[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oTOV-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/OV-TP/11932662/OV-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/OV-TP/11551026/transformed.cor.cli.txt"

nPatients in clinical file=596, in cluster file=579, common to both=579
[1]  71 579
[1] "AMP PEAK  1(1P34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          292                           287 
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          292                           287 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          367                           212 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          367                           212 
[1] "AMP PEAK  3(1Q42.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE 
                          322                           257 
  AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE 
                          322                           257 
[1] "AMP PEAK  4(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE 
                          252                           327 
  AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE 
                          252                           327 
[1] "AMP PEAK  5(2Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                          262                           317 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                          262                           317 
[1] "AMP PEAK  6(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          485                            94 
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          485                            94 
[1] "AMP PEAK  7(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                          160                           419 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                          160                           419 
[1] "AMP PEAK  8(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                          113                           466 
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                          113                           466 
[1] "AMP PEAK  9(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           309                            270 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           309                            270 
[1] "AMP PEAK 10(6P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          306                           273 
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          306                           273 
[1] "AMP PEAK 11(7Q36.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE 
                          320                           259 
  AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE 
                          320                           259 
[1] "AMP PEAK 12(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           211                            368 
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           211                            368 
[1] "AMP PEAK 13(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           461                            118 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           461                            118 
[1] "AMP PEAK 14(10P15.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE 
                           252                            327 
  AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE 
                           252                            327 
[1] "AMP PEAK 15(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE 
                           184                            395 
  AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE 
                           184                            395 
[1] "AMP PEAK 16(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           257                            322 
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           257                            322 
[1] "AMP PEAK 17(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            330                             249 
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            330                             249 
[1] "AMP PEAK 18(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE 
                           313                            266 
  AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE 
                           313                            266 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         222                          357 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         222                          357 
[1] "AMP PEAK 20(14Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE 
                           148                            431 
  AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE 
                           148                            431 
[1] "AMP PEAK 21(14Q32.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE 
                            156                             423 
  AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE 
                            156                             423 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           163                            416 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           163                            416 
[1] "AMP PEAK 23(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE 
                           215                            364 
  AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE 
                           215                            364 
[1] "AMP PEAK 24(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           143                            436 
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                           143                            436 
[1] "AMP PEAK 25(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            315                             264 
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            315                             264 
[1] "AMP PEAK 26(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         322                          257 
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         322                          257 
[1] "AMP PEAK 27(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE 
                           245                            334 
  AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE 
                           245                            334 
[1] "AMP PEAK 28(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE 
                         317                          262 
  AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE 
                         317                          262 
[1] "AMP PEAK 29(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE 
                            348                             231 
  AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE 
                            348                             231 
[1] "AMP PEAK 30(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE 
                            402                             177 
  AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE 
                            402                             177 
[1] "AMP PEAK 31(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE 
                            91                            488 
  AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE 
                            91                            488 
[1] "AMP PEAK 32(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE 
                           159                            420 
  AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE 
                           159                            420 
[1] "AMP PEAK 33(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE 
                        220                         359 
  AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE 
                        220                         359 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           269                            310 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           269                            310 
[1] "DEL PEAK  2(1Q41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                         97                         482 
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                         97                         482 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                          120                           459 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                          120                           459 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          137                           442 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          137                           442 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          175                           404 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          175                           404 
[1] "DEL PEAK  6(3P26.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          209                           370 
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          209                           370 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            84                            495 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            84                            495 
[1] "DEL PEAK  8(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                          394                           185 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                          394                           185 
[1] "DEL PEAK  9(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          421                           158 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                          421                           158 
[1] "DEL PEAK 10(5Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          355                           224 
  DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE 
                          355                           224 
[1] "DEL PEAK 11(5Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                          419                           160 
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                          419                           160 
[1] "DEL PEAK 12(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        380                         199 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        380                         199 
[1] "DEL PEAK 13(7P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE 
                          253                           326 
  DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE 
                          253                           326 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          388                           191 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                          388                           191 
[1] "DEL PEAK 15(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                          406                           173 
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                          406                           173 
[1] "DEL PEAK 16(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE 
                          261                           318 
  DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE 
                          261                           318 
[1] "DEL PEAK 17(9Q34.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE 
                           342                            237 
  DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE 
                           342                            237 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           120                            459 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           120                            459 
[1] "DEL PEAK 19(10Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE 
                           251                            328 
  DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE 
                           251                            328 
[1] "DEL PEAK 20(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           346                            233 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           346                            233 
[1] "DEL PEAK 21(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE 
                         201                          378 
  DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE 
                         201                          378 
[1] "DEL PEAK 22(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE 
                            220                             359 
  DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE 
                            220                             359 
[1] "DEL PEAK 23(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           364                            215 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                           364                            215 
[1] "DEL PEAK 24(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                           305                            274 
  DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE 
                           305                            274 
[1] "DEL PEAK 25(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE 
                           299                            280 
  DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE 
                           299                            280 
[1] "DEL PEAK 26(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                           363                            216 
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                           363                            216 
[1] "DEL PEAK 27(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                           313                            266 
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                           313                            266 
[1] "DEL PEAK 28(16Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE 
                           461                            118 
  DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE 
                           461                            118 
[1] "DEL PEAK 29(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                           452                            127 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                           452                            127 
[1] "DEL PEAK 30(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                         491                           88 
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                         491                           88 
[1] "DEL PEAK 31(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE 
                           472                            107 
  DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE 
                           472                            107 
[1] "DEL PEAK 32(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         381                          198 
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         381                          198 
[1] "DEL PEAK 33(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           512                             67 
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           512                             67 
[1] "DEL PEAK 34(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE 
                            299                             280 
  DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE 
                            299                             280 
[1] "DEL PEAK 35(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE 
                            285                             294 
  DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE 
                            285                             294 
[1] "DEL PEAK 36(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE 
                           227                            352 
  DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE 
                           227                            352 
[1] "DEL PEAK 37(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE 
                            503                              76 
  DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE 
                            503                              76 
[1] "DEL PEAK 38(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE 
                          355                           224 
  DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE 
                          355                           224 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "MIR_CNMF"                    "MIR_CHIERARCHICAL"          
 [5] "CN_CNMF"                     "METHLYATION_CNMF"           
 [7] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [9] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[11] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[13] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 14 rows and 579 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'MIRSEQ_MATURE_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "MIR_CNMF"                    "MIR_CHIERARCHICAL"          
 [5] "CN_CNMF"                     "METHLYATION_CNMF"           
 [7] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [9] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[11] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[13] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 579 columns, 0 survival variables, and 14 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=10, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED      102    116     64
  AMP PEAK  1(1P34.3) WILD-TYPE    113    100     62
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                         102                           113
  CLUS_2                         116                           100
  CLUS_3                          64                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED      167     79     36
  AMP PEAK  1(1P34.3) WILD-TYPE    143     79     53
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                         167                           143
  CLUS_2                          79                            79
  CLUS_3                          36                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       77     75    129
  AMP PEAK  1(1P34.3) WILD-TYPE     82     89    103
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          77                            82
  CLUS_2                          75                            89
  CLUS_3                         129                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P34.3) MUTATED       38      20     36     50     17     42
  AMP PEAK  1(1P34.3) WILD-TYPE     47      37     22     32     17     33
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  1(1P34.3) MUTATED       17     16     24     21
  AMP PEAK  1(1P34.3) WILD-TYPE     17     20     28     21
D1V4, multiclass
         clus
vv        AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           38                            47
  CLUS_10                          20                            37
  CLUS_2                           36                            22
  CLUS_3                           50                            32
  CLUS_4                           17                            17
  CLUS_5                           42                            33
  CLUS_6                           17                            17
  CLUS_7                           16                            20
  CLUS_8                           24                            28
  CLUS_9                           21                            21
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       58    114    120
  AMP PEAK  1(1P34.3) WILD-TYPE    113     92     82
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          58                           113
  CLUS_2                         114                            92
  CLUS_3                         120                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       94     79    114
  AMP PEAK  1(1P34.3) WILD-TYPE     78     96    107
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          94                            78
  CLUS_2                          79                            96
  CLUS_3                         114                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       51    107     41
  AMP PEAK  1(1P34.3) WILD-TYPE     69     89     41
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          51                            69
  CLUS_2                         107                            89
  CLUS_3                          41                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       60     54     58     27
  AMP PEAK  1(1P34.3) WILD-TYPE     56     42     70     31
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          60                            56
  CLUS_2                          54                            42
  CLUS_3                          58                            70
  CLUS_4                          27                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       56     32     46
  AMP PEAK  1(1P34.3) WILD-TYPE     44     35     45
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          56                            44
  CLUS_2                          32                            35
  CLUS_3                          46                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       60     60     14
  AMP PEAK  1(1P34.3) WILD-TYPE     46     56     22
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          60                            46
  CLUS_2                          60                            56
  CLUS_3                          14                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.3) MUTATED       56    107     73
  AMP PEAK  1(1P34.3) WILD-TYPE     65     75     71
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          56                            65
  CLUS_2                         107                            75
  CLUS_3                          73                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.3) MUTATED       51     39     97     49
  AMP PEAK  1(1P34.3) WILD-TYPE     54     32     68     57
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          51                            54
  CLUS_2                          39                            32
  CLUS_3                          97                            68
  CLUS_4                          49                            57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V13, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P34.3) MUTATED   10  4
  AMP PEAK  1(1P34.3) WILD-TYPE  2  6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.3) MUTATED     10    4
  AMP PEAK  1(1P34.3) WILD-TYPE    2    6
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          10                             2
  CLUS_2                           4                             6
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.3) MUTATED        4      1      1      3      3      2
  AMP PEAK  1(1P34.3) WILD-TYPE      2      1      1      3      1      0
D1V14, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           3                             3
  CLUS_5                           3                             1
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      145    133     75
  AMP PEAK  2(1Q21.3) WILD-TYPE     70     83     51
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         145                            70
  CLUS_2                         133                            83
  CLUS_3                          75                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      194     95     64
  AMP PEAK  2(1Q21.3) WILD-TYPE    116     63     25
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         194                           116
  CLUS_2                          95                            63
  CLUS_3                          64                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       98    101    152
  AMP PEAK  2(1Q21.3) WILD-TYPE     61     63     80
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          98                            61
  CLUS_2                         101                            63
  CLUS_3                         152                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       51      39     38     50     18     49
  AMP PEAK  2(1Q21.3) WILD-TYPE     34      18     20     32     16     26
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  2(1Q21.3) MUTATED       22     24     39     21
  AMP PEAK  2(1Q21.3) WILD-TYPE     12     12     13     21
D2V4, multiclass
         clus
vv        AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           51                            34
  CLUS_10                          39                            18
  CLUS_2                           38                            20
  CLUS_3                           50                            32
  CLUS_4                           18                            16
  CLUS_5                           49                            26
  CLUS_6                           22                            12
  CLUS_7                           24                            12
  CLUS_8                           39                            13
  CLUS_9                           21                            21
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       86    114    167
  AMP PEAK  2(1Q21.3) WILD-TYPE     85     92     35
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          86                            85
  CLUS_2                         114                            92
  CLUS_3                         167                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      128     92    141
  AMP PEAK  2(1Q21.3) WILD-TYPE     44     83     80
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         128                            44
  CLUS_2                          92                            83
  CLUS_3                         141                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       69    134     47
  AMP PEAK  2(1Q21.3) WILD-TYPE     51     62     35
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          69                            51
  CLUS_2                         134                            62
  CLUS_3                          47                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       66     58     92     34
  AMP PEAK  2(1Q21.3) WILD-TYPE     50     38     36     24
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          66                            50
  CLUS_2                          58                            38
  CLUS_3                          92                            36
  CLUS_4                          34                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       65     41     62
  AMP PEAK  2(1Q21.3) WILD-TYPE     35     26     29
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          65                            35
  CLUS_2                          41                            26
  CLUS_3                          62                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       69     72     27
  AMP PEAK  2(1Q21.3) WILD-TYPE     37     44      9
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          69                            37
  CLUS_2                          72                            44
  CLUS_3                          27                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       79    115     89
  AMP PEAK  2(1Q21.3) WILD-TYPE     42     67     55
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          79                            42
  CLUS_2                         115                            67
  CLUS_3                          89                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       54     42    119     68
  AMP PEAK  2(1Q21.3) WILD-TYPE     51     29     46     38
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          54                            51
  CLUS_2                          42                            29
  CLUS_3                         119                            46
  CLUS_4                          68                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V13, binary
                               cls
clus                            0 1
  AMP PEAK  2(1Q21.3) MUTATED   9 6
  AMP PEAK  2(1Q21.3) WILD-TYPE 3 4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED      9    6
  AMP PEAK  2(1Q21.3) WILD-TYPE    3    4
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                           6                             4
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED        5      1      1      3      3      2
  AMP PEAK  2(1Q21.3) WILD-TYPE      1      1      1      3      1      0
D2V14, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           3                             3
  CLUS_5                           3                             1
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q42.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED      133    106     66
  AMP PEAK  3(1Q42.2) WILD-TYPE     82    110     60
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         133                            82
  CLUS_2                         106                           110
  CLUS_3                          66                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED      174     74     57
  AMP PEAK  3(1Q42.2) WILD-TYPE    136     84     32
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         174                           136
  CLUS_2                          74                            84
  CLUS_3                          57                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       85     89    130
  AMP PEAK  3(1Q42.2) WILD-TYPE     74     75    102
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          85                            74
  CLUS_2                          89                            75
  CLUS_3                         130                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q42.2) MUTATED       45      30     36     43     13     44
  AMP PEAK  3(1Q42.2) WILD-TYPE     40      27     22     39     21     31
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  3(1Q42.2) MUTATED       21     22     37     13
  AMP PEAK  3(1Q42.2) WILD-TYPE     13     14     15     29
D3V4, multiclass
         clus
vv        AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           45                            40
  CLUS_10                          30                            27
  CLUS_2                           36                            22
  CLUS_3                           43                            39
  CLUS_4                           13                            21
  CLUS_5                           44                            31
  CLUS_6                           21                            13
  CLUS_7                           22                            14
  CLUS_8                           37                            15
  CLUS_9                           13                            29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       88     87    147
  AMP PEAK  3(1Q42.2) WILD-TYPE     83    119     55
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          88                            83
  CLUS_2                          87                           119
  CLUS_3                         147                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED      119     87    108
  AMP PEAK  3(1Q42.2) WILD-TYPE     53     88    113
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         119                            53
  CLUS_2                          87                            88
  CLUS_3                         108                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       68    111     38
  AMP PEAK  3(1Q42.2) WILD-TYPE     52     85     44
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          68                            52
  CLUS_2                         111                            85
  CLUS_3                          38                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED       62     54     77     24
  AMP PEAK  3(1Q42.2) WILD-TYPE     54     42     51     34
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          62                            54
  CLUS_2                          54                            42
  CLUS_3                          77                            51
  CLUS_4                          24                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       55     37     57
  AMP PEAK  3(1Q42.2) WILD-TYPE     45     30     34
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          55                            45
  CLUS_2                          37                            30
  CLUS_3                          57                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       56     69     24
  AMP PEAK  3(1Q42.2) WILD-TYPE     50     47     12
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          56                            50
  CLUS_2                          69                            47
  CLUS_3                          24                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q42.2) MUTATED       69     91     84
  AMP PEAK  3(1Q42.2) WILD-TYPE     52     91     60
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          69                            52
  CLUS_2                          91                            91
  CLUS_3                          84                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q42.2) MUTATED       41     43    101     59
  AMP PEAK  3(1Q42.2) WILD-TYPE     64     28     64     47
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          41                            64
  CLUS_2                          43                            28
  CLUS_3                         101                            64
  CLUS_4                          59                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V13, binary
                               cls
clus                            0 1
  AMP PEAK  3(1Q42.2) MUTATED   8 6
  AMP PEAK  3(1Q42.2) WILD-TYPE 4 4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.2) MUTATED      8    6
  AMP PEAK  3(1Q42.2) WILD-TYPE    4    4
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           8                             4
  CLUS_2                           6                             4
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q42.2) MUTATED        5      1      0      4      3      1
  AMP PEAK  3(1Q42.2) WILD-TYPE      1      1      2      2      1      1
D3V14, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           4                             2
  CLUS_5                           3                             1
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED      101     86     54
  AMP PEAK  4(2P23.2) WILD-TYPE    114    130     72
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                         101                           114
  CLUS_2                          86                           130
  CLUS_3                          54                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED      123     67     51
  AMP PEAK  4(2P23.2) WILD-TYPE    187     91     38
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                         123                           187
  CLUS_2                          67                            91
  CLUS_3                          51                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       65     73    103
  AMP PEAK  4(2P23.2) WILD-TYPE     94     91    129
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          65                            94
  CLUS_2                          73                            91
  CLUS_3                         103                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(2P23.2) MUTATED       36      20     26     34     16     30
  AMP PEAK  4(2P23.2) WILD-TYPE     49      37     32     48     18     45
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  4(2P23.2) MUTATED       20     13     31     15
  AMP PEAK  4(2P23.2) WILD-TYPE     14     23     21     27
D4V4, multiclass
         clus
vv        AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           36                            49
  CLUS_10                          20                            37
  CLUS_2                           26                            32
  CLUS_3                           34                            48
  CLUS_4                           16                            18
  CLUS_5                           30                            45
  CLUS_6                           20                            14
  CLUS_7                           13                            23
  CLUS_8                           31                            21
  CLUS_9                           15                            27
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       47     87    118
  AMP PEAK  4(2P23.2) WILD-TYPE    124    119     84
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          47                           124
  CLUS_2                          87                           119
  CLUS_3                         118                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       90     61     93
  AMP PEAK  4(2P23.2) WILD-TYPE     82    114    128
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          90                            82
  CLUS_2                          61                           114
  CLUS_3                          93                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       50     92     28
  AMP PEAK  4(2P23.2) WILD-TYPE     70    104     54
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          50                            70
  CLUS_2                          92                           104
  CLUS_3                          28                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       50     48     53     19
  AMP PEAK  4(2P23.2) WILD-TYPE     66     48     75     39
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          50                            66
  CLUS_2                          48                            48
  CLUS_3                          53                            75
  CLUS_4                          19                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       45     22     49
  AMP PEAK  4(2P23.2) WILD-TYPE     55     45     42
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          45                            55
  CLUS_2                          22                            45
  CLUS_3                          49                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       44     48     24
  AMP PEAK  4(2P23.2) WILD-TYPE     62     68     12
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          44                            62
  CLUS_2                          48                            68
  CLUS_3                          24                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P23.2) MUTATED       54     77     62
  AMP PEAK  4(2P23.2) WILD-TYPE     67    105     82
D4V11, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          54                            67
  CLUS_2                          77                           105
  CLUS_3                          62                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P23.2) MUTATED       37     30     80     46
  AMP PEAK  4(2P23.2) WILD-TYPE     68     41     85     60
D4V12, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          30                            41
  CLUS_3                          80                            85
  CLUS_4                          46                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V13, binary
