		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.2	258 (51%)	243	0.03902	1	0.10056	1	9.9999e-06	0.00996	2e-05	0.0176	0.18011	1	0.073799	1	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00112	0.824	0.00378	1
amp_2p16.1	275 (55%)	226	0.00143	1	0.00028	0.223	9.9999e-06	0.00996	2e-05	0.0176	0.94974	1	0.6719	1	9.9999e-06	0.00996	2e-05	0.0176	0.00029	0.23	0.00066999	0.511	0.03137	1	3e-05	0.026
amp_2q31.2	172 (34%)	329	0.0186	1	0.02294	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.72453	1	0.63871	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00267	1	0.25552	1	0.0033	1	0.00057999	0.445
amp_3q26.33	452 (90%)	49	0.00034	0.267	0.00054999	0.423	9.9999e-06	0.00996	9.9999e-06	0.00996	0.26371	1	0.03247	1	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-05	0.0842	9.9999e-06	0.00996	0.01873	1	6.9999e-05	0.0593
amp_4q12	119 (24%)	382	0.88151	1	0.88204	1	0.00167	1	0.069369	1	0.29517	1	0.13211	1	0.061319	1	0.58189	1	0.03369	1	0.34995	1	0.39428	1	0.03514	1
amp_5p15.33	387 (77%)	114	0.85377	1	0.79875	1	9.9999e-06	0.00996	0.03353	1	0.40464	1	0.3709	1	0.49088	1	0.064689	1	0.53931	1	0.0057799	1	0.47805	1	0.27984	1
amp_5p12	354 (71%)	147	0.95735	1	0.76031	1	9.9999e-06	0.00996	0.01063	1	0.21906	1	0.93457	1	0.36462	1	0.9005	1	0.70934	1	0.077159	1	0.063849	1	0.71038	1
amp_6p12.1	166 (33%)	335	0.65034	1	0.49347	1	2e-05	0.0176	0.052559	1	0.92656	1	0.54408	1	0.00069999	0.532	0.062819	1	0.57173	1	0.11744	1	0.21326	1	0.00017	0.14
amp_6q12	152 (30%)	349	0.93687	1	0.72876	1	2e-05	0.0176	0.00098999	0.736	0.49638	1	0.60154	1	0.0011	0.811	0.0054999	1	0.74248	1	0.02271	1	0.052259	1	0.0066899	1
amp_7p11.2	256 (51%)	245	0.11422	1	0.0298	1	9.9999e-06	0.00996	0.00217	1	0.70267	1	0.59716	1	0.00197	1	2e-05	0.0176	0.15536	1	0.04647	1	0.0453	1	0.32993	1
amp_7q21.2	264 (53%)	237	0.10366	1	0.01539	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.075479	1	0.55537	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00022	0.178	0.00083999	0.634	0.00175	1	0.00088999	0.667
amp_8p11.23	238 (48%)	263	0.01326	1	0.092319	1	0.00014	0.116	0.01897	1	0.19138	1	0.24834	1	0.059689	1	0.056479	1	0.87182	1	0.17299	1	0.59244	1	0.32902	1
amp_8q24.21	352 (70%)	149	0.91957	1	0.78004	1	0.02048	1	0.335	1	0.82356	1	0.57006	1	0.81398	1	0.55072	1	0.2793	1	0.25656	1	0.84568	1	0.89845	1
amp_9p13.3	136 (27%)	365	0.12264	1	0.71628	1	0.00167	1	0.00202	1	0.071329	1	0.00296	1	0.0017	1	0.00149	1	0.0059499	1	0.00319	1	0.01816	1	0.01225	1
amp_11q13.3	185 (37%)	316	0.04882	1	0.03382	1	3e-05	0.026	3e-04	0.237	0.26063	1	0.33665	1	0.03	1	0.064319	1	0.00143	1	0.00468	1	0.1907	1	0.00284	1
amp_12p13.33	255 (51%)	246	0.0080299	1	0.02194	1	9.9999e-06	0.00996	0.00088999	0.667	0.35026	1	0.63687	1	9.9999e-06	0.00996	0.00176	1	0.13408	1	0.00268	1	0.25516	1	0.0059199	1
