[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTMESO-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/MESO-TP/11588671/MESO-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/MESO-TP/11544692/transformed.cor.cli.txt"

nPatients in clinical file=87, in cluster file=87, common to both=87
[1] 21 87
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            33                             54 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            33                             54 
[1] "DEL PEAK  2(1P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           37                            50 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           37                            50 
[1] "DEL PEAK  3(2Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         17                          70 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         17                          70 
[1] "DEL PEAK  4(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           48                            39 
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           48                            39 
[1] "DEL PEAK  5(4Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         38                          49 
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         38                          49 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           41                            46 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           41                            46 
[1] "DEL PEAK  7(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE 
                           17                            70 
  DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE 
                           17                            70 
[1] "DEL PEAK  8(6Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE 
                           41                            46 
  DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE 
                           41                            46 
[1] "DEL PEAK  9(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         36                          51 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         36                          51 
[1] "DEL PEAK 10(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           18                            69 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           18                            69 
[1] "DEL PEAK 11(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           51                            36 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           51                            36 
[1] "DEL PEAK 12(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            28                             59 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                            28                             59 
[1] "DEL PEAK 13(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE 
                            31                             56 
  DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE 
                            31                             56 
[1] "DEL PEAK 14(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE 
                            18                             69 
  DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE 
                            18                             69 
[1] "DEL PEAK 15(12P13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE 
                             11                              76 
  DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE 
                             11                              76 
[1] "DEL PEAK 16(13Q14.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             43                              44 
  DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE 
                             43                              44 
[1] "DEL PEAK 17(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             39                              48 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             39                              48 
[1] "DEL PEAK 18(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                            28                             59 
  DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE 
                            28                             59 
[1] "DEL PEAK 19(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                             6                             81 
  DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE 
                             6                             81 
[1] "DEL PEAK 20(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE 
                            22                             65 
  DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE 
                            22                             65 
[1] "DEL PEAK 21(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            68                             19 
  DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE 
                            68                             19 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 87 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 87 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        2     19      5      7
  DEL PEAK  1(1P36.31) WILD-TYPE     21      7     19      7
D1V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                           19                              7
  CLUS_3                            5                             19
  CLUS_4                            7                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        4      8     14      7
  DEL PEAK  1(1P36.31) WILD-TYPE     10     12     12     20
D1V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            8                             12
  CLUS_3                           14                             12
  CLUS_4                            7                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        7     11      8      7
  DEL PEAK  1(1P36.31) WILD-TYPE     18     10     10     14
D1V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                           11                             10
  CLUS_3                            8                             10
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        3     20      5      5
  DEL PEAK  1(1P36.31) WILD-TYPE     18     15      8     11
D1V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                           20                             15
  CLUS_3                            5                              8
  CLUS_4                            5                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        7     12     10
  DEL PEAK  1(1P36.31) WILD-TYPE     23     14     10
D1V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           12                             14
  CLUS_3                           10                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        2     10     11      4      2
  DEL PEAK  1(1P36.31) WILD-TYPE      7     13      8      8     11
D1V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                           10                             13
  CLUS_3                           11                              8
  CLUS_4                            4                              8
  CLUS_5                            2                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       14      7      8
  DEL PEAK  1(1P36.31) WILD-TYPE     18     16     11
D1V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             18
  CLUS_2                            7                             16
  CLUS_3                            8                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        2      9      1      8      4      5
  DEL PEAK  1(1P36.31) WILD-TYPE      9      8      6      6      8      8
D1V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            9                              8
  CLUS_3                            1                              6
  CLUS_4                            8                              6
  CLUS_5                            4                              8
  CLUS_6                            5                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = DEL PEAK  2(1P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     14     12      6
  DEL PEAK  2(1P21.3) WILD-TYPE     18     12     12      8
D2V1, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          14                            12
  CLUS_3                          12                            12
  CLUS_4                           6                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     10     16      6
  DEL PEAK  2(1P21.3) WILD-TYPE      9     10     10     21
D2V2, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                          10                            10
  CLUS_3                          16                            10
  CLUS_4                           6                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     11      5     16
  DEL PEAK  2(1P21.3) WILD-TYPE     20     10     13      5
D2V3, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                          11                            10
  CLUS_3                           5                            13
  CLUS_4                          16                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P21.3) MUTATED        5     18      3     11
