10     11
  DEL PEAK 26(12Q12) WILD-TYPE    103     85     66     96     43
D55V7, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         35                          103
  CLUS_2                         27                           85
  CLUS_3                         10                           66
  CLUS_4                         10                           96
  CLUS_5                         11                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 26(12Q12) MUTATED       23     11      7     18      9      2      8
  DEL PEAK 26(12Q12) WILD-TYPE     60     46     37     66     37     49     41
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 26(12Q12) MUTATED        1     14
  DEL PEAK 26(12Q12) WILD-TYPE     17     40
D55V8, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         23                           60
  CLUS_2                         11                           46
  CLUS_3                          7                           37
  CLUS_4                         18                           66
  CLUS_5                          9                           37
  CLUS_6                          2                           49
  CLUS_7                          8                           41
  CLUS_8                          1                           17
  CLUS_9                         14                           40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       40     33     23
  DEL PEAK 26(12Q12) WILD-TYPE    149    195     70
D55V9, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         40                          149
  CLUS_2                         33                          195
  CLUS_3                         23                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(12Q12) MUTATED       16     35     32     13
  DEL PEAK 26(12Q12) WILD-TYPE     55    163    109     87
D55V10, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         16                           55
  CLUS_2                         35                          163
  CLUS_3                         32                          109
  CLUS_4                         13                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       28     37     19
  DEL PEAK 26(12Q12) WILD-TYPE    117    161     72
D55V11, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         28                          117
  CLUS_2                         37                          161
  CLUS_3                         19                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12Q12) MUTATED       16     43     25
  DEL PEAK 26(12Q12) WILD-TYPE     87    205     58
D55V12, multiclass
        clus
vv       DEL PEAK 26(12Q12) MUTATED DEL PEAK 26(12Q12) WILD-TYPE
  CLUS_1                         16                           87
  CLUS_2                         43                          205
  CLUS_3                         25                           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED        0      0      5      1
  DEL PEAK 27(12Q24.33) WILD-TYPE      5      9      7      5
D56V1, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             0                               5
  CLUS_2                             0                               9
  CLUS_3                             5                               7
  CLUS_4                             1                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED        5      0      1
  DEL PEAK 27(12Q24.33) WILD-TYPE      9     11      6
D56V2, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             0                              11
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       65     55     10
  DEL PEAK 27(12Q24.33) WILD-TYPE    126    174     85
D56V3, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            65                             126
  CLUS_2                            55                             174
  CLUS_3                            10                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED       31     28     33     22
  DEL PEAK 27(12Q24.33) WILD-TYPE     65     97     75     94
D56V4, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            31                              65
  CLUS_2                            28                              97
  CLUS_3                            33                              75
  CLUS_4                            22                              94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       16     25     12
  DEL PEAK 27(12Q24.33) WILD-TYPE     28     48     52
D56V5, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            16                              28
  CLUS_2                            25                              48
  CLUS_3                            12                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q24.33) MUTATED       13      7     15      5     13
  DEL PEAK 27(12Q24.33) WILD-TYPE     27     26     30     26     19
D56V6, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            13                              27
  CLUS_2                             7                              26
  CLUS_3                            15                              30
  CLUS_4                             5                              26
  CLUS_5                            13                              19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q24.33) MUTATED       46     35      7     16     18
  DEL PEAK 27(12Q24.33) WILD-TYPE     92     77     69     90     36
D56V7, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            46                              92
  CLUS_2                            35                              77
  CLUS_3                             7                              69
  CLUS_4                            16                              90
  CLUS_5                            18                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q24.33) MUTATED       31     18      4     24     15      2
  DEL PEAK 27(12Q24.33) WILD-TYPE     52     39     40     60     31     49
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(12Q24.33) MUTATED        6      2     20
  DEL PEAK 27(12Q24.33) WILD-TYPE     43     16     34
D56V8, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            31                              52
  CLUS_2                            18                              39
  CLUS_3                             4                              40
  CLUS_4                            24                              60
  CLUS_5                            15                              31
  CLUS_6                             2                              49
  CLUS_7                             6                              43
  CLUS_8                             2                              16
  CLUS_9                            20                              34
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       52     48     28
  DEL PEAK 27(12Q24.33) WILD-TYPE    137    180     65
D56V9, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            52                             137
  CLUS_2                            48                             180
  CLUS_3                            28                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q24.33) MUTATED       19     48     46     15
  DEL PEAK 27(12Q24.33) WILD-TYPE     52    150     95     85
D56V10, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            19                              52
  CLUS_2                            48                             150
  CLUS_3                            46                              95
  CLUS_4                            15                              85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       40     55     20
  DEL PEAK 27(12Q24.33) WILD-TYPE    105    143     71
D56V11, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            40                             105
  CLUS_2                            55                             143
  CLUS_3                            20                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q24.33) MUTATED       28     61     26
  DEL PEAK 27(12Q24.33) WILD-TYPE     75    187     57
D56V12, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            28                              75
  CLUS_2                            61                             187
  CLUS_3                            26                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED        5      5      1      4
  DEL PEAK 28(13Q12.11) WILD-TYPE      0      4     11      2
D57V1, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                             5                               0
  CLUS_2                             5                               4
  CLUS_3                             1                              11
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED        3      7      5
  DEL PEAK 28(13Q12.11) WILD-TYPE     11      4      2
D57V2, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             7                               4
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED      147     79     67
  DEL PEAK 28(13Q12.11) WILD-TYPE     44    150     28
D57V3, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                           147                              44
  CLUS_2                            79                             150
  CLUS_3                            67                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED       43     81     69     64
  DEL PEAK 28(13Q12.11) WILD-TYPE     53     44     39     52
D57V4, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            43                              53
  CLUS_2                            81                              44
  CLUS_3                            69                              39
  CLUS_4                            64                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       18     49     29
  DEL PEAK 28(13Q12.11) WILD-TYPE     26     24     35
D57V5, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            18                              26
  CLUS_2                            49                              24
  CLUS_3                            29                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q12.11) MUTATED       28     11     32     13     12
  DEL PEAK 28(13Q12.11) WILD-TYPE     12     22     13     18     20
D57V6, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            28                              12
  CLUS_2                            11                              22
  CLUS_3                            32                              13
  CLUS_4                            13                              18
  CLUS_5                            12                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q12.11) MUTATED      101     45     30     76     27
  DEL PEAK 28(13Q12.11) WILD-TYPE     37     67     46     30     27
D57V7, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                           101                              37
  CLUS_2                            45                              67
  CLUS_3                            30                              46
  CLUS_4                            76                              30
  CLUS_5                            27                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q12.11) MUTATED       60     24     29     61     14     37
  DEL PEAK 28(13Q12.11) WILD-TYPE     23     33     15     23     32     14
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(13Q12.11) MUTATED       24      1     29
  DEL PEAK 28(13Q12.11) WILD-TYPE     25     17     25
D57V8, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            60                              23
  CLUS_2                            24                              33
  CLUS_3                            29                              15
  CLUS_4                            61                              23
  CLUS_5                            14                              32
  CLUS_6                            37                              14
  CLUS_7                            24                              25
  CLUS_8                             1                              17
  CLUS_9                            29                              25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       90    142     60
  DEL PEAK 28(13Q12.11) WILD-TYPE     99     86     33
D57V9, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            90                              99
  CLUS_2                           142                              86
  CLUS_3                            60                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q12.11) MUTATED       37    124     65     66
  DEL PEAK 28(13Q12.11) WILD-TYPE     34     74     76     34
D57V10, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            37                              34
  CLUS_2                           124                              74
  CLUS_3                            65                              76
  CLUS_4                            66                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       77    123     52
  DEL PEAK 28(13Q12.11) WILD-TYPE     68     75     39
D57V11, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            77                              68