amp_12q15	178 (36%)	323	0.13366	1	0.34462	1	4e-05	0.0343	0.0154	1	0.76651	1	0.43774	1	0.0060799	1	0.01053	1	0.35779	1	0.64417	1	0.02441	1	0.00359	1
amp_13q34	91 (18%)	410	0.98182	1	0.83318	1	0.38213	1	0.71332	1	0.87088	1	0.21516	1	0.74378	1	0.10492	1	0.01273	1	0.03471	1	0.96891	1	0.46503	1
amp_14q13.3	159 (32%)	342	0.35658	1	0.02686	1	0.15916	1	0.13416	1	0.64885	1	0.078929	1	0.10206	1	0.00239	1	0.01842	1	0.10982	1	0.74896	1	0.84262	1
amp_14q32.33	158 (32%)	343	0.03047	1	0.01527	1	0.00212	1	0.00109	0.806	0.02523	1	0.40238	1	0.00077999	0.59	0.00043	0.335	0.51784	1	0.43343	1	0.054909	1	0.12668	1
amp_15q26.3	179 (36%)	322	0.36175	1	0.050029	1	9.9999e-06	0.00996	0.00051999	0.401	0.46487	1	0.02714	1	8.9999e-05	0.0759	0.003	1	0.03858	1	0.0063799	1	0.0075999	1	0.00424	1
amp_17q25.1	236 (47%)	265	0.0087999	1	0.13609	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.40384	1	0.523	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00046	0.357	0.00467	1	0.00129	0.939	0.00024	0.194
amp_18p11.32	179 (36%)	322	0.04295	1	0.00424	1	9.9999e-06	0.00996	3e-05	0.026	0.5027	1	0.97881	1	0.04153	1	0.00132	0.958	0.01811	1	0.095959	1	0.075399	1	0.00027	0.215
amp_18q11.2	151 (30%)	350	0.00036	0.282	0.01515	1	9.9999e-06	0.00996	3e-05	0.026	0.25446	1	0.74575	1	9.9999e-06	0.00996	5.9999e-05	0.0511	0.0123	1	0.0028	1	0.050499	1	5.9999e-05	0.0511
amp_19q12	224 (45%)	277	0.37059	1	0.64775	1	9.9999e-06	0.00996	0.00175	1	0.23208	1	0.35766	1	0.00296	1	0.02834	1	0.72453	1	0.56234	1	0.0076999	1	0.00221	1
amp_19q13.2	234 (47%)	267	0.3408	1	0.25685	1	9.9999e-06	0.00996	0.00296	1	0.37123	1	0.4896	1	0.00488	1	0.080569	1	0.79631	1	0.50316	1	0.03117	1	0.01339	1
amp_20p12.2	280 (56%)	221	0.00113	0.829	0.0022	1	9.9999e-06	0.00996	0.00021	0.171	0.90309	1	0.32934	1	0.0171	1	0.0148	1	0.089969	1	0.64823	1	0.57293	1	0.53368	1
amp_20q11.21	306 (61%)	195	0.81188	1	0.50507	1	9.9999e-06	0.00996	0.0058099	1	0.78005	1	0.73578	1	0.63353	1	0.94435	1	0.27544	1	0.36821	1	0.59185	1	0.20092	1
amp_22q11.21	256 (51%)	245	0.11383	1	0.16024	1	0.00016	0.132	0.00092999	0.696	0.85944	1	0.6174	1	0.00013	0.108	0.00016	0.132	0.16579	1	0.04205	1	0.5858	1	0.27851	1
amp_xq28	124 (25%)	377	0.88707	1	0.87239	1	0.01082	1	0.04883	1	0.03492	1	0.077379	1	0.0478	1	0.30568	1	0.20299	1	0.16517	1	0.0165	1	0.03304	1
del_1p36.11	228 (46%)	273	3e-05	0.026	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	0.054679	1	0.00352	1	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996
del_1p13.1	221 (44%)	280	0.00015	0.124	3e-05	0.026	9.9999e-06	0.00996	9.9999e-06	0.00996	0.02409	1	0.20673	1	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00026	0.208	9.9999e-06	0.00996
del_2p25.3	50 (10%)	451	0.12155	1	0.45859	1	0.090229	1	0.39481	1	0.25485	1	0.36581	1	0.6749	1	0.60567	1	0.0076899	1	0.36502	1	0.04681	1	0.02947	1