  DEL PEAK  2(1P21.3) WILD-TYPE     16     17     10      5
D2V4, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                          18                            17
  CLUS_3                           3                            10
  CLUS_4                          11                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.3) MUTATED       12     11      9
  DEL PEAK  2(1P21.3) WILD-TYPE     18     15     11
D2V5, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                          11                            15
  CLUS_3                           9                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.3) MUTATED        2      8     12      4      6
  DEL PEAK  2(1P21.3) WILD-TYPE      7     15      7      8      7
D2V6, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           8                            15
  CLUS_3                          12                             7
  CLUS_4                           4                             8
  CLUS_5                           6                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.3) MUTATED       14     12      6
  DEL PEAK  2(1P21.3) WILD-TYPE     18     11     13
D2V7, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                          14                            18
  CLUS_2                          12                            11
  CLUS_3                           6                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.3) MUTATED        3      8      2      7      3      9
  DEL PEAK  2(1P21.3) WILD-TYPE      8      9      5      7      9      4
D2V8, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           8                             9
  CLUS_3                           2                             5
  CLUS_4                           7                             7
  CLUS_5                           3                             9
  CLUS_6                           9                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = DEL PEAK  3(2Q35) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        1      8      6      2
  DEL PEAK  3(2Q35) WILD-TYPE     22     18     18     12
D3V1, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          22
  CLUS_2                         8                          18
  CLUS_3                         6                          18
  CLUS_4                         2                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        2      8      5      2
  DEL PEAK  3(2Q35) WILD-TYPE     12     12     21     25
D3V2, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         8                          12
  CLUS_3                         5                          21
  CLUS_4                         2                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        2      6      4      4
  DEL PEAK  3(2Q35) WILD-TYPE     23     15     14     17
D3V3, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         2                          23
  CLUS_2                         6                          15
  CLUS_3                         4                          14
  CLUS_4                         4                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q35) MUTATED        0     13      1      2
  DEL PEAK  3(2Q35) WILD-TYPE     21     22     12     14
D3V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                          21
  CLUS_2                        13                          22
  CLUS_3                         1                          12
  CLUS_4                         2                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        5      3      5
  DEL PEAK  3(2Q35) WILD-TYPE     25     23     15
D3V5, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                         3                          23
  CLUS_3                         5                          15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q35) MUTATED        2      4      6      1      0
  DEL PEAK  3(2Q35) WILD-TYPE      7     19     13     11     13
D3V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         4                          19
  CLUS_3                         6                          13
  CLUS_4                         1                          11
  CLUS_5                         0                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        8      4      0
  DEL PEAK  3(2Q35) WILD-TYPE     24     19     19
D3V7, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         8                          24
  CLUS_2                         4                          19
  CLUS_3                         0                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q35) MUTATED        1      4      0      5      1      1
  DEL PEAK  3(2Q35) WILD-TYPE     10     13      7      9     11     12
D3V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         4                          13
  CLUS_3                         0                           7
  CLUS_4                         5                           9
  CLUS_5                         1                          11
  CLUS_6                         1                          12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = DEL PEAK  4(3P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       13     16     18      1
  DEL PEAK  4(3P21.1) WILD-TYPE     10     10      6     13
D4V1, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          13                            10
  CLUS_2                          16                            10
  CLUS_3                          18                             6
  CLUS_4                           1                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       10     13     15     10
  DEL PEAK  4(3P21.1) WILD-TYPE      4      7     11     17
D4V2, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                          13                             7
  CLUS_3                          15                            11
  CLUS_4                          10                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       20      4     10     13
  DEL PEAK  4(3P21.1) WILD-TYPE      5     17      8      8
D4V3, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          20                             5
  CLUS_2                           4                            17
  CLUS_3                          10                             8
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P21.1) MUTATED       15     17      7      8
  DEL PEAK  4(3P21.1) WILD-TYPE      6     18      6      8
D4V4, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          15                             6
  CLUS_2                          17                            18
  CLUS_3                           7                             6
  CLUS_4                           8                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED       20     13      9
  DEL PEAK  4(3P21.1) WILD-TYPE     10     13     11
D4V5, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          20                            10
  CLUS_2                          13                            13
  CLUS_3                           9                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P21.1) MUTATED        8      7      8      7     12
  DEL PEAK  4(3P21.1) WILD-TYPE      1     16     11      5      1
D4V6, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           8                             1
  CLUS_2                           7                            16
  CLUS_3                           8                            11
  CLUS_4                           7                             5
  CLUS_5                          12                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED       17     15      9
  DEL PEAK  4(3P21.1) WILD-TYPE     15      8     10
D4V7, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          17                            15
  CLUS_2                          15                             8
  CLUS_3                           9                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.1) MUTATED        9      5      3      6      6     12
  DEL PEAK  4(3P21.1) WILD-TYPE      2     12      4      8      6      1
D4V8, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           9                             2
  CLUS_2                           5                            12
  CLUS_3                           3                             4
  CLUS_4                           6                             8
  CLUS_5                           6                             6
  CLUS_6                          12                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = DEL PEAK  5(4Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        3     21      6      8
  DEL PEAK  5(4Q26) WILD-TYPE     20      5     18      6
D5V1, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                          20
  CLUS_2                        21                           5
  CLUS_3                         6                          18
  CLUS_4                         8                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        4     14     10     10
  DEL PEAK  5(4Q26) WILD-TYPE     10      6     16     17
D5V2, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                        14                           6
  CLUS_3                        10                          16
