
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASMReport/broadinstitute.org/cancer.genome.analysis/10372/20/chasmReport.R")
> result <- main("-o/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/LUSC-TP/10890153/mutationslistBuiltClassifiers.output", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSig_2CV/LUSC-TP/10681159/LUSC-TP.final_analysis_set.maf", "-n/xchip/tcga/Tools/Nozzle/v1.current", "-t/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/LUSC-TP/10694053/mutationrate.txt", "-l/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/LUSC-TP/10694053/mutationslist.txt")
> q(save="no")