del_2q22.1	131 (26%)	370	0.32097	1	0.33632	1	9.9999e-06	0.00996	0.00021	0.171	0.38378	1	0.42458	1	0.00223	1	0.0070999	1	0.00021	0.171	0.00045	0.35	0.01879	1	0.02519	1
del_2q37.1	159 (32%)	342	0.00297	1	0.00058999	0.452	9.9999e-06	0.00996	9.9999e-06	0.00996	0.38531	1	0.18947	1	9.9999e-06	0.00996	2e-05	0.0176	9.9999e-06	0.00996	3e-05	0.026	9.9999e-06	0.00996	9.9999e-06	0.00996
del_3p25.3	398 (79%)	103	0.38524	1	0.20112	1	0.00173	1	0.00097999	0.729	0.88223	1	0.22815	1	0.00297	1	0.00026	0.208	0.0085199	1	0.00019	0.155	0.01503	1	0.081829	1
del_3p13	434 (87%)	67	0.25479	1	0.35271	1	9.9999e-06	0.00996	0.00025	0.201	0.78459	1	0.00099999	0.741	0.00072999	0.553	0.00083999	0.634	0.00253	1	9.9999e-06	0.00996	0.00085999	0.647	0.00025	0.201
del_3p12.3	427 (85%)	74	0.27729	1	0.22761	1	9.9999e-06	0.00996	3e-04	0.237	0.93638	1	0.00178	1	0.00071999	0.546	0.00475	1	0.02258	1	9.9999e-06	0.00996	0.00054999	0.423	0.00115	0.843
del_3p12.3	421 (84%)	80	0.22854	1	0.39765	1	9.9999e-06	0.00996	0.00027	0.215	0.96977	1	0.0064799	1	0.00244	1	0.0076899	1	0.02647	1	3e-05	0.026	0.00221	1	0.00252	1
del_3q11.1	79 (16%)	422	0.76598	1	0.77967	1	0.22554	1	0.94828	1	0.76318	1	0.60104	1	0.76947	1	0.17241	1	0.92332	1	0.51888	1	0.33843	1	0.73666	1
del_4p15.2	317 (63%)	184	0.00021	0.171	5.9999e-05	0.0511	9.9999e-06	0.00996	9.9999e-06	0.00996	0.77601	1	0.063109	1	0.00016	0.132	9.9999e-06	0.00996	0.00225	1	0.051299	1	0.00011	0.0923	3e-05	0.026
del_4q22.1	285 (57%)	216	0.00307	1	0.00486	1	9.9999e-06	0.00996	0.00144	1	0.11583	1	0.51289	1	0.00013	0.108	0.0145	1	0.01633	1	0.0058399	1	0.056659	1	0.01738	1
del_4q32.3	329 (66%)	172	0.0057999	1	0.01869	1	9.9999e-06	0.00996	5.9999e-05	0.0511	0.067119	1	0.77827	1	2e-05	0.0176	0.00028	0.223	0.00062999	0.481	0.00246	1	0.0042	1	9.9999e-06	0.00996
del_4q35.2	331 (66%)	170	0.068589	1	0.20248	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.36208	1	0.86236	1	9.9999e-06	0.00996	0.0033	1	0.00041	0.32	0.0078899	1	0.04863	1	9.9999e-06	0.00996
del_5q12.1	369 (74%)	132	0.48599	1	0.43145	1	9.9999e-06	0.00996	2e-05	0.0176	0.93703	1	0.46221	1	0.00195	1	0.00128	0.933	0.01089	1	9.9999e-06	0.00996	0.064019	1	0.00321	1
del_5q31.1	386 (77%)	115	0.15833	1	0.27555	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.36916	1	0.52196	1	0.01543	1	0.0071699	1	0.00387	1	9.9999e-06	0.00996	0.080159	1	0.00108	0.799
del_6p25.3	134 (27%)	367	0.45587	1	0.2849	1	0.00038	0.298	0.00011	0.0923	0.20143	1	0.0066899	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.13785	1	0.00085999	0.647	0.11279	1	0.18312	1
del_6q22.31	122 (24%)	379	0.03968	1	0.00342	1	0.00025	0.201	0.00191	1	0.47776	1	0.51058	1	0.00084999	0.64	0.01726	1	0.26316	1	0.20937	1	0.19838	1	0.37063	1
del_6q26	134 (27%)	367	0.04202	1	0.00407	1	0.00016	0.132	9.9999e-05	0.0842	0.92116	1	0.65741	1	0.00050999	0.394	0.0054999	1	0.01737	1	0.073059	1	0.03296	1	0.10447	1
