		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.3	292 (50%)	287	0.43073	1	0.081279	1	0.12503	1	0.085069	1	9.9999e-06	0.00986	0.19505	1	0.11201	1	0.38767	1	0.55543	1	0.18437	1	0.088169	1	0.16256	1	0.074303	1	0.92691	1
amp_1q21.3	367 (63%)	212	0.26901	1	0.16325	1	0.64021	1	0.39888	1	9.9999e-06	0.00986	0.00022	0.202	0.076669	1	0.071069	1	0.6573	1	0.37142	1	0.84129	1	0.0062799	1	0.6517	1	0.69547	1
amp_1q42.2	322 (56%)	257	0.02339	1	0.0274	1	0.88447	1	0.0077899	1	9.9999e-06	0.00986	8.9999e-05	0.0834	0.25668	1	0.12406	1	0.50623	1	0.3194	1	0.26474	1	0.00297	1	1	1	0.5102	1
amp_2p23.2	252 (44%)	327	0.32635	1	0.01349	1	0.75937	1	0.17139	1	9.9999e-06	0.00986	0.00441	1	0.14473	1	0.21345	1	0.03174	1	0.0202	1	0.92	1	0.20199	1	1	1	0.671	1
amp_2q31.2	262 (45%)	317	0.11431	1	0.17341	1	0.03407	1	0.02977	1	9.9999e-06	0.00986	0.0075399	1	0.04909	1	0.32079	1	0.15125	1	0.27071	1	0.28648	1	0.086909	1	0.66992	1	0.88847	1
amp_3q26.2	485 (84%)	94	0.0090599	1	0.02555	1	0.81816	1	0.28002	1	9.9999e-06	0.00986	0.03558	1	0.40549	1	0.27981	1	0.0070299	1	0.01139	1	0.12535	1	0.067889	1	1	1	0.57776	1
amp_4p16.3	160 (28%)	419	1	1	0.3201	1	0.02927	1	0.47875	1	0.00042	0.381	0.02766	1	0.27045	1	0.6876	1	0.68721	1	0.98282	1	0.62861	1	0.01872	1	0.6517	1	0.57876	1
amp_4q13.3	113 (20%)	466	0.90521	1	0.4647	1	0.38721	1	0.98604	1	0.00025	0.228	0.52236	1	0.61659	1	0.53923	1	0.18244	1	0.4839	1	0.96554	1	0.69342	1	0.32331	1	0.6958	1
amp_5p15.33	309 (53%)	270	1	1	0.055259	1	0.62648	1	0.2505	1	9.9999e-06	0.00986	0.097239	1	0.98115	1	0.23683	1	0.24273	1	0.39079	1	0.02447	1	0.14808	1	0.23053	1	0.26824	1
amp_6p22.3	306 (53%)	273	0.17623	1	0.03015	1	0.27495	1	0.072849	1	9.9999e-06	0.00986	0.01203	1	0.073609	1	0.056609	1	0.86663	1	0.21294	1	0.37818	1	0.61419	1	1	1	0.25366	1
amp_7q36.3	320 (55%)	259	0.10603	1	0.17832	1	0.36016	1	0.98878	1	3e-05	0.0281	0.45528	1	0.0319	1	0.20097	1	0.84479	1	0.97019	1	0.21128	1	0.50241	1	0.19838	1	0.26257	1
amp_8p11.21	211 (36%)	368	0.1098	1	0.35177	1	0.10191	1	0.53274	1	9.9999e-06	0.00986	0.01615	1	0.01102	1	0.41991	1	0.27911	1	0.17248	1	0.76908	1	0.32611	1	0.23053	1	0.85767	1
amp_8q24.21	461 (80%)	118	9.9999e-06	0.00986	9.9999e-06	0.00986	0.24662	1	0.00262	1	9.9999e-06	0.00986	0.00443	1	0.98656	1	0.32451	1	9.9999e-06	0.00986	0.00029	0.264	0.16072	1	0.097639	1	0.57143	1	0.57117	1
amp_10p15.3	252 (44%)	327	0.82278	1	0.10167	1	0.053609	1	0.16465	1	9.9999e-06	0.00986	0.00043	0.39	0.48848	1	0.50081	1	0.24228	1	0.12148	1	0.3779	1	0.067539	1	1	1	0.60765	1