                               cls
clus                            0 1
  AMP PEAK  4(2P23.2) MUTATED   6 5
  AMP PEAK  4(2P23.2) WILD-TYPE 6 5
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P23.2) MUTATED      6    5
  AMP PEAK  4(2P23.2) WILD-TYPE    6    5
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           6                             6
  CLUS_2                           5                             5
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P23.2) MUTATED        4      1      0      2      3      1
  AMP PEAK  4(2P23.2) WILD-TYPE      2      1      2      4      1      1
D4V14, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           2                             4
  CLUS_5                           3                             1
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(2Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED      108     95     49
  AMP PEAK  5(2Q31.2) WILD-TYPE    107    121     77
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                         108                           107
  CLUS_2                          95                           121
  CLUS_3                          49                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED      141     64     47
  AMP PEAK  5(2Q31.2) WILD-TYPE    169     94     42
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                         141                           169
  CLUS_2                          64                            94
  CLUS_3                          47                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       73     61    117
  AMP PEAK  5(2Q31.2) WILD-TYPE     86    103    115
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          73                            86
  CLUS_2                          61                           103
  CLUS_3                         117                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(2Q31.2) MUTATED       30      20     32     42     14     36
  AMP PEAK  5(2Q31.2) WILD-TYPE     55      37     26     40     20     39
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  5(2Q31.2) MUTATED       18     15     31     13
  AMP PEAK  5(2Q31.2) WILD-TYPE     16     21     21     29
D5V4, multiclass
         clus
vv        AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           30                            55
  CLUS_10                          20                            37
  CLUS_2                           32                            26
  CLUS_3                           42                            40
  CLUS_4                           14                            20
  CLUS_5                           36                            39
  CLUS_6                           18                            16
  CLUS_7                           15                            21
  CLUS_8                           31                            21
  CLUS_9                           13                            29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       46    102    114
  AMP PEAK  5(2Q31.2) WILD-TYPE    125    104     88
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          46                           125
  CLUS_2                         102                           104
  CLUS_3                         114                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       95     70     93
  AMP PEAK  5(2Q31.2) WILD-TYPE     77    105    128
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          95                            77
  CLUS_2                          70                           105
  CLUS_3                          93                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       52    100     29
  AMP PEAK  5(2Q31.2) WILD-TYPE     68     96     53
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          52                            68
  CLUS_2                         100                            96
  CLUS_3                          29                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       49     50     53     29
  AMP PEAK  5(2Q31.2) WILD-TYPE     67     46     75     29
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          49                            67
  CLUS_2                          50                            46
  CLUS_3                          53                            75
  CLUS_4                          29                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       42     27     49
  AMP PEAK  5(2Q31.2) WILD-TYPE     58     40     42
D5V9, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          42                            58
  CLUS_2                          27                            40
  CLUS_3                          49                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       47     50     21
  AMP PEAK  5(2Q31.2) WILD-TYPE     59     66     15
D5V10, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          47                            59
  CLUS_2                          50                            66
  CLUS_3                          21                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(2Q31.2) MUTATED       60     88     59
  AMP PEAK  5(2Q31.2) WILD-TYPE     61     94     85
D5V11, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          60                            61
  CLUS_2                          88                            94
  CLUS_3                          59                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(2Q31.2) MUTATED       44     34     88     41
  AMP PEAK  5(2Q31.2) WILD-TYPE     61     37     77     65
D5V12, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          44                            61
  CLUS_2                          34                            37
  CLUS_3                          88                            77
  CLUS_4                          41                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V13, binary
                               cls
clus                            0 1
  AMP PEAK  5(2Q31.2) MUTATED   7 4
  AMP PEAK  5(2Q31.2) WILD-TYPE 5 6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q31.2) MUTATED      7    4
  AMP PEAK  5(2Q31.2) WILD-TYPE    5    6
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           4                             6
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(2Q31.2) MUTATED        3      1      1      2      2      2
  AMP PEAK  5(2Q31.2) WILD-TYPE      3      1      1      4      2      0
D5V14, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           2                             4
  CLUS_5                           2                             2
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      167    191    108
  AMP PEAK  6(3Q26.2) WILD-TYPE     48     25     18
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         167                            48
  CLUS_2                         191                            25
  CLUS_3                         108                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      257    141     68
  AMP PEAK  6(3Q26.2) WILD-TYPE     53     17     21
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         257                            53
  CLUS_2                         141                            17
  CLUS_3                          68                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      135    135    195
  AMP PEAK  6(3Q26.2) WILD-TYPE     24     29     37
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         135                            24
  CLUS_2                         135                            29
  CLUS_3                         195                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(3Q26.2) MUTATED       72      41     44     71     30     63
  AMP PEAK  6(3Q26.2) WILD-TYPE     13      16     14     11      4     12
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  6(3Q26.2) MUTATED       30     33     45     36
  AMP PEAK  6(3Q26.2) WILD-TYPE      4      3      7      6
D6V4, multiclass
         clus
vv        AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           72                            13
  CLUS_10                          41                            16
  CLUS_2                           44                            14
  CLUS_3                           71                            11
  CLUS_4                           30                             4
  CLUS_5                           63                            12
  CLUS_6                           30                             4
  CLUS_7                           33                             3
  CLUS_8                           45                             7
  CLUS_9                           36                             6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      113    181    191
  AMP PEAK  6(3Q26.2) WILD-TYPE     58     25     11
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         113                            58
  CLUS_2                         181                            25
  CLUS_3                         191                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      151    136    188
  AMP PEAK  6(3Q26.2) WILD-TYPE     21     39     33
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         151                            21
  CLUS_2                         136                            39
  CLUS_3                         188                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       95    161     71
  AMP PEAK  6(3Q26.2) WILD-TYPE     25     35     11
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          95                            25
  CLUS_2                         161                            35
  CLUS_3                          71                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED      100     73    105     49
  AMP PEAK  6(3Q26.2) WILD-TYPE     16     23     23      9
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         100                            16
  CLUS_2                          73                            23
  CLUS_3                         105                            23
  CLUS_4                          49                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       92     58     69
  AMP PEAK  6(3Q26.2) WILD-TYPE      8      9     22
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          92                             8
  CLUS_2                          58                             9
  CLUS_3                          69                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED       98     91     30
  AMP PEAK  6(3Q26.2) WILD-TYPE      8     25      6
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          98                             8
  CLUS_2                          91                            25
  CLUS_3                          30                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q26.2) MUTATED      100    160    115
  AMP PEAK  6(3Q26.2) WILD-TYPE     21     22     29
D6V11, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         100                            21
  CLUS_2                         160                            22
  CLUS_3                         115                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q26.2) MUTATED       84     57    148     86
  AMP PEAK  6(3Q26.2) WILD-TYPE     21     14     17     20
D6V12, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          84                            21
  CLUS_2                          57                            14
  CLUS_3                         148                            17
  CLUS_4                          86                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V13, binary
                               cls
clus                             0  1
  AMP PEAK  6(3Q26.2) MUTATED   10  8
  AMP PEAK  6(3Q26.2) WILD-TYPE  2  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(3Q26.2) MUTATED     10    8
  AMP PEAK  6(3Q26.2) WILD-TYPE    2    2
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          10                             2
  CLUS_2                           8                             2
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q26.2) MUTATED        5      1      2      5      4      1
  AMP PEAK  6(3Q26.2) WILD-TYPE      1      1      0      1      0      1
D6V14, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           1                             1
  CLUS_3                           2                             0
  CLUS_4                           5                             1
  CLUS_5                           4                             0
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       59     59     35
  AMP PEAK  7(4P16.3) WILD-TYPE    156    157     91
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          59                           156
  CLUS_2                          59                           157
  CLUS_3                          35                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       78     50     25
  AMP PEAK  7(4P16.3) WILD-TYPE    232    108     64
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          78                           232
  CLUS_2                          50                           108
  CLUS_3                          25                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       41     35     77
  AMP PEAK  7(4P16.3) WILD-TYPE    118    129    155
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          41                           118
  CLUS_2                          35                           129
  CLUS_3                          77                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(4P16.3) MUTATED       24      15     12     26      6     28
  AMP PEAK  7(4P16.3) WILD-TYPE     61      42     46     56     28     47
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  7(4P16.3) MUTATED        7      9     16     10
  AMP PEAK  7(4P16.3) WILD-TYPE     27     27     36     32
D7V4, multiclass
         clus
vv        AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           24                            61
  CLUS_10                          15                            42
  CLUS_2                           12                            46
  CLUS_3                           26                            56
  CLUS_4                            6                            28
  CLUS_5                           28                            47
  CLUS_6                            7                            27
  CLUS_7                            9                            27
  CLUS_8                           16                            36
  CLUS_9                           10                            32
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       32     76     52
  AMP PEAK  7(4P16.3) WILD-TYPE    139    130    150
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          32                           139
  CLUS_2                          76                           130
  CLUS_3                          52                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       55     54     47
  AMP PEAK  7(4P16.3) WILD-TYPE    117    121    174
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          55                           117
  CLUS_2                          54                           121
  CLUS_3                          47                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       29     62     27
  AMP PEAK  7(4P16.3) WILD-TYPE     91    134     55
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          29                            91
  CLUS_2                          62                           134
  CLUS_3                          27                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       35     32     37     14
  AMP PEAK  7(4P16.3) WILD-TYPE     81     64     91     44
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          35                            81
  CLUS_2                          32                            64
  CLUS_3                          37                            91
  CLUS_4                          14                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       30     20     32
  AMP PEAK  7(4P16.3) WILD-TYPE     70     47     59
D7V9, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          30                            70
  CLUS_2                          20                            47
  CLUS_3                          32                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       33     37     12
  AMP PEAK  7(4P16.3) WILD-TYPE     73     79     24
D7V10, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          33                            73
  CLUS_2                          37                            79
  CLUS_3                          12                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4P16.3) MUTATED       35     54     36
  AMP PEAK  7(4P16.3) WILD-TYPE     86    128    108
D7V11, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          35                            86
  CLUS_2                          54                           128
  CLUS_3                          36                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4P16.3) MUTATED       22     24     57     22
  AMP PEAK  7(4P16.3) WILD-TYPE     83     47    108     84
D7V12, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          22                            83
  CLUS_2                          24                            47
  CLUS_3                          57                           108
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V13, binary
                               cls
clus                            0 1
  AMP PEAK  7(4P16.3) MUTATED   3 4
  AMP PEAK  7(4P16.3) WILD-TYPE 9 6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4P16.3) MUTATED      3    4
  AMP PEAK  7(4P16.3) WILD-TYPE    9    6
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           4                             6
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4P16.3) MUTATED        1      0      0      3      2      1
  AMP PEAK  7(4P16.3) WILD-TYPE      5      2      2      3      2      1
D7V14, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                             2
  CLUS_3                           0                             2
  CLUS_4                           3                             3
  CLUS_5                           2                             2
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       40     44     24
  AMP PEAK  8(4Q13.3) WILD-TYPE    175    172    102
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          40                           175
  CLUS_2                          44                           172
  CLUS_3                          24                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       64     31     13
  AMP PEAK  8(4Q13.3) WILD-TYPE    246    127     76
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          64                           246
  CLUS_2                          31                           127
  CLUS_3                          13                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       33     26     49
  AMP PEAK  8(4Q13.3) WILD-TYPE    126    138    183
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          33                           126
  CLUS_2                          26                           138
  CLUS_3                          49                           183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(4Q13.3) MUTATED       16      10     11     17      6     19
  AMP PEAK  8(4Q13.3) WILD-TYPE     69      47     47     65     28     56
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  8(4Q13.3) MUTATED        7      6      9      7
  AMP PEAK  8(4Q13.3) WILD-TYPE     27     30     43     35
D8V4, multiclass
         clus
vv        AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           16                            69
  CLUS_10                          10                            47
  CLUS_2                           11                            47
  CLUS_3                           17                            65
  CLUS_4                            6                            28
  CLUS_5                           19                            56
  CLUS_6                            7                            27
  CLUS_7                            6                            30
  CLUS_8                            9                            43
  CLUS_9                            7                            35
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       17     54     42
  AMP PEAK  8(4Q13.3) WILD-TYPE    154    152    160
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          17                           154
  CLUS_2                          54                           152
  CLUS_3                          42                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       38     32     39
  AMP PEAK  8(4Q13.3) WILD-TYPE    134    143    182
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          38                           134
  CLUS_2                          32                           143
  CLUS_3                          39                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       21     43     15
  AMP PEAK  8(4Q13.3) WILD-TYPE     99    153     67
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          21                            99
  CLUS_2                          43                           153
  CLUS_3                          15                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       20     24     24     11
  AMP PEAK  8(4Q13.3) WILD-TYPE     96     72    104     47
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          20                            96
  CLUS_2                          24                            72
  CLUS_3                          24                           104
  CLUS_4                          11                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       23     18     14
  AMP PEAK  8(4Q13.3) WILD-TYPE     77     49     77
D8V9, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          23                            77
  CLUS_2                          18                            49
  CLUS_3                          14                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       25     25      5
  AMP PEAK  8(4Q13.3) WILD-TYPE     81     91     31
D8V10, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          25                            81
  CLUS_2                          25                            91
  CLUS_3                           5                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(4Q13.3) MUTATED       25     37     28
  AMP PEAK  8(4Q13.3) WILD-TYPE     96    145    116
D8V11, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          25                            96
  CLUS_2                          37                           145
  CLUS_3                          28                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(4Q13.3) MUTATED       18     17     35     20
  AMP PEAK  8(4Q13.3) WILD-TYPE     87     54    130     86
D8V12, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          18                            87
  CLUS_2                          17                            54
  CLUS_3                          35                           130
  CLUS_4                          20                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V13, binary
                               cls
clus                            0 1
  AMP PEAK  8(4Q13.3) MUTATED   4 1
  AMP PEAK  8(4Q13.3) WILD-TYPE 8 9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(4Q13.3) MUTATED      4    1
  AMP PEAK  8(4Q13.3) WILD-TYPE    8    9
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           1                             9
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(4Q13.3) MUTATED        3      0      0      1      1      0
  AMP PEAK  8(4Q13.3) WILD-TYPE      3      2      2      5      3      2
D8V14, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           0                             2
  CLUS_3                           0                             2
  CLUS_4                           1                             5
  CLUS_5                           1                             3
  CLUS_6                           0                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED      115    116     67
  AMP PEAK  9(5P15.33) WILD-TYPE    100    100     59
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                          115                            100
  CLUS_2                          116                            100
  CLUS_3                           67                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED      177     83     38
  AMP PEAK  9(5P15.33) WILD-TYPE    133     75     51
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                          177                            133
  CLUS_2                           83                             75
  CLUS_3                           38                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       90     84    125
  AMP PEAK  9(5P15.33) WILD-TYPE     69     80    107
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           90                             69
  CLUS_2                           84                             80
  CLUS_3                          125                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(5P15.33) MUTATED       43      27     31     46     20     50
  AMP PEAK  9(5P15.33) WILD-TYPE     42      30     27     36     14     25
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK  9(5P15.33) MUTATED       18     13     28     23
  AMP PEAK  9(5P15.33) WILD-TYPE     16     23     24     19
D9V4, multiclass
         clus
vv        AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            43                             42
  CLUS_10                           27                             30
  CLUS_2                            31                             27
  CLUS_3                            46                             36
  CLUS_4                            20                             14
  CLUS_5                            50                             25
  CLUS_6                            18                             16
  CLUS_7                            13                             23
  CLUS_8                            28                             24
  CLUS_9                            23                             19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       60    123    126
  AMP PEAK  9(5P15.33) WILD-TYPE    111     83     76
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           60                            111
  CLUS_2                          123                             83
  CLUS_3                          126                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       99     82    123
  AMP PEAK  9(5P15.33) WILD-TYPE     73     93     98
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           99                             73
  CLUS_2                           82                             93
  CLUS_3                          123                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       64    103     44
  AMP PEAK  9(5P15.33) WILD-TYPE     56     93     38
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           64                             56
  CLUS_2                          103                             93
  CLUS_3                           44                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       68     43     70     30
  AMP PEAK  9(5P15.33) WILD-TYPE     48     53     58     28
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           68                             48
  CLUS_2                           43                             53
  CLUS_3                           70                             58
  CLUS_4                           30                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       57     41     44
  AMP PEAK  9(5P15.33) WILD-TYPE     43     26     47
D9V9, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           57                             43
  CLUS_2                           41                             26
  CLUS_3                           44                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       61     65     16
  AMP PEAK  9(5P15.33) WILD-TYPE     45     51     20
D9V10, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           61                             45
  CLUS_2                           65                             51
  CLUS_3                           16                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(5P15.33) MUTATED       61    115     72
  AMP PEAK  9(5P15.33) WILD-TYPE     60     67     72
D9V11, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           61                             60
  CLUS_2                          115                             67
  CLUS_3                           72                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(5P15.33) MUTATED       54     38    103     53
  AMP PEAK  9(5P15.33) WILD-TYPE     51     33     62     53
D9V12, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           54                             51
  CLUS_2                           38                             33
  CLUS_3                          103                             62
  CLUS_4                           53                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V13, binary
                                cls
clus                             0 1
  AMP PEAK  9(5P15.33) MUTATED   5 7
  AMP PEAK  9(5P15.33) WILD-TYPE 7 3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(5P15.33) MUTATED      5    7
  AMP PEAK  9(5P15.33) WILD-TYPE    7    3
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            7                              3
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(5P15.33) MUTATED        2      2      0      3      3      2
  AMP PEAK  9(5P15.33) WILD-TYPE      4      0      2      3      1      0
D9V14, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                              0
  CLUS_3                            0                              2
  CLUS_4                            3                              3
  CLUS_5                            3                              1
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(6P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED      118    118     57
  AMP PEAK 10(6P22.3) WILD-TYPE     97     98     69
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         118                            97
  CLUS_2                         118                            98
  CLUS_3                          57                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED      167     71     55
  AMP PEAK 10(6P22.3) WILD-TYPE    143     87     34
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         167                           143
  CLUS_2                          71                            87
  CLUS_3                          55                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       76     87    130
  AMP PEAK 10(6P22.3) WILD-TYPE     83     77    102
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          76                            83
  CLUS_2                          87                            77
  CLUS_3                         130                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(6P22.3) MUTATED       42      33     23     39     19     46
  AMP PEAK 10(6P22.3) WILD-TYPE     43      24     35     43     15     29
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 10(6P22.3) MUTATED       20     22     33     16
  AMP PEAK 10(6P22.3) WILD-TYPE     14     14     19     26
D10V4, multiclass
         clus
vv        AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           42                            43
  CLUS_10                          33                            24
  CLUS_2                           23                            35
  CLUS_3                           39                            43
  CLUS_4                           19                            15
  CLUS_5                           46                            29
  CLUS_6                           20                            14
  CLUS_7                           22                            14
  CLUS_8                           33                            19
  CLUS_9                           16                            26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       59    124    123
  AMP PEAK 10(6P22.3) WILD-TYPE    112     82     79
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          59                           112
  CLUS_2                         124                            82
  CLUS_3                         123                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED      104     78    117
  AMP PEAK 10(6P22.3) WILD-TYPE     68     97    104
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         104                            68
  CLUS_2                          78                            97
  CLUS_3                         117                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       66    106     33
  AMP PEAK 10(6P22.3) WILD-TYPE     54     90     49
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          66                            54
  CLUS_2                         106                            90
  CLUS_3                          33                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       67     52     65     21
  AMP PEAK 10(6P22.3) WILD-TYPE     49     44     63     37
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          67                            49
  CLUS_2                          52                            44
  CLUS_3                          65                            63
  CLUS_4                          21                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       51     35     50
  AMP PEAK 10(6P22.3) WILD-TYPE     49     32     41
D10V9, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          51                            49
  CLUS_2                          35                            32
  CLUS_3                          50                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       50     63     23
  AMP PEAK 10(6P22.3) WILD-TYPE     56     53     13
D10V10, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          50                            56
  CLUS_2                          63                            53
  CLUS_3                          23                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(6P22.3) MUTATED       57     99     79
  AMP PEAK 10(6P22.3) WILD-TYPE     64     83     65
D10V11, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          57                            64
  CLUS_2                          99                            83
  CLUS_3                          79                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(6P22.3) MUTATED       56     42     82     55
  AMP PEAK 10(6P22.3) WILD-TYPE     49     29     83     51
D10V12, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          56                            49
  CLUS_2                          42                            29
  CLUS_3                          82                            83
  CLUS_4                          55                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V13, binary
                               cls
clus                            0 1
  AMP PEAK 10(6P22.3) MUTATED   7 6
  AMP PEAK 10(6P22.3) WILD-TYPE 5 4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P22.3) MUTATED      7    6
  AMP PEAK 10(6P22.3) WILD-TYPE    5    4
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           6                             4
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(6P22.3) MUTATED        4      2      0      4      1      2
  AMP PEAK 10(6P22.3) WILD-TYPE      2      0      2      2      3      0
D10V14, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           2                             0
  CLUS_3                           0                             2
  CLUS_4                           4                             2
  CLUS_5                           1                             3
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED      121    126     59
  AMP PEAK 11(7Q36.3) WILD-TYPE     94     90     67
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         121                            94
  CLUS_2                         126                            90
  CLUS_3                          59                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED      177     77     52
  AMP PEAK 11(7Q36.3) WILD-TYPE    133     81     37
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         177                           133
  CLUS_2                          77                            81
  CLUS_3                          52                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       93     83    129
  AMP PEAK 11(7Q36.3) WILD-TYPE     66     81    103
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          93                            66
  CLUS_2                          83                            81
  CLUS_3                         129                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q36.3) MUTATED       47      34     28     46     19     40
  AMP PEAK 11(7Q36.3) WILD-TYPE     38      23     30     36     15     35
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 11(7Q36.3) MUTATED       20     21     28     22
  AMP PEAK 11(7Q36.3) WILD-TYPE     14     15     24     20
D11V4, multiclass
         clus
vv        AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           47                            38
  CLUS_10                          34                            23
  CLUS_2                           28                            30
  CLUS_3                           46                            36
  CLUS_4                           19                            15
  CLUS_5                           40                            35
  CLUS_6                           20                            14
  CLUS_7                           21                            15
  CLUS_8                           28                            24
  CLUS_9                           22                            20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       69    124    127
  AMP PEAK 11(7Q36.3) WILD-TYPE    102     82     75
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          69                           102
  CLUS_2                         124                            82
  CLUS_3                         127                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED      100     90    121
  AMP PEAK 11(7Q36.3) WILD-TYPE     72     85    100
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         100                            72
  CLUS_2                          90                            85
  CLUS_3                         121                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       56    117     38
  AMP PEAK 11(7Q36.3) WILD-TYPE     64     79     44
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          56                            64
  CLUS_2                         117                            79
  CLUS_3                          38                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED       53     56     73     29
  AMP PEAK 11(7Q36.3) WILD-TYPE     63     40     55     29
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          53                            63
  CLUS_2                          56                            40
  CLUS_3                          73                            55
  CLUS_4                          29                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       51     33     49
  AMP PEAK 11(7Q36.3) WILD-TYPE     49     34     42
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          51                            49