  CLUS_2                           123                              75
  CLUS_3                            52                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q12.11) MUTATED       44    161     47
  DEL PEAK 28(13Q12.11) WILD-TYPE     59     87     36
D57V12, multiclass
        clus
vv       DEL PEAK 28(13Q12.11) MUTATED DEL PEAK 28(13Q12.11) WILD-TYPE
  CLUS_1                            44                              59
  CLUS_2                           161                              87
  CLUS_3                            47                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q12.13) MUTATED        4      5      1      4
  DEL PEAK 29(13Q12.13) WILD-TYPE      1      4     11      2
D58V1, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                             4                               1
  CLUS_2                             5                               4
  CLUS_3                             1                              11
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED        3      6      5
  DEL PEAK 29(13Q12.13) WILD-TYPE     11      5      2
D58V2, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             6                               5
  CLUS_3                             5                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED      147     77     68
  DEL PEAK 29(13Q12.13) WILD-TYPE     44    152     27
D58V3, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                           147                              44
  CLUS_2                            77                             152
  CLUS_3                            68                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q12.13) MUTATED       43     80     72     62
  DEL PEAK 29(13Q12.13) WILD-TYPE     53     45     36     54
D58V4, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            43                              53
  CLUS_2                            80                              45
  CLUS_3                            72                              36
  CLUS_4                            62                              54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       18     49     30
  DEL PEAK 29(13Q12.13) WILD-TYPE     26     24     34
D58V5, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            18                              26
  CLUS_2                            49                              24
  CLUS_3                            30                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q12.13) MUTATED       28     12     32     13     12
  DEL PEAK 29(13Q12.13) WILD-TYPE     12     21     13     18     20
D58V6, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            28                              12
  CLUS_2                            12                              21
  CLUS_3                            32                              13
  CLUS_4                            13                              18
  CLUS_5                            12                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q12.13) MUTATED       99     47     29     76     27
  DEL PEAK 29(13Q12.13) WILD-TYPE     39     65     47     30     27
D58V7, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            99                              39
  CLUS_2                            47                              65
  CLUS_3                            29                              47
  CLUS_4                            76                              30
  CLUS_5                            27                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q12.13) MUTATED       60     26     28     58     14     39
  DEL PEAK 29(13Q12.13) WILD-TYPE     23     31     16     26     32     12
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(13Q12.13) MUTATED       23      1     29
  DEL PEAK 29(13Q12.13) WILD-TYPE     26     17     25
D58V8, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            60                              23
  CLUS_2                            26                              31
  CLUS_3                            28                              16
  CLUS_4                            58                              26
  CLUS_5                            14                              32
  CLUS_6                            39                              12
  CLUS_7                            23                              26
  CLUS_8                             1                              17
  CLUS_9                            29                              25
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       90    142     59
  DEL PEAK 29(13Q12.13) WILD-TYPE     99     86     34
D58V9, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            90                              99
  CLUS_2                           142                              86
  CLUS_3                            59                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q12.13) MUTATED       36    123     66     66
  DEL PEAK 29(13Q12.13) WILD-TYPE     35     75     75     34
D58V10, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            36                              35
  CLUS_2                           123                              75
  CLUS_3                            66                              75
  CLUS_4                            66                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       77    124     53
  DEL PEAK 29(13Q12.13) WILD-TYPE     68     74     38
D58V11, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            77                              68
  CLUS_2                           124                              74
  CLUS_3                            53                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q12.13) MUTATED       44    162     48
  DEL PEAK 29(13Q12.13) WILD-TYPE     59     86     35
D58V12, multiclass
        clus
vv       DEL PEAK 29(13Q12.13) MUTATED DEL PEAK 29(13Q12.13) WILD-TYPE
  CLUS_1                            44                              59
  CLUS_2                           162                              86
  CLUS_3                            48                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        4      5      1      4
  DEL PEAK 30(13Q14.2) WILD-TYPE      1      4     11      2
D59V1, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            5                              4
  CLUS_3                            1                             11
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED        3      6      5
  DEL PEAK 30(13Q14.2) WILD-TYPE     11      5      2
D59V2, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            6                              5
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED      143     72     67
  DEL PEAK 30(13Q14.2) WILD-TYPE     48    157     28
D59V3, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                          143                             48
  CLUS_2                           72                            157
  CLUS_3                           67                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       40     77     63     63
  DEL PEAK 30(13Q14.2) WILD-TYPE     56     48     45     53
D59V4, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           40                             56
  CLUS_2                           77                             48
  CLUS_3                           63                             45
  CLUS_4                           63                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       15     47     30
  DEL PEAK 30(13Q14.2) WILD-TYPE     29     26     34
D59V5, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           15                             29
  CLUS_2                           47                             26
  CLUS_3                           30                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED       28     11     29     13     11
  DEL PEAK 30(13Q14.2) WILD-TYPE     12     22     16     18     21
D59V6, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           28                             12
  CLUS_2                           11                             22
  CLUS_3                           29                             16
  CLUS_4                           13                             18
  CLUS_5                           11                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED       98     43     28     74     25
  DEL PEAK 30(13Q14.2) WILD-TYPE     40     69     48     32     29
D59V7, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           98                             40
  CLUS_2                           43                             69
  CLUS_3                           28                             48
  CLUS_4                           74                             32
  CLUS_5                           25                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED       59     24     29     54     11     40
  DEL PEAK 30(13Q14.2) WILD-TYPE     24     33     15     30     35     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(13Q14.2) MUTATED       23      1     27
  DEL PEAK 30(13Q14.2) WILD-TYPE     26     17     27
D59V8, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           59                             24
  CLUS_2                           24                             33
  CLUS_3                           29                             15
  CLUS_4                           54                             30
  CLUS_5                           11                             35
  CLUS_6                           40                             11
  CLUS_7                           23                             26
  CLUS_8                            1                             17
  CLUS_9                           27                             27
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       84    140     55
  DEL PEAK 30(13Q14.2) WILD-TYPE    105     88     38
D59V9, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           84                            105
  CLUS_2                          140                             88
  CLUS_3                           55                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       34    123     63     59
  DEL PEAK 30(13Q14.2) WILD-TYPE     37     75     78     41
D59V10, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           34                             37
  CLUS_2                          123                             75
  CLUS_3                           63                             78
  CLUS_4                           59                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       71    122     47
  DEL PEAK 30(13Q14.2) WILD-TYPE     74     76     44
D59V11, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           71                             74
  CLUS_2                          122                             76
  CLUS_3                           47                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       39    157     44
  DEL PEAK 30(13Q14.2) WILD-TYPE     64     91     39
D59V12, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           39                             64
  CLUS_2                          157                             91
  CLUS_3                           44                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q34) MUTATED        3      4      1      4
  DEL PEAK 31(13Q34) WILD-TYPE      2      5     11      2
D60V1, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          4                            5
  CLUS_3                          1                           11
  CLUS_4                          4                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED        3      4      5
  DEL PEAK 31(13Q34) WILD-TYPE     11      7      2
D60V2, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          4                            7
  CLUS_3                          5                            2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED      117     62     62
  DEL PEAK 31(13Q34) WILD-TYPE     74    167     33
D60V3, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                        117                           74
  CLUS_2                         62                          167
  CLUS_3                         62                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q34) MUTATED       36     61     57     55
  DEL PEAK 31(13Q34) WILD-TYPE     60     64     51     61
D60V4, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         36                           60
  CLUS_2                         61                           64
  CLUS_3                         57                           51
  CLUS_4                         55                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       10     41     24
  DEL PEAK 31(13Q34) WILD-TYPE     34     32     40
D60V5, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         10                           34
  CLUS_2                         41                           32
  CLUS_3                         24                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q34) MUTATED       24     10     22     11      8
  DEL PEAK 31(13Q34) WILD-TYPE     16     23     23     20     24