  CLUS_4                        10                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        4     11      8     14
  DEL PEAK  5(4Q26) WILD-TYPE     21     10     10      7
D5V3, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         4                          21
  CLUS_2                        11                          10
  CLUS_3                         8                          10
  CLUS_4                        14                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q26) MUTATED        2     20      5     10
  DEL PEAK  5(4Q26) WILD-TYPE     19     15      8      6
D5V4, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         2                          19
  CLUS_2                        20                          15
  CLUS_3                         5                           8
  CLUS_4                        10                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED       12     12     12
  DEL PEAK  5(4Q26) WILD-TYPE     18     14      8
D5V5, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        12                          18
  CLUS_2                        12                          14
  CLUS_3                        12                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q26) MUTATED        3     12      9      8      4
  DEL PEAK  5(4Q26) WILD-TYPE      6     11     10      4      9
D5V6, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                           6
  CLUS_2                        12                          11
  CLUS_3                         9                          10
  CLUS_4                         8                           4
  CLUS_5                         4                           9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED       16     10      8
  DEL PEAK  5(4Q26) WILD-TYPE     16     13     11
D5V7, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        16                          16
  CLUS_2                        10                          13
  CLUS_3                         8                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q26) MUTATED        3     10      1      7      6      7
  DEL PEAK  5(4Q26) WILD-TYPE      8      7      6      7      6      6
D5V8, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                           8
  CLUS_2                        10                           7
  CLUS_3                         1                           6
  CLUS_4                         7                           7
  CLUS_5                         6                           6
  CLUS_6                         7                           6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        3     22      7      9
  DEL PEAK  6(4Q34.3) WILD-TYPE     20      4     17      5
D6V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                          22                             4
  CLUS_3                           7                            17
  CLUS_4                           9                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        4     15     13      9
  DEL PEAK  6(4Q34.3) WILD-TYPE     10      5     13     18
D6V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                          15                             5
  CLUS_3                          13                            13
  CLUS_4                           9                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        7     13      7     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     18      8     11      8
D6V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           7                            18
  CLUS_2                          13                             8
  CLUS_3                           7                            11
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        2     23      5     10
  DEL PEAK  6(4Q34.3) WILD-TYPE     19     12      8      6
D6V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           2                            19
  CLUS_2                          23                            12
  CLUS_3                           5                             8
  CLUS_4                          10                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       12     13     13
  DEL PEAK  6(4Q34.3) WILD-TYPE     18     13      7
D6V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                          13                            13
  CLUS_3                          13                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED        3     13      9      8      5
  DEL PEAK  6(4Q34.3) WILD-TYPE      6     10     10      4      8
D6V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          13                            10
  CLUS_3                           9                            10
  CLUS_4                           8                             4
  CLUS_5                           5                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       18     11      8
  DEL PEAK  6(4Q34.3) WILD-TYPE     14     12     11
D6V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          18                            14
  CLUS_2                          11                            12
  CLUS_3                           8                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4Q34.3) MUTATED        4     11      1      7      6      8
  DEL PEAK  6(4Q34.3) WILD-TYPE      7      6      6      7      6      5
D6V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                          11                             6
  CLUS_3                           1                             6
  CLUS_4                           7                             7
  CLUS_5                           6                             6
  CLUS_6                           8                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  7(5Q23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        0     10      7      0
  DEL PEAK  7(5Q23.2) WILD-TYPE     23     16     17     14
D7V1, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           0                            23
  CLUS_2                          10                            16
  CLUS_3                           7                            17
  CLUS_4                           0                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        2      6      6      3
  DEL PEAK  7(5Q23.2) WILD-TYPE     12     14     20     24
D7V2, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                            14
  CLUS_3                           6                            20
  CLUS_4                           3                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        3      4      4      6
  DEL PEAK  7(5Q23.2) WILD-TYPE     22     17     14     15
D7V3, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           4                            17
  CLUS_3                           4                            14
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5Q23.2) MUTATED        2     11      2      2
  DEL PEAK  7(5Q23.2) WILD-TYPE     19     24     11     14
D7V4, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           2                            19
  CLUS_2                          11                            24
  CLUS_3                           2                            11
  CLUS_4                           2                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q23.2) MUTATED        6      7      3
  DEL PEAK  7(5Q23.2) WILD-TYPE     24     19     17
D7V5, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                           7                            19
  CLUS_3                           3                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5Q23.2) MUTATED        3      5      3      2      3
  DEL PEAK  7(5Q23.2) WILD-TYPE      6     18     16     10     10
D7V6, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           5                            18
  CLUS_3                           3                            16
  CLUS_4                           2                            10
  CLUS_5                           3                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5Q23.2) MUTATED        8      5      2
  DEL PEAK  7(5Q23.2) WILD-TYPE     24     18     17
D7V7, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           8                            24
  CLUS_2                           5                            18
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(5Q23.2) MUTATED        3      4      0      3      1      4
  DEL PEAK  7(5Q23.2) WILD-TYPE      8     13      7     11     11      9
D7V8, multiclass
        clus
vv       DEL PEAK  7(5Q23.2) MUTATED DEL PEAK  7(5Q23.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           4                            13
  CLUS_3                           0                             7
  CLUS_4                           3                            11
  CLUS_5                           1                            11
  CLUS_6                           4                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  8(6Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       12     19      8      2
  DEL PEAK  8(6Q22.1) WILD-TYPE     11      7     16     12
D8V1, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          19                             7
  CLUS_3                           8                            16
  CLUS_4                           2                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED        9      9     14      9