  CLUS_2                          33                            34
  CLUS_3                          49                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       55     59     19
  AMP PEAK 11(7Q36.3) WILD-TYPE     51     57     17
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          55                            51
  CLUS_2                          59                            57
  CLUS_3                          19                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q36.3) MUTATED       61     96     87
  AMP PEAK 11(7Q36.3) WILD-TYPE     60     86     57
D11V11, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          61                            60
  CLUS_2                          96                            86
  CLUS_3                          87                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q36.3) MUTATED       55     40     85     64
  AMP PEAK 11(7Q36.3) WILD-TYPE     50     31     80     42
D11V12, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          55                            50
  CLUS_2                          40                            31
  CLUS_3                          85                            80
  CLUS_4                          64                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V13, binary
                               cls
clus                            0 1
  AMP PEAK 11(7Q36.3) MUTATED   8 3
  AMP PEAK 11(7Q36.3) WILD-TYPE 4 7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q36.3) MUTATED      8    3
  AMP PEAK 11(7Q36.3) WILD-TYPE    4    7
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           8                             4
  CLUS_2                           3                             7
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(7Q36.3) MUTATED        5      1      1      1      2      1
  AMP PEAK 11(7Q36.3) WILD-TYPE      1      1      1      5      2      1
D11V14, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           1                             5
  CLUS_5                           2                             2
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       85     66     49
  AMP PEAK 12(8P11.21) WILD-TYPE    130    150     77
D12V1, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           85                            130
  CLUS_2                           66                            150
  CLUS_3                           49                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED      107     55     38
  AMP PEAK 12(8P11.21) WILD-TYPE    203    103     51
D12V2, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                          107                            203
  CLUS_2                           55                            103
  CLUS_3                           38                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       53     51     95
  AMP PEAK 12(8P11.21) WILD-TYPE    106    113    137
D12V3, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           53                            106
  CLUS_2                           51                            113
  CLUS_3                           95                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8P11.21) MUTATED       22      19     21     31     13     31
  AMP PEAK 12(8P11.21) WILD-TYPE     63      38     37     51     21     44
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 12(8P11.21) MUTATED       16     12     21     13
  AMP PEAK 12(8P11.21) WILD-TYPE     18     24     31     29
D12V4, multiclass
         clus
vv        AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            22                             63
  CLUS_10                           19                             38
  CLUS_2                            21                             37
  CLUS_3                            31                             51
  CLUS_4                            13                             21
  CLUS_5                            31                             44
  CLUS_6                            16                             18
  CLUS_7                            12                             24
  CLUS_8                            21                             31
  CLUS_9                            13                             29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       42     70     99
  AMP PEAK 12(8P11.21) WILD-TYPE    129    136    103
D12V5, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           42                            129
  CLUS_2                           70                            136
  CLUS_3                           99                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       78     57     72
  AMP PEAK 12(8P11.21) WILD-TYPE     94    118    149
D12V6, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           78                             94
  CLUS_2                           57                            118
  CLUS_3                           72                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       30     81     31
  AMP PEAK 12(8P11.21) WILD-TYPE     90    115     51
D12V7, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           30                             90
  CLUS_2                           81                            115
  CLUS_3                           31                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       42     31     52     17
  AMP PEAK 12(8P11.21) WILD-TYPE     74     65     76     41
D12V8, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           42                             74
  CLUS_2                           31                             65
  CLUS_3                           52                             76
  CLUS_4                           17                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       32     21     38
  AMP PEAK 12(8P11.21) WILD-TYPE     68     46     53
D12V9, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           32                             68
  CLUS_2                           21                             46
  CLUS_3                           38                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       32     42     17
  AMP PEAK 12(8P11.21) WILD-TYPE     74     74     19
D12V10, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           32                             74
  CLUS_2                           42                             74
  CLUS_3                           17                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8P11.21) MUTATED       41     68     49
  AMP PEAK 12(8P11.21) WILD-TYPE     80    114     95
D12V11, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           41                             80
  CLUS_2                           68                            114
  CLUS_3                           49                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8P11.21) MUTATED       30     24     65     39
  AMP PEAK 12(8P11.21) WILD-TYPE     75     47    100     67
D12V12, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           30                             75
  CLUS_2                           24                             47
  CLUS_3                           65                            100
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V13, binary
                                cls
clus                             0 1
  AMP PEAK 12(8P11.21) MUTATED   7 3
  AMP PEAK 12(8P11.21) WILD-TYPE 5 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(8P11.21) MUTATED      7    3
  AMP PEAK 12(8P11.21) WILD-TYPE    5    7
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8P11.21) MUTATED        2      1      1      2      2      2
  AMP PEAK 12(8P11.21) WILD-TYPE      4      1      1      4      2      0
D12V14, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              1
  CLUS_3                            1                              1
  CLUS_4                            2                              4
  CLUS_5                            2                              2
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      144    188    110
  AMP PEAK 13(8Q24.21) WILD-TYPE     71     28     16
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          144                             71
  CLUS_2                          188                             28
  CLUS_3                          110                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      245    144     53
  AMP PEAK 13(8Q24.21) WILD-TYPE     65     14     36
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          245                             65
  CLUS_2                          144                             14
  CLUS_3                           53                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      133    130    178
  AMP PEAK 13(8Q24.21) WILD-TYPE     26     34     54
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          133                             26
  CLUS_2                          130                             34
  CLUS_3                          178                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q24.21) MUTATED       71      46     43     67     31     64
  AMP PEAK 13(8Q24.21) WILD-TYPE     14      11     15     15      3     11
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 13(8Q24.21) MUTATED       24     27     30     38
  AMP PEAK 13(8Q24.21) WILD-TYPE     10      9     22      4
D13V4, multiclass
         clus
vv        AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            71                             14
  CLUS_10                           46                             11
  CLUS_2                            43                             15
  CLUS_3                            67                             15
  CLUS_4                            31                              3
  CLUS_5                            64                             11
  CLUS_6                            24                             10
  CLUS_7                            27                              9
  CLUS_8                            30                             22
  CLUS_9                            38                              4
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      113    200    148
  AMP PEAK 13(8Q24.21) WILD-TYPE     58      6     54
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          113                             58
  CLUS_2                          200                              6
  CLUS_3                          148                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      124    137    189
  AMP PEAK 13(8Q24.21) WILD-TYPE     48     38     32
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          124                             48
  CLUS_2                          137                             38
  CLUS_3                          189                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       95    156     66
  AMP PEAK 13(8Q24.21) WILD-TYPE     25     40     16
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           95                             25
  CLUS_2                          156                             40
  CLUS_3                           66                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       97     74     97     49
  AMP PEAK 13(8Q24.21) WILD-TYPE     19     22     31      9
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           97                             19
  CLUS_2                           74                             22
  CLUS_3                           97                             31
  CLUS_4                           49                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       90     61     56
  AMP PEAK 13(8Q24.21) WILD-TYPE     10      6     35
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           90                             10
  CLUS_2                           61                              6
  CLUS_3                           56                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       95     91     21
  AMP PEAK 13(8Q24.21) WILD-TYPE     11     25     15
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           95                             11
  CLUS_2                           91                             25
  CLUS_3                           21                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED      101    147    107
  AMP PEAK 13(8Q24.21) WILD-TYPE     20     35     37
D13V11, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          101                             20
  CLUS_2                          147                             35
  CLUS_3                          107                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       91     51    131     82
  AMP PEAK 13(8Q24.21) WILD-TYPE     14     20     34     24
D13V12, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           91                             14
  CLUS_2                           51                             20
  CLUS_3                          131                             34
  CLUS_4                           82                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V13, binary
                                cls
clus                              0  1
  AMP PEAK 13(8Q24.21) MUTATED   11  8
  AMP PEAK 13(8Q24.21) WILD-TYPE  1  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.21) MUTATED     11    8
  AMP PEAK 13(8Q24.21) WILD-TYPE    1    2
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           11                              1
  CLUS_2                            8                              2
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(8Q24.21) MUTATED        6      1      2      5      3      2
  AMP PEAK 13(8Q24.21) WILD-TYPE      0      1      0      1      1      0
D13V14, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            6                              0
  CLUS_2                            1                              1
  CLUS_3                            2                              0
  CLUS_4                            5                              1
  CLUS_5                            3                              1
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       97     91     55
  AMP PEAK 14(10P15.3) WILD-TYPE    118    125     71
D14V1, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           97                            118
  CLUS_2                           91                            125
  CLUS_3                           55                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED      130     65     48
  AMP PEAK 14(10P15.3) WILD-TYPE    180     93     41
D14V2, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                          130                            180
  CLUS_2                           65                             93
  CLUS_3                           48                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       72     59    111
  AMP PEAK 14(10P15.3) WILD-TYPE     87    105    121
D14V3, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           72                             87
  CLUS_2                           59                            105
  CLUS_3                          111                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10P15.3) MUTATED       32      21     25     40     20     30
  AMP PEAK 14(10P15.3) WILD-TYPE     53      36     33     42     14     45
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 14(10P15.3) MUTATED       18     15     28     13
  AMP PEAK 14(10P15.3) WILD-TYPE     16     21     24     29
D14V4, multiclass
         clus
vv        AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            32                             53
  CLUS_10                           21                             36
  CLUS_2                            25                             33
  CLUS_3                            40                             42
  CLUS_4                            20                             14
  CLUS_5                            30                             45
  CLUS_6                            18                             16
  CLUS_7                            15                             21
  CLUS_8                            28                             24
  CLUS_9                            13                             29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       45     81    126
  AMP PEAK 14(10P15.3) WILD-TYPE    126    125     76
D14V5, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           45                            126
  CLUS_2                           81                            125
  CLUS_3                          126                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       95     63     87
  AMP PEAK 14(10P15.3) WILD-TYPE     77    112    134
D14V6, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           95                             77
  CLUS_2                           63                            112
  CLUS_3                           87                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       48     91     34
  AMP PEAK 14(10P15.3) WILD-TYPE     72    105     48
D14V7, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           48                             72
  CLUS_2                           91                            105
  CLUS_3                           34                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       52     42     59     20
  AMP PEAK 14(10P15.3) WILD-TYPE     64     54     69     38
D14V8, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           52                             64
  CLUS_2                           42                             54
  CLUS_3                           59                             69
  CLUS_4                           20                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       42     22     42
  AMP PEAK 14(10P15.3) WILD-TYPE     58     45     49
D14V9, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           42                             58
  CLUS_2                           22                             45
  CLUS_3                           42                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       44     42     20
  AMP PEAK 14(10P15.3) WILD-TYPE     62     74     16
D14V10, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           44                             62
  CLUS_2                           42                             74
  CLUS_3                           20                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10P15.3) MUTATED       47     85     60
  AMP PEAK 14(10P15.3) WILD-TYPE     74     97     84
D14V11, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           47                             74
  CLUS_2                           85                             97
  CLUS_3                           60                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(10P15.3) MUTATED       37     33     82     40
  AMP PEAK 14(10P15.3) WILD-TYPE     68     38     83     66
D14V12, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           37                             68
  CLUS_2                           33                             38
  CLUS_3                           82                             83
  CLUS_4                           40                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V13, binary
                                cls
clus                             0 1
  AMP PEAK 14(10P15.3) MUTATED   8 6
  AMP PEAK 14(10P15.3) WILD-TYPE 4 4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(10P15.3) MUTATED      8    6
  AMP PEAK 14(10P15.3) WILD-TYPE    4    4
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                            6                              4
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10P15.3) MUTATED        4      1      0      4      3      2
  AMP PEAK 14(10P15.3) WILD-TYPE      2      1      2      2      1      0
D14V14, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            1                              1
  CLUS_3                            0                              2
  CLUS_4                            4                              2
  CLUS_5                            3                              1
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       70     63     46
  AMP PEAK 15(10Q22.3) WILD-TYPE    145    153     80
D15V1, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           70                            145
  CLUS_2                           63                            153
  CLUS_3                           46                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       91     55     33
  AMP PEAK 15(10Q22.3) WILD-TYPE    219    103     56
D15V2, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           91                            219
  CLUS_2                           55                            103
  CLUS_3                           33                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       47     57     75
  AMP PEAK 15(10Q22.3) WILD-TYPE    112    107    157
D15V3, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           47                            112
  CLUS_2                           57                            107
  CLUS_3                           75                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(10Q22.3) MUTATED       23      19     17     31     11     23
  AMP PEAK 15(10Q22.3) WILD-TYPE     62      38     41     51     23     52
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 15(10Q22.3) MUTATED       10     12     17     16
  AMP PEAK 15(10Q22.3) WILD-TYPE     24     24     35     26
D15V4, multiclass
         clus
vv        AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            23                             62
  CLUS_10                           19                             38
  CLUS_2                            17                             41
  CLUS_3                            31                             51
  CLUS_4                            11                             23
  CLUS_5                            23                             52
  CLUS_6                            10                             24
  CLUS_7                            12                             24
  CLUS_8                            17                             35
  CLUS_9                            16                             26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       44     66     74
  AMP PEAK 15(10Q22.3) WILD-TYPE    127    140    128
D15V5, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           44                            127
  CLUS_2                           66                            140
  CLUS_3                           74                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       52     58     70
  AMP PEAK 15(10Q22.3) WILD-TYPE    120    117    151
D15V6, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           52                            120
  CLUS_2                           58                            117
  CLUS_3                           70                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       34     63     24
  AMP PEAK 15(10Q22.3) WILD-TYPE     86    133     58
D15V7, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           34                             86
  CLUS_2                           63                            133
  CLUS_3                           24                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       34     33     37     17
  AMP PEAK 15(10Q22.3) WILD-TYPE     82     63     91     41
D15V8, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           34                             82
  CLUS_2                           33                             63
  CLUS_3                           37                             91
  CLUS_4                           17                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       35     21     23
  AMP PEAK 15(10Q22.3) WILD-TYPE     65     46     68
D15V9, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           35                             65
  CLUS_2                           21                             46
  CLUS_3                           23                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       34     34     11
  AMP PEAK 15(10Q22.3) WILD-TYPE     72     82     25
D15V10, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           34                             72
  CLUS_2                           34                             82
  CLUS_3                           11                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(10Q22.3) MUTATED       35     67     42
  AMP PEAK 15(10Q22.3) WILD-TYPE     86    115    102
D15V11, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           35                             86
  CLUS_2                           67                            115
  CLUS_3                           42                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(10Q22.3) MUTATED       33     20     59     32
  AMP PEAK 15(10Q22.3) WILD-TYPE     72     51    106     74
D15V12, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           20                             51
  CLUS_3                           59                            106
  CLUS_4                           32                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V13, binary
                                cls
clus                             0 1
  AMP PEAK 15(10Q22.3) MUTATED   5 6
  AMP PEAK 15(10Q22.3) WILD-TYPE 7 4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(10Q22.3) MUTATED      5    6
  AMP PEAK 15(10Q22.3) WILD-TYPE    7    4
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            6                              4
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(10Q22.3) MUTATED        3      0      0      4      2      2
  AMP PEAK 15(10Q22.3) WILD-TYPE      3      2      2      2      2      0
D15V14, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            4                              2
  CLUS_5                            2                              2
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       81    114     52
  AMP PEAK 16(11Q14.1) WILD-TYPE    134    102     74
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           81                            134
  CLUS_2                          114                            102
  CLUS_3                           52                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED      154     66     27
  AMP PEAK 16(11Q14.1) WILD-TYPE    156     92     62
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                          154                            156
  CLUS_2                           66                             92
  CLUS_3                           27                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       71     69    106
  AMP PEAK 16(11Q14.1) WILD-TYPE     88     95    126
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           71                             88
  CLUS_2                           69                             95
  CLUS_3                          106                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q14.1) MUTATED       36      20     29     41     15     29
  AMP PEAK 16(11Q14.1) WILD-TYPE     49      37     29     41     19     46
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 16(11Q14.1) MUTATED       15     20     18     23
  AMP PEAK 16(11Q14.1) WILD-TYPE     19     16     34     19
D16V4, multiclass
         clus
vv        AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            36                             49
  CLUS_10                           20                             37
  CLUS_2                            29                             29
  CLUS_3                            41                             41
  CLUS_4                            15                             19
  CLUS_5                            29                             46
  CLUS_6                            15                             19
  CLUS_7                            20                             16
  CLUS_8                            18                             34
  CLUS_9                            23                             19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       54    117     86
  AMP PEAK 16(11Q14.1) WILD-TYPE    117     89    116
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           54                            117
  CLUS_2                          117                             89
  CLUS_3                           86                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       82     59    111
  AMP PEAK 16(11Q14.1) WILD-TYPE     90    116    110
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           82                             90
  CLUS_2                           59                            116
  CLUS_3                          111                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       49     92     32
  AMP PEAK 16(11Q14.1) WILD-TYPE     71    104     50
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           49                             71
  CLUS_2                           92                            104
  CLUS_3                           32                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       49     50     49     25
  AMP PEAK 16(11Q14.1) WILD-TYPE     67     46     79     33
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           49                             67
  CLUS_2                           50                             46
  CLUS_3                           49                             79
  CLUS_4                           25                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       59     33     32
  AMP PEAK 16(11Q14.1) WILD-TYPE     41     34     59
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           59                             41
  CLUS_2                           33                             34
  CLUS_3                           32                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       56     58     10
  AMP PEAK 16(11Q14.1) WILD-TYPE     50     58     26
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           56                             50
  CLUS_2                           58                             58
  CLUS_3                           10                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q14.1) MUTATED       47     92     65
  AMP PEAK 16(11Q14.1) WILD-TYPE     74     90     79
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           47                             74
  CLUS_2                           92                             90
  CLUS_3                           65                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(11Q14.1) MUTATED       48     30     78     48
  AMP PEAK 16(11Q14.1) WILD-TYPE     57     41     87     58
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           48                             57
  CLUS_2                           30                             41
  CLUS_3                           78                             87
  CLUS_4                           48                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V13, binary
                                cls
clus                             0 1
  AMP PEAK 16(11Q14.1) MUTATED   8 2
  AMP PEAK 16(11Q14.1) WILD-TYPE 4 8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q14.1) MUTATED      8    2
  AMP PEAK 16(11Q14.1) WILD-TYPE    4    8
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                            2                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q14.1) MUTATED        4      0      1      2      1      2
  AMP PEAK 16(11Q14.1) WILD-TYPE      2      2      1      4      3      0
D16V14, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            2                              4
  CLUS_5                            1                              3
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED      137    114     64
  AMP PEAK 17(12P13.33) WILD-TYPE     78    102     62
D17V1, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           137                              78
  CLUS_2                           114                             102
  CLUS_3                            64                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED      175     77     63
  AMP PEAK 17(12P13.33) WILD-TYPE    135     81     26
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           175                             135
  CLUS_2                            77                              81
  CLUS_3                            63                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       82     93    139
  AMP PEAK 17(12P13.33) WILD-TYPE     77     71     93
D17V3, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            82                              77
  CLUS_2                            93                              71
  CLUS_3                           139                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12P13.33) MUTATED       41      28     34     48     19     40
  AMP PEAK 17(12P13.33) WILD-TYPE     44      29     24     34     15     35
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 17(12P13.33) MUTATED       25     18     39     22
  AMP PEAK 17(12P13.33) WILD-TYPE      9     18     13     20
D17V4, multiclass
         clus
vv        AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             41                              44
  CLUS_10                            28                              29
  CLUS_2                             34                              24
  CLUS_3                             48                              34
  CLUS_4                             19                              15
  CLUS_5                             40                              35
  CLUS_6                             25                               9
  CLUS_7                             18                              18
  CLUS_8                             39                              13
  CLUS_9                             22                              20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       71    111    148
  AMP PEAK 17(12P13.33) WILD-TYPE    100     95     54
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            71                             100
  CLUS_2                           111                              95
  CLUS_3                           148                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED      119     96    108
  AMP PEAK 17(12P13.33) WILD-TYPE     53     79    113
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           119                              53
  CLUS_2                            96                              79
  CLUS_3                           108                             113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       63    117     40
  AMP PEAK 17(12P13.33) WILD-TYPE     57     79     42
D17V7, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            63                              57
  CLUS_2                           117                              79
  CLUS_3                            40                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED       56     59     76     29
  AMP PEAK 17(12P13.33) WILD-TYPE     60     37     52     29
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            56                              60
  CLUS_2                            59                              37
  CLUS_3                            76                              52
  CLUS_4                            29                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       50     31     61
  AMP PEAK 17(12P13.33) WILD-TYPE     50     36     30
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            50                              50
  CLUS_2                            31                              36
  CLUS_3                            61                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       48     71     23
  AMP PEAK 17(12P13.33) WILD-TYPE     58     45     13
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            48                              58
  CLUS_2                            71                              45
  CLUS_3                            23                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12P13.33) MUTATED       71     96     83
  AMP PEAK 17(12P13.33) WILD-TYPE     50     86     61
D17V11, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            71                              50
  CLUS_2                            96                              86
  CLUS_3                            83                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12P13.33) MUTATED       45     45    103     57
  AMP PEAK 17(12P13.33) WILD-TYPE     60     26     62     49
D17V12, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            45                              60
  CLUS_2                            45                              26
  CLUS_3                           103                              62
  CLUS_4                            57                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V13, binary
                                 cls
clus                              0 1
  AMP PEAK 17(12P13.33) MUTATED   9 5
  AMP PEAK 17(12P13.33) WILD-TYPE 3 5
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(12P13.33) MUTATED      9    5
  AMP PEAK 17(12P13.33) WILD-TYPE    3    5
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             9                               3
  CLUS_2                             5                               5
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(12P13.33) MUTATED        3      1      1      3      4      2
  AMP PEAK 17(12P13.33) WILD-TYPE      3      1      1      3      0      0
D17V14, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             1                               1
  CLUS_3                             1                               1
  CLUS_4                             3                               3
  CLUS_5                             4                               0
  CLUS_6                             2                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED      123    104     71
  AMP PEAK 18(12P12.1) WILD-TYPE     92    112     55
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          123                             92
  CLUS_2                          104                            112
  CLUS_3                           71                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED      164     80     54
  AMP PEAK 18(12P12.1) WILD-TYPE    146     78     35
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          164                            146
  CLUS_2                           80                             78
  CLUS_3                           54                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       85     90    122
  AMP PEAK 18(12P12.1) WILD-TYPE     74     74    110
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           85                             74
  CLUS_2                           90                             74
  CLUS_3                          122                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P12.1) MUTATED       41      27     31     47     20     37
  AMP PEAK 18(12P12.1) WILD-TYPE     44      30     27     35     14     38
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 18(12P12.1) MUTATED       21     17     39     17
  AMP PEAK 18(12P12.1) WILD-TYPE     13     19     13     25
D18V4, multiclass
         clus
vv        AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            41                             44
  CLUS_10                           27                             30
  CLUS_2                            31                             27
  CLUS_3                            47                             35
  CLUS_4                            20                             14
  CLUS_5                            37                             38
  CLUS_6                            21                             13
  CLUS_7                            17                             19