D60V6, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         24                           16
  CLUS_2                         10                           23
  CLUS_3                         22                           23
  CLUS_4                         11                           20
  CLUS_5                          8                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(13Q34) MUTATED       80     38     25     65     22
  DEL PEAK 31(13Q34) WILD-TYPE     58     74     51     41     32
D60V7, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         80                           58
  CLUS_2                         38                           74
  CLUS_3                         25                           51
  CLUS_4                         65                           41
  CLUS_5                         22                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 31(13Q34) MUTATED       53     19     24     43     13     33     21
  DEL PEAK 31(13Q34) WILD-TYPE     30     38     20     41     33     18     28
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 31(13Q34) MUTATED        1     23
  DEL PEAK 31(13Q34) WILD-TYPE     17     31
D60V8, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         53                           30
  CLUS_2                         19                           38
  CLUS_3                         24                           20
  CLUS_4                         43                           41
  CLUS_5                         13                           33
  CLUS_6                         33                           18
  CLUS_7                         21                           28
  CLUS_8                          1                           17
  CLUS_9                         23                           31
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       73    112     53
  DEL PEAK 31(13Q34) WILD-TYPE    116    116     40
D60V9, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         73                          116
  CLUS_2                        112                          116
  CLUS_3                         53                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(13Q34) MUTATED       31    107     53     47
  DEL PEAK 31(13Q34) WILD-TYPE     40     91     88     53
D60V10, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         31                           40
  CLUS_2                        107                           91
  CLUS_3                         53                           88
  CLUS_4                         47                           53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       60     99     46
  DEL PEAK 31(13Q34) WILD-TYPE     85     99     45
D60V11, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         60                           85
  CLUS_2                         99                           99
  CLUS_3                         46                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(13Q34) MUTATED       37    130     38
  DEL PEAK 31(13Q34) WILD-TYPE     66    118     45
D60V12, multiclass
        clus
vv       DEL PEAK 31(13Q34) MUTATED DEL PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         37                           66
  CLUS_2                        130                          118
  CLUS_3                         38                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q32.33) MUTATED        1      3      3      3
  DEL PEAK 32(14Q32.33) WILD-TYPE      4      6      9      3
D61V1, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             3                               6
  CLUS_3                             3                               9
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.33) MUTATED        3      3      4
  DEL PEAK 32(14Q32.33) WILD-TYPE     11      8      3
D61V2, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             3                               8
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.33) MUTATED       70     51     29
  DEL PEAK 32(14Q32.33) WILD-TYPE    121    178     66
D61V3, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            70                             121
  CLUS_2                            51                             178
  CLUS_3                            29                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q32.33) MUTATED       26     40     32     30
  DEL PEAK 32(14Q32.33) WILD-TYPE     70     85     76     86
D61V4, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            26                              70
  CLUS_2                            40                              85
  CLUS_3                            32                              76
  CLUS_4                            30                              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.33) MUTATED       12     21     15
  DEL PEAK 32(14Q32.33) WILD-TYPE     32     52     49
D61V5, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            12                              32
  CLUS_2                            21                              52
  CLUS_3                            15                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(14Q32.33) MUTATED        8      7     17      9      7
  DEL PEAK 32(14Q32.33) WILD-TYPE     32     26     28     22     25
D61V6, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                             8                              32
  CLUS_2                             7                              26
  CLUS_3                            17                              28
  CLUS_4                             9                              22
  CLUS_5                             7                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(14Q32.33) MUTATED       38     30     31     31     13
  DEL PEAK 32(14Q32.33) WILD-TYPE    100     82     45     75     41
D61V7, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            38                             100
  CLUS_2                            30                              82
  CLUS_3                            31                              45
  CLUS_4                            31                              75
  CLUS_5                            13                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(14Q32.33) MUTATED       25     13      9     27     12     16
  DEL PEAK 32(14Q32.33) WILD-TYPE     58     44     35     57     34     35
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(14Q32.33) MUTATED       24      3     14
  DEL PEAK 32(14Q32.33) WILD-TYPE     25     15     40
D61V8, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            25                              58
  CLUS_2                            13                              44
  CLUS_3                             9                              35
  CLUS_4                            27                              57
  CLUS_5                            12                              34
  CLUS_6                            16                              35
  CLUS_7                            24                              25
  CLUS_8                             3                              15
  CLUS_9                            14                              40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.33) MUTATED       51     80     19
  DEL PEAK 32(14Q32.33) WILD-TYPE    138    148     74
D61V9, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            51                             138
  CLUS_2                            80                             148
  CLUS_3                            19                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(14Q32.33) MUTATED       23     58     34     35
  DEL PEAK 32(14Q32.33) WILD-TYPE     48    140    107     65
D61V10, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                            58                             140
  CLUS_3                            34                             107
  CLUS_4                            35                              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.33) MUTATED       49     58     21
  DEL PEAK 32(14Q32.33) WILD-TYPE     96    140     70
D61V11, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            49                              96
  CLUS_2                            58                             140
  CLUS_3                            21                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(14Q32.33) MUTATED       22     83     23
  DEL PEAK 32(14Q32.33) WILD-TYPE     81    165     60
D61V12, multiclass
        clus
vv       DEL PEAK 32(14Q32.33) MUTATED DEL PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            22                              81
  CLUS_2                            83                             165
  CLUS_3                            23                              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q11.2) MUTATED        4      7      4      4
  DEL PEAK 33(15Q11.2) WILD-TYPE      1      2      8      2
D62V1, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            7                              2
  CLUS_3                            4                              8
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED        6      8      5
  DEL PEAK 33(15Q11.2) WILD-TYPE      8      3      2
D62V2, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            8                              3
  CLUS_3                            5                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED      126     78     59
  DEL PEAK 33(15Q11.2) WILD-TYPE     65    151     36
D62V3, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                          126                             65
  CLUS_2                           78                            151
  CLUS_3                           59                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q11.2) MUTATED       34     68     68     53
  DEL PEAK 33(15Q11.2) WILD-TYPE     62     57     40     63
D62V4, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           34                             62
  CLUS_2                           68                             57
  CLUS_3                           68                             40
  CLUS_4                           53                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       16     44     30
  DEL PEAK 33(15Q11.2) WILD-TYPE     28     29     34
D62V5, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           16                             28
  CLUS_2                           44                             29
  CLUS_3                           30                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q11.2) MUTATED       25      9     29     10     17
  DEL PEAK 33(15Q11.2) WILD-TYPE     15     24     16     21     15
D62V6, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           25                             15
  CLUS_2                            9                             24
  CLUS_3                           29                             16
  CLUS_4                           10                             21
  CLUS_5                           17                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q11.2) MUTATED       96     43     15     68     26
  DEL PEAK 33(15Q11.2) WILD-TYPE     42     69     61     38     28
D62V7, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           96                             42
  CLUS_2                           43                             69
  CLUS_3                           15                             61
  CLUS_4                           68                             38
  CLUS_5                           26                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q11.2) MUTATED       55     26     30     54     11     35
  DEL PEAK 33(15Q11.2) WILD-TYPE     28     31     14     30     35     16
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(15Q11.2) MUTATED       10      0     27
  DEL PEAK 33(15Q11.2) WILD-TYPE     39     18     27
D62V8, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           55                             28
  CLUS_2                           26                             31
  CLUS_3                           30                             14
  CLUS_4                           54                             30
  CLUS_5                           11                             35
  CLUS_6                           35                             16
  CLUS_7                           10                             39
  CLUS_8                            0                             18
  CLUS_9                           27                             27
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       71    134     56
  DEL PEAK 33(15Q11.2) WILD-TYPE    118     94     37
D62V9, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           71                            118
  CLUS_2                          134                             94
  CLUS_3                           56                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q11.2) MUTATED       30    116     61     54
  DEL PEAK 33(15Q11.2) WILD-TYPE     41     82     80     46
D62V10, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           30                             41
  CLUS_2                          116                             82
  CLUS_3                           61                             80