amp_10q22.3	184 (32%)	395	0.37068	1	0.2655	1	0.60843	1	0.94922	1	0.078799	1	0.84253	1	0.7719	1	0.8197	1	0.34181	1	0.89803	1	0.22822	1	0.64752	1	0.66992	1	0.30271	1
amp_11q14.1	257 (44%)	322	0.0052799	1	0.00385	1	0.77319	1	0.31042	1	9.9999e-06	0.00986	0.00263	1	0.3804	1	0.22799	1	0.00457	1	0.0268	1	0.13122	1	0.92308	1	0.042731	1	0.43513	1
amp_12p13.33	330 (57%)	249	0.02295	1	0.00345	1	0.26256	1	0.054839	1	9.9999e-06	0.00986	0.00014	0.129	0.19633	1	0.15125	1	0.0146	1	0.03108	1	0.53542	1	0.0077099	1	0.37771	1	0.52866	1
amp_12p12.1	313 (54%)	266	0.12704	1	0.30583	1	0.9002	1	0.04116	1	9.9999e-06	0.00986	3e-05	0.0281	0.61501	1	0.090469	1	0.01169	1	0.30127	1	0.44157	1	0.00492	1	0.39128	1	0.04137	1
amp_12q15	222 (38%)	357	0.0028	1	0.24197	1	0.57413	1	0.0023	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.073129	1	0.24919	1	0.00141	1	0.071369	1	0.96758	1	0.10059	1	0.23053	1	0.26923	1
amp_14q11.2	148 (26%)	431	0.01684	1	0.059229	1	0.28986	1	0.0066899	1	0.068689	1	0.19306	1	0.53183	1	0.46965	1	0.34033	1	0.41051	1	0.30044	1	0.82179	1	0.32331	1	0.27748	1
amp_14q32.33	156 (27%)	423	0.43729	1	0.65254	1	0.19807	1	0.01718	1	5e-05	0.0466	0.2891	1	1	1	0.20327	1	0.16647	1	0.24103	1	0.37315	1	0.42298	1	0.096377	1	0.13945	1
amp_15q26.3	163 (28%)	416	0.084049	1	0.42628	1	0.50729	1	0.42577	1	9.9999e-06	0.00986	0.80518	1	0.97813	1	0.18035	1	0.20332	1	0.54815	1	0.15503	1	0.064769	1	0.67492	1	0.78451	1
amp_17q25.3	215 (37%)	364	0.46831	1	0.056069	1	0.9815	1	0.66482	1	0.00382	1	0.77361	1	0.072749	1	0.1283	1	0.01186	1	0.02594	1	0.32575	1	0.12875	1	1	1	0.70948	1
amp_18q11.2	143 (25%)	436	0.82294	1	0.78211	1	0.95317	1	0.2218	1	9.9999e-06	0.00986	0.00386	1	0.1563	1	0.42024	1	0.04223	1	0.076099	1	0.14798	1	0.51137	1	0.3808	1	0.093049	1
amp_19p13.12	315 (54%)	264	0.00019	0.175	0.00025	0.228	0.03713	1	0.25092	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.00035	0.318	9.9999e-05	0.0924	0.24	1	0.46493	1	0.58608	1	0.098509	1	1	1	0.481	1
amp_19q12	322 (56%)	257	0.12458	1	0.0061899	1	0.0295	1	0.51255	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.04714	1	0.21331	1	0.55202	1	0.37465	1	0.34624	1	0.059959	1	1	1	0.78193	1
amp_19q13.2	245 (42%)	334	0.94508	1	0.5371	1	0.6647	1	0.39002	1	9.9999e-06	0.00986	0.00011	0.102	0.44744	1	0.14607	1	0.38181	1	0.086949	1	0.97736	1	0.5523	1	0.67492	1	0.61248	1
amp_20p13	317 (55%)	262	0.18767	1	0.0057099	1	0.20673	1	0.03323	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.32149	1	0.57326	1	0.01655	1	0.34829	1	0.24814	1	0.00081999	0.736	1	1	0.93614	1