  CLUS_8                            39                             13
  CLUS_9                            17                             25
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       66     98    149
  AMP PEAK 18(12P12.1) WILD-TYPE    105    108     53
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           66                            105
  CLUS_2                           98                            108
  CLUS_3                          149                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED      117     87    102
  AMP PEAK 18(12P12.1) WILD-TYPE     55     88    119
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          117                             55
  CLUS_2                           87                             88
  CLUS_3                          102                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       65    104     39
  AMP PEAK 18(12P12.1) WILD-TYPE     55     92     43
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           65                             55
  CLUS_2                          104                             92
  CLUS_3                           39                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED       61     48     76     23
  AMP PEAK 18(12P12.1) WILD-TYPE     55     48     52     35
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           61                             55
  CLUS_2                           48                             48
  CLUS_3                           76                             52
  CLUS_4                           23                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       50     28     59
  AMP PEAK 18(12P12.1) WILD-TYPE     50     39     32
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           50                             50
  CLUS_2                           28                             39
  CLUS_3                           59                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       52     62     23
  AMP PEAK 18(12P12.1) WILD-TYPE     54     54     13
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           52                             54
  CLUS_2                           62                             54
  CLUS_3                           23                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P12.1) MUTATED       69     91     79
  AMP PEAK 18(12P12.1) WILD-TYPE     52     91     65
D18V11, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           69                             52
  CLUS_2                           91                             91
  CLUS_3                           79                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(12P12.1) MUTATED       43     44    100     52
  AMP PEAK 18(12P12.1) WILD-TYPE     62     27     65     54
D18V12, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           44                             27
  CLUS_3                          100                             65
  CLUS_4                           52                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V13, binary
                                cls
clus                             0 1
  AMP PEAK 18(12P12.1) MUTATED   8 4
  AMP PEAK 18(12P12.1) WILD-TYPE 4 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(12P12.1) MUTATED      8    4
  AMP PEAK 18(12P12.1) WILD-TYPE    4    6
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                            4                              6
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P12.1) MUTATED        4      0      0      2      4      2
  AMP PEAK 18(12P12.1) WILD-TYPE      2      2      2      4      0      0
D18V14, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            2                              4
  CLUS_5                            4                              0
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       99     65     47
  AMP PEAK 19(12Q15) WILD-TYPE    116    151     79
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         99                          116
  CLUS_2                         65                          151
  CLUS_3                         47                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED      117     54     40
  AMP PEAK 19(12Q15) WILD-TYPE    193    104     49
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                        117                          193
  CLUS_2                         54                          104
  CLUS_3                         40                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       64     57     89
  AMP PEAK 19(12Q15) WILD-TYPE     95    107    143
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         64                           95
  CLUS_2                         57                          107
  CLUS_3                         89                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       31      13     23     29     15     24
  AMP PEAK 19(12Q15) WILD-TYPE     54      44     35     53     19     51
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 19(12Q15) MUTATED       15     16     33     11
  AMP PEAK 19(12Q15) WILD-TYPE     19     20     19     31
D19V4, multiclass
         clus
vv        AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          31                           54
  CLUS_10                         13                           44
  CLUS_2                          23                           35
  CLUS_3                          29                           53
  CLUS_4                          15                           19
  CLUS_5                          24                           51
  CLUS_6                          15                           19
  CLUS_7                          16                           20
  CLUS_8                          33                           19
  CLUS_9                          11                           31
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       52     58    112
  AMP PEAK 19(12Q15) WILD-TYPE    119    148     90
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         52                          119
  CLUS_2                         58                          148
  CLUS_3                        112                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       90     62     65
  AMP PEAK 19(12Q15) WILD-TYPE     82    113    156
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         90                           82
  CLUS_2                         62                          113
  CLUS_3                         65                          156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       43     83     23
  AMP PEAK 19(12Q15) WILD-TYPE     77    113     59
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         43                           77
  CLUS_2                         83                          113
  CLUS_3                         23                           59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       42     36     55     16
  AMP PEAK 19(12Q15) WILD-TYPE     74     60     73     42
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         42                           74
  CLUS_2                         36                           60
  CLUS_3                         55                           73
  CLUS_4                         16                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       35     20     51
  AMP PEAK 19(12Q15) WILD-TYPE     65     47     40
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         35                           65
  CLUS_2                         20                           47
  CLUS_3                         51                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       39     46     21
  AMP PEAK 19(12Q15) WILD-TYPE     67     70     15
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         39                           67
  CLUS_2                         46                           70
  CLUS_3                         21                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       46     67     55
  AMP PEAK 19(12Q15) WILD-TYPE     75    115     89
D19V11, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         46                           75
  CLUS_2                         67                          115
  CLUS_3                         55                           89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(12Q15) MUTATED       30     29     71     38
  AMP PEAK 19(12Q15) WILD-TYPE     75     42     94     68
D19V12, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         30                           75
  CLUS_2                         29                           42
  CLUS_3                         71                           94
  CLUS_4                         38                           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V13, binary
                              cls
clus                           0 1
  AMP PEAK 19(12Q15) MUTATED   7 3
  AMP PEAK 19(12Q15) WILD-TYPE 5 7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED      7    3
  AMP PEAK 19(12Q15) WILD-TYPE    5    7
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          7                            5
  CLUS_2                          3                            7
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED        3      0      0      2      3      2
  AMP PEAK 19(12Q15) WILD-TYPE      3      2      2      4      1      0
D19V14, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          3                            3
  CLUS_2                          0                            2
  CLUS_3                          0                            2
  CLUS_4                          2                            4
  CLUS_5                          3                            1
  CLUS_6                          2                            0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       70     48     26
  AMP PEAK 20(14Q11.2) WILD-TYPE    145    168    100
D20V1, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           70                            145
  CLUS_2                           48                            168
  CLUS_3                           26                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       80     33     31
  AMP PEAK 20(14Q11.2) WILD-TYPE    230    125     58
D20V2, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           80                            230
  CLUS_2                           33                            125
  CLUS_3                           31                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       45     35     63
  AMP PEAK 20(14Q11.2) WILD-TYPE    114    129    169
D20V3, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           45                            114
  CLUS_2                           35                            129
  CLUS_3                           63                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(14Q11.2) MUTATED       26      16     15     21     10      8
  AMP PEAK 20(14Q11.2) WILD-TYPE     59      41     43     61     24     67
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 20(14Q11.2) MUTATED       10     11     21      5
  AMP PEAK 20(14Q11.2) WILD-TYPE     24     25     31     37
D20V4, multiclass
         clus
vv        AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                            26                             59
  CLUS_10                           16                             41
  CLUS_2                            15                             43
  CLUS_3                            21                             61
  CLUS_4                            10                             24
  CLUS_5                             8                             67
  CLUS_6                            10                             24
  CLUS_7                            11                             25
  CLUS_8                            21                             31
  CLUS_9                             5                             37
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       33     56     59
  AMP PEAK 20(14Q11.2) WILD-TYPE    138    150    143
D20V5, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           33                            138
  CLUS_2                           56                            150
  CLUS_3                           59                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       52     38     56
  AMP PEAK 20(14Q11.2) WILD-TYPE    120    137    165
D20V6, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           52                            120
  CLUS_2                           38                            137
  CLUS_3                           56                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       26     48     15
  AMP PEAK 20(14Q11.2) WILD-TYPE     94    148     67
D20V7, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           26                             94
  CLUS_2                           48                            148
  CLUS_3                           15                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       23     26     30     10
  AMP PEAK 20(14Q11.2) WILD-TYPE     93     70     98     48
D20V8, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           23                             93
  CLUS_2                           26                             70
  CLUS_3                           30                             98
  CLUS_4                           10                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       21     20     26
  AMP PEAK 20(14Q11.2) WILD-TYPE     79     47     65
D20V9, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           21                             79
  CLUS_2                           20                             47
  CLUS_3                           26                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       23     33     11
  AMP PEAK 20(14Q11.2) WILD-TYPE     83     83     25
D20V10, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           23                             83
  CLUS_2                           33                             83
  CLUS_3                           11                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(14Q11.2) MUTATED       26     49     43
  AMP PEAK 20(14Q11.2) WILD-TYPE     95    133    101
D20V11, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           26                             95
  CLUS_2                           49                            133
  CLUS_3                           43                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(14Q11.2) MUTATED       26     20     41     31
  AMP PEAK 20(14Q11.2) WILD-TYPE     79     51    124     75
D20V12, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                           26                             79
  CLUS_2                           20                             51
  CLUS_3                           41                            124
  CLUS_4                           31                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V13, binary
                                cls
clus                             0 1
  AMP PEAK 20(14Q11.2) MUTATED   4 1
  AMP PEAK 20(14Q11.2) WILD-TYPE 8 9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(14Q11.2) MUTATED      4    1
  AMP PEAK 20(14Q11.2) WILD-TYPE    8    9
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                            4                              8
  CLUS_2                            1                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(14Q11.2) MUTATED        3      0      0      0      1      1
  AMP PEAK 20(14Q11.2) WILD-TYPE      3      2      2      6      3      1
D20V14, multiclass
        clus
vv       AMP PEAK 20(14Q11.2) MUTATED AMP PEAK 20(14Q11.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            0                              6
  CLUS_5                            1                              3
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(14Q32.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       52     64     34
  AMP PEAK 21(14Q32.33) WILD-TYPE    163    152     92
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            52                             163
  CLUS_2                            64                             152
  CLUS_3                            34                              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       83     46     21
  AMP PEAK 21(14Q32.33) WILD-TYPE    227    112     68
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            83                             227
  CLUS_2                            46                             112
  CLUS_3                            21                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       50     37     63
  AMP PEAK 21(14Q32.33) WILD-TYPE    109    127    169
D21V3, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            50                             109
  CLUS_2                            37                             127
  CLUS_3                            63                             169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q32.33) MUTATED       25      12     12     26     11     11
  AMP PEAK 21(14Q32.33) WILD-TYPE     60      45     46     56     23     64
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 21(14Q32.33) MUTATED        5     15     17     16
  AMP PEAK 21(14Q32.33) WILD-TYPE     29     21     35     26
D21V4, multiclass
         clus
vv        AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                             25                              60
  CLUS_10                            12                              45
  CLUS_2                             12                              46
  CLUS_3                             26                              56
  CLUS_4                             11                              23
  CLUS_5                             11                              64
  CLUS_6                              5                              29
  CLUS_7                             15                              21
  CLUS_8                             17                              35
  CLUS_9                             16                              26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       41     77     38
  AMP PEAK 21(14Q32.33) WILD-TYPE    130    129    164
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            41                             130
  CLUS_2                            77                             129
  CLUS_3                            38                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       39     47     66
  AMP PEAK 21(14Q32.33) WILD-TYPE    133    128    155
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            39                             133
  CLUS_2                            47                             128
  CLUS_3                            66                             155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       30     49     21
  AMP PEAK 21(14Q32.33) WILD-TYPE     90    147     61
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            30                              90
  CLUS_2                            49                             147
  CLUS_3                            21                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       34     25     24     17
  AMP PEAK 21(14Q32.33) WILD-TYPE     82     71    104     41
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            34                              82
  CLUS_2                            25                              71
  CLUS_3                            24                             104
  CLUS_4                            17                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       32     23     20
  AMP PEAK 21(14Q32.33) WILD-TYPE     68     44     71
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            32                              68
  CLUS_2                            23                              44
  CLUS_3                            20                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       37     29      9
  AMP PEAK 21(14Q32.33) WILD-TYPE     69     87     27
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            37                              69
  CLUS_2                            29                              87
  CLUS_3                             9                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q32.33) MUTATED       28     55     37
  AMP PEAK 21(14Q32.33) WILD-TYPE     93    127    107
D21V11, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            28                              93
  CLUS_2                            55                             127
  CLUS_3                            37                             107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(14Q32.33) MUTATED       34     16     45     25
  AMP PEAK 21(14Q32.33) WILD-TYPE     71     55    120     81
D21V12, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                            34                              71
  CLUS_2                            16                              55
  CLUS_3                            45                             120
  CLUS_4                            25                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V13, binary
                                 cls
clus                               0  1
  AMP PEAK 21(14Q32.33) MUTATED    4  0
  AMP PEAK 21(14Q32.33) WILD-TYPE  8 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(14Q32.33) MUTATED      4    0
  AMP PEAK 21(14Q32.33) WILD-TYPE    8   10
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                             4                               8
  CLUS_2                             0                              10
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q32.33) MUTATED        3      0      0      0      0      1
  AMP PEAK 21(14Q32.33) WILD-TYPE      3      2      2      6      4      1
D21V14, multiclass
        clus
vv       AMP PEAK 21(14Q32.33) MUTATED AMP PEAK 21(14Q32.33) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             0                               2
  CLUS_3                             0                               2
  CLUS_4                             0                               6
  CLUS_5                             0                               4
  CLUS_6                             1                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       60     72     28
  AMP PEAK 22(15Q26.3) WILD-TYPE    155    144     98
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           60                            155
  CLUS_2                           72                            144
  CLUS_3                           28                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       96     40     24
  AMP PEAK 22(15Q26.3) WILD-TYPE    214    118     65
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           96                            214
  CLUS_2                           40                            118
  CLUS_3                           24                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       51     46     62
  AMP PEAK 22(15Q26.3) WILD-TYPE    108    118    170
D22V3, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           51                            108
  CLUS_2                           46                            118
  CLUS_3                           62                            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       29      15     10     27      7     18
  AMP PEAK 22(15Q26.3) WILD-TYPE     56      42     48     55     27     57
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 22(15Q26.3) MUTATED       11     12     16     14
  AMP PEAK 22(15Q26.3) WILD-TYPE     23     24     36     28
D22V4, multiclass
         clus
vv        AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            29                             56
  CLUS_10                           15                             42
  CLUS_2                            10                             48
  CLUS_3                            27                             55
  CLUS_4                             7                             27
  CLUS_5                            18                             57
  CLUS_6                            11                             23
  CLUS_7                            12                             24
  CLUS_8                            16                             36
  CLUS_9                            14                             28
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       34     90     39
  AMP PEAK 22(15Q26.3) WILD-TYPE    137    116    163
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           34                            137
  CLUS_2                           90                            116
  CLUS_3                           39                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       46     49     66
  AMP PEAK 22(15Q26.3) WILD-TYPE    126    126    155
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           46                            126
  CLUS_2                           49                            126
  CLUS_3                           66                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       35     58     23
  AMP PEAK 22(15Q26.3) WILD-TYPE     85    138     59
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           35                             85
  CLUS_2                           58                            138
  CLUS_3                           23                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       28     30     35     23
  AMP PEAK 22(15Q26.3) WILD-TYPE     88     66     93     35
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           28                             88
  CLUS_2                           30                             66
  CLUS_3                           35                             93
  CLUS_4                           23                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       27     24     21
  AMP PEAK 22(15Q26.3) WILD-TYPE     73     43     70
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           27                             73
  CLUS_2                           24                             43
  CLUS_3                           21                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       28     36      8
  AMP PEAK 22(15Q26.3) WILD-TYPE     78     80     28
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           28                             78
  CLUS_2                           36                             80
  CLUS_3                            8                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       24     53     41
  AMP PEAK 22(15Q26.3) WILD-TYPE     97    129    103
D22V11, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           24                             97
  CLUS_2                           53                            129
  CLUS_3                           41                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(15Q26.3) MUTATED       33     16     34     35
  AMP PEAK 22(15Q26.3) WILD-TYPE     72     55    131     71
D22V12, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           33                             72
  CLUS_2                           16                             55
  CLUS_3                           34                            131
  CLUS_4                           35                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V13, binary
                                cls
clus                             0 1
  AMP PEAK 22(15Q26.3) MUTATED   5 3
  AMP PEAK 22(15Q26.3) WILD-TYPE 7 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(15Q26.3) MUTATED      5    3
  AMP PEAK 22(15Q26.3) WILD-TYPE    7    7
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        2      0      0      3      2      1
  AMP PEAK 22(15Q26.3) WILD-TYPE      4      2      2      3      2      1
D22V14, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            3                              3
  CLUS_5                            2                              2
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       77     78     53
  AMP PEAK 23(17Q25.3) WILD-TYPE    138    138     73
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           77                            138
  CLUS_2                           78                            138
  CLUS_3                           53                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED      103     70     35
  AMP PEAK 23(17Q25.3) WILD-TYPE    207     88     54
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                          103                            207
  CLUS_2                           70                             88
  CLUS_3                           35                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       59     61     88
  AMP PEAK 23(17Q25.3) WILD-TYPE    100    103    144
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           59                            100
  CLUS_2                           61                            103
  CLUS_3                           88                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q25.3) MUTATED       32      20     21     29     10     35
  AMP PEAK 23(17Q25.3) WILD-TYPE     53      37     37     53     24     40
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 23(17Q25.3) MUTATED        9     14     19     19
  AMP PEAK 23(17Q25.3) WILD-TYPE     25     22     33     23
D23V4, multiclass
         clus
vv        AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            32                             53
  CLUS_10                           20                             37
  CLUS_2                            21                             37
  CLUS_3                            29                             53
  CLUS_4                            10                             24
  CLUS_5                            35                             40
  CLUS_6                             9                             25
  CLUS_7                            14                             22
  CLUS_8                            19                             33
  CLUS_9                            19                             23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       53     95     67
  AMP PEAK 23(17Q25.3) WILD-TYPE    118    111    135
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           53                            118
  CLUS_2                           95                            111
  CLUS_3                           67                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       64     62     86
  AMP PEAK 23(17Q25.3) WILD-TYPE    108    113    135
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           64                            108
  CLUS_2                           62                            113
  CLUS_3                           86                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       51     64     37
  AMP PEAK 23(17Q25.3) WILD-TYPE     69    132     45
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           51                             69
  CLUS_2                           64                            132
  CLUS_3                           37                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       50     28     48     26
  AMP PEAK 23(17Q25.3) WILD-TYPE     66     68     80     32
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           50                             66
  CLUS_2                           28                             68
  CLUS_3                           48                             80
  CLUS_4                           26                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       48     28     25
  AMP PEAK 23(17Q25.3) WILD-TYPE     52     39     66
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           48                             52
  CLUS_2                           28                             39
  CLUS_3                           25                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       52     37     12
  AMP PEAK 23(17Q25.3) WILD-TYPE     54     79     24
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           52                             54
  CLUS_2                           37                             79
  CLUS_3                           12                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q25.3) MUTATED       52     70     49
  AMP PEAK 23(17Q25.3) WILD-TYPE     69    112     95
D23V11, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           52                             69
  CLUS_2                           70                            112
  CLUS_3                           49                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(17Q25.3) MUTATED       45     19     68     39
  AMP PEAK 23(17Q25.3) WILD-TYPE     60     52     97     67
D23V12, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           45                             60
  CLUS_2                           19                             52
  CLUS_3                           68                             97
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V13, binary
                                cls
clus                             0 1
  AMP PEAK 23(17Q25.3) MUTATED   6 5
  AMP PEAK 23(17Q25.3) WILD-TYPE 6 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17Q25.3) MUTATED      6    5
  AMP PEAK 23(17Q25.3) WILD-TYPE    6    5
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            5                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q25.3) MUTATED        3      0      2      3      2      1
  AMP PEAK 23(17Q25.3) WILD-TYPE      3      2      0      3      2      1
D23V14, multiclass
        clus
vv       AMP PEAK 23(17Q25.3) MUTATED AMP PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              2
  CLUS_3                            2                              0
  CLUS_4                            3                              3
  CLUS_5                            2                              2
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       51     56     33
  AMP PEAK 24(18Q11.2) WILD-TYPE    164    160     93
D24V1, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           51                            164
  CLUS_2                           56                            160
  CLUS_3                           33                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       76     39     25
  AMP PEAK 24(18Q11.2) WILD-TYPE    234    119     64
D24V2, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           76                            234
  CLUS_2                           39                            119
  CLUS_3                           25                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       41     40     58
  AMP PEAK 24(18Q11.2) WILD-TYPE    118    124    174
D24V3, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           41                            118
  CLUS_2                           40                            124
  CLUS_3                           58                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(18Q11.2) MUTATED       17      16     16     24     11     16
  AMP PEAK 24(18Q11.2) WILD-TYPE     68      41     42     58     23     59
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 24(18Q11.2) MUTATED       10     12     13      4
  AMP PEAK 24(18Q11.2) WILD-TYPE     24     24     39     38
D24V4, multiclass
         clus
vv        AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            17                             68
  CLUS_10                           16                             41
  CLUS_2                            16                             42
  CLUS_3                            24                             58
  CLUS_4                            11                             23
  CLUS_5                            16                             59
  CLUS_6                            10                             24
  CLUS_7                            12                             24
  CLUS_8                            13                             39
  CLUS_9                             4                             38
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       25     44     74
  AMP PEAK 24(18Q11.2) WILD-TYPE    146    162    128
D24V5, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           25                            146
  CLUS_2                           44                            162
  CLUS_3                           74                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       56     30     56
  AMP PEAK 24(18Q11.2) WILD-TYPE    116    145    165
D24V6, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           56                            116
  CLUS_2                           30                            145
  CLUS_3                           56                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       29     55     14
  AMP PEAK 24(18Q11.2) WILD-TYPE     91    141     68
D24V7, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           29                             91
  CLUS_2                           55                            141
  CLUS_3                           14                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       24     22     38     14
  AMP PEAK 24(18Q11.2) WILD-TYPE     92     74     90     44
D24V8, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           24                             92
  CLUS_2                           22                             74
  CLUS_3                           38                             90
  CLUS_4                           14                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       32     10     22
  AMP PEAK 24(18Q11.2) WILD-TYPE     68     57     69
D24V9, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           32                             68
  CLUS_2                           10                             57
  CLUS_3                           22                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       34     24      6
  AMP PEAK 24(18Q11.2) WILD-TYPE     72     92     30
D24V10, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           34                             72
  CLUS_2                           24                             92
  CLUS_3                            6                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(18Q11.2) MUTATED       36     46     28
  AMP PEAK 24(18Q11.2) WILD-TYPE     85    136    116
D24V11, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           36                             85
  CLUS_2                           46                            136
  CLUS_3                           28                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(18Q11.2) MUTATED       24     17     47     22
  AMP PEAK 24(18Q11.2) WILD-TYPE     81     54    118     84
D24V12, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           24                             81
  CLUS_2                           17                             54
  CLUS_3                           47                            118
  CLUS_4                           22                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V13, binary
                                cls
clus                             0 1
  AMP PEAK 24(18Q11.2) MUTATED   5 2
  AMP PEAK 24(18Q11.2) WILD-TYPE 7 8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(18Q11.2) MUTATED      5    2
  AMP PEAK 24(18Q11.2) WILD-TYPE    7    8
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            2                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(18Q11.2) MUTATED        4      0      0      0      2      1
  AMP PEAK 24(18Q11.2) WILD-TYPE      2      2      2      6      2      1
D24V14, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            0                              6
  CLUS_5                            2                              2
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED      136    115     51