  CLUS_4                           54                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       66    107     48
  DEL PEAK 33(15Q11.2) WILD-TYPE     79     91     43
D62V11, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           66                             79
  CLUS_2                          107                             91
  CLUS_3                           48                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q11.2) MUTATED       32    138     51
  DEL PEAK 33(15Q11.2) WILD-TYPE     71    110     32
D62V12, multiclass
        clus
vv       DEL PEAK 33(15Q11.2) MUTATED DEL PEAK 33(15Q11.2) WILD-TYPE
  CLUS_1                           32                             71
  CLUS_2                          138                            110
  CLUS_3                           51                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 34(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16Q23.1) MUTATED        4      2      2      1
  DEL PEAK 34(16Q23.1) WILD-TYPE      1      7     10      5
D63V1, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              7
  CLUS_3                            2                             10
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED        3      4      2
  DEL PEAK 34(16Q23.1) WILD-TYPE     11      7      5
D63V2, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              7
  CLUS_3                            2                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       79     48     42
  DEL PEAK 34(16Q23.1) WILD-TYPE    112    181     53
D63V3, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           79                            112
  CLUS_2                           48                            181
  CLUS_3                           42                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16Q23.1) MUTATED       17     47     50     32
  DEL PEAK 34(16Q23.1) WILD-TYPE     79     78     58     84
D63V4, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           17                             79
  CLUS_2                           47                             78
  CLUS_3                           50                             58
  CLUS_4                           32                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       10     23     25
  DEL PEAK 34(16Q23.1) WILD-TYPE     34     50     39
D63V5, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           10                             34
  CLUS_2                           23                             50
  CLUS_3                           25                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED        7     10     26      7      8
  DEL PEAK 34(16Q23.1) WILD-TYPE     33     23     19     24     24
D63V6, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                            7                             33
  CLUS_2                           10                             23
  CLUS_3                           26                             19
  CLUS_4                            7                             24
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16Q23.1) MUTATED       69     19     26     40     11
  DEL PEAK 34(16Q23.1) WILD-TYPE     69     93     50     66     43
D63V7, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           69                             69
  CLUS_2                           19                             93
  CLUS_3                           26                             50
  CLUS_4                           40                             66
  CLUS_5                           11                             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16Q23.1) MUTATED       42     10     24     35      9     17
  DEL PEAK 34(16Q23.1) WILD-TYPE     41     47     20     49     37     34
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(16Q23.1) MUTATED       17      0     11
  DEL PEAK 34(16Q23.1) WILD-TYPE     32     18     43
D63V8, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           42                             41
  CLUS_2                           10                             47
  CLUS_3                           24                             20
  CLUS_4                           35                             49
  CLUS_5                            9                             37
  CLUS_6                           17                             34
  CLUS_7                           17                             32
  CLUS_8                            0                             18
  CLUS_9                           11                             43
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       49     86     34
  DEL PEAK 34(16Q23.1) WILD-TYPE    140    142     59
D63V9, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           49                            140
  CLUS_2                           86                            142
  CLUS_3                           34                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16Q23.1) MUTATED       19     77     32     41
  DEL PEAK 34(16Q23.1) WILD-TYPE     52    121    109     59
D63V10, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           19                             52
  CLUS_2                           77                            121
  CLUS_3                           32                            109
  CLUS_4                           41                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       46     67     28
  DEL PEAK 34(16Q23.1) WILD-TYPE     99    131     63
D63V11, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           46                             99
  CLUS_2                           67                            131
  CLUS_3                           28                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16Q23.1) MUTATED       18     94     29
  DEL PEAK 34(16Q23.1) WILD-TYPE     85    154     54
D63V12, multiclass
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           94                            154
  CLUS_3                           29                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 35(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(17P13.3) MUTATED        5      6      7      5
  DEL PEAK 35(17P13.3) WILD-TYPE      0      3      5      1
D64V1, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                            5                              0
  CLUS_2                            6                              3
  CLUS_3                            7                              5
  CLUS_4                            5                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P13.3) MUTATED        9      8      6
  DEL PEAK 35(17P13.3) WILD-TYPE      5      3      1
D64V2, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            8                              3
  CLUS_3                            6                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P13.3) MUTATED      149     78     51
  DEL PEAK 35(17P13.3) WILD-TYPE     42    151     44
D64V3, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                          149                             42
  CLUS_2                           78                            151
  CLUS_3                           51                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(17P13.3) MUTATED       34     69     79     55
  DEL PEAK 35(17P13.3) WILD-TYPE     62     56     29     61
D64V4, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           34                             62
  CLUS_2                           69                             56
  CLUS_3                           79                             29
  CLUS_4                           55                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P13.3) MUTATED       19     55     32
  DEL PEAK 35(17P13.3) WILD-TYPE     25     18     32
D64V5, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           19                             25
  CLUS_2                           55                             18
  CLUS_3                           32                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17P13.3) MUTATED       28     10     34     16     18
  DEL PEAK 35(17P13.3) WILD-TYPE     12     23     11     15     14
D64V6, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           28                             12
  CLUS_2                           10                             23
  CLUS_3                           34                             11
  CLUS_4                           16                             15
  CLUS_5                           18                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(17P13.3) MUTATED       98     42     36     61     24
  DEL PEAK 35(17P13.3) WILD-TYPE     40     70     40     45     30
D64V7, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           98                             40
  CLUS_2                           42                             70
  CLUS_3                           36                             40
  CLUS_4                           61                             45
  CLUS_5                           24                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(17P13.3) MUTATED       59     26     27     51     10     33
  DEL PEAK 35(17P13.3) WILD-TYPE     24     31     17     33     36     18
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(17P13.3) MUTATED       22      6     27
  DEL PEAK 35(17P13.3) WILD-TYPE     27     12     27
D64V8, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           59                             24
  CLUS_2                           26                             31
  CLUS_3                           27                             17
  CLUS_4                           51                             33
  CLUS_5                           10                             36
  CLUS_6                           33                             18
  CLUS_7                           22                             27
  CLUS_8                            6                             12
  CLUS_9                           27                             27
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P13.3) MUTATED       89    140     46
  DEL PEAK 35(17P13.3) WILD-TYPE    100     88     47
D64V9, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           89                            100
  CLUS_2                          140                             88
  CLUS_3                           46                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(17P13.3) MUTATED       31    117     66     61
  DEL PEAK 35(17P13.3) WILD-TYPE     40     81     75     39
D64V10, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           31                             40
  CLUS_2                          117                             81
  CLUS_3                           66                             75
  CLUS_4                           61                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P13.3) MUTATED       75    111     46
  DEL PEAK 35(17P13.3) WILD-TYPE     70     87     45
D64V11, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           75                             70
  CLUS_2                          111                             87
  CLUS_3                           46                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(17P13.3) MUTATED       39    147     46
  DEL PEAK 35(17P13.3) WILD-TYPE     64    101     37
D64V12, multiclass
        clus
vv       DEL PEAK 35(17P13.3) MUTATED DEL PEAK 35(17P13.3) WILD-TYPE
  CLUS_1                           39                             64
  CLUS_2                          147                            101
  CLUS_3                           46                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 36(18Q21.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q21.32) MUTATED        3      7      3      3
  DEL PEAK 36(18Q21.32) WILD-TYPE      2      2      9      3
D65V1, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             7                               2
  CLUS_3                             3                               9
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q21.32) MUTATED        4      8      4
  DEL PEAK 36(18Q21.32) WILD-TYPE     10      3      3
D65V2, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             8                               3
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q21.32) MUTATED      135     87     32
  DEL PEAK 36(18Q21.32) WILD-TYPE     56    142     63
D65V3, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                           135                              56
  CLUS_2                            87                             142
  CLUS_3                            32                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q21.32) MUTATED       46     60     58     55
  DEL PEAK 36(18Q21.32) WILD-TYPE     50     65     50     61
D65V4, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            46                              50
  CLUS_2                            60                              65
  CLUS_3                            58                              50
  CLUS_4                            55                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q21.32) MUTATED       17     47     31