  DEL PEAK  8(6Q22.1) WILD-TYPE      5     11     12     18
D8V2, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           9                            11
  CLUS_3                          14                            12
  CLUS_4                           9                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       16     10      8      6
  DEL PEAK  8(6Q22.1) WILD-TYPE      9     11     10     15
D8V3, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          16                             9
  CLUS_2                          10                            11
  CLUS_3                           8                            10
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.1) MUTATED       14     15      6      5
  DEL PEAK  8(6Q22.1) WILD-TYPE      7     20      7     11
D8V4, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          14                             7
  CLUS_2                          15                            20
  CLUS_3                           6                             7
  CLUS_4                           5                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.1) MUTATED       14     12      8
  DEL PEAK  8(6Q22.1) WILD-TYPE     16     14     12
D8V5, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                          12                            14
  CLUS_3                           8                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q22.1) MUTATED        6      9      8      6      5
  DEL PEAK  8(6Q22.1) WILD-TYPE      3     14     11      6      8
D8V6, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                           9                            14
  CLUS_3                           8                            11
  CLUS_4                           6                             6
  CLUS_5                           5                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.1) MUTATED       18      9      6
  DEL PEAK  8(6Q22.1) WILD-TYPE     14     14     13
D8V7, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                          18                            14
  CLUS_2                           9                            14
  CLUS_3                           6                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6Q22.1) MUTATED        8      9      2      4      5      5
  DEL PEAK  8(6Q22.1) WILD-TYPE      3      8      5     10      7      8
D8V8, multiclass
        clus
vv       DEL PEAK  8(6Q22.1) MUTATED DEL PEAK  8(6Q22.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           9                             8
  CLUS_3                           2                             5
  CLUS_4                           4                            10
  CLUS_5                           5                             7
  CLUS_6                           5                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  9(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       11     19      4      2
  DEL PEAK  9(6Q26) WILD-TYPE     12      7     20     12
D9V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        11                          12
  CLUS_2                        19                           7
  CLUS_3                         4                          20
  CLUS_4                         2                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED        8      7     13      8
  DEL PEAK  9(6Q26) WILD-TYPE      6     13     13     19
D9V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         8                           6
  CLUS_2                         7                          13
  CLUS_3                        13                          13
  CLUS_4                         8                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       12     10      6      7
  DEL PEAK  9(6Q26) WILD-TYPE     13     11     12     14
D9V3, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        12                          13
  CLUS_2                        10                          11
  CLUS_3                         6                          12
  CLUS_4                         7                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q26) MUTATED       10     14      4      7
  DEL PEAK  9(6Q26) WILD-TYPE     11     21      9      9
D9V4, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        10                          11
  CLUS_2                        14                          21
  CLUS_3                         4                           9
  CLUS_4                         7                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q26) MUTATED       13     11      6
  DEL PEAK  9(6Q26) WILD-TYPE     17     15     14
D9V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        13                          17
  CLUS_2                        11                          15
  CLUS_3                         6                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6Q26) MUTATED        4      9      6      6      5
  DEL PEAK  9(6Q26) WILD-TYPE      5     14     13      6      8
D9V6, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         4                           5
  CLUS_2                         9                          14
  CLUS_3                         6                          13
  CLUS_4                         6                           6
  CLUS_5                         5                           8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q26) MUTATED       16      8      6
  DEL PEAK  9(6Q26) WILD-TYPE     16     15     13
D9V7, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        16                          16
  CLUS_2                         8                          15
  CLUS_3                         6                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(6Q26) MUTATED        7      9      2      3      3      6
  DEL PEAK  9(6Q26) WILD-TYPE      4      8      5     11      9      7
D9V8, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         7                           4
  CLUS_2                         9                           8
  CLUS_3                         2                           5
  CLUS_4                         3                          11
  CLUS_5                         3                           9
  CLUS_6                         6                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK 10(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        4      5      5      4
  DEL PEAK 10(8P23.2) WILD-TYPE     19     21     19     10
D10V1, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                           5                            21
  CLUS_3                           5                            19
  CLUS_4                           4                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        4      4      6      4
  DEL PEAK 10(8P23.2) WILD-TYPE     10     16     20     23
D10V2, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           4                            16
  CLUS_3                           6                            20
  CLUS_4                           4                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        6      4      4      4
  DEL PEAK 10(8P23.2) WILD-TYPE     19     17     14     17
D10V3, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           6                            19
  CLUS_2                           4                            17
  CLUS_3                           4                            14
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8P23.2) MUTATED        5      8      2      3
  DEL PEAK 10(8P23.2) WILD-TYPE     16     27     11     13
D10V4, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           8                            27
  CLUS_3                           2                            11
  CLUS_4                           3                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P23.2) MUTATED        5      4      5
  DEL PEAK 10(8P23.2) WILD-TYPE     25     22     15
D10V5, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           4                            22
  CLUS_3                           5                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8P23.2) MUTATED        4      5      4      1      0
  DEL PEAK 10(8P23.2) WILD-TYPE      5     18     15     11     13
D10V6, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           5                            18
  CLUS_3                           4                            15
  CLUS_4                           1                            11
  CLUS_5                           0                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8P23.2) MUTATED        8      4      2
  DEL PEAK 10(8P23.2) WILD-TYPE     24     19     17
D10V7, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           8                            24
  CLUS_2                           4                            19
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(8P23.2) MUTATED        3      4      0      2      2      3
  DEL PEAK 10(8P23.2) WILD-TYPE      8     13      7     12     10     10
D10V8, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           4                            13
  CLUS_3                           0                             7
  CLUS_4                           2                            12
  CLUS_5                           2                            10