  AMP PEAK 25(19P13.12) WILD-TYPE     79    101     75
D25V1, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           136                              79
  CLUS_2                           115                             101
  CLUS_3                            51                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED      186     64     52
  AMP PEAK 25(19P13.12) WILD-TYPE    124     94     37
D25V2, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           186                             124
  CLUS_2                            64                              94
  CLUS_3                            52                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       85     77    139
  AMP PEAK 25(19P13.12) WILD-TYPE     74     87     93
D25V3, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            85                              74
  CLUS_2                            77                              87
  CLUS_3                           139                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       41      35     39     45     15     39
  AMP PEAK 25(19P13.12) WILD-TYPE     44      22     19     37     19     36
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 25(19P13.12) MUTATED       21     18     30     18
  AMP PEAK 25(19P13.12) WILD-TYPE     13     18     22     24
D25V4, multiclass
         clus
vv        AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             41                              44
  CLUS_10                            35                              22
  CLUS_2                             39                              19
  CLUS_3                             45                              37
  CLUS_4                             15                              19
  CLUS_5                             39                              36
  CLUS_6                             21                              13
  CLUS_7                             18                              18
  CLUS_8                             30                              22
  CLUS_9                             18                              24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       72     92    151
  AMP PEAK 25(19P13.12) WILD-TYPE     99    114     51
D25V5, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            72                              99
  CLUS_2                            92                             114
  CLUS_3                           151                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED      118     73    116
  AMP PEAK 25(19P13.12) WILD-TYPE     54    102    105
D25V6, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                           118                              54
  CLUS_2                            73                             102
  CLUS_3                           116                             105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       59    125     32
  AMP PEAK 25(19P13.12) WILD-TYPE     61     71     50
D25V7, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            59                              61
  CLUS_2                           125                              71
  CLUS_3                            32                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED       44     55     86     31
  AMP PEAK 25(19P13.12) WILD-TYPE     72     41     42     27
D25V8, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            44                              72
  CLUS_2                            55                              41
  CLUS_3                            86                              42
  CLUS_4                            31                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       52     33     56
  AMP PEAK 25(19P13.12) WILD-TYPE     48     34     35
D25V9, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            52                              48
  CLUS_2                            33                              34
  CLUS_3                            56                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       53     67     21
  AMP PEAK 25(19P13.12) WILD-TYPE     53     49     15
D25V10, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            53                              53
  CLUS_2                            67                              49
  CLUS_3                            21                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       62    104     81
  AMP PEAK 25(19P13.12) WILD-TYPE     59     78     63
D25V11, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            62                              59
  CLUS_2                           104                              78
  CLUS_3                            81                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(19P13.12) MUTATED       49     36    101     61
  AMP PEAK 25(19P13.12) WILD-TYPE     56     35     64     45
D25V12, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            49                              56
  CLUS_2                            36                              35
  CLUS_3                           101                              64
  CLUS_4                            61                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V13, binary
                                 cls
clus                              0 1
  AMP PEAK 25(19P13.12) MUTATED   7 5
  AMP PEAK 25(19P13.12) WILD-TYPE 5 5
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19P13.12) MUTATED      7    5
  AMP PEAK 25(19P13.12) WILD-TYPE    5    5
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             7                               5
  CLUS_2                             5                               5
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED        5      1      1      3      2      0
  AMP PEAK 25(19P13.12) WILD-TYPE      1      1      1      3      2      2
D25V14, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             5                               1
  CLUS_2                             1                               1
  CLUS_3                             1                               1
  CLUS_4                             3                               3
  CLUS_5                             2                               2
  CLUS_6                             0                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      128    124     61
  AMP PEAK 26(19Q12) WILD-TYPE     87     92     65
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        128                           87
  CLUS_2                        124                           92
  CLUS_3                         61                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      186     72     55
  AMP PEAK 26(19Q12) WILD-TYPE    124     86     34
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        186                          124
  CLUS_2                         72                           86
  CLUS_3                         55                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       92     78    141
  AMP PEAK 26(19Q12) WILD-TYPE     67     86     91
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         92                           67
  CLUS_2                         78                           86
  CLUS_3                        141                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       44      31     35     46     19     41
  AMP PEAK 26(19Q12) WILD-TYPE     41      26     23     36     15     34
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 26(19Q12) MUTATED       24     20     33     18
  AMP PEAK 26(19Q12) WILD-TYPE     10     16     19     24
D26V4, multiclass
         clus
vv        AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          44                           41
  CLUS_10                         31                           26
  CLUS_2                          35                           23
  CLUS_3                          46                           36
  CLUS_4                          19                           15
  CLUS_5                          41                           34
  CLUS_6                          24                           10
  CLUS_7                          20                           16
  CLUS_8                          33                           19
  CLUS_9                          18                           24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       67     83    172
  AMP PEAK 26(19Q12) WILD-TYPE    104    123     30
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         67                          104
  CLUS_2                         83                          123
  CLUS_3                        172                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED      128     70    121
  AMP PEAK 26(19Q12) WILD-TYPE     44    105    100
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        128                           44
  CLUS_2                         70                          105
  CLUS_3                        121                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       57    119     41
  AMP PEAK 26(19Q12) WILD-TYPE     63     77     41
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         57                           63
  CLUS_2                        119                           77
  CLUS_3                         41                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       61     52     78     26
  AMP PEAK 26(19Q12) WILD-TYPE     55     44     50     32
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         61                           55
  CLUS_2                         52                           44
  CLUS_3                         78                           50
  CLUS_4                         26                           32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       58     34     54
  AMP PEAK 26(19Q12) WILD-TYPE     42     33     37
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         58                           42
  CLUS_2                         34                           33
  CLUS_3                         54                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       60     62     24
  AMP PEAK 26(19Q12) WILD-TYPE     46     54     12
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         60                           46
  CLUS_2                         62                           54
  CLUS_3                         24                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       64    111     80
  AMP PEAK 26(19Q12) WILD-TYPE     57     71     64
D26V11, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         64                           57
  CLUS_2                        111                           71
  CLUS_3                         80                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(19Q12) MUTATED       50     39    106     60
  AMP PEAK 26(19Q12) WILD-TYPE     55     32     59     46
D26V12, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         50                           55
  CLUS_2                         39                           32
  CLUS_3                        106                           59
  CLUS_4                         60                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V13, binary
                              cls
clus                           0 1
  AMP PEAK 26(19Q12) MUTATED   7 5
  AMP PEAK 26(19Q12) WILD-TYPE 5 5
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 26(19Q12) MUTATED      7    5
  AMP PEAK 26(19Q12) WILD-TYPE    5    5
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          7                            5
  CLUS_2                          5                            5
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED        4      2      1      3      1      1
  AMP PEAK 26(19Q12) WILD-TYPE      2      0      1      3      3      1
D26V14, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          4                            2
  CLUS_2                          2                            0
  CLUS_3                          1                            1
  CLUS_4                          3                            3
  CLUS_5                          1                            3
  CLUS_6                          1                            1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       93     90     54
  AMP PEAK 27(19Q13.2) WILD-TYPE    122    126     72
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           93                            122
  CLUS_2                           90                            126
  CLUS_3                           54                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED      132     63     42
  AMP PEAK 27(19Q13.2) WILD-TYPE    178     95     47
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                          132                            178
  CLUS_2                           63                             95
  CLUS_3                           42                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       64     74     97
  AMP PEAK 27(19Q13.2) WILD-TYPE     95     90    135
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           64                             95
  CLUS_2                           74                             90
  CLUS_3                           97                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.2) MUTATED       37      22     21     30     15     33
  AMP PEAK 27(19Q13.2) WILD-TYPE     48      35     37     52     19     42
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 27(19Q13.2) MUTATED       16     14     31     16
  AMP PEAK 27(19Q13.2) WILD-TYPE     18     22     21     26
D27V4, multiclass
         clus
vv        AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                            37                             48
  CLUS_10                           22                             35
  CLUS_2                            21                             37
  CLUS_3                            30                             52
  CLUS_4                            15                             19
  CLUS_5                            33                             42
  CLUS_6                            16                             18
  CLUS_7                            14                             22
  CLUS_8                            31                             21
  CLUS_9                            16                             26
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       51     71    123
  AMP PEAK 27(19Q13.2) WILD-TYPE    120    135     79
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           51                            120
  CLUS_2                           71                            135
  CLUS_3                          123                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       94     56     91
  AMP PEAK 27(19Q13.2) WILD-TYPE     78    119    130
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           94                             78
  CLUS_2                           56                            119
  CLUS_3                           91                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       48     90     32
  AMP PEAK 27(19Q13.2) WILD-TYPE     72    106     50
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           48                             72
  CLUS_2                           90                            106
  CLUS_3                           32                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       47     40     64     19
  AMP PEAK 27(19Q13.2) WILD-TYPE     69     56     64     39
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           47                             69
  CLUS_2                           40                             56
  CLUS_3                           64                             64
  CLUS_4                           19                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       43     23     41
  AMP PEAK 27(19Q13.2) WILD-TYPE     57     44     50
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           43                             57
  CLUS_2                           23                             44
  CLUS_3                           41                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       42     44     21
  AMP PEAK 27(19Q13.2) WILD-TYPE     64     72     15
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           42                             64
  CLUS_2                           44                             72
  CLUS_3                           21                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.2) MUTATED       53     79     61
  AMP PEAK 27(19Q13.2) WILD-TYPE     68    103     83
D27V11, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           53                             68
  CLUS_2                           79                            103
  CLUS_3                           61                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(19Q13.2) MUTATED       42     36     70     45
  AMP PEAK 27(19Q13.2) WILD-TYPE     63     35     95     61
D27V12, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                           42                             63
  CLUS_2                           36                             35
  CLUS_3                           70                             95
  CLUS_4                           45                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V13, binary
                                cls
clus                             0 1
  AMP PEAK 27(19Q13.2) MUTATED   5 3
  AMP PEAK 27(19Q13.2) WILD-TYPE 7 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(19Q13.2) MUTATED      5    3
  AMP PEAK 27(19Q13.2) WILD-TYPE    7    7
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.2) MUTATED        2      0      1      2      1      2
  AMP PEAK 27(19Q13.2) WILD-TYPE      4      2      1      4      3      0
D27V14, multiclass
        clus
vv       AMP PEAK 27(19Q13.2) MUTATED AMP PEAK 27(19Q13.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            2                              4
  CLUS_5                            1                              3
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED      127    111     64
  AMP PEAK 28(20P13) WILD-TYPE     88    105     62
D28V1, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                        127                           88
  CLUS_2                        111                          105
  CLUS_3                         64                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED      161     79     62
  AMP PEAK 28(20P13) WILD-TYPE    149     79     27
D28V2, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                        161                          149
  CLUS_2                         79                           79
  CLUS_3                         62                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       87     80    134
  AMP PEAK 28(20P13) WILD-TYPE     72     84     98
D28V3, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         87                           72
  CLUS_2                         80                           84
  CLUS_3                        134                           98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20P13) MUTATED       41      28     36     44     19     44
  AMP PEAK 28(20P13) WILD-TYPE     44      29     22     38     15     31
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 28(20P13) MUTATED       23     19     34     13
  AMP PEAK 28(20P13) WILD-TYPE     11     17     18     29
D28V4, multiclass
         clus
vv        AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                          41                           44
  CLUS_10                         28                           29
  CLUS_2                          36                           22
  CLUS_3                          44                           38
  CLUS_4                          19                           15
  CLUS_5                          44                           31
  CLUS_6                          23                           11
  CLUS_7                          19                           17
  CLUS_8                          34                           18
  CLUS_9                          13                           29
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       69     97    151
  AMP PEAK 28(20P13) WILD-TYPE    102    109     51
D28V5, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         69                          102
  CLUS_2                         97                          109
  CLUS_3                        151                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED      123     81    103
  AMP PEAK 28(20P13) WILD-TYPE     49     94    118
D28V6, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                        123                           49
  CLUS_2                         81                           94
  CLUS_3                        103                          118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       60    115     45
  AMP PEAK 28(20P13) WILD-TYPE     60     81     37
D28V7, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         60                           60
  CLUS_2                        115                           81
  CLUS_3                         45                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED       68     51     73     28
  AMP PEAK 28(20P13) WILD-TYPE     48     45     55     30
D28V8, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         68                           48
  CLUS_2                         51                           45
  CLUS_3                         73                           55
  CLUS_4                         28                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       50     30     60
  AMP PEAK 28(20P13) WILD-TYPE     50     37     31
D28V9, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         50                           50
  CLUS_2                         30                           37
  CLUS_3                         60                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       53     64     23
  AMP PEAK 28(20P13) WILD-TYPE     53     52     13
D28V10, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         53                           53
  CLUS_2                         64                           52
  CLUS_3                         23                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20P13) MUTATED       73     99     72
  AMP PEAK 28(20P13) WILD-TYPE     48     83     72
D28V11, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         73                           48
  CLUS_2                         99                           83
  CLUS_3                         72                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(20P13) MUTATED       44     44    106     50
  AMP PEAK 28(20P13) WILD-TYPE     61     27     59     56
D28V12, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                         44                           61
  CLUS_2                         44                           27
  CLUS_3                        106                           59
  CLUS_4                         50                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V13, binary
                              cls
clus                           0 1
  AMP PEAK 28(20P13) MUTATED   5 5
  AMP PEAK 28(20P13) WILD-TYPE 7 5
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 28(20P13) MUTATED      5    5
  AMP PEAK 28(20P13) WILD-TYPE    7    5
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                          5                            7
  CLUS_2                          5                            5
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20P13) MUTATED        3      1      0      3      2      1
  AMP PEAK 28(20P13) WILD-TYPE      3      1      2      3      2      1
D28V14, multiclass
        clus
vv       AMP PEAK 28(20P13) MUTATED AMP PEAK 28(20P13) WILD-TYPE
  CLUS_1                          3                            3
  CLUS_2                          1                            1
  CLUS_3                          0                            2
  CLUS_4                          3                            3
  CLUS_5                          2                            2
  CLUS_6                          1                            1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED      144    110     78
  AMP PEAK 29(20Q11.21) WILD-TYPE     71    106     48
D29V1, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           144                              71
  CLUS_2                           110                             106
  CLUS_3                            78                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED      178     87     67
  AMP PEAK 29(20Q11.21) WILD-TYPE    132     71     22
D29V2, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           178                             132
  CLUS_2                            87                              71
  CLUS_3                            67                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       99     87    146
  AMP PEAK 29(20Q11.21) WILD-TYPE     60     77     86
D29V3, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            99                              60
  CLUS_2                            87                              77
  CLUS_3                           146                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(20Q11.21) MUTATED       45      33     36     44     20     45
  AMP PEAK 29(20Q11.21) WILD-TYPE     40      24     22     38     14     30
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 29(20Q11.21) MUTATED       29     22     40     18
  AMP PEAK 29(20Q11.21) WILD-TYPE      5     14     12     24
D29V4, multiclass
         clus
vv        AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                             45                              40
  CLUS_10                            33                              24
  CLUS_2                             36                              22
  CLUS_3                             44                              38
  CLUS_4                             20                              14
  CLUS_5                             45                              30
  CLUS_6                             29                               5
  CLUS_7                             22                              14
  CLUS_8                             40                              12
  CLUS_9                             18                              24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       79     95    174
  AMP PEAK 29(20Q11.21) WILD-TYPE     92    111     28
D29V5, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            79                              92
  CLUS_2                            95                             111
  CLUS_3                           174                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED      140     91    109
  AMP PEAK 29(20Q11.21) WILD-TYPE     32     84    112
D29V6, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                           140                              32
  CLUS_2                            91                              84
  CLUS_3                           109                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       66    126     44
  AMP PEAK 29(20Q11.21) WILD-TYPE     54     70     38
D29V7, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            66                              54
  CLUS_2                           126                              70
  CLUS_3                            44                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED       74     53     84     25
  AMP PEAK 29(20Q11.21) WILD-TYPE     42     43     44     33
D29V8, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            74                              42
  CLUS_2                            53                              43
  CLUS_3                            84                              44
  CLUS_4                            25                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       63     28     67
  AMP PEAK 29(20Q11.21) WILD-TYPE     37     39     24
D29V9, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            63                              37
  CLUS_2                            28                              39
  CLUS_3                            67                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       66     64     28
  AMP PEAK 29(20Q11.21) WILD-TYPE     40     52      8
D29V10, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            66                              40
  CLUS_2                            64                              52
  CLUS_3                            28                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(20Q11.21) MUTATED       79    114     81
  AMP PEAK 29(20Q11.21) WILD-TYPE     42     68     63
D29V11, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            79                              42
  CLUS_2                           114                              68
  CLUS_3                            81                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(20Q11.21) MUTATED       52     46    119     57
  AMP PEAK 29(20Q11.21) WILD-TYPE     53     25     46     49
D29V12, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                            52                              53
  CLUS_2                            46                              25
  CLUS_3                           119                              46
  CLUS_4                            57                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V13, binary
                                 cls
clus                              0 1
  AMP PEAK 29(20Q11.21) MUTATED   6 5
  AMP PEAK 29(20Q11.21) WILD-TYPE 6 5
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 29(20Q11.21) MUTATED      6    5
  AMP PEAK 29(20Q11.21) WILD-TYPE    6    5
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                             6                               6
  CLUS_2                             5                               5
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(20Q11.21) MUTATED        5      1      0      3      1      1
  AMP PEAK 29(20Q11.21) WILD-TYPE      1      1      2      3      3      1
D29V14, multiclass
        clus
vv       AMP PEAK 29(20Q11.21) MUTATED AMP PEAK 29(20Q11.21) WILD-TYPE
  CLUS_1                             5                               1
  CLUS_2                             1                               1
  CLUS_3                             0                               2
  CLUS_4                             3                               3
  CLUS_5                             1                               3
  CLUS_6                             1                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      164    136     86
  AMP PEAK 30(20Q13.33) WILD-TYPE     51     80     40
D30V1, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           164                              51
  CLUS_2                           136                              80
  CLUS_3                            86                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      207    103     76
  AMP PEAK 30(20Q13.33) WILD-TYPE    103     55     13
D30V2, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           207                             103
  CLUS_2                           103                              55
  CLUS_3                            76                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      106    116    163
  AMP PEAK 30(20Q13.33) WILD-TYPE     53     48     69
D30V3, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           106                              53
  CLUS_2                           116                              48
  CLUS_3                           163                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(20Q13.33) MUTATED       49      35     41     52     29     54
  AMP PEAK 30(20Q13.33) WILD-TYPE     36      22     17     30      5     21
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 30(20Q13.33) MUTATED       29     26     45     25
  AMP PEAK 30(20Q13.33) WILD-TYPE      5     10      7     17
D30V4, multiclass
         clus
vv        AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                             49                              36
  CLUS_10                            35                              22
  CLUS_2                             41                              17
  CLUS_3                             52                              30
  CLUS_4                             29                               5
  CLUS_5                             54                              21
  CLUS_6                             29                               5
  CLUS_7                             26                              10
  CLUS_8                             45                               7
  CLUS_9                             25                              17
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       87    132    183
  AMP PEAK 30(20Q13.33) WILD-TYPE     84     74     19
D30V5, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            87                              84
  CLUS_2                           132                              74
  CLUS_3                           183                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED      144    109    140
  AMP PEAK 30(20Q13.33) WILD-TYPE     28     66     81
D30V6, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                           144                              28
  CLUS_2                           109                              66
  CLUS_3                           140                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       83    138     55
  AMP PEAK 30(20Q13.33) WILD-TYPE     37     58     27
D30V7, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            83                              37
  CLUS_2                           138                              58
  CLUS_3                            55                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED       77     63     97     39
  AMP PEAK 30(20Q13.33) WILD-TYPE     39     33     31     19
D30V8, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            77                              39
  CLUS_2                            63                              33
  CLUS_3                            97                              31
  CLUS_4                            39                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       67     40     74
  AMP PEAK 30(20Q13.33) WILD-TYPE     33     27     17
D30V9, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            67                              33
  CLUS_2                            40                              27
  CLUS_3                            74                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       72     76     33
  AMP PEAK 30(20Q13.33) WILD-TYPE     34     40      3
D30V10, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            72                              34
  CLUS_2                            76                              40
  CLUS_3                            33                               3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(20Q13.33) MUTATED       89    132     97
  AMP PEAK 30(20Q13.33) WILD-TYPE     32     50     47
D30V11, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            89                              32
  CLUS_2                           132                              50
  CLUS_3                            97                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(20Q13.33) MUTATED       69     53    128     68
  AMP PEAK 30(20Q13.33) WILD-TYPE     36     18     37     38
D30V12, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            69                              36
  CLUS_2                            53                              18
  CLUS_3                           128                              37
  CLUS_4                            68                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V13, binary
                                 cls
clus                               0  1
  AMP PEAK 30(20Q13.33) MUTATED   10  7
  AMP PEAK 30(20Q13.33) WILD-TYPE  2  3
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 30(20Q13.33) MUTATED     10    7
  AMP PEAK 30(20Q13.33) WILD-TYPE    2    3
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                            10                               2
  CLUS_2                             7                               3
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(20Q13.33) MUTATED        6      2      0      3      4      2
  AMP PEAK 30(20Q13.33) WILD-TYPE      0      0      2      3      0      0
D30V14, multiclass
        clus
vv       AMP PEAK 30(20Q13.33) MUTATED AMP PEAK 30(20Q13.33) WILD-TYPE
  CLUS_1                             6                               0
  CLUS_2                             2                               0
  CLUS_3                             0                               2
  CLUS_4                             3                               3
  CLUS_5                             4                               0
  CLUS_6                             2                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       34     38     17
  AMP PEAK 31(22Q12.2) WILD-TYPE    181    178    109
D31V1, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           34                            181
  CLUS_2                           38                            178
  CLUS_3                           17                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       57     23      9
  AMP PEAK 31(22Q12.2) WILD-TYPE    253    135     80
D31V2, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           57                            253
  CLUS_2                           23                            135
  CLUS_3                            9                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       27     17     43
  AMP PEAK 31(22Q12.2) WILD-TYPE    132    147    189
D31V3, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           27                            132
  CLUS_2                           17                            147
  CLUS_3                           43                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(22Q12.2) MUTATED       11       7     15     16      4     16
  AMP PEAK 31(22Q12.2) WILD-TYPE     74      50     43     66     30     59
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 31(22Q12.2) MUTATED        5      8      3      2
  AMP PEAK 31(22Q12.2) WILD-TYPE     29     28     49     40
D31V4, multiclass
         clus
vv        AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                            11                             74
  CLUS_10                            7                             50
  CLUS_2                            15                             43
  CLUS_3                            16                             66
  CLUS_4                             4                             30
  CLUS_5                            16                             59
  CLUS_6                             5                             29
  CLUS_7                             8                             28
  CLUS_8                             3                             49
  CLUS_9                             2                             40
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       15     40     36
  AMP PEAK 31(22Q12.2) WILD-TYPE    156    166    166
D31V5, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           15                            156
  CLUS_2                           40                            166
  CLUS_3                           36                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       27     14     48
  AMP PEAK 31(22Q12.2) WILD-TYPE    145    161    173
D31V6, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           27                            145
  CLUS_2                           14                            161