  DEL PEAK 36(18Q21.32) WILD-TYPE     27     26     33
D65V5, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            17                              27
  CLUS_2                            47                              26
  CLUS_3                            31                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(18Q21.32) MUTATED       19     10     36     16     14
  DEL PEAK 36(18Q21.32) WILD-TYPE     21     23      9     15     18
D65V6, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            19                              21
  CLUS_2                            10                              23
  CLUS_3                            36                               9
  CLUS_4                            16                              15
  CLUS_5                            14                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(18Q21.32) MUTATED       91     42     40     42     23
  DEL PEAK 36(18Q21.32) WILD-TYPE     47     70     36     64     31
D65V7, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            91                              47
  CLUS_2                            42                              70
  CLUS_3                            40                              36
  CLUS_4                            42                              64
  CLUS_5                            23                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(18Q21.32) MUTATED       44     28     28     51      9     17
  DEL PEAK 36(18Q21.32) WILD-TYPE     39     29     16     33     37     34
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(18Q21.32) MUTATED       30      9     22
  DEL PEAK 36(18Q21.32) WILD-TYPE     19      9     32
D65V8, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            44                              39
  CLUS_2                            28                              29
  CLUS_3                            28                              16
  CLUS_4                            51                              33
  CLUS_5                             9                              37
  CLUS_6                            17                              34
  CLUS_7                            30                              19
  CLUS_8                             9                               9
  CLUS_9                            22                              32
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q21.32) MUTATED       78    118     55
  DEL PEAK 36(18Q21.32) WILD-TYPE    111    110     38
D65V9, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            78                             111
  CLUS_2                           118                             110
  CLUS_3                            55                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(18Q21.32) MUTATED       28    101     66     56
  DEL PEAK 36(18Q21.32) WILD-TYPE     43     97     75     44
D65V10, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            28                              43
  CLUS_2                           101                              97
  CLUS_3                            66                              75
  CLUS_4                            56                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q21.32) MUTATED       74     96     47
  DEL PEAK 36(18Q21.32) WILD-TYPE     71    102     44
D65V11, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            74                              71
  CLUS_2                            96                             102
  CLUS_3                            47                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(18Q21.32) MUTATED       41    133     43
  DEL PEAK 36(18Q21.32) WILD-TYPE     62    115     40
D65V12, multiclass
        clus
vv       DEL PEAK 36(18Q21.32) MUTATED DEL PEAK 36(18Q21.32) WILD-TYPE
  CLUS_1                            41                              62
  CLUS_2                           133                             115
  CLUS_3                            43                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 37(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q23) MUTATED        3      8      3      3
  DEL PEAK 37(18Q23) WILD-TYPE      2      1      9      3
D66V1, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          8                            1
  CLUS_3                          3                            9
  CLUS_4                          3                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q23) MUTATED        4      9      4
  DEL PEAK 37(18Q23) WILD-TYPE     10      2      3
D66V2, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          9                            2
  CLUS_3                          4                            3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q23) MUTATED      135     84     30
  DEL PEAK 37(18Q23) WILD-TYPE     56    145     65
D66V3, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                        135                           56
  CLUS_2                         84                          145
  CLUS_3                         30                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q23) MUTATED       44     57     58     55
  DEL PEAK 37(18Q23) WILD-TYPE     52     68     50     61
D66V4, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         44                           52
  CLUS_2                         57                           68
  CLUS_3                         58                           50
  CLUS_4                         55                           61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q23) MUTATED       15     46     29
  DEL PEAK 37(18Q23) WILD-TYPE     29     27     35
D66V5, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         15                           29
  CLUS_2                         46                           27
  CLUS_3                         29                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18Q23) MUTATED       17      8     35     16     14
  DEL PEAK 37(18Q23) WILD-TYPE     23     25     10     15     18
D66V6, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         17                           23
  CLUS_2                          8                           25
  CLUS_3                         35                           10
  CLUS_4                         16                           15
  CLUS_5                         14                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(18Q23) MUTATED       92     42     40     38     23
  DEL PEAK 37(18Q23) WILD-TYPE     46     70     36     68     31
D66V7, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         92                           46
  CLUS_2                         42                           70
  CLUS_3                         40                           36
  CLUS_4                         38                           68
  CLUS_5                         23                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 37(18Q23) MUTATED       42     27     29     50      9     17     30
  DEL PEAK 37(18Q23) WILD-TYPE     41     30     15     34     37     34     19
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 37(18Q23) MUTATED        9     22
  DEL PEAK 37(18Q23) WILD-TYPE      9     32
D66V8, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         42                           41
  CLUS_2                         27                           30
  CLUS_3                         29                           15
  CLUS_4                         50                           34
  CLUS_5                          9                           37
  CLUS_6                         17                           34
  CLUS_7                         30                           19
  CLUS_8                          9                            9
  CLUS_9                         22                           32
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q23) MUTATED       76    115     55
  DEL PEAK 37(18Q23) WILD-TYPE    113    113     38
D66V9, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         76                          113
  CLUS_2                        115                          113
  CLUS_3                         55                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(18Q23) MUTATED       28    101     63     54
  DEL PEAK 37(18Q23) WILD-TYPE     43     97     78     46
D66V10, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         28                           43
  CLUS_2                        101                           97
  CLUS_3                         63                           78
  CLUS_4                         54                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q23) MUTATED       70     94     47
  DEL PEAK 37(18Q23) WILD-TYPE     75    104     44
D66V11, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         70                           75
  CLUS_2                         94                          104
  CLUS_3                         47                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(18Q23) MUTATED       40    131     40
  DEL PEAK 37(18Q23) WILD-TYPE     63    117     43
D66V12, multiclass
        clus
vv       DEL PEAK 37(18Q23) MUTATED DEL PEAK 37(18Q23) WILD-TYPE
  CLUS_1                         40                           63
  CLUS_2                        131                          117
  CLUS_3                         40                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 38(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19P13.3) MUTATED        1      4      5      4
  DEL PEAK 38(19P13.3) WILD-TYPE      4      5      7      2
D67V1, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            5                              7
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED        6      4      4
  DEL PEAK 38(19P13.3) WILD-TYPE      8      7      3
D67V2, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            4                              7
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED      118     87     70
  DEL PEAK 38(19P13.3) WILD-TYPE     73    142     25
D67V3, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                          118                             73
  CLUS_2                           87                            142
  CLUS_3                           70                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19P13.3) MUTATED       41     95     48     53
  DEL PEAK 38(19P13.3) WILD-TYPE     55     30     60     63
D67V4, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           41                             55
  CLUS_2                           95                             30
  CLUS_3                           48                             60
  CLUS_4                           53                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       25     40     30
  DEL PEAK 38(19P13.3) WILD-TYPE     19     33     34
D67V5, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           25                             19
  CLUS_2                           40                             33
  CLUS_3                           30                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19P13.3) MUTATED       19     23     24     15     14
  DEL PEAK 38(19P13.3) WILD-TYPE     21     10     21     16     18
D67V6, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           19                             21
  CLUS_2                           23                             10
  CLUS_3                           24                             21
  CLUS_4                           15                             16
  CLUS_5                           14                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(19P13.3) MUTATED       70     49     50     76     17
  DEL PEAK 38(19P13.3) WILD-TYPE     68     63     26     30     37
D67V7, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           70                             68
  CLUS_2                           49                             63
  CLUS_3                           50                             26
  CLUS_4                           76                             30
  CLUS_5                           17                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(19P13.3) MUTATED       29     20     22     56     37     34
  DEL PEAK 38(19P13.3) WILD-TYPE     54     37     22     28      9     17
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(19P13.3) MUTATED       43      4     17
  DEL PEAK 38(19P13.3) WILD-TYPE      6     14     37
D67V8, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           29                             54
  CLUS_2                           20                             37
  CLUS_3                           22                             22
  CLUS_4                           56                             28
  CLUS_5                           37                              9
  CLUS_6                           34                             17
  CLUS_7                           43                              6
  CLUS_8                            4                             14
  CLUS_9                           17                             37
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       78    151     41
  DEL PEAK 38(19P13.3) WILD-TYPE    111     77     52
D67V9, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           78                            111
