		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.3	138 (27%)	377	0.55185	1	0.58033	1	9.9999e-06	0.00888	0.25989	1	0.01097	1	0.16	1	0.052449	1	0.00191	1	0.11397	1	0.0094399	1	0.30461	1	0.0065199	1
amp_1p22.3	141 (27%)	374	0.87619	1	1	1	9.9999e-06	0.00888	0.12466	1	0.01658	1	0.50761	1	0.04186	1	0.01572	1	0.12271	1	0.03791	1	0.42443	1	0.17648	1
amp_1q21.3	376 (73%)	139	0.36088	1	0.521	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.10966	1	0.0293	1	0.00464	1	9.9999e-06	0.00888	0.00396	1	0.00072999	0.415	0.00441	1	0.24021	1
amp_3q26.2	170 (33%)	345	0.00029	0.174	0.00145	0.795	9.9999e-06	0.00888	9.9999e-06	0.00888	0.4739	1	0.01737	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.46258	1	2e-05	0.0136
amp_4q12	96 (19%)	419	0.70437	1	0.25608	1	9.9999e-06	0.00888	0.11738	1	0.14106	1	0.01451	1	0.00428	1	0.0073899	1	0.0069499	1	0.00169	0.913	0.82674	1	0.0011	0.613
amp_5p15.33	334 (65%)	181	0.87789	1	0.8051	1	9.9999e-06	0.00888	0.069059	1	0.01541	1	0.0125	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00132	0.73	0.00093999	0.528	0.40641	1	9.9999e-06	0.00888
amp_5p13.1	304 (59%)	211	0.26247	1	1	1	9.9999e-06	0.00888	0.00487	1	0.10054	1	0.04959	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-05	0.0626	0.00026	0.156	0.22499	1	9.9999e-06	0.00888
amp_6p21.1	189 (37%)	326	0.67422	1	0.25448	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.10006	1	0.46736	1	0.00357	1	0.00079999	0.454	0.02577	1	0.00471	1	0.34854	1	0.02747	1
amp_7p11.2	273 (53%)	242	0.95939	1	0.90178	1	9.9999e-06	0.00888	0.00132	0.73	0.0016	0.87	0.0060999	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	6.9999e-05	0.0447	9.9999e-06	0.00888
amp_7q31.2	216 (42%)	299	0.48157	1	0.3111	1	9.9999e-06	0.00888	0.00148	0.808	0.082819	1	0.12	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00055999	0.322	0.00305	1	0.14434	1	9.9999e-06	0.00888
amp_8p11.23	137 (27%)	378	0.29389	1	0.10075	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.6921	1	0.96046	1	9.9999e-06	0.00888	0.00017	0.105	0.01684	1	0.0051399	1	0.50406	1	0.01744	1
amp_8p11.21	174 (34%)	341	0.2529	1	0.44457	1	9.9999e-06	0.00888	0.00032	0.19	0.29965	1	0.92741	1	9.9999e-06	0.00888	2e-05	0.0136	3e-04	0.179	9.9999e-05	0.0626	0.0194	1	0.00019	0.116
amp_8q11.1	234 (45%)	281	0.0049	1	0.03931	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.25518	1	0.9575	1	9.9999e-06	0.00888	9.9999e-06	0.00888	2e-05	0.0136	0.00014	0.0868	0.00111	0.617	9.9999e-06	0.00888
amp_8q24.21	324 (63%)	191	0.03493	1	0.087769	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.50533	1	0.79026	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00102	0.571	0.074299	1	9.9999e-06	0.00888
amp_10p15.1	141 (27%)	374	0.0229	1	0.01586	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.0068199	1	0.055649	1	4e-05	0.0261	9.9999e-06	0.00888	5e-05	0.0324	2e-05	0.0136	0.03788	1	0.00067999	0.388
amp_11q13.3	174 (34%)	341	0.0066199	1	0.00265	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.03027	1	0.91073	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.57145	1	0.00017	0.105
amp_12p12.1	179 (35%)	336	0.19633	1	0.03819	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.03798	1	0.44704	1	9.9999e-06	0.00888	9.9999e-06	0.00888	2e-05	0.0136	3e-05	0.0199	0.67723	1	9.9999e-06	0.00888