  CLUS_6                           3                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK 11(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        2     24     20      5
  DEL PEAK 11(9P21.3) WILD-TYPE     21      2      4      9
D11V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                          24                             2
  CLUS_3                          20                             4
  CLUS_4                           5                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        6     17     17     11
  DEL PEAK 11(9P21.3) WILD-TYPE      8      3      9     16
D11V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                          17                             3
  CLUS_3                          17                             9
  CLUS_4                          11                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        8     14     13     16
  DEL PEAK 11(9P21.3) WILD-TYPE     17      7      5      5
D11V3, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           8                            17
  CLUS_2                          14                             7
  CLUS_3                          13                             5
  CLUS_4                          16                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P21.3) MUTATED        3     28      9     11
  DEL PEAK 11(9P21.3) WILD-TYPE     18      7      4      5
D11V4, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                          28                             7
  CLUS_3                           9                             4
  CLUS_4                          11                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       18     16     12
  DEL PEAK 11(9P21.3) WILD-TYPE     12     10      8
D11V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          16                            10
  CLUS_3                          12                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P21.3) MUTATED        6     14     13      7      6
  DEL PEAK 11(9P21.3) WILD-TYPE      3      9      6      5      7
D11V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                          14                             9
  CLUS_3                          13                             6
  CLUS_4                           7                             5
  CLUS_5                           6                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P21.3) MUTATED       19     17      9
  DEL PEAK 11(9P21.3) WILD-TYPE     13      6     10
D11V7, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          19                            13
  CLUS_2                          17                             6
  CLUS_3                           9                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(9P21.3) MUTATED        4     12      2     11      5     11
  DEL PEAK 11(9P21.3) WILD-TYPE      7      5      5      3      7      2
D11V8, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                          12                             5
  CLUS_3                           2                             5
  CLUS_4                          11                             3
  CLUS_5                           5                             7
  CLUS_6                          11                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK 12(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        2     14     10      2
  DEL PEAK 12(10P15.3) WILD-TYPE     21     12     14     12
D12V1, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                           14                             12
  CLUS_3                           10                             14
  CLUS_4                            2                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        1     12      9      6
  DEL PEAK 12(10P15.3) WILD-TYPE     13      8     17     21
D12V2, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                           12                              8
  CLUS_3                            9                             17
  CLUS_4                            6                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        3      8      6     10
  DEL PEAK 12(10P15.3) WILD-TYPE     22     13     12     11
D12V3, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             22
  CLUS_2                            8                             13
  CLUS_3                            6                             12
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(10P15.3) MUTATED        1     14      5      7
  DEL PEAK 12(10P15.3) WILD-TYPE     20     21      8      9
D12V4, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             20
  CLUS_2                           14                             21
  CLUS_3                            5                              8
  CLUS_4                            7                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10P15.3) MUTATED       10      9      7
  DEL PEAK 12(10P15.3) WILD-TYPE     20     17     13
D12V5, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                            9                             17
  CLUS_3                            7                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(10P15.3) MUTATED        4      9      5      5      3
  DEL PEAK 12(10P15.3) WILD-TYPE      5     14     14      7     10
D12V6, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            9                             14
  CLUS_3                            5                             14
  CLUS_4                            5                              7
  CLUS_5                            3                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(10P15.3) MUTATED       10     10      4
  DEL PEAK 12(10P15.3) WILD-TYPE     22     13     15
D12V7, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                           10                             22
  CLUS_2                           10                             13
  CLUS_3                            4                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(10P15.3) MUTATED        3      6      1      4      5      5
  DEL PEAK 12(10P15.3) WILD-TYPE      8     11      6     10      7      8
D12V8, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            6                             11
  CLUS_3                            1                              6
  CLUS_4                            4                             10
  CLUS_5                            5                              7
  CLUS_6                            5                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK 13(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        3     10     15      3
  DEL PEAK 13(10Q25.2) WILD-TYPE     20     16      9     11
D13V1, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           10                             16
  CLUS_3                           15                              9
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        2     11     13      5
  DEL PEAK 13(10Q25.2) WILD-TYPE     12      9     13     22
D13V2, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                           11                              9
  CLUS_3                           13                             13
  CLUS_4                            5                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        7     10      5      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     18     11     13     12
D13V3, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                           10                             11
  CLUS_3                            5                             13
  CLUS_4                            9                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(10Q25.2) MUTATED        6     13      4      8
  DEL PEAK 13(10Q25.2) WILD-TYPE     15     22      9      8
D13V4, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                           13                             22
  CLUS_3                            4                              9
  CLUS_4                            8                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q25.2) MUTATED       10      9      9
  DEL PEAK 13(10Q25.2) WILD-TYPE     20     17     11
D13V5, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                            9                             17
  CLUS_3                            9                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(10Q25.2) MUTATED        3     11      6      3      5
  DEL PEAK 13(10Q25.2) WILD-TYPE      6     12     13      9      8
D13V6, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                           11                             12
  CLUS_3                            6                             13
  CLUS_4                            3                              9
  CLUS_5                            5                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(10Q25.2) MUTATED       14      9      3
  DEL PEAK 13(10Q25.2) WILD-TYPE     18     14     16
D13V7, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                           14                             18
  CLUS_2                            9                             14
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(10Q25.2) MUTATED        5      9      2      3      3      4
  DEL PEAK 13(10Q25.2) WILD-TYPE      6      8      5     11      9      9