amp_20q11.21	348 (60%)	231	0.00271	1	0.00303	1	0.11206	1	0.00296	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.12994	1	0.01928	1	0.00019	0.175	0.04737	1	0.29179	1	0.00053999	0.488	1	1	0.33476	1
amp_20q13.33	402 (69%)	177	0.01069	1	0.00087999	0.789	0.68308	1	0.00125	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.85083	1	0.27902	1	0.0084099	1	0.00475	1	0.47723	1	0.04914	1	0.62406	1	0.01392	1
amp_22q12.2	91 (16%)	488	0.62348	1	0.15707	1	0.069759	1	0.03587	1	0.0076199	1	0.00060999	0.55	0.98331	1	0.091119	1	0.059099	1	0.059529	1	0.10792	1	0.01436	1	1	1	0.086489	1
amp_xp11.23	159 (27%)	420	0.66398	1	0.86734	1	0.41849	1	0.6319	1	9.9999e-06	0.00986	0.00169	1	0.71767	1	0.90198	1	0.44791	1	0.92946	1	0.27698	1	0.0318	1	0.67492	1	0.634	1
amp_xq28	220 (38%)	359	0.24546	1	0.84756	1	0.55503	1	0.12257	1	0.00047	0.425	0.17791	1	0.45566	1	0.44424	1	0.62743	1	0.93856	1	0.87795	1	0.80151	1	0.042731	1	0.6237	1
del_1p36.11	269 (46%)	310	0.73773	1	0.068729	1	0.02938	1	0.11681	1	5.9999e-05	0.0558	0.088929	1	0.12523	1	0.3923	1	0.85221	1	0.42028	1	0.21977	1	0.17074	1	0.67492	1	0.97783	1
del_1q41	97 (17%)	482	0.088409	1	0.62501	1	0.29922	1	0.83698	1	9.9999e-06	0.00986	0.13539	1	0.48716	1	0.01794	1	0.28199	1	0.24611	1	0.92119	1	0.97015	1	0.45455	1	NA	NA
del_2p25.3	120 (21%)	459	0.88101	1	0.26727	1	0.42186	1	0.15915	1	0.40124	1	0.63763	1	0.26076	1	0.54221	1	0.063169	1	0.23903	1	0.87558	1	0.95044	1	0.3808	1	0.42596	1
del_2q22.1	137 (24%)	442	0.10604	1	0.27304	1	0.56809	1	0.00388	1	0.076739	1	0.66459	1	0.6038	1	0.71877	1	0.91947	1	0.30065	1	0.4788	1	0.60275	1	1	1	0.26566	1
del_2q37.3	175 (30%)	404	0.01592	1	0.46431	1	0.63461	1	0.02691	1	2e-05	0.0188	0.088229	1	0.74787	1	0.58757	1	0.014	1	0.00236	1	0.02286	1	0.01919	1	0.32331	1	0.96637	1
del_3p26.2	209 (36%)	370	0.15571	1	0.00056999	0.515	0.0058199	1	0.00437	1	8.9999e-05	0.0834	0.00056999	0.515	0.97031	1	0.23971	1	0.00293	1	0.0098199	1	0.63011	1	0.12315	1	0.41486	1	0.94026	1
del_3q13.31	84 (15%)	495	0.32845	1	0.22706	1	0.56838	1	0.62556	1	0.10989	1	0.082549	1	0.24993	1	0.45342	1	0.40651	1	0.39603	1	0.51937	1	0.52331	1	1	1	NA	NA
del_4q22.1	394 (68%)	185	0.053499	1	0.02374	1	1	1	0.16573	1	0.01547	1	0.22539	1	0.19088	1	0.061489	1	0.070969	1	0.38801	1	0.30291	1	0.25475	1	0.67492	1	0.41302	1
del_4q34.3	421 (73%)	158	0.053339	1	0.00074999	0.674	0.062629	1	0.02811	1	0.18418	1	0.57997	1	0.66904	1	0.19855	1	0.083919	1	0.01929	1	0.4197	1	0.52966	1	1	1	0.5601	1