del_7q11.22	48 (10%)	453	0.8009	1	0.70089	1	0.00117	0.855	0.78869	1	0.84829	1	0.3196	1	0.00202	1	0.00098999	0.736	0.64458	1	0.3749	1	0.65627	1	0.90587	1
del_7q36.3	104 (21%)	397	0.17065	1	0.0479	1	0.00435	1	0.29064	1	0.97427	1	0.098979	1	0.00024	0.194	0.00132	0.958	0.30385	1	0.00447	1	0.77264	1	0.04642	1
del_8p23.2	341 (68%)	160	0.59066	1	0.70565	1	2e-05	0.0176	0.01385	1	0.24302	1	0.35969	1	0.11371	1	0.092919	1	0.31825	1	0.063269	1	0.38921	1	0.04209	1
del_9p23	332 (66%)	169	0.01054	1	0.00188	1	9.9999e-06	0.00996	0.01972	1	0.19338	1	0.16885	1	0.00012	0.1	0.00109	0.806	0.01087	1	0.00019	0.155	0.62283	1	0.1283	1
del_9p21.3	388 (77%)	113	0.19732	1	0.25912	1	9.9999e-06	0.00996	0.29242	1	0.81171	1	0.59692	1	0.00058999	0.452	0.01647	1	0.45174	1	0.01166	1	0.37897	1	0.02293	1
del_9p21.1	326 (65%)	175	0.14012	1	0.28418	1	2e-05	0.0176	0.17572	1	0.70891	1	0.63033	1	0.00032	0.252	0.00028	0.223	0.35622	1	0.0091199	1	0.15608	1	0.35854	1
del_9q21.11	251 (50%)	250	0.00024	0.194	5e-05	0.0426	9.9999e-06	0.00996	9.9999e-06	0.00996	0.55616	1	0.14463	1	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	9.9999e-06	0.00996	0.051089	1	0.0090599	1
del_10p15.2	219 (44%)	282	0.2619	1	0.46712	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.14591	1	0.14225	1	9.9999e-06	0.00996	0.00015	0.124	4e-05	0.0343	9.9999e-06	0.00996	0.02415	1	0.01002	1
del_10q23.31	268 (53%)	233	0.00323	1	0.00096999	0.723	9.9999e-06	0.00996	9.9999e-06	0.00996	0.14945	1	0.2478	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00118	0.861	4e-05	0.0343	0.02158	1	0.00019	0.155
del_11p15.5	245 (49%)	256	0.00038	0.298	0.01111	1	9.9999e-06	0.00996	0.00459	1	0.00047	0.364	0.00026	0.208	0.0063899	1	0.081729	1	0.00046	0.357	0.088819	1	0.73268	1	0.00435	1
del_11q22.1	162 (32%)	339	0.55934	1	0.2564	1	0.00134	0.97	0.00062999	0.481	0.15041	1	0.96378	1	0.01396	1	0.03949	1	0.00443	1	0.02846	1	0.21593	1	0.14716	1
del_11q25	184 (37%)	317	0.80084	1	0.70636	1	0.00167	1	0.050499	1	0.17406	1	0.68909	1	0.0167	1	0.14584	1	0.03176	1	0.14886	1	0.3781	1	0.12469	1
del_12q24.31	86 (17%)	415	0.91473	1	0.59932	1	0.40484	1	0.2584	1	0.20135	1	0.67981	1	0.51978	1	0.69796	1	0.70743	1	0.33091	1	0.39808	1	0.17132	1
del_13q12.11	331 (66%)	170	0.10526	1	0.5677	1	0.00356	1	0.1244	1	0.90976	1	0.18071	1	0.81369	1	0.97028	1	0.23141	1	0.38244	1	0.00428	1	0.00395	1
del_13q14.2	344 (69%)	157	0.11944	1	0.10047	1	0.00322	1	0.02075	1	0.70693	1	0.72985	1	0.43107	1	0.57369	1	0.073049	1	0.14653	1	0.0015	1	0.0198	1
del_14q11.2	175 (35%)	326	0.03845	1	0.03393	1	0.53596	1	0.98994	1	0.26037	1	0.16601	1	0.00014	0.116	0.00023	0.186	0.02289	1	0.01021	1	0.00068999	0.525	0.0327	1
del_15q11.2	167 (33%)	334	0.56393	1	0.52141	1	0.15937	1	0.12992	1	0.088949	1	0.02765	1	0.19339	1	0.060779	1	0.02426	1	0.53933	1	0.26306	1	0.1268	1