D13V8, multiclass
        clus
vv       DEL PEAK 13(10Q25.2) MUTATED DEL PEAK 13(10Q25.2) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                            9                              8
  CLUS_3                            2                              5
  CLUS_4                            3                             11
  CLUS_5                            3                              9
  CLUS_6                            4                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 14(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        0      3     10      5
  DEL PEAK 14(11Q23.2) WILD-TYPE     23     23     14      9
D14V1, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            0                             23
  CLUS_2                            3                             23
  CLUS_3                           10                             14
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        2      6      5      5
  DEL PEAK 14(11Q23.2) WILD-TYPE     12     14     21     22
D14V2, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             14
  CLUS_3                            5                             21
  CLUS_4                            5                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        1      7      6      4
  DEL PEAK 14(11Q23.2) WILD-TYPE     24     14     12     17
D14V3, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            7                             14
  CLUS_3                            6                             12
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q23.2) MUTATED        1     10      5      2
  DEL PEAK 14(11Q23.2) WILD-TYPE     20     25      8     14
D14V4, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            1                             20
  CLUS_2                           10                             25
  CLUS_3                            5                              8
  CLUS_4                            2                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.2) MUTATED        7      4      5
  DEL PEAK 14(11Q23.2) WILD-TYPE     23     22     15
D14V5, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                            4                             22
  CLUS_3                            5                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q23.2) MUTATED        1      5      6      3      1
  DEL PEAK 14(11Q23.2) WILD-TYPE      8     18     13      9     12
D14V6, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            5                             18
  CLUS_3                            6                             13
  CLUS_4                            3                              9
  CLUS_5                            1                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q23.2) MUTATED        9      4      2
  DEL PEAK 14(11Q23.2) WILD-TYPE     23     19     17
D14V7, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            9                             23
  CLUS_2                            4                             19
  CLUS_3                            2                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(11Q23.2) MUTATED        0      5      0      5      4      1
  DEL PEAK 14(11Q23.2) WILD-TYPE     11     12      7      9      8     12
D14V8, multiclass
        clus
vv       DEL PEAK 14(11Q23.2) MUTATED DEL PEAK 14(11Q23.2) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            5                             12
  CLUS_3                            0                              7
  CLUS_4                            5                              9
  CLUS_5                            4                              8
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 15(12P13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      5      4      2
  DEL PEAK 15(12P13.31) WILD-TYPE     23     21     20     12
D15V1, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              23
  CLUS_2                             5                              21
  CLUS_3                             4                              20
  CLUS_4                             2                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        1      7      2      1
  DEL PEAK 15(12P13.31) WILD-TYPE     13     13     24     26
D15V2, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                              13
  CLUS_3                             2                              24
  CLUS_4                             1                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      5      4      2
  DEL PEAK 15(12P13.31) WILD-TYPE     25     16     14     19
D15V3, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              25
  CLUS_2                             5                              16
  CLUS_3                             4                              14
  CLUS_4                             2                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12P13.31) MUTATED        0      6      3      2
  DEL PEAK 15(12P13.31) WILD-TYPE     21     29     10     14
D15V4, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              21
  CLUS_2                             6                              29
  CLUS_3                             3                              10
  CLUS_4                             2                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12P13.31) MUTATED        4      2      5
  DEL PEAK 15(12P13.31) WILD-TYPE     26     24     15
D15V5, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             4                              26
  CLUS_2                             2                              24
  CLUS_3                             5                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12P13.31) MUTATED        0      5      2      4      0
  DEL PEAK 15(12P13.31) WILD-TYPE      9     18     17      8     13
D15V6, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                               9
  CLUS_2                             5                              18
  CLUS_3                             2                              17
  CLUS_4                             4                               8
  CLUS_5                             0                              13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12P13.31) MUTATED        6      3      1
  DEL PEAK 15(12P13.31) WILD-TYPE     26     20     18
D15V7, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             6                              26
  CLUS_2                             3                              20
  CLUS_3                             1                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(12P13.31) MUTATED        0      5      0      2      2      1
  DEL PEAK 15(12P13.31) WILD-TYPE     11     12      7     12     10     12
D15V8, multiclass
        clus
vv       DEL PEAK 15(12P13.31) MUTATED DEL PEAK 15(12P13.31) WILD-TYPE
  CLUS_1                             0                              11
  CLUS_2                             5                              12
  CLUS_3                             0                               7
  CLUS_4                             2                              12
  CLUS_5                             2                              10
  CLUS_6                             1                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 16(13Q14.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED        8     19     11      5
  DEL PEAK 16(13Q14.11) WILD-TYPE     15      7     13      9
D16V1, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                            19                               7
  CLUS_3                            11                              13
  CLUS_4                             5                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED        7     14     10     12
  DEL PEAK 16(13Q14.11) WILD-TYPE      7      6     16     15
D16V2, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             7                               7
  CLUS_2                            14                               6
  CLUS_3                            10                              16
  CLUS_4                            12                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       13      8     11     10
  DEL PEAK 16(13Q14.11) WILD-TYPE     12     13      7     11
D16V3, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            13                              12
  CLUS_2                             8                              13
  CLUS_3                            11                               7
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q14.11) MUTATED       10     19      8      5
  DEL PEAK 16(13Q14.11) WILD-TYPE     11     16      5     11
D16V4, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            10                              11
  CLUS_2                            19                              16
  CLUS_3                             8                               5
  CLUS_4                             5                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q14.11) MUTATED       14     14     10
  DEL PEAK 16(13Q14.11) WILD-TYPE     16     12     10
D16V5, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            14                              16
  CLUS_2                            14                              12