  CLUS_2                          151                             77
  CLUS_3                           41                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(19P13.3) MUTATED       35    113     49     73
  DEL PEAK 38(19P13.3) WILD-TYPE     36     85     92     27
D67V10, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           35                             36
  CLUS_2                          113                             85
  CLUS_3                           49                             92
  CLUS_4                           73                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       80    112     40
  DEL PEAK 38(19P13.3) WILD-TYPE     65     86     51
D67V11, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           80                             65
  CLUS_2                          112                             86
  CLUS_3                           40                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(19P13.3) MUTATED       46    153     33
  DEL PEAK 38(19P13.3) WILD-TYPE     57     95     50
D67V12, multiclass
        clus
vv       DEL PEAK 38(19P13.3) MUTATED DEL PEAK 38(19P13.3) WILD-TYPE
  CLUS_1                           46                             57
  CLUS_2                          153                             95
  CLUS_3                           33                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 39(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.2) MUTATED        1      5      5      3
  DEL PEAK 39(19P13.2) WILD-TYPE      4      4      7      3
D68V1, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED        6      5      3
  DEL PEAK 39(19P13.2) WILD-TYPE      8      6      4
D68V2, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            5                              6
  CLUS_3                            3                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED      117     84     67
  DEL PEAK 39(19P13.2) WILD-TYPE     74    145     28
D68V3, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                          117                             74
  CLUS_2                           84                            145
  CLUS_3                           67                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.2) MUTATED       38     95     50     49
  DEL PEAK 39(19P13.2) WILD-TYPE     58     30     58     67
D68V4, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           38                             58
  CLUS_2                           95                             30
  CLUS_3                           50                             58
  CLUS_4                           49                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       24     37     32
  DEL PEAK 39(19P13.2) WILD-TYPE     20     36     32
D68V5, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           24                             20
  CLUS_2                           37                             36
  CLUS_3                           32                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(19P13.2) MUTATED       16     23     25     16     13
  DEL PEAK 39(19P13.2) WILD-TYPE     24     10     20     15     19
D68V6, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                           23                             10
  CLUS_3                           25                             20
  CLUS_4                           16                             15
  CLUS_5                           13                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(19P13.2) MUTATED       71     47     45     77     17
  DEL PEAK 39(19P13.2) WILD-TYPE     67     65     31     29     37
D68V7, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           71                             67
  CLUS_2                           47                             65
  CLUS_3                           45                             31
  CLUS_4                           77                             29
  CLUS_5                           17                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(19P13.2) MUTATED       31     18     23     48     36     40
  DEL PEAK 39(19P13.2) WILD-TYPE     52     39     21     36     10     11
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 39(19P13.2) MUTATED       39      4     18
  DEL PEAK 39(19P13.2) WILD-TYPE     10     14     36
D68V8, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           31                             52
  CLUS_2                           18                             39
  CLUS_3                           23                             21
  CLUS_4                           48                             36
  CLUS_5                           36                             10
  CLUS_6                           40                             11
  CLUS_7                           39                             10
  CLUS_8                            4                             14
  CLUS_9                           18                             36
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       76    148     39
  DEL PEAK 39(19P13.2) WILD-TYPE    113     80     54
D68V9, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           76                            113
  CLUS_2                          148                             80
  CLUS_3                           39                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(19P13.2) MUTATED       36    108     47     72
  DEL PEAK 39(19P13.2) WILD-TYPE     35     90     94     28
D68V10, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           36                             35
  CLUS_2                          108                             90
  CLUS_3                           47                             94
  CLUS_4                           72                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       76    113     38
  DEL PEAK 39(19P13.2) WILD-TYPE     69     85     53
D68V11, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           76                             69
  CLUS_2                          113                             85
  CLUS_3                           38                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(19P13.2) MUTATED       43    152     32
  DEL PEAK 39(19P13.2) WILD-TYPE     60     96     51
D68V12, multiclass
        clus
vv       DEL PEAK 39(19P13.2) MUTATED DEL PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           43                             60
  CLUS_2                          152                             96
  CLUS_3                           32                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 40(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19Q13.33) MUTATED        2      6      3      3
  DEL PEAK 40(19Q13.33) WILD-TYPE      3      3      9      3
D69V1, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             6                               3
  CLUS_3                             3                               9
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19Q13.33) MUTATED        4      7      3
  DEL PEAK 40(19Q13.33) WILD-TYPE     10      4      4
D69V2, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             7                               4
  CLUS_3                             3                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19Q13.33) MUTATED       98     52     44
  DEL PEAK 40(19Q13.33) WILD-TYPE     93    177     51
D69V3, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            98                              93
  CLUS_2                            52                             177
  CLUS_3                            44                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19Q13.33) MUTATED       28     60     44     29
  DEL PEAK 40(19Q13.33) WILD-TYPE     68     65     64     87
D69V4, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            28                              68
  CLUS_2                            60                              65
  CLUS_3                            44                              64
  CLUS_4                            29                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19Q13.33) MUTATED       15     33     20
  DEL PEAK 40(19Q13.33) WILD-TYPE     29     40     44
D69V5, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            15                              29
  CLUS_2                            33                              40
  CLUS_3                            20                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(19Q13.33) MUTATED       13     15     22      9      9
  DEL PEAK 40(19Q13.33) WILD-TYPE     27     18     23     22     23
D69V6, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            13                              27
  CLUS_2                            15                              18
  CLUS_3                            22                              23
  CLUS_4                             9                              22
  CLUS_5                             9                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(19Q13.33) MUTATED       61     33     27     52     12
  DEL PEAK 40(19Q13.33) WILD-TYPE     77     79     49     54     42
D69V7, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            61                              77
  CLUS_2                            33                              79
  CLUS_3                            27                              49
  CLUS_4                            52                              54
  CLUS_5                            12                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(19Q13.33) MUTATED       29     16     21     40     22     24
  DEL PEAK 40(19Q13.33) WILD-TYPE     54     41     23     44     24     27
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 40(19Q13.33) MUTATED       23      0     10
  DEL PEAK 40(19Q13.33) WILD-TYPE     26     18     44
D69V8, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            29                              54
  CLUS_2                            16                              41
  CLUS_3                            21                              23
  CLUS_4                            40                              44
  CLUS_5                            22                              24
  CLUS_6                            24                              27
  CLUS_7                            23                              26
  CLUS_8                             0                              18
  CLUS_9                            10                              44
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19Q13.33) MUTATED       47    108     35
  DEL PEAK 40(19Q13.33) WILD-TYPE    142    120     58
D69V9, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            47                             142
  CLUS_2                           108                             120
  CLUS_3                            35                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(19Q13.33) MUTATED       23     87     28     52
  DEL PEAK 40(19Q13.33) WILD-TYPE     48    111    113     48
D69V10, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            23                              48
  CLUS_2                            87                             111
  CLUS_3                            28                             113
  CLUS_4                            52                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19Q13.33) MUTATED       49     76     30
  DEL PEAK 40(19Q13.33) WILD-TYPE     96    122     61
D69V11, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            49                              96
  CLUS_2                            76                             122
  CLUS_3                            30                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(19Q13.33) MUTATED       27    103     25
  DEL PEAK 40(19Q13.33) WILD-TYPE     76    145     58
D69V12, multiclass
        clus
vv       DEL PEAK 40(19Q13.33) MUTATED DEL PEAK 40(19Q13.33) WILD-TYPE
  CLUS_1                            27                              76
  CLUS_2                           103                             145
  CLUS_3                            25                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 41(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(20P13) MUTATED        3      4      1      2
  DEL PEAK 41(20P13) WILD-TYPE      2      5     11      4
D70V1, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          4                            5
  CLUS_3                          1                           11
  CLUS_4                          2                            4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(20P13) MUTATED        2      5      3
  DEL PEAK 41(20P13) WILD-TYPE     12      6      4
D70V2, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          5                            6
  CLUS_3                          3                            4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(20P13) MUTATED       73     38     19
  DEL PEAK 41(20P13) WILD-TYPE    118    191     76
D70V3, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         73                          118
  CLUS_2                         38                          191