amp_12q14.1	170 (33%)	345	0.40795	1	0.28622	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.33835	1	0.55092	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.34793	1	9.9999e-06	0.00888
amp_12q15	171 (33%)	344	0.22204	1	0.1369	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.20908	1	0.097089	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.35225	1	9.9999e-06	0.00888
amp_13q33.3	77 (15%)	438	0.46401	1	0.51997	1	0.090229	1	7.9999e-05	0.0506	0.19387	1	0.92334	1	0.47416	1	0.02112	1	0.15197	1	0.11983	1	0.65207	1	0.04149	1
amp_14q13.3	230 (45%)	285	0.79669	1	0.53936	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.057099	1	0.86616	1	9.9999e-06	0.00888	9.9999e-06	0.00888	2e-05	0.0136	9.9999e-06	0.00888	0.18506	1	0.00013	0.0809
amp_16p11.2	168 (33%)	347	0.80185	1	0.39158	1	9.9999e-06	0.00888	0.0070399	1	0.1554	1	0.22557	1	0.33066	1	0.058749	1	0.03453	1	0.10456	1	0.40609	1	0.1821	1
amp_17q12	227 (44%)	288	0.090149	1	0.0334	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.31008	1	0.01687	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.54274	1	9.9999e-06	0.00888
amp_17q23.1	249 (48%)	266	0.078849	1	0.30265	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.24061	1	0.056599	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	3e-05	0.0199	0.7007	1	3e-05	0.0199
amp_18q11.2	104 (20%)	411	0.19352	1	0.01956	1	0.00099999	0.561	9.9999e-06	0.00888	0.078519	1	0.23157	1	7.9999e-05	0.0506	0.00012	0.0749	0.00014	0.0868	5e-05	0.0324	0.45734	1	6.9999e-05	0.0447
amp_19q12	139 (27%)	376	0.050879	1	0.0104	1	7.9999e-05	0.0506	9.9999e-06	0.00888	0.7659	1	0.35285	1	2e-04	0.122	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00032	0.19	0.061089	1	4e-05	0.0261
amp_20q13.33	250 (49%)	265	0.0055499	1	0.04468	1	9.9999e-06	0.00888	3e-05	0.0199	0.04353	1	0.36316	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.058699	1	3e-05	0.0199
amp_22q11.22	90 (17%)	425	0.2701	1	0.12682	1	9.9999e-06	0.00888	0.36166	1	0.01288	1	0.21073	1	0.5607	1	0.061949	1	0.03976	1	0.04191	1	0.72857	1	0.01657	1
amp_xq28	158 (31%)	357	0.29918	1	0.24264	1	9.9999e-06	0.00888	6.9999e-05	0.0447	0.31963	1	0.55241	1	5e-05	0.0324	4e-05	0.0261	0.0101	1	0.089619	1	0.26017	1	5e-04	0.289
del_1p36.13	120 (23%)	395	0.79631	1	0.38128	1	9.9999e-06	0.00888	0.0025	1	0.69466	1	0.10326	1	8.9999e-05	0.0566	9.9999e-06	0.00888	0.01129	1	0.13399	1	0.01101	1	0.02454	1
del_1p13.1	151 (29%)	364	0.61916	1	0.45436	1	9.9999e-06	0.00888	0.00090999	0.513	0.12644	1	0.054749	1	0.00017	0.105	0.00024	0.144	0.15631	1	0.00222	1	0.84128	1	0.77738	1
del_2q22.1	45 (9%)	470	0.86936	1	0.78082	1	0.00036	0.212	0.01126	1	0.1857	1	0.44887	1	0.02412	1	0.0051699	1	0.01693	1	0.00468	1	0.94775	1	0.03799	1
del_3p26.2	232 (45%)	283	0.094249	1	0.24063	1	2e-05	0.0136	0.00045	0.263	0.055139	1	0.37743	1	0.093259	1	9.9999e-06	0.00888	3e-05	0.0199	0.00013	0.0809	0.8131	1	0.00026	0.156
del_3p21.31	247 (48%)	268	0.13274	1	0.34772	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.0345	1	0.21926	1	0.01693	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.66039	1	2e-05	0.0136
del_3q11.1	139 (27%)	376	0.6122	1	0.6864	1	0.13039	1	0.02198	1	0.7704	1	0.76598	1	0.084369	1	0.0016	0.87	0.21533	1	0.69373	1	0.60348	1	0.859	1
del_3q29	135 (26%)	380	0.71125	1	0.61572	1	0.12492	1	0.00021	0.127	0.13939	1	0.02808	1	7.9999e-05	0.0506	9.9999e-06	0.00888	0.85329	1	0.04256	1	0.14677	1	0.24636	1