  CLUS_3                           48                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       20     34     13
  AMP PEAK 31(22Q12.2) WILD-TYPE    100    162     69
D31V7, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           20                            100
  CLUS_2                           34                            162
  CLUS_3                           13                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       19     11     21     16
  AMP PEAK 31(22Q12.2) WILD-TYPE     97     85    107     42
D31V8, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           19                             97
  CLUS_2                           11                             85
  CLUS_3                           21                            107
  CLUS_4                           16                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       20      5     11
  AMP PEAK 31(22Q12.2) WILD-TYPE     80     62     80
D31V9, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           20                             80
  CLUS_2                            5                             62
  CLUS_3                           11                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       21     13      2
  AMP PEAK 31(22Q12.2) WILD-TYPE     85    103     34
D31V10, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           21                             85
  CLUS_2                           13                            103
  CLUS_3                            2                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(22Q12.2) MUTATED       19     36     16
  AMP PEAK 31(22Q12.2) WILD-TYPE    102    146    128
D31V11, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           19                            102
  CLUS_2                           36                            146
  CLUS_3                           16                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(22Q12.2) MUTATED       15      8     38     10
  AMP PEAK 31(22Q12.2) WILD-TYPE     90     63    127     96
D31V12, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                           15                             90
  CLUS_2                            8                             63
  CLUS_3                           38                            127
  CLUS_4                           10                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V13, binary
                                cls
clus                              0  1
  AMP PEAK 31(22Q12.2) MUTATED    2  2
  AMP PEAK 31(22Q12.2) WILD-TYPE 10  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 31(22Q12.2) MUTATED      2    2
  AMP PEAK 31(22Q12.2) WILD-TYPE   10    8
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                            2                             10
  CLUS_2                            2                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(22Q12.2) MUTATED        0      0      0      1      3      0
  AMP PEAK 31(22Q12.2) WILD-TYPE      6      2      2      5      1      2
D31V14, multiclass
        clus
vv       AMP PEAK 31(22Q12.2) MUTATED AMP PEAK 31(22Q12.2) WILD-TYPE
  CLUS_1                            0                              6
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            1                              5
  CLUS_5                            3                              1
  CLUS_6                            0                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       56     64     33
  AMP PEAK 32(XP11.23) WILD-TYPE    159    152     93
D32V1, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           56                            159
  CLUS_2                           64                            152
  CLUS_3                           33                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       88     41     24
  AMP PEAK 32(XP11.23) WILD-TYPE    222    117     65
D32V2, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           88                            222
  CLUS_2                           41                            117
  CLUS_3                           24                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       44     39     69
  AMP PEAK 32(XP11.23) WILD-TYPE    115    125    163
D32V3, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           44                            115
  CLUS_2                           39                            125
  CLUS_3                           69                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(XP11.23) MUTATED       21      11     18     28      9     24
  AMP PEAK 32(XP11.23) WILD-TYPE     64      46     40     54     25     51
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 32(XP11.23) MUTATED        7      9     16      9
  AMP PEAK 32(XP11.23) WILD-TYPE     27     27     36     33
D32V4, multiclass
         clus
vv        AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                            21                             64
  CLUS_10                           11                             46
  CLUS_2                            18                             40
  CLUS_3                            28                             54
  CLUS_4                             9                             25
  CLUS_5                            24                             51
  CLUS_6                             7                             27
  CLUS_7                             9                             27
  CLUS_8                            16                             36
  CLUS_9                             9                             33
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       25     55     79
  AMP PEAK 32(XP11.23) WILD-TYPE    146    151    123
D32V5, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           25                            146
  CLUS_2                           55                            151
  CLUS_3                           79                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       64     37     53
  AMP PEAK 32(XP11.23) WILD-TYPE    108    138    168
D32V6, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           64                            108
  CLUS_2                           37                            138
  CLUS_3                           53                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       28     54     21
  AMP PEAK 32(XP11.23) WILD-TYPE     92    142     61
D32V7, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           28                             92
  CLUS_2                           54                            142
  CLUS_3                           21                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       30     25     31     17
  AMP PEAK 32(XP11.23) WILD-TYPE     86     71     97     41
D32V8, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           30                             86
  CLUS_2                           25                             71
  CLUS_3                           31                             97
  CLUS_4                           17                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       31     16     30
  AMP PEAK 32(XP11.23) WILD-TYPE     69     51     61
D32V9, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           31                             69
  CLUS_2                           16                             51
  CLUS_3                           30                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       33     34     10
  AMP PEAK 32(XP11.23) WILD-TYPE     73     82     26
D32V10, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           33                             73
  CLUS_2                           34                             82
  CLUS_3                           10                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(XP11.23) MUTATED       41     47     38
  AMP PEAK 32(XP11.23) WILD-TYPE     80    135    106
D32V11, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           41                             80
  CLUS_2                           47                            135
  CLUS_3                           38                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(XP11.23) MUTATED       23     27     53     23
  AMP PEAK 32(XP11.23) WILD-TYPE     82     44    112     83
D32V12, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                           23                             82
  CLUS_2                           27                             44
  CLUS_3                           53                            112
  CLUS_4                           23                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V13, binary
                                cls
clus                             0 1
  AMP PEAK 32(XP11.23) MUTATED   5 3
  AMP PEAK 32(XP11.23) WILD-TYPE 7 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(XP11.23) MUTATED      5    3
  AMP PEAK 32(XP11.23) WILD-TYPE    7    7
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(XP11.23) MUTATED        3      0      0      3      2      0
  AMP PEAK 32(XP11.23) WILD-TYPE      3      2      2      3      2      2
D32V14, multiclass
        clus
vv       AMP PEAK 32(XP11.23) MUTATED AMP PEAK 32(XP11.23) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              2
  CLUS_3                            0                              2
  CLUS_4                            3                              3
  CLUS_5                            2                              2
  CLUS_6                            0                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       77     92     44
  AMP PEAK 33(XQ28) WILD-TYPE    138    124     82
D33V1, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        77                         138
  CLUS_2                        92                         124
  CLUS_3                        44                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED      119     58     36
  AMP PEAK 33(XQ28) WILD-TYPE    191    100     53
D33V2, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                       119                         191
  CLUS_2                        58                         100
  CLUS_3                        36                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       57     68     87
  AMP PEAK 33(XQ28) WILD-TYPE    102     96    145
D33V3, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        57                         102
  CLUS_2                        68                          96
  CLUS_3                        87                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(XQ28) MUTATED       32      15     25     28     12     38     10
  AMP PEAK 33(XQ28) WILD-TYPE     53      42     33     54     22     37     24
                             vv
clus                          CLUS_7 CLUS_8 CLUS_9
  AMP PEAK 33(XQ28) MUTATED       10     23     19
  AMP PEAK 33(XQ28) WILD-TYPE     26     29     23
D33V4, multiclass
         clus
vv        AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         32                          53
  CLUS_10                        15                          42
  CLUS_2                         25                          33
  CLUS_3                         28                          54
  CLUS_4                         12                          22
  CLUS_5                         38                          37
  CLUS_6                         10                          24
  CLUS_7                         10                          26
  CLUS_8                         23                          29
  CLUS_9                         19                          23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       46     96     78
  AMP PEAK 33(XQ28) WILD-TYPE    125    110    124
D33V5, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        46                         125
  CLUS_2                        96                         110
  CLUS_3                        78                         124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       61     61     95
  AMP PEAK 33(XQ28) WILD-TYPE    111    114    126
D33V6, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        61                         111
  CLUS_2                        61                         114
  CLUS_3                        95                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       50     76     27
  AMP PEAK 33(XQ28) WILD-TYPE     70    120     55
D33V7, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        50                          70
  CLUS_2                        76                         120
  CLUS_3                        27                          55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       48     39     49     17
  AMP PEAK 33(XQ28) WILD-TYPE     68     57     79     41
D33V8, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        48                          68
  CLUS_2                        39                          57
  CLUS_3                        49                          79
  CLUS_4                        17                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       41     26     31
  AMP PEAK 33(XQ28) WILD-TYPE     59     41     60
D33V9, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        41                          59
  CLUS_2                        26                          41
  CLUS_3                        31                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       39     45     14
  AMP PEAK 33(XQ28) WILD-TYPE     67     71     22
D33V10, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        39                          67
  CLUS_2                        45                          71
  CLUS_3                        14                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(XQ28) MUTATED       48     67     55
  AMP PEAK 33(XQ28) WILD-TYPE     73    115     89
D33V11, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        48                          73
  CLUS_2                        67                         115
  CLUS_3                        55                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(XQ28) MUTATED       40     30     63     37
  AMP PEAK 33(XQ28) WILD-TYPE     65     41    102     69
D33V12, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                        40                          65
  CLUS_2                        30                          41
  CLUS_3                        63                         102
  CLUS_4                        37                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V13, binary
                             cls
clus                          0 1
  AMP PEAK 33(XQ28) MUTATED   8 2
  AMP PEAK 33(XQ28) WILD-TYPE 4 8
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 33(XQ28) MUTATED      8    2
  AMP PEAK 33(XQ28) WILD-TYPE    4    8
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         8                           4
  CLUS_2                         2                           8
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(XQ28) MUTATED        3      0      1      2      2      2
  AMP PEAK 33(XQ28) WILD-TYPE      3      2      1      4      2      0
D33V14, multiclass
        clus
vv       AMP PEAK 33(XQ28) MUTATED AMP PEAK 33(XQ28) WILD-TYPE
  CLUS_1                         3                           3
  CLUS_2                         0                           2
  CLUS_3                         1                           1
  CLUS_4                         2                           4
  CLUS_5                         2                           2
  CLUS_6                         2                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED      104     99     63
  DEL PEAK  1(1P36.11) WILD-TYPE    111    117     63
D34V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          104                            111
  CLUS_2                           99                            117
  CLUS_3                           63                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED      138     76     52
  DEL PEAK  1(1P36.11) WILD-TYPE    172     82     37
D34V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          138                            172
  CLUS_2                           76                             82
  CLUS_3                           52                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       74     92     99
  DEL PEAK  1(1P36.11) WILD-TYPE     85     72    133
D34V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           74                             85
  CLUS_2                           92                             72
  CLUS_3                           99                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       46      20     31     34     13     33
  DEL PEAK  1(1P36.11) WILD-TYPE     39      37     27     48     21     42
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  1(1P36.11) MUTATED       14     21     31     22
  DEL PEAK  1(1P36.11) WILD-TYPE     20     15     21     20
D34V4, multiclass
         clus
vv        DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            46                             39
  CLUS_10                           20                             37
  CLUS_2                            31                             27
  CLUS_3                            34                             48
  CLUS_4                            13                             21
  CLUS_5                            33                             42
  CLUS_6                            14                             20
  CLUS_7                            21                             15
  CLUS_8                            31                             21
  CLUS_9                            22                             20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       87    113     69
  DEL PEAK  1(1P36.11) WILD-TYPE     84     93    133
D34V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           87                             84
  CLUS_2                          113                             93
  CLUS_3                           69                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       69     90    107
  DEL PEAK  1(1P36.11) WILD-TYPE    103     85    114
D34V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           69                            103
  CLUS_2                           90                             85
  CLUS_3                          107                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       65     83     39
  DEL PEAK  1(1P36.11) WILD-TYPE     55    113     43
D34V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           65                             55
  CLUS_2                           83                            113
  CLUS_3                           39                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       62     44     57     24
  DEL PEAK  1(1P36.11) WILD-TYPE     54     52     71     34
D34V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           62                             54
  CLUS_2                           44                             52
  CLUS_3                           57                             71
  CLUS_4                           24                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       41     28     41
  DEL PEAK  1(1P36.11) WILD-TYPE     59     39     50
D34V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             59
  CLUS_2                           28                             39
  CLUS_3                           41                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       44     47     19
  DEL PEAK  1(1P36.11) WILD-TYPE     62     69     17
D34V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           44                             62
  CLUS_2                           47                             69
  CLUS_3                           19                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       53     75     73
  DEL PEAK  1(1P36.11) WILD-TYPE     68    107     71
D34V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           53                             68
  CLUS_2                           75                            107
  CLUS_3                           73                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       50     38     64     49
  DEL PEAK  1(1P36.11) WILD-TYPE     55     33    101     57
D34V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           50                             55
  CLUS_2                           38                             33
  CLUS_3                           64                            101
  CLUS_4                           49                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V13, binary
                                cls
clus                             0 1
  DEL PEAK  1(1P36.11) MUTATED   5 3
  DEL PEAK  1(1P36.11) WILD-TYPE 7 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      5    3
  DEL PEAK  1(1P36.11) WILD-TYPE    7    7
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED        2      0      1      2      2      1
  DEL PEAK  1(1P36.11) WILD-TYPE      4      2      1      4      2      1
D34V14, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            2                              4
  CLUS_5                            2                              2
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  2(1Q41) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       26     40     25
  DEL PEAK  2(1Q41) WILD-TYPE    189    176    101
D35V1, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        26                         189
  CLUS_2                        40                         176
  CLUS_3                        25                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       50     29     12
  DEL PEAK  2(1Q41) WILD-TYPE    260    129     77
D35V2, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        50                         260
  CLUS_2                        29                         129
  CLUS_3                        12                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       30     21     40
  DEL PEAK  2(1Q41) WILD-TYPE    129    143    192
D35V3, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        30                         129
  CLUS_2                        21                         143
  CLUS_3                        40                         192
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q41) MUTATED       12      11      9     17      8     10      4
  DEL PEAK  2(1Q41) WILD-TYPE     73      46     49     65     26     65     30
                             vv
clus                          CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  2(1Q41) MUTATED        4      8      8
  DEL PEAK  2(1Q41) WILD-TYPE     32     44     34
D35V4, multiclass
         clus
vv        DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                         12                          73
  CLUS_10                        11                          46
  CLUS_2                          9                          49
  CLUS_3                         17                          65
  CLUS_4                          8                          26
  CLUS_5                         10                          65
  CLUS_6                          4                          30
  CLUS_7                          4                          32
  CLUS_8                          8                          44
  CLUS_9                          8                          34
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       14     60     23
  DEL PEAK  2(1Q41) WILD-TYPE    157    146    179
D35V5, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        14                         157
  CLUS_2                        60                         146
  CLUS_3                        23                         179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       22     28     45
  DEL PEAK  2(1Q41) WILD-TYPE    150    147    176
D35V6, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        22                         150
  CLUS_2                        28                         147
  CLUS_3                        45                         176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       14     31     14
  DEL PEAK  2(1Q41) WILD-TYPE    106    165     68
D35V7, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        14                         106
  CLUS_2                        31                         165
  CLUS_3                        14                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       14     11     17     17
  DEL PEAK  2(1Q41) WILD-TYPE    102     85    111     41
D35V8, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        14                         102
  CLUS_2                        11                          85
  CLUS_3                        17                         111
  CLUS_4                        17                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       18     10      9
  DEL PEAK  2(1Q41) WILD-TYPE     82     57     82
D35V9, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        18                          82
  CLUS_2                        10                          57
  CLUS_3                         9                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       20     13      4
  DEL PEAK  2(1Q41) WILD-TYPE     86    103     32
D35V10, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        20                          86
  CLUS_2                        13                         103
  CLUS_3                         4                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q41) MUTATED       19     31     22
  DEL PEAK  2(1Q41) WILD-TYPE    102    151    122
D35V11, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        19                         102
  CLUS_2                        31                         151
  CLUS_3                        22                         122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q41) MUTATED       16     12     28     16
  DEL PEAK  2(1Q41) WILD-TYPE     89     59    137     90
D35V12, multiclass
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                        16                          89
  CLUS_2                        12                          59
  CLUS_3                        28                         137
  CLUS_4                        16                          90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V13, binary
                             cls
clus                           0  1
  DEL PEAK  2(1Q41) MUTATED    0  1
  DEL PEAK  2(1Q41) WILD-TYPE 12  9
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1Q41) MUTATED      0    1
  DEL PEAK  2(1Q41) WILD-TYPE   12    9
        clus
vv       DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE
  CLUS_1                         0                          12
  CLUS_2                         1                           9
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1Q41) MUTATED        0      1      0      0      0      0
  DEL PEAK  2(1Q41) WILD-TYPE      6      1      2      6      4      2
D35V14, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  2(1Q41) MUTATED"
clus
  DEL PEAK  2(1Q41) MUTATED DEL PEAK  2(1Q41) WILD-TYPE 
                          1                          21 
                 TCGA-04-1652                  TCGA-09-2054 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-13-0908                  TCGA-23-2077 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-1928                  TCGA-24-2036 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-1918                  TCGA-61-2088 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-2098                  TCGA-61-2109 
"DEL PEAK  2(1Q41) WILD-TYPE" "DEL PEAK  2(1Q41) WILD-TYPE" 
                 TCGA-61-2111 
"DEL PEAK  2(1Q41) WILD-TYPE" 

Clustering(36) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       46     48     25
  DEL PEAK  3(2P25.3) WILD-TYPE    169    168    101
D36V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          46                           169
  CLUS_2                          48                           168
  CLUS_3                          25                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       73     32     14
  DEL PEAK  3(2P25.3) WILD-TYPE    237    126     75
D36V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          73                           237
  CLUS_2                          32                           126
  CLUS_3                          14                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       36     29     53
  DEL PEAK  3(2P25.3) WILD-TYPE    123    135    179
D36V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          36                           123
  CLUS_2                          29                           135
  CLUS_3                          53                           179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED       15      18     10     19      4     15
  DEL PEAK  3(2P25.3) WILD-TYPE     70      39     48     63     30     60
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  3(2P25.3) MUTATED        8     13      7      9
  DEL PEAK  3(2P25.3) WILD-TYPE     26     23     45     33
D36V4, multiclass
         clus
vv        DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           15                            70
  CLUS_10                          18                            39
  CLUS_2                           10                            48
  CLUS_3                           19                            63
  CLUS_4                            4                            30
  CLUS_5                           15                            60
  CLUS_6                            8                            26
  CLUS_7                           13                            23
  CLUS_8                            7                            45
  CLUS_9                            9                            33
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       32     49     39
  DEL PEAK  3(2P25.3) WILD-TYPE    139    157    163
D36V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          32                           139
  CLUS_2                          49                           157
  CLUS_3                          39                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       33     36     51
  DEL PEAK  3(2P25.3) WILD-TYPE    139    139    170
D36V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          33                           139
  CLUS_2                          36                           139
  CLUS_3                          51                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       21     49     16
  DEL PEAK  3(2P25.3) WILD-TYPE     99    147     66
D36V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                            99
  CLUS_2                          49                           147
  CLUS_3                          16                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       23     24     24     15
  DEL PEAK  3(2P25.3) WILD-TYPE     93     72    104     43
D36V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          23                            93
  CLUS_2                          24                            72
  CLUS_3                          24                           104
  CLUS_4                          15                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       22     21     14
  DEL PEAK  3(2P25.3) WILD-TYPE     78     46     77
D36V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          22                            78
  CLUS_2                          21                            46
  CLUS_3                          14                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       26     27      4
  DEL PEAK  3(2P25.3) WILD-TYPE     80     89     32
D36V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          26                            80
  CLUS_2                          27                            89
  CLUS_3                           4                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       28     38     32
  DEL PEAK  3(2P25.3) WILD-TYPE     93    144    112
D36V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          28                            93
  CLUS_2                          38                           144
  CLUS_3                          32                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       21     16     38     23
  DEL PEAK  3(2P25.3) WILD-TYPE     84     55    127     83
D36V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                            84
  CLUS_2                          16                            55
  CLUS_3                          38                           127
  CLUS_4                          23                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V13, binary
                               cls
clus                            0 1
  DEL PEAK  3(2P25.3) MUTATED   5 2
  DEL PEAK  3(2P25.3) WILD-TYPE 7 8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2P25.3) MUTATED      5    2
  DEL PEAK  3(2P25.3) WILD-TYPE    7    8
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           5                             7
  CLUS_2                           2                             8
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        2      1      0      1      1      2
  DEL PEAK  3(2P25.3) WILD-TYPE      4      1      2      5      3      0
D36V14, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                             4
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           1                             5
  CLUS_5                           1                             3
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       42     54     37
  DEL PEAK  4(2Q22.1) WILD-TYPE    173    162     89
D37V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          42                           173
  CLUS_2                          54                           162
  CLUS_3                          37                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       81     36     16
  DEL PEAK  4(2Q22.1) WILD-TYPE    229    122     73
D37V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          81                           229
  CLUS_2                          36                           122
  CLUS_3                          16                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       43     37     53
  DEL PEAK  4(2Q22.1) WILD-TYPE    116    127    179
D37V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          43                           116
  CLUS_2                          37                           127
  CLUS_3                          53                           179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED       22       8      8     20     14     18
  DEL PEAK  4(2Q22.1) WILD-TYPE     63      49     50     62     20     57
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  4(2Q22.1) MUTATED        4     17     12     10
  DEL PEAK  4(2Q22.1) WILD-TYPE     30     19     40     32
D37V4, multiclass
         clus
vv        DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           22                            63
  CLUS_10                           8                            49
  CLUS_2                            8                            50
  CLUS_3                           20                            62
  CLUS_4                           14                            20
  CLUS_5                           18                            57
  CLUS_6                            4                            30
  CLUS_7                           17                            19
  CLUS_8                           12                            40
  CLUS_9                           10                            32
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       32     59     46
  DEL PEAK  4(2Q22.1) WILD-TYPE    139    147    156
D37V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          32                           139
  CLUS_2                          59                           147
  CLUS_3                          46                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       37     44     55
  DEL PEAK  4(2Q22.1) WILD-TYPE    135    131    166
D37V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          37                           135
  CLUS_2                          44                           131
  CLUS_3                          55                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       26     52     19
  DEL PEAK  4(2Q22.1) WILD-TYPE     94    144     63
D37V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          26                            94
  CLUS_2                          52                           144
  CLUS_3                          19                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       25     24     31     17
  DEL PEAK  4(2Q22.1) WILD-TYPE     91     72     97     41
D37V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          25                            91
  CLUS_2                          24                            72
  CLUS_3                          31                            97
  CLUS_4                          17                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       27     16     23
  DEL PEAK  4(2Q22.1) WILD-TYPE     73     51     68
D37V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          27                            73
  CLUS_2                          16                            51
  CLUS_3                          23                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       29     25     12
  DEL PEAK  4(2Q22.1) WILD-TYPE     77     91     24
D37V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          29                            77
  CLUS_2                          25                            91
  CLUS_3                          12                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       33     44     30
  DEL PEAK  4(2Q22.1) WILD-TYPE     88    138    114
D37V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          33                            88
  CLUS_2                          44                           138
  CLUS_3                          30                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED       30     16     39     22
  DEL PEAK  4(2Q22.1) WILD-TYPE     75     55    126     84
D37V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          30                            75
  CLUS_2                          16                            55
  CLUS_3                          39                           126
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V13, binary
                               cls
clus                            0 1
  DEL PEAK  4(2Q22.1) MUTATED   3 3
  DEL PEAK  4(2Q22.1) WILD-TYPE 9 7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q22.1) MUTATED      3    3
  DEL PEAK  4(2Q22.1) WILD-TYPE    9    7
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           3                             9
  CLUS_2                           3                             7
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        1      1      0      1      1      2
  DEL PEAK  4(2Q22.1) WILD-TYPE      5      1      2      5      3      0
D37V14, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           1                             1
  CLUS_3                           0                             2
  CLUS_4                           1                             5
  CLUS_5                           1                             3
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       51     78     41
  DEL PEAK  5(2Q37.3) WILD-TYPE    164    138     85
D38V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          51                           164
  CLUS_2                          78                           138
  CLUS_3                          41                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       94     53     23
  DEL PEAK  5(2Q37.3) WILD-TYPE    216    105     66
D38V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          94                           216