del_5q12.1	355 (61%)	224	0.88343	1	0.87382	1	0.57732	1	0.055829	1	9.9999e-06	0.00986	2e-04	0.183	0.68483	1	0.86313	1	0.29543	1	0.054139	1	0.16159	1	0.25266	1	1	1	0.26275	1
del_5q13.2	419 (72%)	160	0.74719	1	0.62339	1	0.89974	1	0.25723	1	9.9999e-06	0.00986	0.1044	1	0.79124	1	0.83053	1	0.51733	1	0.092359	1	0.15536	1	0.1071	1	1	1	0.7225	1
del_6q27	380 (66%)	199	0.32289	1	0.061169	1	0.27135	1	0.10339	1	9.9999e-06	0.00986	4e-05	0.0373	0.61969	1	0.55975	1	2e-05	0.0188	0.0016	1	0.56075	1	0.02598	1	0.69136	1	0.43566	1
del_7p22.1	253 (44%)	326	0.39431	1	0.51382	1	0.77052	1	0.061399	1	9.9999e-06	0.00986	0.62608	1	0.81764	1	0.6023	1	0.34693	1	0.12677	1	0.34881	1	0.90511	1	0.23053	1	0.78397	1
del_8p23.3	388 (67%)	191	0.04479	1	0.1517	1	0.57248	1	0.01152	1	9.9999e-06	0.00986	0.051489	1	0.89162	1	0.44945	1	0.89488	1	0.91245	1	0.24713	1	0.24877	1	1	1	NA	NA
del_8p21.2	406 (70%)	173	0.0425	1	0.091869	1	0.18316	1	0.0052199	1	9.9999e-06	0.00986	0.14659	1	0.87537	1	0.9942	1	0.45795	1	0.70064	1	0.58003	1	0.5179	1	1	1	NA	NA
del_9p24.3	261 (45%)	318	0.00026	0.237	9.9999e-06	0.00986	0.6227	1	0.01323	1	0.061479	1	6.9999e-05	0.065	0.32139	1	0.95478	1	0.072569	1	0.051619	1	0.088599	1	0.12553	1	1	1	0.51377	1
del_9q34.13	342 (59%)	237	0.01699	1	0.00088999	0.797	0.6983	1	0.4101	1	9.9999e-06	0.00986	0.01829	1	0.67469	1	0.1627	1	0.077429	1	0.080649	1	0.050329	1	0.10037	1	1	1	0.79291	1
del_10p15.3	120 (21%)	459	0.17867	1	0.70917	1	0.086969	1	0.31926	1	0.097159	1	0.35079	1	0.28998	1	0.04089	1	0.01429	1	0.088889	1	0.25263	1	0.26558	1	0.59398	1	0.10531	1
del_10q24.2	251 (43%)	328	0.00318	1	0.00276	1	0.0072999	1	0.23646	1	8.9999e-05	0.0834	0.00196	1	0.0162	1	0.00243	1	0.532	1	0.36545	1	0.00187	1	0.36798	1	1	1	0.78422	1
del_11p15.5	346 (60%)	233	0.1108	1	0.97077	1	0.61893	1	0.085469	1	9.9999e-06	0.00986	0.0075799	1	0.9456	1	0.71051	1	0.70008	1	0.50585	1	0.10612	1	0.0086399	1	0.20433	1	0.92671	1
del_11q25	201 (35%)	378	0.62347	1	0.65196	1	0.20916	1	0.053169	1	0.27259	1	0.41691	1	0.3218	1	0.26738	1	0.93094	1	0.45365	1	0.70776	1	0.27371	1	1	1	0.76849	1
del_12q24.33	220 (38%)	359	0.00112	1	0.099239	1	0.16321	1	0.01456	1	9.9999e-06	0.00986	0.01978	1	0.29238	1	0.2239	1	0.050309	1	0.03209	1	0.01552	1	0.00464	1	0.64617	1	1	1
del_13q14.2	364 (63%)	215	0.01047	1	0.01549	1	0.61327	1	0.04292	1	0.00024	0.219	9.9999e-06	0.00986	0.00219	1	0.052009	1	0.099139	1	0.67748	1	0.37693	1	0.36667	1	0.67492	1	0.24869	1