del_4p16.3	130 (25%)	385	0.59614	1	0.30881	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.83733	1	0.39769	1	2e-05	0.0136	2e-05	0.0136	9.9999e-06	0.00888	9.9999e-06	0.00888	0.6107	1	0.00035	0.207
del_4q34.3	186 (36%)	329	0.00193	1	0.00309	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.13601	1	0.25468	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.02394	1	9.9999e-06	0.00888
del_5q12.1	179 (35%)	336	0.25982	1	0.16626	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.03009	1	0.40498	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.02284	1	9.9999e-06	0.00888
del_5q31.1	210 (41%)	305	0.092979	1	0.242	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.083559	1	0.42928	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.35889	1	9.9999e-06	0.00888
del_6q11.1	139 (27%)	376	0.95289	1	1	1	0.31155	1	0.088539	1	0.3937	1	0.92388	1	0.66381	1	0.83465	1	0.03077	1	0.20063	1	0.73165	1	0.077359	1
del_6q22.31	255 (50%)	260	0.54206	1	0.14077	1	0.00483	1	9.9999e-06	0.00888	0.12902	1	0.01609	1	0.02736	1	0.00015	0.0927	0.70597	1	0.00147	0.804	0.6658	1	0.28711	1
del_6q26	257 (50%)	258	0.36885	1	0.33363	1	0.00037	0.218	0.00069999	0.398	0.075259	1	0.082329	1	0.10276	1	0.00489	1	0.77114	1	0.01351	1	0.51561	1	0.19086	1
del_8p23.2	252 (49%)	263	0.00497	1	0.0098099	1	9.9999e-06	0.00888	0.00060999	0.35	0.02244	1	0.00038	0.223	9.9999e-06	0.00888	9.9999e-06	0.00888	5e-05	0.0324	0.00448	1	0.01372	1	0.00017	0.105
del_8p11.21	125 (24%)	390	0.79431	1	0.5076	1	9.9999e-06	0.00888	0.17522	1	0.77982	1	0.03512	1	0.0083599	1	0.059009	1	0.1519	1	0.57276	1	0.5411	1	0.13021	1
del_9p23	286 (56%)	229	0.52246	1	0.80582	1	0.00047	0.274	0.2617	1	0.79432	1	0.2426	1	0.00353	1	5.9999e-05	0.0385	0.12009	1	0.02811	1	0.28453	1	0.21478	1
del_9p21.3	292 (57%)	223	0.52216	1	0.80449	1	0.00023	0.139	0.13236	1	0.51097	1	0.02943	1	2e-05	0.0136	2e-05	0.0136	0.13989	1	0.0024	1	0.04424	1	0.10568	1
del_9q21.11	257 (50%)	258	0.03375	1	0.48416	1	3e-05	0.0199	5.9999e-05	0.0385	0.24231	1	0.04168	1	0.00264	1	5.9999e-05	0.0385	5e-05	0.0324	9.9999e-06	0.00888	0.21947	1	0.00019	0.116
del_10p15.3	125 (24%)	390	1	1	0.84523	1	5e-05	0.0324	0.01074	1	0.13792	1	0.12128	1	0.0053099	1	0.00083999	0.475	0.00142	0.78	0.01661	1	0.03255	1	0.0126	1
del_10q26.3	147 (29%)	368	0.61597	1	0.33855	1	9.9999e-06	0.00888	0.01404	1	0.00131	0.726	0.00316	1	3e-05	0.0199	9.9999e-06	0.00888	0.0079099	1	0.00021	0.127	0.02287	1	0.00031	0.185
del_11p15.5	142 (28%)	373	0.26524	1	0.03182	1	9.9999e-06	0.00888	0.00139	0.764	0.62366	1	0.33424	1	0.00043	0.252	9.9999e-06	0.00888	0.00019	0.116	0.00043	0.252	0.069549	1	0.00046	0.268
del_11q23.2	120 (23%)	395	0.43093	1	0.84634	1	9.9999e-06	0.00888	0.00441	1	0.03765	1	0.33584	1	6.9999e-05	0.0447	0.00289	1	0.00199	1	0.04066	1	0.04563	1	0.30951	1
del_11q25	116 (23%)	399	0.10678	1	0.48508	1	3e-05	0.0199	0.01102	1	0.00419	1	0.14768	1	0.00023	0.139	0.01111	1	0.086029	1	0.17486	1	0.11922	1	0.4558	1
del_12p13.2	139 (27%)	376	0.25603	1	0.89867	1	0.00106	0.593	0.0052899	1	0.16611	1	0.063269	1	0.00163	0.883	0.00292	1	0.80168	1	0.9765	1	0.49115	1	0.085179	1
del_12q12	98 (19%)	417	0.59954	1	0.75101	1	0.00033	0.195	0.11692	1	0.13587	1	0.067609	1	0.0063699	1	0.02286	1	0.056179	1	0.21183	1	0.90197	1	0.02634	1
del_12q24.33	130 (25%)	385	0.062409	1	0.071619	1	9.9999e-06	0.00888	0.068579	1	0.062649	1	0.18468	1	4e-05	0.0261	9.9999e-06	0.00888	0.14695	1	0.01798	1	0.55358	1	0.46291	1