  CLUS_3                            10                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q14.11) MUTATED        5     12      8      6      7
  DEL PEAK 16(13Q14.11) WILD-TYPE      4     11     11      6      6
D16V6, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             5                               4
  CLUS_2                            12                              11
  CLUS_3                             8                              11
  CLUS_4                             6                               6
  CLUS_5                             7                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q14.11) MUTATED       18      7     11
  DEL PEAK 16(13Q14.11) WILD-TYPE     14     16      8
D16V7, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                            18                              14
  CLUS_2                             7                              16
  CLUS_3                            11                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(13Q14.11) MUTATED        7      9      3      8      4      5
  DEL PEAK 16(13Q14.11) WILD-TYPE      4      8      4      6      8      8
D16V8, multiclass
        clus
vv       DEL PEAK 16(13Q14.11) MUTATED DEL PEAK 16(13Q14.11) WILD-TYPE
  CLUS_1                             7                               4
  CLUS_2                             9                               8
  CLUS_3                             3                               4
  CLUS_4                             8                               6
  CLUS_5                             4                               8
  CLUS_6                             5                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 17(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        4     18      7     10
  DEL PEAK 17(14Q32.31) WILD-TYPE     19      8     17      4
D17V1, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             4                              19
  CLUS_2                            18                               8
  CLUS_3                             7                              17
  CLUS_4                            10                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        5     11     14      9
  DEL PEAK 17(14Q32.31) WILD-TYPE      9      9     12     18
D17V2, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             5                               9
  CLUS_2                            11                               9
  CLUS_3                            14                              12
  CLUS_4                             9                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        6     17      5     10
  DEL PEAK 17(14Q32.31) WILD-TYPE     19      4     13     11
D17V3, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             6                              19
  CLUS_2                            17                               4
  CLUS_3                             5                              13
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(14Q32.31) MUTATED        3     27      1      7
  DEL PEAK 17(14Q32.31) WILD-TYPE     18      8     12      9
D17V4, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             3                              18
  CLUS_2                            27                               8
  CLUS_3                             1                              12
  CLUS_4                             7                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q32.31) MUTATED        7     15     12
  DEL PEAK 17(14Q32.31) WILD-TYPE     23     11      8
D17V5, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             7                              23
  CLUS_2                            15                              11
  CLUS_3                            12                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(14Q32.31) MUTATED        1     14     12      3      4
  DEL PEAK 17(14Q32.31) WILD-TYPE      8      9      7      9      9
D17V6, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                            14                               9
  CLUS_3                            12                               7
  CLUS_4                             3                               9
  CLUS_5                             4                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q32.31) MUTATED       20      6      7
  DEL PEAK 17(14Q32.31) WILD-TYPE     12     17     12
D17V7, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                            20                              12
  CLUS_2                             6                              17
  CLUS_3                             7                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(14Q32.31) MUTATED        4     12      1      9      4      3
  DEL PEAK 17(14Q32.31) WILD-TYPE      7      5      6      5      8     10
D17V8, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             4                               7
  CLUS_2                            12                               5
  CLUS_3                             1                               6
  CLUS_4                             9                               5
  CLUS_5                             4                               8
  CLUS_6                             3                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 18(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        0      9     15      4
  DEL PEAK 18(15Q15.1) WILD-TYPE     23     17      9     10
D18V1, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            0                             23
  CLUS_2                            9                             17
  CLUS_3                           15                              9
  CLUS_4                            4                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        1     12     11      4
  DEL PEAK 18(15Q15.1) WILD-TYPE     13      8     15     23
D18V2, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                           12                              8
  CLUS_3                           11                             15
  CLUS_4                            4                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        3     11      6      8
  DEL PEAK 18(15Q15.1) WILD-TYPE     22     10     12     13
D18V3, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             22
  CLUS_2                           11                             10
  CLUS_3                            6                             12
  CLUS_4                            8                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(15Q15.1) MUTATED        3     14      6      5
  DEL PEAK 18(15Q15.1) WILD-TYPE     18     21      7     11
D18V4, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                           14                             21
  CLUS_3                            6                              7
  CLUS_4                            5                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q15.1) MUTATED        9     11      4
  DEL PEAK 18(15Q15.1) WILD-TYPE     21     15     16
D18V5, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           11                             15
  CLUS_3                            4                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(15Q15.1) MUTATED        1     10      5      4      4
  DEL PEAK 18(15Q15.1) WILD-TYPE      8     13     14      8      9
D18V6, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                           10                             13
  CLUS_3                            5                             14
  CLUS_4                            4                              8
  CLUS_5                            4                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(15Q15.1) MUTATED       11      8      3
  DEL PEAK 18(15Q15.1) WILD-TYPE     21     15     16
D18V7, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                           11                             21
  CLUS_2                            8                             15
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(15Q15.1) MUTATED        2      7      0      6      3      4
  DEL PEAK 18(15Q15.1) WILD-TYPE      9     10      7      8      9      9
D18V8, multiclass
        clus
vv       DEL PEAK 18(15Q15.1) MUTATED DEL PEAK 18(15Q15.1) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                            7                             10
  CLUS_3                            0                              7
  CLUS_4                            6                              8
  CLUS_5                            3                              9
  CLUS_6                            4                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 19(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        1      2      0      3
  DEL PEAK 19(16P13.3) WILD-TYPE     22     24     24     11
D19V1, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            2                             24
  CLUS_3                            0                             24
  CLUS_4                            3                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      0      2      4
  DEL PEAK 19(16P13.3) WILD-TYPE     14     20     24     23
D19V2, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            0                             20
  CLUS_3                            2                             24