  CLUS_3                         19                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(20P13) MUTATED       18     24     42     29
  DEL PEAK 41(20P13) WILD-TYPE     78    101     66     87
D70V4, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         18                           78
  CLUS_2                         24                          101
  CLUS_3                         42                           66
  CLUS_4                         29                           87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(20P13) MUTATED        6     30     15
  DEL PEAK 41(20P13) WILD-TYPE     38     43     49
D70V5, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                          6                           38
  CLUS_2                         30                           43
  CLUS_3                         15                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(20P13) MUTATED       15      2     21      7      6
  DEL PEAK 41(20P13) WILD-TYPE     25     31     24     24     26
D70V6, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         15                           25
  CLUS_2                          2                           31
  CLUS_3                         21                           24
  CLUS_4                          7                           24
  CLUS_5                          6                           26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(20P13) MUTATED       56     23     21     14     12
  DEL PEAK 41(20P13) WILD-TYPE     82     89     55     92     42
D70V7, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         56                           82
  CLUS_2                         23                           89
  CLUS_3                         21                           55
  CLUS_4                         14                           92
  CLUS_5                         12                           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 41(20P13) MUTATED       32     16     20     15      0     10     16
  DEL PEAK 41(20P13) WILD-TYPE     51     41     24     69     46     41     33
                              vv
clus                           CLUS_8 CLUS_9
  DEL PEAK 41(20P13) MUTATED        3     14
  DEL PEAK 41(20P13) WILD-TYPE     15     40
D70V8, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         32                           51
  CLUS_2                         16                           41
  CLUS_3                         20                           24
  CLUS_4                         15                           69
  CLUS_5                          0                           46
  CLUS_6                         10                           41
  CLUS_7                         16                           33
  CLUS_8                          3                           15
  CLUS_9                         14                           40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(20P13) MUTATED       48     57     22
  DEL PEAK 41(20P13) WILD-TYPE    141    171     71
D70V9, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         48                          141
  CLUS_2                         57                          171
  CLUS_3                         22                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(20P13) MUTATED       17     55     32     23
  DEL PEAK 41(20P13) WILD-TYPE     54    143    109     77
D70V10, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         17                           54
  CLUS_2                         55                          143
  CLUS_3                         32                          109
  CLUS_4                         23                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(20P13) MUTATED       38     51     17
  DEL PEAK 41(20P13) WILD-TYPE    107    147     74
D70V11, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         38                          107
  CLUS_2                         51                          147
  CLUS_3                         17                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(20P13) MUTATED       15     65     26
  DEL PEAK 41(20P13) WILD-TYPE     88    183     57
D70V12, multiclass
        clus
vv       DEL PEAK 41(20P13) MUTATED DEL PEAK 41(20P13) WILD-TYPE
  CLUS_1                         15                           88
  CLUS_2                         65                          183
  CLUS_3                         26                           57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 42(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20Q13.12) MUTATED        3      2      3      0
  DEL PEAK 42(20Q13.12) WILD-TYPE      2      7      9      6
D71V1, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             2                               7
  CLUS_3                             3                               9
  CLUS_4                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20Q13.12) MUTATED        5      2      1
  DEL PEAK 42(20Q13.12) WILD-TYPE      9      9      6
D71V2, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                             2                               9
  CLUS_3                             1                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20Q13.12) MUTATED       30     33     19
  DEL PEAK 42(20Q13.12) WILD-TYPE    161    196     76
D71V3, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            30                             161
  CLUS_2                            33                             196
  CLUS_3                            19                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20Q13.12) MUTATED       19     19     18     12
  DEL PEAK 42(20Q13.12) WILD-TYPE     77    106     90    104
D71V4, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            19                              77
  CLUS_2                            19                             106
  CLUS_3                            18                              90
  CLUS_4                            12                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20Q13.12) MUTATED        7     18      7
  DEL PEAK 42(20Q13.12) WILD-TYPE     37     55     57
D71V5, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                             7                              37
  CLUS_2                            18                              55
  CLUS_3                             7                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20Q13.12) MUTATED       11      8      7      4      2
  DEL PEAK 42(20Q13.12) WILD-TYPE     29     25     38     27     30
D71V6, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            11                              29
  CLUS_2                             8                              25
  CLUS_3                             7                              38
  CLUS_4                             4                              27
  CLUS_5                             2                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(20Q13.12) MUTATED       20     26     14     16      5
  DEL PEAK 42(20Q13.12) WILD-TYPE    118     86     62     90     49
D71V7, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            20                             118
  CLUS_2                            26                              86
  CLUS_3                            14                              62
  CLUS_4                            16                              90
  CLUS_5                             5                              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(20Q13.12) MUTATED       15     12      7      5     12      9
  DEL PEAK 42(20Q13.12) WILD-TYPE     68     45     37     79     34     42
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 42(20Q13.12) MUTATED       12      1      8
  DEL PEAK 42(20Q13.12) WILD-TYPE     37     17     46
D71V8, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            15                              68
  CLUS_2                            12                              45
  CLUS_3                             7                              37
  CLUS_4                             5                              79
  CLUS_5                            12                              34
  CLUS_6                             9                              42
  CLUS_7                            12                              37
  CLUS_8                             1                              17
  CLUS_9                             8                              46
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20Q13.12) MUTATED       35     38      9
  DEL PEAK 42(20Q13.12) WILD-TYPE    154    190     84
D71V9, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            35                             154
  CLUS_2                            38                             190
  CLUS_3                             9                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(20Q13.12) MUTATED       18     29     22     13
  DEL PEAK 42(20Q13.12) WILD-TYPE     53    169    119     87
D71V10, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            18                              53
  CLUS_2                            29                             169
  CLUS_3                            22                             119
  CLUS_4                            13                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20Q13.12) MUTATED       28     30      7
  DEL PEAK 42(20Q13.12) WILD-TYPE    117    168     84
D71V11, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            28                             117
  CLUS_2                            30                             168
  CLUS_3                             7                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(20Q13.12) MUTATED       20     36      9
  DEL PEAK 42(20Q13.12) WILD-TYPE     83    212     74
D71V12, multiclass
        clus
vv       DEL PEAK 42(20Q13.12) MUTATED DEL PEAK 42(20Q13.12) WILD-TYPE
  CLUS_1                            20                              83
  CLUS_2                            36                             212
  CLUS_3                             9                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 43(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED        1      2      1      4
  DEL PEAK 43(21Q11.2) WILD-TYPE      4      7     11      2
D72V1, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED        1      3      4
  DEL PEAK 43(21Q11.2) WILD-TYPE     13      8      3
D72V2, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              8
  CLUS_3                            4                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       57     64     55
  DEL PEAK 43(21Q11.2) WILD-TYPE    134    165     40
D72V3, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           57                            134
  CLUS_2                           64                            165
  CLUS_3                           55                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED       16     55     38     37
  DEL PEAK 43(21Q11.2) WILD-TYPE     80     70     70     79
D72V4, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           16                             80
  CLUS_2                           55                             70
  CLUS_3                           38                             70
  CLUS_4                           37                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED        8     27     29
  DEL PEAK 43(21Q11.2) WILD-TYPE     36     46     35
D72V5, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                            8                             36
  CLUS_2                           27                             46
  CLUS_3                           29                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED       12     11     17     16      8
  DEL PEAK 43(21Q11.2) WILD-TYPE     28     22     28     15     24
D72V6, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           12                             28
  CLUS_2                           11                             22
  CLUS_3                           17                             28
  CLUS_4                           16                             15
  CLUS_5                            8                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(21Q11.2) MUTATED       49     13     30     59     12
  DEL PEAK 43(21Q11.2) WILD-TYPE     89     99     46     47     42
D72V7, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           49                             89
  CLUS_2                           13                             99
  CLUS_3                           30                             46
  CLUS_4                           59                             47
  CLUS_5                           12                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(21Q11.2) MUTATED       18      9     18     33     10     34
  DEL PEAK 43(21Q11.2) WILD-TYPE     65     48     26     51     36     17
                                vv
clus                             CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 43(21Q11.2) MUTATED       24      3     14
  DEL PEAK 43(21Q11.2) WILD-TYPE     25     15     40
D72V8, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           18                             65