del_15q21.1	169 (34%)	332	0.45266	1	0.76099	1	0.01606	1	0.20089	1	0.088549	1	0.0069399	1	0.27411	1	0.24748	1	0.00305	1	0.097939	1	0.35853	1	0.17165	1
del_16p13.3	187 (37%)	314	0.25705	1	0.44514	1	0.00411	1	0.04963	1	0.20765	1	0.25869	1	0.51353	1	0.91657	1	0.17379	1	0.63284	1	0.0092999	1	0.10036	1
del_16q23.1	210 (42%)	291	0.93048	1	0.11307	1	0.01422	1	0.21239	1	0.35377	1	0.84835	1	0.069099	1	0.03872	1	0.0066899	1	0.44479	1	0.00032	0.252	0.00029	0.23
del_17p11.2	272 (54%)	229	0.24267	1	0.11275	1	0.00048	0.372	0.56571	1	0.15723	1	0.0084099	1	0.12711	1	0.01596	1	0.30888	1	0.02694	1	0.23096	1	0.15324	1
del_17q11.2	132 (26%)	369	9.9999e-05	0.0842	5.9999e-05	0.0511	9.9999e-06	0.00996	9.9999e-06	0.00996	0.38898	1	0.56396	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.00416	1	0.00116	0.849	0.27424	1	0.00043	0.335
del_17q25.3	102 (20%)	399	0.00429	1	0.01191	1	6.9999e-05	0.0593	0.03059	1	0.62322	1	0.99444	1	0.00152	1	0.00135	0.976	0.64519	1	0.01375	1	0.77474	1	0.10471	1
del_18q23	234 (47%)	267	0.59978	1	0.17159	1	0.0054999	1	0.2074	1	0.88691	1	0.18863	1	0.78986	1	0.47944	1	0.50221	1	0.53676	1	0.10594	1	0.64576	1
del_19p13.3	236 (47%)	265	0.44897	1	0.23322	1	4e-05	0.0343	0.78024	1	0.094459	1	0.16362	1	0.065739	1	0.02277	1	0.1828	1	0.00092999	0.696	0.79423	1	0.053539	1
del_19q13.32	149 (30%)	352	0.82665	1	0.591	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.16371	1	0.53566	1	0.01465	1	0.0074399	1	0.03766	1	0.50328	1	0.01389	1	0.15104	1
del_21q11.2	246 (49%)	255	0.56372	1	0.5624	1	4e-05	0.0343	0.14937	1	0.98248	1	0.72819	1	0.086299	1	0.46929	1	0.00074999	0.568	0.00018	0.147	0.18517	1	0.01516	1
del_21q22.3	281 (56%)	220	0.77594	1	0.12631	1	9.9999e-06	0.00996	0.0429	1	0.5109	1	0.061309	1	0.151	1	0.076019	1	0.0098699	1	3e-04	0.237	0.01427	1	0.04678	1
del_22q11.21	95 (19%)	406	0.02957	1	0.096699	1	0.14204	1	0.066199	1	0.13023	1	0.35491	1	0.1522	1	0.00018	0.147	0.73224	1	0.40245	1	0.25761	1	0.14352	1
del_22q13.32	128 (26%)	373	0.00017	0.14	0.01321	1	0.22419	1	0.01532	1	0.40195	1	0.21379	1	0.00012	0.1	9.9999e-06	0.00996	0.27122	1	0.00049	0.379	0.52208	1	0.1647	1
del_xp22.2	155 (31%)	346	0.71343	1	0.52389	1	2e-05	0.0176	0.00012	0.1	0.35535	1	0.71253	1	0.0118	1	0.0098699	1	0.11941	1	0.10975	1	0.00022	0.178	7.9999e-05	0.0676
del_xp21.1	152 (30%)	349	0.45692	1	0.48024	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.27257	1	0.75284	1	7.9999e-05	0.0676	0.00094999	0.709	0.0060699	1	0.00129	0.939	2e-05	0.0176	9.9999e-06	0.00996
del_xp11.3	149 (30%)	352	0.097209	1	0.40025	1	9.9999e-06	0.00996	9.9999e-06	0.00996	0.10746	1	0.064979	1	0.00016	0.132	0.00229	1	0.00012	0.1	0.00056999	0.438	2e-05	0.0176	9.9999e-06	0.00996
del_xq22.3	114 (23%)	387	0.02106	1	0.01024	1	9.9999e-06	0.00996	2e-05	0.0176	0.8697	1	0.8888	1	0.00112	0.824	0.33265	1	0.0059099	1	0.00016	0.132	0.0081199	1	0.00025	0.201