del_14q23.3	305 (53%)	274	0.065639	1	0.50637	1	0.65067	1	0.60925	1	5.9999e-05	0.0558	0.73721	1	0.22951	1	0.50755	1	0.85612	1	0.28223	1	0.89972	1	0.59464	1	0.66563	1	0.13966	1
del_15q11.2	299 (52%)	280	0.0054599	1	0.03542	1	0.01062	1	0.0061999	1	9.9999e-06	0.00986	3e-05	0.0281	0.46777	1	0.76631	1	0.0050899	1	0.15859	1	0.02583	1	0.0097299	1	1	1	0.37158	1
del_15q15.1	363 (63%)	216	0.02587	1	0.059619	1	0.0211	1	0.00285	1	9.9999e-06	0.00986	9.9999e-06	0.00986	0.15607	1	0.15246	1	0.01151	1	0.50002	1	0.39548	1	0.00184	1	0.20433	1	0.14351	1
del_16p13.3	313 (54%)	266	0.60185	1	0.071849	1	0.27446	1	0.02947	1	0.10765	1	0.4195	1	0.84009	1	0.82103	1	0.37037	1	0.42617	1	0.22404	1	0.48454	1	0.67492	1	0.78685	1
del_16q22.1	461 (80%)	118	0.4993	1	0.7062	1	0.03189	1	0.44946	1	0.00088999	0.797	0.64	1	0.69445	1	0.14298	1	0.22063	1	0.28531	1	0.31341	1	0.04821	1	1	1	0.38515	1
del_16q23.1	452 (78%)	127	0.10823	1	0.24316	1	0.10261	1	0.060589	1	0.00015	0.138	0.5382	1	0.81182	1	0.22654	1	0.27354	1	0.16881	1	0.056849	1	0.04842	1	1	1	0.90231	1
del_17p12	491 (85%)	88	0.14253	1	0.33641	1	0.59479	1	0.68963	1	0.70865	1	0.32186	1	0.90733	1	0.37057	1	0.15368	1	0.19434	1	0.50356	1	0.21026	1	1	1	NA	NA
del_17q11.2	472 (82%)	107	0.92084	1	0.18995	1	0.73351	1	0.2172	1	0.00071999	0.648	0.00276	1	0.76668	1	0.03588	1	0.37313	1	0.43882	1	0.15126	1	0.16352	1	1	1	0.33862	1
del_18q23	381 (66%)	198	0.88336	1	0.85401	1	0.36907	1	0.95734	1	0.00275	1	0.58735	1	0.48009	1	0.1848	1	0.15176	1	0.36242	1	0.66049	1	0.49201	1	0.64617	1	0.79393	1
del_19p13.3	512 (88%)	67	0.15788	1	0.090999	1	0.83891	1	0.54738	1	0.00034	0.309	0.01814	1	0.62239	1	0.40456	1	0.33452	1	0.5168	1	0.4774	1	0.73238	1	1	1	NA	NA
del_19q13.33	299 (52%)	280	0.00023	0.21	0.00229	1	0.0457	1	0.01994	1	0.01428	1	0.00278	1	0.02895	1	0.30066	1	0.0062799	1	0.12296	1	0.32142	1	0.12951	1	0.39128	1	0.11157	1
del_19q13.43	285 (49%)	294	0.01666	1	0.081749	1	0.079869	1	0.38582	1	0.00011	0.102	5e-05	0.0466	0.16122	1	0.48849	1	0.56367	1	0.98474	1	0.51762	1	0.12071	1	0.042731	1	0.02136	1
del_21q22.3	227 (39%)	352	0.37099	1	0.04166	1	0.69333	1	0.20494	1	0.79513	1	0.26302	1	0.65926	1	0.71438	1	0.24571	1	0.12729	1	0.82008	1	0.72697	1	0.16188	1	0.92781	1
del_22q13.32	503 (87%)	76	0.20902	1	0.12288	1	0.03524	1	0.28465	1	0.01751	1	0.159	1	0.12199	1	0.04468	1	0.16945	1	0.01358	1	0.03657	1	0.57671	1	NA	NA	NA	NA
del_xp21.1	355 (61%)	224	0.40466	1	0.64427	1	0.099819	1	0.80032	1	0.16702	1	0.02033	1	0.46118	1	0.10834	1	0.88473	1	0.23812	1	0.97583	1	0.71589	1	0.59398	1	0.28218	1