  CLUS_2                          53                           105
  CLUS_3                          23                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       45     49     76
  DEL PEAK  5(2Q37.3) WILD-TYPE    114    115    156
D38V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          45                           114
  CLUS_2                          49                           115
  CLUS_3                          76                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       23      12     16     31      9     24
  DEL PEAK  5(2Q37.3) WILD-TYPE     62      45     42     51     25     51
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  5(2Q37.3) MUTATED        6     20     14     15
  DEL PEAK  5(2Q37.3) WILD-TYPE     28     16     38     27
D38V4, multiclass
         clus
vv        DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           23                            62
  CLUS_10                          12                            45
  CLUS_2                           16                            42
  CLUS_3                           31                            51
  CLUS_4                            9                            25
  CLUS_5                           24                            51
  CLUS_6                            6                            28
  CLUS_7                           20                            16
  CLUS_8                           14                            38
  CLUS_9                           15                            27
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       35     86     54
  DEL PEAK  5(2Q37.3) WILD-TYPE    136    120    148
D38V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          35                           136
  CLUS_2                          86                           120
  CLUS_3                          54                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       45     49     79
  DEL PEAK  5(2Q37.3) WILD-TYPE    127    126    142
D38V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          45                           127
  CLUS_2                          49                           126
  CLUS_3                          79                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       33     61     26
  DEL PEAK  5(2Q37.3) WILD-TYPE     87    135     56
D38V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          33                            87
  CLUS_2                          61                           135
  CLUS_3                          26                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       39     24     39     18
  DEL PEAK  5(2Q37.3) WILD-TYPE     77     72     89     40
D38V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          39                            77
  CLUS_2                          24                            72
  CLUS_3                          39                            89
  CLUS_4                          18                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       46     21     24
  DEL PEAK  5(2Q37.3) WILD-TYPE     54     46     67
D38V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          46                            54
  CLUS_2                          21                            46
  CLUS_3                          24                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       50     29     12
  DEL PEAK  5(2Q37.3) WILD-TYPE     56     87     24
D38V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          50                            56
  CLUS_2                          29                            87
  CLUS_3                          12                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       42     66     33
  DEL PEAK  5(2Q37.3) WILD-TYPE     79    116    111
D38V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          42                            79
  CLUS_2                          66                           116
  CLUS_3                          33                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       45     19     52     25
  DEL PEAK  5(2Q37.3) WILD-TYPE     60     52    113     81
D38V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          45                            60
  CLUS_2                          19                            52
  CLUS_3                          52                           113
  CLUS_4                          25                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V13, binary
                               cls
clus                            0 1
  DEL PEAK  5(2Q37.3) MUTATED   4 1
  DEL PEAK  5(2Q37.3) WILD-TYPE 8 9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.3) MUTATED      4    1
  DEL PEAK  5(2Q37.3) WILD-TYPE    8    9
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                             8
  CLUS_2                           1                             9
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        1      0      1      2      1      0
  DEL PEAK  5(2Q37.3) WILD-TYPE      5      2      1      4      3      2
D38V14, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                             5
  CLUS_2                           0                             2
  CLUS_3                           1                             1
  CLUS_4                           2                             4
  CLUS_5                           1                             3
  CLUS_6                           0                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK  6(3P26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       88     69     47
  DEL PEAK  6(3P26.2) WILD-TYPE    127    147     79
D39V1, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          88                           127
  CLUS_2                          69                           147
  CLUS_3                          47                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED      101     54     49
  DEL PEAK  6(3P26.2) WILD-TYPE    209    104     40
D39V2, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                         101                           209
  CLUS_2                          54                           104
  CLUS_3                          49                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       54     47    102
  DEL PEAK  6(3P26.2) WILD-TYPE    105    117    130
D39V3, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          54                           105
  CLUS_2                          47                           117
  CLUS_3                         102                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P26.2) MUTATED       29      20     12     34     13     26
  DEL PEAK  6(3P26.2) WILD-TYPE     56      37     46     48     21     49
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  6(3P26.2) MUTATED       17     16     28      8
  DEL PEAK  6(3P26.2) WILD-TYPE     17     20     24     34
D39V4, multiclass
         clus
vv        DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           29                            56
  CLUS_10                          20                            37
  CLUS_2                           12                            46
  CLUS_3                           34                            48
  CLUS_4                           13                            21
  CLUS_5                           26                            49
  CLUS_6                           17                            17
  CLUS_7                           16                            20
  CLUS_8                           28                            24
  CLUS_9                            8                            34
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       47     66     96
  DEL PEAK  6(3P26.2) WILD-TYPE    124    140    106
D39V5, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          47                           124
  CLUS_2                          66                           140
  CLUS_3                          96                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       83     51     74
  DEL PEAK  6(3P26.2) WILD-TYPE     89    124    147
D39V6, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          83                            89
  CLUS_2                          51                           124
  CLUS_3                          74                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       40     68     27
  DEL PEAK  6(3P26.2) WILD-TYPE     80    128     55
D39V7, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          40                            80
  CLUS_2                          68                           128
  CLUS_3                          27                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       40     26     51     18
  DEL PEAK  6(3P26.2) WILD-TYPE     76     70     77     40
D39V8, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          40                            76
  CLUS_2                          26                            70
  CLUS_3                          51                            77
  CLUS_4                          18                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       40     15     44
  DEL PEAK  6(3P26.2) WILD-TYPE     60     52     47
D39V9, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          40                            60
  CLUS_2                          15                            52
  CLUS_3                          44                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       45     34     20
  DEL PEAK  6(3P26.2) WILD-TYPE     61     82     16
D39V10, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          45                            61
  CLUS_2                          34                            82
  CLUS_3                          20                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P26.2) MUTATED       49     68     50
  DEL PEAK  6(3P26.2) WILD-TYPE     72    114     94
D39V11, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          49                            72
  CLUS_2                          68                           114
  CLUS_3                          50                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P26.2) MUTATED       32     25     73     37
  DEL PEAK  6(3P26.2) WILD-TYPE     73     46     92     69
D39V12, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          32                            73
  CLUS_2                          25                            46
  CLUS_3                          73                            92
  CLUS_4                          37                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V13, binary
                               cls
clus                            0 1
  DEL PEAK  6(3P26.2) MUTATED   6 7
  DEL PEAK  6(3P26.2) WILD-TYPE 6 3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.2) MUTATED      6    7
  DEL PEAK  6(3P26.2) WILD-TYPE    6    3
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           6                             6
  CLUS_2                           7                             3
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P26.2) MUTATED        3      2      1      4      2      1
  DEL PEAK  6(3P26.2) WILD-TYPE      3      0      1      2      2      1
D39V14, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           2                             0
  CLUS_3                           1                             1
  CLUS_4                           4                             2
  CLUS_5                           2                             2
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       34     26     22
  DEL PEAK  7(3Q13.31) WILD-TYPE    181    190    104
D40V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           34                            181
  CLUS_2                           26                            190
  CLUS_3                           22                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       39     26     17
  DEL PEAK  7(3Q13.31) WILD-TYPE    271    132     72
D40V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           39                            271
  CLUS_2                           26                            132
  CLUS_3                           17                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       26     26     30
  DEL PEAK  7(3Q13.31) WILD-TYPE    133    138    202
D40V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           26                            133
  CLUS_2                           26                            138
  CLUS_3                           30                            202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED       11      13      6     13      6      9
  DEL PEAK  7(3Q13.31) WILD-TYPE     74      44     52     69     28     66
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  7(3Q13.31) MUTATED        6      3     10      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     28     33     42     37
D40V4, multiclass
         clus
vv        DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            11                             74
  CLUS_10                           13                             44
  CLUS_2                             6                             52
  CLUS_3                            13                             69
  CLUS_4                             6                             28
  CLUS_5                             9                             66
  CLUS_6                             6                             28
  CLUS_7                             3                             33
  CLUS_8                            10                             42
  CLUS_9                             5                             37
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       31     22     31
  DEL PEAK  7(3Q13.31) WILD-TYPE    140    184    171
D40V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           31                            140
  CLUS_2                           22                            184
  CLUS_3                           31                            171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       34     24     26
  DEL PEAK  7(3Q13.31) WILD-TYPE    138    151    195
D40V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           34                            138
  CLUS_2                           24                            151
  CLUS_3                           26                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       16     36      9
  DEL PEAK  7(3Q13.31) WILD-TYPE    104    160     73
D40V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           16                            104
  CLUS_2                           36                            160
  CLUS_3                            9                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       16     11     24     10
  DEL PEAK  7(3Q13.31) WILD-TYPE    100     85    104     48
D40V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           16                            100
  CLUS_2                           11                             85
  CLUS_3                           24                            104
  CLUS_4                           10                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       16      6     14
  DEL PEAK  7(3Q13.31) WILD-TYPE     84     61     77
D40V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           16                             84
  CLUS_2                            6                             61
  CLUS_3                           14                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       16     13      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     90    103     29
D40V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           16                             90
  CLUS_2                           13                            103
  CLUS_3                            7                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       17     31     18
  DEL PEAK  7(3Q13.31) WILD-TYPE    104    151    126
D40V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           17                            104
  CLUS_2                           31                            151
  CLUS_3                           18                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       19      9     26     12
  DEL PEAK  7(3Q13.31) WILD-TYPE     86     62    139     94
D40V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                             86
  CLUS_2                            9                             62
  CLUS_3                           26                            139
  CLUS_4                           12                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V13, binary
                                cls
clus                              0  1
  DEL PEAK  7(3Q13.31) MUTATED    1  1
  DEL PEAK  7(3Q13.31) WILD-TYPE 11  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(3Q13.31) MUTATED      1    1
  DEL PEAK  7(3Q13.31) WILD-TYPE   11    9
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             11
  CLUS_2                            1                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        1      1      0      0      0      0
  DEL PEAK  7(3Q13.31) WILD-TYPE      5      1      2      6      4      2
D40V14, multiclass
[1] "Remove cluster labels:"       "DEL PEAK  7(3Q13.31) MUTATED"
clus
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                             2                             20 
                    TCGA-09-2054                     TCGA-13-0908 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-23-2077                     TCGA-24-1928 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2036                     TCGA-24-2288 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2289                     TCGA-24-2290 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-24-2297                     TCGA-25-2392 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-25-2399                     TCGA-25-2400 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-25-2404                     TCGA-57-1994 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-59-2363                     TCGA-61-1918 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-61-2088                     TCGA-61-2098 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 
                    TCGA-61-2109                     TCGA-61-2111 
"DEL PEAK  7(3Q13.31) WILD-TYPE" "DEL PEAK  7(3Q13.31) WILD-TYPE" 

Clustering(41) Variable = DEL PEAK  8(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      158    141     78
  DEL PEAK  8(4Q22.1) WILD-TYPE     57     75     48
D41V1, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         158                            57
  CLUS_2                         141                            75
  CLUS_3                          78                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      212     96     69
  DEL PEAK  8(4Q22.1) WILD-TYPE     98     62     20
D41V2, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         212                            98
  CLUS_2                          96                            62
  CLUS_3                          69                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      108    111    157
  DEL PEAK  8(4Q22.1) WILD-TYPE     51     53     75
D41V3, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         108                            51
  CLUS_2                         111                            53
  CLUS_3                         157                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4Q22.1) MUTATED       57      39     39     57     17     46
  DEL PEAK  8(4Q22.1) WILD-TYPE     28      18     19     25     17     29
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  8(4Q22.1) MUTATED       25     26     43     27
  DEL PEAK  8(4Q22.1) WILD-TYPE      9     10      9     15
D41V4, multiclass
         clus
vv        DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           57                            28
  CLUS_10                          39                            18
  CLUS_2                           39                            19
  CLUS_3                           57                            25
  CLUS_4                           17                            17
  CLUS_5                           46                            29
  CLUS_6                           25                             9
  CLUS_7                           26                            10
  CLUS_8                           43                             9
  CLUS_9                           27                            15
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      114    128    152
  DEL PEAK  8(4Q22.1) WILD-TYPE     57     78     50
D41V5, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         114                            57
  CLUS_2                         128                            78
  CLUS_3                         152                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED      126    116    145
  DEL PEAK  8(4Q22.1) WILD-TYPE     46     59     76
D41V6, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                         126                            46
  CLUS_2                         116                            59
  CLUS_3                         145                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       80    139     49
  DEL PEAK  8(4Q22.1) WILD-TYPE     40     57     33
D41V7, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          80                            40
  CLUS_2                         139                            57
  CLUS_3                          49                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       72     69     94     33
  DEL PEAK  8(4Q22.1) WILD-TYPE     44     27     34     25
D41V8, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          72                            44
  CLUS_2                          69                            27
  CLUS_3                          94                            34
  CLUS_4                          33                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       65     41     70
  DEL PEAK  8(4Q22.1) WILD-TYPE     35     26     21
D41V9, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          65                            35
  CLUS_2                          41                            26
  CLUS_3                          70                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       69     79     28
  DEL PEAK  8(4Q22.1) WILD-TYPE     37     37      8
D41V10, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          69                            37
  CLUS_2                          79                            37
  CLUS_3                          28                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       78    122    105
  DEL PEAK  8(4Q22.1) WILD-TYPE     43     60     39
D41V11, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          78                            43
  CLUS_2                         122                            60
  CLUS_3                         105                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       66     48    111     80
  DEL PEAK  8(4Q22.1) WILD-TYPE     39     23     54     26
D41V12, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          66                            39
  CLUS_2                          48                            23
  CLUS_3                         111                            54
  CLUS_4                          80                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V13, binary
                               cls
clus                            0 1
  DEL PEAK  8(4Q22.1) MUTATED   7 7
  DEL PEAK  8(4Q22.1) WILD-TYPE 5 3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) MUTATED      7    7
  DEL PEAK  8(4Q22.1) WILD-TYPE    5    3
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           7                             3
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED        4      2      0      3      3      2
  DEL PEAK  8(4Q22.1) WILD-TYPE      2      0      2      3      1      0
D41V14, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           2                             0
  CLUS_3                           0                             2
  CLUS_4                           3                             3
  CLUS_5                           3                             1
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK  9(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      166    157     82
  DEL PEAK  9(4Q34.3) WILD-TYPE     49     59     44
D42V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         166                            49
  CLUS_2                         157                            59
  CLUS_3                          82                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      226    102     77
  DEL PEAK  9(4Q34.3) WILD-TYPE     84     56     12
D42V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         226                            84
  CLUS_2                         102                            56
  CLUS_3                          77                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      121    108    175
  DEL PEAK  9(4Q34.3) WILD-TYPE     38     56     57
D42V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         121                            38
  CLUS_2                         108                            56
  CLUS_3                         175                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q34.3) MUTATED       66      42     41     65     22     49
  DEL PEAK  9(4Q34.3) WILD-TYPE     19      15     17     17     12     26
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK  9(4Q34.3) MUTATED       29     24     43     23
  DEL PEAK  9(4Q34.3) WILD-TYPE      5     12      9     19
D42V4, multiclass
         clus
vv        DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           66                            19
  CLUS_10                          42                            15
  CLUS_2                           41                            17
  CLUS_3                           65                            17
  CLUS_4                           22                            12
  CLUS_5                           49                            26
  CLUS_6                           29                             5
  CLUS_7                           24                            12
  CLUS_8                           43                             9
  CLUS_9                           23                            19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      116    157    148
  DEL PEAK  9(4Q34.3) WILD-TYPE     55     49     54
D42V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         116                            55
  CLUS_2                         157                            49
  CLUS_3                         148                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED      130    124    160
  DEL PEAK  9(4Q34.3) WILD-TYPE     42     51     61
D42V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                         130                            42
  CLUS_2                         124                            51
  CLUS_3                         160                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       90    144     57
  DEL PEAK  9(4Q34.3) WILD-TYPE     30     52     25
D42V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          90                            30
  CLUS_2                         144                            52
  CLUS_3                          57                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       77     76     96     42
  DEL PEAK  9(4Q34.3) WILD-TYPE     39     20     32     16
D42V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          77                            39
  CLUS_2                          76                            20
  CLUS_3                          96                            32
  CLUS_4                          42                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       64     50     71
  DEL PEAK  9(4Q34.3) WILD-TYPE     36     17     20
D42V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          64                            36
  CLUS_2                          50                            17
  CLUS_3                          71                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       69     84     32
  DEL PEAK  9(4Q34.3) WILD-TYPE     37     32      4
D42V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          69                            37
  CLUS_2                          84                            32
  CLUS_3                          32                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       82    132    108
  DEL PEAK  9(4Q34.3) WILD-TYPE     39     50     36
D42V11, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          82                            39
  CLUS_2                         132                            50
  CLUS_3                         108                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q34.3) MUTATED       75     51    114     82
  DEL PEAK  9(4Q34.3) WILD-TYPE     30     20     51     24
D42V12, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          75                            30
  CLUS_2                          51                            20
  CLUS_3                         114                            51
  CLUS_4                          82                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V13, binary
                               cls
clus                            0 1
  DEL PEAK  9(4Q34.3) MUTATED   9 8
  DEL PEAK  9(4Q34.3) WILD-TYPE 3 2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q34.3) MUTATED      9    8
  DEL PEAK  9(4Q34.3) WILD-TYPE    3    2
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                           8                             2
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED        5      2      1      4      4      1
  DEL PEAK  9(4Q34.3) WILD-TYPE      1      0      1      2      0      1
D42V14, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           2                             0
  CLUS_3                           1                             1
  CLUS_4                           4                             2
  CLUS_5                           4                             0
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 10(5Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      134    133     75
  DEL PEAK 10(5Q12.1) WILD-TYPE     81     83     51
D43V1, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         134                            81
  CLUS_2                         133                            83
  CLUS_3                          75                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      189     96     57
  DEL PEAK 10(5Q12.1) WILD-TYPE    121     62     32
D43V2, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         189                           121
  CLUS_2                          96                            62
  CLUS_3                          57                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      102     96    144
  DEL PEAK 10(5Q12.1) WILD-TYPE     57     68     88
D43V3, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         102                            57
  CLUS_2                          96                            68
  CLUS_3                         144                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q12.1) MUTATED       49      29     33     45     22     48
  DEL PEAK 10(5Q12.1) WILD-TYPE     36      28     25     37     12     27
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 10(5Q12.1) MUTATED       24     30     37     25
  DEL PEAK 10(5Q12.1) WILD-TYPE     10      6     15     17
D43V4, multiclass
         clus
vv        DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           49                            36
  CLUS_10                          29                            28
  CLUS_2                           33                            25
  CLUS_3                           45                            37
  CLUS_4                           22                            12
  CLUS_5                           48                            27
  CLUS_6                           24                            10
  CLUS_7                           30                             6
  CLUS_8                           37                            15
  CLUS_9                           25                            17
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       73    145    137
  DEL PEAK 10(5Q12.1) WILD-TYPE     98     61     65
D43V5, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          73                            98
  CLUS_2                         145                            61
  CLUS_3                         137                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED      117     85    146
  DEL PEAK 10(5Q12.1) WILD-TYPE     55     90     75
D43V6, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                         117                            55
  CLUS_2                          85                            90
  CLUS_3                         146                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       78    118     50
  DEL PEAK 10(5Q12.1) WILD-TYPE     42     78     32
D43V7, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          78                            42
  CLUS_2                         118                            78
  CLUS_3                          50                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       72     60     81     33
  DEL PEAK 10(5Q12.1) WILD-TYPE     44     36     47     25
D43V8, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          72                            44
  CLUS_2                          60                            36
  CLUS_3                          81                            47
  CLUS_4                          33                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       62     34     56
  DEL PEAK 10(5Q12.1) WILD-TYPE     38     33     35
D43V9, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          62                            38
  CLUS_2                          34                            33
  CLUS_3                          56                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       68     59     25
  DEL PEAK 10(5Q12.1) WILD-TYPE     38     57     11
D43V10, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          68                            38
  CLUS_2                          59                            57
  CLUS_3                          25                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q12.1) MUTATED       80    119     81
  DEL PEAK 10(5Q12.1) WILD-TYPE     41     63     63
D43V11, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          80                            41
  CLUS_2                         119                            63
  CLUS_3                          81                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q12.1) MUTATED       72     43    106     59
  DEL PEAK 10(5Q12.1) WILD-TYPE     33     28     59     47
D43V12, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                          72                            33
  CLUS_2                          43                            28
  CLUS_3                         106                            59
  CLUS_4                          59                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V13, binary
                               cls
clus                            0 1
  DEL PEAK 10(5Q12.1) MUTATED   8 7
  DEL PEAK 10(5Q12.1) WILD-TYPE 4 3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q12.1) MUTATED      8    7
  DEL PEAK 10(5Q12.1) WILD-TYPE    4    3
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           8                             4
  CLUS_2                           7                             3
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q12.1) MUTATED        5      2      0      3      3      2
  DEL PEAK 10(5Q12.1) WILD-TYPE      1      0      2      3      1      0
D43V14, multiclass
        clus
vv       DEL PEAK 10(5Q12.1) MUTATED DEL PEAK 10(5Q12.1) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           2                             0
  CLUS_3                           0                             2
  CLUS_4                           3                             3
  CLUS_5                           3                             1
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 11(5Q13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      154    160     89
  DEL PEAK 11(5Q13.2) WILD-TYPE     61     56     37
D44V1, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         154                            61
  CLUS_2                         160                            56
  CLUS_3                          89                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      219    118     66
  DEL PEAK 11(5Q13.2) WILD-TYPE     91     40     23
D44V2, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         219                            91
  CLUS_2                         118                            40
  CLUS_3                          66                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      117    120    166
  DEL PEAK 11(5Q13.2) WILD-TYPE     42     44     66
D44V3, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         117                            42
  CLUS_2                         120                            44
  CLUS_3                         166                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q13.2) MUTATED       57      36     40     58     25     57
  DEL PEAK 11(5Q13.2) WILD-TYPE     28      21     18     24      9     18
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 11(5Q13.2) MUTATED       29     31     38     32
  DEL PEAK 11(5Q13.2) WILD-TYPE      5      5     14     10
D44V4, multiclass
         clus
vv        DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           57                            28
  CLUS_10                          36                            21
  CLUS_2                           40                            18
  CLUS_3                           58                            24
  CLUS_4                           25                             9
  CLUS_5                           57                            18
  CLUS_6                           29                             5
  CLUS_7                           31                             5
  CLUS_8                           38                            14
  CLUS_9                           32                            10
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       92    180    147
  DEL PEAK 11(5Q13.2) WILD-TYPE     79     26     55
D44V5, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          92                            79
  CLUS_2                         180                            26
  CLUS_3                         147                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED      129    116    166
  DEL PEAK 11(5Q13.2) WILD-TYPE     43     59     55
D44V6, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                         129                            43
  CLUS_2                         116                            59
  CLUS_3                         166                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       83    142     60
  DEL PEAK 11(5Q13.2) WILD-TYPE     37     54     22
D44V7, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          83                            37
  CLUS_2                         142                            54
  CLUS_3                          60                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED       82     70     89     44
  DEL PEAK 11(5Q13.2) WILD-TYPE     34     26     39     14
D44V8, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          82                            34
  CLUS_2                          70                            26
  CLUS_3                          89                            39