  CLUS_4                            4                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      1      2      3
  DEL PEAK 19(16P13.3) WILD-TYPE     25     20     16     18
D19V3, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             25
  CLUS_2                            1                             20
  CLUS_3                            2                             16
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16P13.3) MUTATED        0      1      2      3
  DEL PEAK 19(16P13.3) WILD-TYPE     21     34     11     13
D19V4, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             21
  CLUS_2                            1                             34
  CLUS_3                            2                             11
  CLUS_4                            3                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16P13.3) MUTATED        2      2      1
  DEL PEAK 19(16P13.3) WILD-TYPE     28     24     19
D19V5, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            2                             24
  CLUS_3                            1                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16P13.3) MUTATED        0      2      0      2      1
  DEL PEAK 19(16P13.3) WILD-TYPE      9     21     19     10     12
D19V6, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            2                             21
  CLUS_3                            0                             19
  CLUS_4                            2                             10
  CLUS_5                            1                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16P13.3) MUTATED        2      2      1
  DEL PEAK 19(16P13.3) WILD-TYPE     30     21     18
D19V7, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            2                             30
  CLUS_2                            2                             21
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(16P13.3) MUTATED        0      2      0      0      2      1
  DEL PEAK 19(16P13.3) WILD-TYPE     11     15      7     14     10     12
D19V8, multiclass
        clus
vv       DEL PEAK 19(16P13.3) MUTATED DEL PEAK 19(16P13.3) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             15
  CLUS_3                            0                              7
  CLUS_4                            0                             14
  CLUS_5                            2                             10
  CLUS_6                            1                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 20(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        1      7      9      5
  DEL PEAK 20(16Q24.1) WILD-TYPE     22     19     15      9
D20V1, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            7                             19
  CLUS_3                            9                             15
  CLUS_4                            5                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        3      4      9      6
  DEL PEAK 20(16Q24.1) WILD-TYPE     11     16     17     21
D20V2, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                             16
  CLUS_3                            9                             17
  CLUS_4                            6                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        2      7      5      7
  DEL PEAK 20(16Q24.1) WILD-TYPE     23     14     13     14
D20V3, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            7                             14
  CLUS_3                            5                             13
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(16Q24.1) MUTATED        2     10      3      6
  DEL PEAK 20(16Q24.1) WILD-TYPE     19     25     10     10
D20V4, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            2                             19
  CLUS_2                           10                             25
  CLUS_3                            3                             10
  CLUS_4                            6                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16Q24.1) MUTATED        8      8      3
  DEL PEAK 20(16Q24.1) WILD-TYPE     22     18     17
D20V5, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                            8                             18
  CLUS_3                            3                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(16Q24.1) MUTATED        2      7      4      4      2
  DEL PEAK 20(16Q24.1) WILD-TYPE      7     16     15      8     11
D20V6, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            7                             16
  CLUS_3                            4                             15
  CLUS_4                            4                              8
  CLUS_5                            2                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(16Q24.1) MUTATED        8      7      3
  DEL PEAK 20(16Q24.1) WILD-TYPE     24     16     16
D20V7, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            8                             24
  CLUS_2                            7                             16
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(16Q24.1) MUTATED        1      6      0      3      4      4
  DEL PEAK 20(16Q24.1) WILD-TYPE     10     11      7     11      8      9
D20V8, multiclass
        clus
vv       DEL PEAK 20(16Q24.1) MUTATED DEL PEAK 20(16Q24.1) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            6                             11
  CLUS_3                            0                              7
  CLUS_4                            3                             11
  CLUS_5                            4                              8
  CLUS_6                            4                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 21(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       12     23     23     10
  DEL PEAK 21(22Q12.2) WILD-TYPE     11      3      1      4
D21V1, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           12                             11
  CLUS_2                           23                              3
  CLUS_3                           23                              1
  CLUS_4                           10                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       10     19     25     14
  DEL PEAK 21(22Q12.2) WILD-TYPE      4      1      1     13
D21V2, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           10                              4
  CLUS_2                           19                              1
  CLUS_3                           25                              1
  CLUS_4                           14                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       19     17     11     20
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      4      7      1
D21V3, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           19                              6
  CLUS_2                           17                              4
  CLUS_3                           11                              7
  CLUS_4                           20                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(22Q12.2) MUTATED       14     31      7     15
  DEL PEAK 21(22Q12.2) WILD-TYPE      7      4      6      1
D21V4, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           14                              7
  CLUS_2                           31                              4
  CLUS_3                            7                              6
  CLUS_4                           15                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       24     20     15
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      6      5
D21V5, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           20                              6
  CLUS_3                           15                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(22Q12.2) MUTATED        8     16     15      9     11
  DEL PEAK 21(22Q12.2) WILD-TYPE      1      7      4      3      2
D21V6, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            8                              1
  CLUS_2                           16                              7
  CLUS_3                           15                              4
  CLUS_4                            9                              3
  CLUS_5                           11                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(22Q12.2) MUTATED       26     21     11
  DEL PEAK 21(22Q12.2) WILD-TYPE      6      2      8
D21V7, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                           26                              6
  CLUS_2                           21                              2
  CLUS_3                           11                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(22Q12.2) MUTATED        8     14      4     11      8     13
  DEL PEAK 21(22Q12.2) WILD-TYPE      3      3      3      3      4      0
D21V8, multiclass
        clus
vv       DEL PEAK 21(22Q12.2) MUTATED DEL PEAK 21(22Q12.2) WILD-TYPE
  CLUS_1                            8                              3
  CLUS_2                           14                              3
  CLUS_3                            4                              3
  CLUS_4                           11                              3
  CLUS_5                            8                              4
  CLUS_6                           13                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