del_13q12.11	293 (57%)	222	0.00106	0.593	0.03843	1	9.9999e-06	0.00888	0.01137	1	0.0066699	1	0.00047	0.274	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00319	1	0.00375	1	0.24463	1	0.00047	0.274
del_13q12.13	292 (57%)	223	0.0086499	1	0.063779	1	9.9999e-06	0.00888	0.00482	1	0.0088299	1	0.00082999	0.47	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00442	1	0.0056799	1	0.21279	1	0.00053999	0.311
del_13q14.2	282 (55%)	233	0.0086699	1	0.064889	1	9.9999e-06	0.00888	0.02338	1	0.00478	1	0.00148	0.808	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00168	0.909	0.0069799	1	0.04925	1	8.9999e-05	0.0566
del_13q34	241 (47%)	274	0.03578	1	0.11227	1	9.9999e-06	0.00888	0.16558	1	0.00133	0.733	0.01478	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.0097799	1	0.02712	1	0.22633	1	0.01772	1
del_14q32.33	150 (29%)	365	0.70121	1	0.2864	1	0.00472	1	0.73829	1	0.7708	1	0.3469	1	0.21292	1	0.097119	1	0.02096	1	0.287	1	0.21787	1	0.072249	1
del_15q11.2	263 (51%)	252	0.1676	1	0.29992	1	9.9999e-06	0.00888	0.00051999	0.3	0.03599	1	0.00177	0.954	9.9999e-06	0.00888	9.9999e-06	0.00888	2e-05	0.0136	0.0154	1	0.27085	1	9.9999e-06	0.00888
del_16q23.1	169 (33%)	346	0.060339	1	0.87713	1	2e-05	0.0136	8.9999e-05	0.0566	0.21906	1	0.00091999	0.518	9.9999e-06	0.00888	9.9999e-06	0.00888	0.0278	1	0.00255	1	0.86102	1	0.00059999	0.344
del_17p13.3	278 (54%)	237	0.38542	1	0.78738	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.00049	0.284	0.00062999	0.36	9.9999e-06	0.00888	9.9999e-06	0.00888	0.0087899	1	0.01825	1	0.60327	1	0.00113	0.627
del_18q21.32	254 (49%)	261	0.11281	1	0.079469	1	9.9999e-06	0.00888	0.76822	1	0.01934	1	0.00016	0.0987	3e-05	0.0199	5.9999e-05	0.0385	0.01092	1	0.16511	1	0.86216	1	0.055499	1
del_18q23	249 (48%)	266	0.02916	1	0.02548	1	9.9999e-06	0.00888	0.59552	1	0.0071999	1	6.9999e-05	0.0447	9.9999e-06	0.00888	4e-05	0.0261	0.0074699	1	0.18274	1	0.80419	1	0.056979	1
del_19p13.3	275 (53%)	240	0.57275	1	0.81318	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.51082	1	0.23463	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.1199	1	0.00031	0.185
del_19p13.2	268 (52%)	247	0.69329	1	1	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.89528	1	0.082199	1	2e-05	0.0136	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.055729	1	0.00012	0.0749
del_19q13.33	194 (38%)	321	0.27436	1	0.25572	1	9.9999e-06	0.00888	0.00066999	0.383	0.20411	1	0.21174	1	0.00192	1	2e-05	0.0136	2e-05	0.0136	9.9999e-06	0.00888	0.57651	1	0.01186	1
del_20p13	130 (25%)	385	0.10562	1	0.22341	1	9.9999e-06	0.00888	0.00236	1	0.00344	1	0.00044	0.257	2e-05	0.0136	9.9999e-06	0.00888	0.95384	1	0.70585	1	0.36814	1	0.01566	1
del_20q13.12	82 (16%)	433	0.17086	1	0.57856	1	0.44992	1	0.26385	1	0.10954	1	0.12945	1	0.18518	1	0.04146	1	0.14686	1	0.15771	1	0.04403	1	0.25685	1
del_21q11.2	176 (34%)	339	0.060619	1	0.04748	1	9.9999e-06	0.00888	0.00022	0.133	0.0124	1	0.23264	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	2e-05	0.0136	0.48985	1	9.9999e-06	0.00888
del_22q13.32	250 (49%)	265	0.02547	1	0.080829	1	9.9999e-06	0.00888	9.9999e-06	0.00888	0.73858	1	0.44265	1	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	9.9999e-06	0.00888	0.01597	1	9.9999e-06	0.00888
del_xp22.2	144 (28%)	371	0.68934	1	0.89222	1	9.9999e-06	0.00888	0.00205	1	0.092049	1	0.01138	1	0.00017	0.105	3e-04	0.179	0.34134	1	0.58602	1	0.96154	1	0.10431	1