  CLUS_2                            9                             48
  CLUS_3                           18                             26
  CLUS_4                           33                             51
  CLUS_5                           10                             36
  CLUS_6                           34                             17
  CLUS_7                           24                             25
  CLUS_8                            3                             15
  CLUS_9                           14                             40
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       41    108     24
  DEL PEAK 43(21Q11.2) WILD-TYPE    148    120     69
D72V9, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           41                            148
  CLUS_2                          108                            120
  CLUS_3                           24                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(21Q11.2) MUTATED       16     73     32     52
  DEL PEAK 43(21Q11.2) WILD-TYPE     55    125    109     48
D72V10, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           16                             55
  CLUS_2                           73                            125
  CLUS_3                           32                            109
  CLUS_4                           52                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       45     73     29
  DEL PEAK 43(21Q11.2) WILD-TYPE    100    125     62
D72V11, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           45                            100
  CLUS_2                           73                            125
  CLUS_3                           29                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(21Q11.2) MUTATED       18    106     23
  DEL PEAK 43(21Q11.2) WILD-TYPE     85    142     60
D72V12, multiclass
        clus
vv       DEL PEAK 43(21Q11.2) MUTATED DEL PEAK 43(21Q11.2) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                          106                            142
  CLUS_3                           23                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 44(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED        3      7      2      4
  DEL PEAK 44(22Q13.32) WILD-TYPE      2      2     10      2
D73V1, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             7                               2
  CLUS_3                             2                              10
  CLUS_4                             4                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED        4      8      4
  DEL PEAK 44(22Q13.32) WILD-TYPE     10      3      3
D73V2, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             8                               3
  CLUS_3                             4                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED      116     65     69
  DEL PEAK 44(22Q13.32) WILD-TYPE     75    164     26
D73V3, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                           116                              75
  CLUS_2                            65                             164
  CLUS_3                            69                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       25     75     67     49
  DEL PEAK 44(22Q13.32) WILD-TYPE     71     50     41     67
D73V4, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            25                              71
  CLUS_2                            75                              50
  CLUS_3                            67                              41
  CLUS_4                            49                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       18     35     31
  DEL PEAK 44(22Q13.32) WILD-TYPE     26     38     33
D73V5, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            18                              26
  CLUS_2                            35                              38
  CLUS_3                            31                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED       16     13     26     15     14
  DEL PEAK 44(22Q13.32) WILD-TYPE     24     20     19     16     18
D73V6, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            16                              24
  CLUS_2                            13                              20
  CLUS_3                            26                              19
  CLUS_4                            15                              16
  CLUS_5                            14                              18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(22Q13.32) MUTATED       80     33     36     74     12
  DEL PEAK 44(22Q13.32) WILD-TYPE     58     79     40     32     42
D73V7, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            80                              58
  CLUS_2                            33                              79
  CLUS_3                            36                              40
  CLUS_4                            74                              32
  CLUS_5                            12                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(22Q13.32) MUTATED       52     14     24     47     14     39
  DEL PEAK 44(22Q13.32) WILD-TYPE     31     43     20     37     32     12
                                 vv
clus                              CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 44(22Q13.32) MUTATED       28      4     13
  DEL PEAK 44(22Q13.32) WILD-TYPE     21     14     41
D73V8, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            52                              31
  CLUS_2                            14                              43
  CLUS_3                            24                              20
  CLUS_4                            47                              37
  CLUS_5                            14                              32
  CLUS_6                            39                              12
  CLUS_7                            28                              21
  CLUS_8                             4                              14
  CLUS_9                            13                              41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       65    138     44
  DEL PEAK 44(22Q13.32) WILD-TYPE    124     90     49
D73V9, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            65                             124
  CLUS_2                           138                              90
  CLUS_3                            44                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(22Q13.32) MUTATED       24    116     46     61
  DEL PEAK 44(22Q13.32) WILD-TYPE     47     82     95     39
D73V10, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            24                              47
  CLUS_2                           116                              82
  CLUS_3                            46                              95
  CLUS_4                            61                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       67    109     34
  DEL PEAK 44(22Q13.32) WILD-TYPE     78     89     57
D73V11, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            67                              78
  CLUS_2                           109                              89
  CLUS_3                            34                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(22Q13.32) MUTATED       32    144     34
  DEL PEAK 44(22Q13.32) WILD-TYPE     71    104     49
D73V12, multiclass
        clus
vv       DEL PEAK 44(22Q13.32) MUTATED DEL PEAK 44(22Q13.32) WILD-TYPE
  CLUS_1                            32                              71
  CLUS_2                           144                             104
  CLUS_3                            34                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 45(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XP22.2) MUTATED        2      2      4      3
  DEL PEAK 45(XP22.2) WILD-TYPE      3      7      8      3
D74V1, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           2                             7
  CLUS_3                           4                             8
  CLUS_4                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XP22.2) MUTATED        5      3      3
  DEL PEAK 45(XP22.2) WILD-TYPE      9      8      4
D74V2, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           3                             8
  CLUS_3                           3                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XP22.2) MUTATED       82     37     25
  DEL PEAK 45(XP22.2) WILD-TYPE    109    192     70
D74V3, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          82                           109
  CLUS_2                          37                           192
  CLUS_3                          25                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XP22.2) MUTATED       21     32     45     24
  DEL PEAK 45(XP22.2) WILD-TYPE     75     93     63     92
D74V4, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          21                            75
  CLUS_2                          32                            93
  CLUS_3                          45                            63
  CLUS_4                          24                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XP22.2) MUTATED        6     23     16
  DEL PEAK 45(XP22.2) WILD-TYPE     38     50     48
D74V5, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                           6                            38
  CLUS_2                          23                            50
  CLUS_3                          16                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(XP22.2) MUTATED        7      3     19      7      9
  DEL PEAK 45(XP22.2) WILD-TYPE     33     30     26     24     23
D74V6, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                           7                            33
  CLUS_2                           3                            30
  CLUS_3                          19                            26
  CLUS_4                           7                            24
  CLUS_5                           9                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(XP22.2) MUTATED       59     28     13     25     10
  DEL PEAK 45(XP22.2) WILD-TYPE     79     84     63     81     44
D74V7, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          59                            79
  CLUS_2                          28                            84
  CLUS_3                          13                            63
  CLUS_4                          25                            81
  CLUS_5                          10                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(XP22.2) MUTATED       36     16     18     27      8      8
  DEL PEAK 45(XP22.2) WILD-TYPE     47     41     26     57     38     43
                               vv
clus                            CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 45(XP22.2) MUTATED        8      1     13
  DEL PEAK 45(XP22.2) WILD-TYPE     41     17     41
D74V8, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          36                            47
  CLUS_2                          16                            41
  CLUS_3                          18                            26
  CLUS_4                          27                            57
  CLUS_5                           8                            38
  CLUS_6                           8                            43
  CLUS_7                           8                            41
  CLUS_8                           1                            17
  CLUS_9                          13                            41
[1] 9 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XP22.2) MUTATED       46     66     30
  DEL PEAK 45(XP22.2) WILD-TYPE    143    162     63
D74V9, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          46                           143
  CLUS_2                          66                           162
  CLUS_3                          30                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(XP22.2) MUTATED       17     60     35     30
  DEL PEAK 45(XP22.2) WILD-TYPE     54    138    106     70
D74V10, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          17                            54
  CLUS_2                          60                           138
  CLUS_3                          35                           106
  CLUS_4                          30                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XP22.2) MUTATED       42     55     26
  DEL PEAK 45(XP22.2) WILD-TYPE    103    143     65
D74V11, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          42                           103
  CLUS_2                          55                           143
  CLUS_3                          26                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(XP22.2) MUTATED       21     75     27
  DEL PEAK 45(XP22.2) WILD-TYPE     82    173     56
D74V12, multiclass
        clus
vv       DEL PEAK 45(XP22.2) MUTATED DEL PEAK 45(XP22.2) WILD-TYPE
  CLUS_1                          21                            82
  CLUS_2                          75                           173
  CLUS_3                          27                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