  CLUS_4                          44                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       76     46     64
  DEL PEAK 11(5Q13.2) WILD-TYPE     24     21     27
D44V9, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          76                            24
  CLUS_2                          46                            21
  CLUS_3                          64                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       83     76     27
  DEL PEAK 11(5Q13.2) WILD-TYPE     23     40      9
D44V10, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          83                            23
  CLUS_2                          76                            40
  CLUS_3                          27                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       95    135     98
  DEL PEAK 11(5Q13.2) WILD-TYPE     26     47     46
D44V11, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          95                            26
  CLUS_2                         135                            47
  CLUS_3                          98                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q13.2) MUTATED       86     50    120     72
  DEL PEAK 11(5Q13.2) WILD-TYPE     19     21     45     34
D44V12, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          86                            19
  CLUS_2                          50                            21
  CLUS_3                         120                            45
  CLUS_4                          72                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V13, binary
                               cls
clus                             0  1
  DEL PEAK 11(5Q13.2) MUTATED   10  8
  DEL PEAK 11(5Q13.2) WILD-TYPE  2  2
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q13.2) MUTATED     10    8
  DEL PEAK 11(5Q13.2) WILD-TYPE    2    2
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          10                             2
  CLUS_2                           8                             2
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q13.2) MUTATED        5      2      1      4      4      2
  DEL PEAK 11(5Q13.2) WILD-TYPE      1      0      1      2      0      0
D44V14, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           5                             1
  CLUS_2                           2                             0
  CLUS_3                           1                             1
  CLUS_4                           4                             2
  CLUS_5                           4                             0
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 12(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      133    147     86
  DEL PEAK 12(6Q27) WILD-TYPE     82     69     40
D45V1, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       133                          82
  CLUS_2                       147                          69
  CLUS_3                        86                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      198    115     53
  DEL PEAK 12(6Q27) WILD-TYPE    112     43     36
D45V2, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       198                         112
  CLUS_2                       115                          43
  CLUS_3                        53                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      109    113    144
  DEL PEAK 12(6Q27) WILD-TYPE     50     51     88
D45V3, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       109                          50
  CLUS_2                       113                          51
  CLUS_3                       144                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED       60      39     41     52     21     57     21
  DEL PEAK 12(6Q27) WILD-TYPE     25      18     17     30     13     18     13
                             vv
clus                          CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 12(6Q27) MUTATED       23     24     28
  DEL PEAK 12(6Q27) WILD-TYPE     13     28     14
D45V4, multiclass
         clus
vv        DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         60                          25
  CLUS_10                        39                          18
  CLUS_2                         41                          17
  CLUS_3                         52                          30
  CLUS_4                         21                          13
  CLUS_5                         57                          18
  CLUS_6                         21                          13
  CLUS_7                         23                          13
  CLUS_8                         24                          28
  CLUS_9                         28                          14
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      121    162     97
  DEL PEAK 12(6Q27) WILD-TYPE     50     44    105
D45V5, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       121                          50
  CLUS_2                       162                          44
  CLUS_3                        97                         105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       91    132    152
  DEL PEAK 12(6Q27) WILD-TYPE     81     43     69
D45V6, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        91                          81
  CLUS_2                       132                          43
  CLUS_3                       152                          69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       76    125     57
  DEL PEAK 12(6Q27) WILD-TYPE     44     71     25
D45V7, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        76                          44
  CLUS_2                       125                          71
  CLUS_3                        57                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       81     60     79     38
  DEL PEAK 12(6Q27) WILD-TYPE     35     36     49     20
D45V8, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        81                          35
  CLUS_2                        60                          36
  CLUS_3                        79                          49
  CLUS_4                        38                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       66     52     38
  DEL PEAK 12(6Q27) WILD-TYPE     34     15     53
D45V9, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        66                          34
  CLUS_2                        52                          15
  CLUS_3                        38                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       71     73     12
  DEL PEAK 12(6Q27) WILD-TYPE     35     43     24
D45V10, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        71                          35
  CLUS_2                        73                          43
  CLUS_3                        12                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       74    122     94
  DEL PEAK 12(6Q27) WILD-TYPE     47     60     50
D45V11, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        74                          47
  CLUS_2                       122                          60
  CLUS_3                        94                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q27) MUTATED       79     43     96     72
  DEL PEAK 12(6Q27) WILD-TYPE     26     28     69     34
D45V12, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        79                          26
  CLUS_2                        43                          28
  CLUS_3                        96                          69
  CLUS_4                        72                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V13, binary
                             cls
clus                          0 1
  DEL PEAK 12(6Q27) MUTATED   6 4
  DEL PEAK 12(6Q27) WILD-TYPE 6 6
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(6Q27) MUTATED      6    4
  DEL PEAK 12(6Q27) WILD-TYPE    6    6
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         6                           6
  CLUS_2                         4                           6
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED        4      0      2      2      1      1
  DEL PEAK 12(6Q27) WILD-TYPE      2      2      0      4      3      1
D45V14, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         4                           2
  CLUS_2                         0                           2
  CLUS_3                         2                           0
  CLUS_4                         2                           4
  CLUS_5                         1                           3
  CLUS_6                         1                           1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 13(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       88    102     53
  DEL PEAK 13(7P22.1) WILD-TYPE    127    114     73
D46V1, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          88                           127
  CLUS_2                         102                           114
  CLUS_3                          53                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED      134     74     35
  DEL PEAK 13(7P22.1) WILD-TYPE    176     84     54
D46V2, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                         134                           176
  CLUS_2                          74                            84
  CLUS_3                          35                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       73     72     98
  DEL PEAK 13(7P22.1) WILD-TYPE     86     92    134
D46V3, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          73                            86
  CLUS_2                          72                            92
  CLUS_3                          98                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.1) MUTATED       36      30     24     36     15     28
  DEL PEAK 13(7P22.1) WILD-TYPE     49      27     34     46     19     47
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 13(7P22.1) MUTATED       10     19     18     27
  DEL PEAK 13(7P22.1) WILD-TYPE     24     17     34     15
D46V4, multiclass
         clus
vv        DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                           36                            49
  CLUS_10                          30                            27
  CLUS_2                           24                            34
  CLUS_3                           36                            46
  CLUS_4                           15                            19
  CLUS_5                           28                            47
  CLUS_6                           10                            24
  CLUS_7                           19                            17
  CLUS_8                           18                            34
  CLUS_9                           27                            15
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       48    135     70
  DEL PEAK 13(7P22.1) WILD-TYPE    123     71    132
D46V5, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          48                           123
  CLUS_2                         135                            71
  CLUS_3                          70                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       71     81     95
  DEL PEAK 13(7P22.1) WILD-TYPE    101     94    126
D46V6, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          71                           101
  CLUS_2                          81                            94
  CLUS_3                          95                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       51     90     35
  DEL PEAK 13(7P22.1) WILD-TYPE     69    106     47
D46V7, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          51                            69
  CLUS_2                          90                           106
  CLUS_3                          35                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.1) MUTATED       57     39     54     26
  DEL PEAK 13(7P22.1) WILD-TYPE     59     57     74     32
D46V8, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          57                            59
  CLUS_2                          39                            57
  CLUS_3                          54                            74
  CLUS_4                          26                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       54     31     40
  DEL PEAK 13(7P22.1) WILD-TYPE     46     36     51
D46V9, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          54                            46
  CLUS_2                          31                            36
  CLUS_3                          40                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       59     52     14
  DEL PEAK 13(7P22.1) WILD-TYPE     47     64     22
D46V10, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          59                            47
  CLUS_2                          52                            64
  CLUS_3                          14                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.1) MUTATED       62     79     63
  DEL PEAK 13(7P22.1) WILD-TYPE     59    103     81
D46V11, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          62                            59
  CLUS_2                          79                           103
  CLUS_3                          63                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.1) MUTATED       50     31     77     46
  DEL PEAK 13(7P22.1) WILD-TYPE     55     40     88     60
D46V12, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                          50                            55
  CLUS_2                          31                            40
  CLUS_3                          77                            88
  CLUS_4                          46                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V13, binary
                               cls
clus                            0 1
  DEL PEAK 13(7P22.1) MUTATED   7 3
  DEL PEAK 13(7P22.1) WILD-TYPE 5 7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(7P22.1) MUTATED      7    3
  DEL PEAK 13(7P22.1) WILD-TYPE    5    7
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                           7                             5
  CLUS_2                           3                             7
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.1) MUTATED        3      1      1      2      1      2
  DEL PEAK 13(7P22.1) WILD-TYPE      3      1      1      4      3      0
D46V14, multiclass
        clus
vv       DEL PEAK 13(7P22.1) MUTATED DEL PEAK 13(7P22.1) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           1                             1
  CLUS_3                           1                             1
  CLUS_4                           2                             4
  CLUS_5                           1                             3
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      132    157     85
  DEL PEAK 14(8P23.3) WILD-TYPE     83     59     41
D47V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         132                            83
  CLUS_2                         157                            59
  CLUS_3                          85                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      211    111     52
  DEL PEAK 14(8P23.3) WILD-TYPE     99     47     37
D47V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         211                            99
  CLUS_2                         111                            47
  CLUS_3                          52                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      111    113    151
  DEL PEAK 14(8P23.3) WILD-TYPE     48     51     81
D47V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         111                            48
  CLUS_2                         113                            51
  CLUS_3                         151                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       57      36     34     61     30     53
  DEL PEAK 14(8P23.3) WILD-TYPE     28      21     24     21      4     22
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 14(8P23.3) MUTATED       15     27     33     29
  DEL PEAK 14(8P23.3) WILD-TYPE     19      9     19     13
D47V4, multiclass
         clus
vv        DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                           57                            28
  CLUS_10                          36                            21
  CLUS_2                           34                            24
  CLUS_3                           61                            21
  CLUS_4                           30                             4
  CLUS_5                           53                            22
  CLUS_6                           15                            19
  CLUS_7                           27                             9
  CLUS_8                           33                            19
  CLUS_9                           29                            13
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       78    162    148
  DEL PEAK 14(8P23.3) WILD-TYPE     93     44     54
D47V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          78                            93
  CLUS_2                         162                            44
  CLUS_3                         148                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED      112    108    161
  DEL PEAK 14(8P23.3) WILD-TYPE     60     67     60
D47V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                         112                            60
  CLUS_2                         108                            67
  CLUS_3                         161                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       82    135     54
  DEL PEAK 14(8P23.3) WILD-TYPE     38     61     28
D47V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          82                            38
  CLUS_2                         135                            61
  CLUS_3                          54                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       76     62     94     39
  DEL PEAK 14(8P23.3) WILD-TYPE     40     34     34     19
D47V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          76                            40
  CLUS_2                          62                            34
  CLUS_3                          94                            34
  CLUS_4                          39                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       73     47     64
  DEL PEAK 14(8P23.3) WILD-TYPE     27     20     27
D47V9, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          73                            27
  CLUS_2                          47                            20
  CLUS_3                          64                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       77     82     25
  DEL PEAK 14(8P23.3) WILD-TYPE     29     34     11
D47V10, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          77                            29
  CLUS_2                          82                            34
  CLUS_3                          25                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       89    123     92
  DEL PEAK 14(8P23.3) WILD-TYPE     32     59     52
D47V11, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          89                            32
  CLUS_2                         123                            59
  CLUS_3                          92                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       72     49    119     64
  DEL PEAK 14(8P23.3) WILD-TYPE     33     22     46     42
D47V12, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          72                            33
  CLUS_2                          49                            22
  CLUS_3                         119                            46
  CLUS_4                          64                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V13, binary
                               cls
clus                             0  1
  DEL PEAK 14(8P23.3) MUTATED   11  9
  DEL PEAK 14(8P23.3) WILD-TYPE  1  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(8P23.3) MUTATED     11    9
  DEL PEAK 14(8P23.3) WILD-TYPE    1    1
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          11                             1
  CLUS_2                           9                             1
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED        5      2      2      5      4      2
  DEL PEAK 14(8P23.3) WILD-TYPE      1      0      0      1      0      0
D47V14, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 14(8P23.3) WILD-TYPE"
clus
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           20                             2 
                 TCGA-04-1652                  TCGA-09-2050 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-09-2054                  TCGA-13-0908 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-23-2077                  TCGA-24-1928 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-61-1918                  TCGA-61-2088 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 
                 TCGA-61-2098                  TCGA-61-2111 
"DEL PEAK 14(8P23.3) MUTATED" "DEL PEAK 14(8P23.3) MUTATED" 

Clustering(48) Variable = DEL PEAK 15(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      138    160     94
  DEL PEAK 15(8P21.2) WILD-TYPE     77     56     32
D48V1, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         138                            77
  CLUS_2                         160                            56
  CLUS_3                          94                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      216    120     56
  DEL PEAK 15(8P21.2) WILD-TYPE     94     38     33
D48V2, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         216                            94
  CLUS_2                         120                            38
  CLUS_3                          56                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      120    117    155
  DEL PEAK 15(8P21.2) WILD-TYPE     39     47     77
D48V3, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         120                            39
  CLUS_2                         117                            47
  CLUS_3                         155                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P21.2) MUTATED       66      35     39     56     30     51
  DEL PEAK 15(8P21.2) WILD-TYPE     19      22     19     26      4     24
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 15(8P21.2) MUTATED       16     30     36     33
  DEL PEAK 15(8P21.2) WILD-TYPE     18      6     16      9
D48V4, multiclass
         clus
vv        DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                           66                            19
  CLUS_10                          35                            22
  CLUS_2                           39                            19
  CLUS_3                           56                            26
  CLUS_4                           30                             4
  CLUS_5                           51                            24
  CLUS_6                           16                            18
  CLUS_7                           30                             6
  CLUS_8                           36                            16
  CLUS_9                           33                             9
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED       88    166    152
  DEL PEAK 15(8P21.2) WILD-TYPE     83     40     50
D48V5, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          88                            83
  CLUS_2                         166                            40
  CLUS_3                         152                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED      116    118    166
  DEL PEAK 15(8P21.2) WILD-TYPE     56     57     55
D48V6, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                         116                            56
  CLUS_2                         118                            57
  CLUS_3                         166                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED       84    142     58
  DEL PEAK 15(8P21.2) WILD-TYPE     36     54     24
D48V7, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          84                            36
  CLUS_2                         142                            54
  CLUS_3                          58                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED       82     69     92     41
  DEL PEAK 15(8P21.2) WILD-TYPE     34     27     36     17
D48V8, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          82                            34
  CLUS_2                          69                            27
  CLUS_3                          92                            36
  CLUS_4                          41                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED       79     52     65
  DEL PEAK 15(8P21.2) WILD-TYPE     21     15     26
D48V9, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          79                            21
  CLUS_2                          52                            15
  CLUS_3                          65                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED       83     87     26
  DEL PEAK 15(8P21.2) WILD-TYPE     23     29     10
D48V10, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          83                            23
  CLUS_2                          87                            29
  CLUS_3                          26                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.2) MUTATED       90    127     99
  DEL PEAK 15(8P21.2) WILD-TYPE     31     55     45
D48V11, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          90                            31
  CLUS_2                         127                            55
  CLUS_3                          99                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P21.2) MUTATED       70     53    121     72
  DEL PEAK 15(8P21.2) WILD-TYPE     35     18     44     34
D48V12, multiclass
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          70                            35
  CLUS_2                          53                            18
  CLUS_3                         121                            44
  CLUS_4                          72                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V13, binary
                               cls
clus                             0  1
  DEL PEAK 15(8P21.2) MUTATED   11  9
  DEL PEAK 15(8P21.2) WILD-TYPE  1  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P21.2) MUTATED     11    9
  DEL PEAK 15(8P21.2) WILD-TYPE    1    1
        clus
vv       DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE
  CLUS_1                          11                             1
  CLUS_2                           9                             1
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P21.2) MUTATED        5      2      2      5      4      2
  DEL PEAK 15(8P21.2) WILD-TYPE      1      0      0      1      0      0
D48V14, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 15(8P21.2) WILD-TYPE"
clus
  DEL PEAK 15(8P21.2) MUTATED DEL PEAK 15(8P21.2) WILD-TYPE 
                           20                             2 
                 TCGA-04-1652                  TCGA-09-2050 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-09-2054                  TCGA-13-0908 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-23-2077                  TCGA-24-1928 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-24-2288                  TCGA-24-2289 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-24-2290                  TCGA-24-2297 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-25-2392                  TCGA-25-2399 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-25-2400                  TCGA-25-2404 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-57-1994                  TCGA-59-2363 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-61-1918                  TCGA-61-2098 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 
                 TCGA-61-2109                  TCGA-61-2111 
"DEL PEAK 15(8P21.2) MUTATED" "DEL PEAK 15(8P21.2) MUTATED" 

Clustering(49) Variable = DEL PEAK 16(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED      109     73     66
  DEL PEAK 16(9P24.3) WILD-TYPE    106    143     60
D49V1, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                         109                           106
  CLUS_2                          73                           143
  CLUS_3                          66                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED      120     69     59
  DEL PEAK 16(9P24.3) WILD-TYPE    190     89     30
D49V2, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                         120                           190
  CLUS_2                          69                            89
  CLUS_3                          59                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       68     78    100
  DEL PEAK 16(9P24.3) WILD-TYPE     91     86    132
D49V3, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          68                            91
  CLUS_2                          78                            86
  CLUS_3                         100                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P24.3) MUTATED       34      21     28     30     18     27
  DEL PEAK 16(9P24.3) WILD-TYPE     51      36     30     52     16     48
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 16(9P24.3) MUTATED       16     16     36     20
  DEL PEAK 16(9P24.3) WILD-TYPE     18     20     16     22
D49V4, multiclass
         clus
vv        DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                           34                            51
  CLUS_10                          21                            36
  CLUS_2                           28                            30
  CLUS_3                           30                            52
  CLUS_4                           18                            16
  CLUS_5                           27                            48
  CLUS_6                           16                            18
  CLUS_7                           16                            20
  CLUS_8                           36                            16
  CLUS_9                           20                            22
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       77     81    103
  DEL PEAK 16(9P24.3) WILD-TYPE     94    125     99
D49V5, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          77                            94
  CLUS_2                          81                           125
  CLUS_3                         103                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       92     90     75
  DEL PEAK 16(9P24.3) WILD-TYPE     80     85    146
D49V6, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          92                            80
  CLUS_2                          90                            85
  CLUS_3                          75                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       54     76     39
  DEL PEAK 16(9P24.3) WILD-TYPE     66    120     43
D49V7, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          54                            66
  CLUS_2                          76                           120
  CLUS_3                          39                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       51     40     55     23
  DEL PEAK 16(9P24.3) WILD-TYPE     65     56     73     35
D49V8, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          51                            65
  CLUS_2                          40                            56
  CLUS_3                          55                            73
  CLUS_4                          23                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       39     26     49
  DEL PEAK 16(9P24.3) WILD-TYPE     61     41     42
D49V9, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          39                            61
  CLUS_2                          26                            41
  CLUS_3                          49                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       40     52     22
  DEL PEAK 16(9P24.3) WILD-TYPE     66     64     14
D49V10, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          40                            66
  CLUS_2                          52                            64
  CLUS_3                          22                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P24.3) MUTATED       53     70     73
  DEL PEAK 16(9P24.3) WILD-TYPE     68    112     71
D49V11, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          53                            68
  CLUS_2                          70                           112
  CLUS_3                          73                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P24.3) MUTATED       37     36     71     52
  DEL PEAK 16(9P24.3) WILD-TYPE     68     35     94     54
D49V12, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                          37                            68
  CLUS_2                          36                            35
  CLUS_3                          71                            94
  CLUS_4                          52                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V13, binary
                               cls
clus                            0 1
  DEL PEAK 16(9P24.3) MUTATED   8 6
  DEL PEAK 16(9P24.3) WILD-TYPE 4 4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(9P24.3) MUTATED      8    6
  DEL PEAK 16(9P24.3) WILD-TYPE    4    4
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                           8                             4
  CLUS_2                           6                             4
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P24.3) MUTATED        4      1      2      5      1      1
  DEL PEAK 16(9P24.3) WILD-TYPE      2      1      0      1      3      1
D49V14, multiclass
        clus
vv       DEL PEAK 16(9P24.3) MUTATED DEL PEAK 16(9P24.3) WILD-TYPE
  CLUS_1                           4                             2
  CLUS_2                           1                             1
  CLUS_3                           2                             0
  CLUS_4                           5                             1
  CLUS_5                           1                             3
  CLUS_6                           1                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 17(9Q34.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED      143    121     66
  DEL PEAK 17(9Q34.13) WILD-TYPE     72     95     60
D50V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          143                             72
  CLUS_2                          121                             95
  CLUS_3                           66                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED      185     79     66
  DEL PEAK 17(9Q34.13) WILD-TYPE    125     79     23
D50V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          185                            125
  CLUS_2                           79                             79
  CLUS_3                           66                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       90     98    141
  DEL PEAK 17(9Q34.13) WILD-TYPE     69     66     91
D50V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           90                             69
  CLUS_2                           98                             66
  CLUS_3                          141                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.13) MUTATED       45      36     40     44     19     43
  DEL PEAK 17(9Q34.13) WILD-TYPE     40      21     18     38     15     32
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 17(9Q34.13) MUTATED       23     21     36     22
  DEL PEAK 17(9Q34.13) WILD-TYPE     11     15     16     20
D50V4, multiclass
         clus
vv        DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            45                             40
  CLUS_10                           36                             21
  CLUS_2                            40                             18
  CLUS_3                            44                             38
  CLUS_4                            19                             15
  CLUS_5                            43                             32
  CLUS_6                            23                             11
  CLUS_7                            21                             15
  CLUS_8                            36                             16
  CLUS_9                            22                             20
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       93     98    151
  DEL PEAK 17(9Q34.13) WILD-TYPE     78    108     51
D50V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           93                             78
  CLUS_2                           98                            108
  CLUS_3                          151                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED      115     91    132
  DEL PEAK 17(9Q34.13) WILD-TYPE     57     84     89
D50V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          115                             57
  CLUS_2                           91                             84
  CLUS_3                          132                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       65    116     46
  DEL PEAK 17(9Q34.13) WILD-TYPE     55     80     36
D50V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           65                             55
  CLUS_2                          116                             80
  CLUS_3                           46                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED       62     60     78     27
  DEL PEAK 17(9Q34.13) WILD-TYPE     54     36     50     31
D50V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           62                             54
  CLUS_2                           60                             36
  CLUS_3                           78                             50
  CLUS_4                           27                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       58     36     64
  DEL PEAK 17(9Q34.13) WILD-TYPE     42     31     27
D50V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           58                             42
  CLUS_2                           36                             31
  CLUS_3                           64                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       63     67     28
  DEL PEAK 17(9Q34.13) WILD-TYPE     43     49      8
D50V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           63                             43
  CLUS_2                           67                             49
  CLUS_3                           28                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.13) MUTATED       65    107     98
  DEL PEAK 17(9Q34.13) WILD-TYPE     56     75     46
D50V11, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           65                             56
  CLUS_2                          107                             75
  CLUS_3                           98                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.13) MUTATED       56     51     98     65
  DEL PEAK 17(9Q34.13) WILD-TYPE     49     20     67     41
D50V12, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           56                             49
  CLUS_2                           51                             20
  CLUS_3                           98                             67
  CLUS_4                           65                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V13, binary
                                cls
clus                             0 1
  DEL PEAK 17(9Q34.13) MUTATED   7 6
  DEL PEAK 17(9Q34.13) WILD-TYPE 5 4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(9Q34.13) MUTATED      7    6
  DEL PEAK 17(9Q34.13) WILD-TYPE    5    4
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            6                              4
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.13) MUTATED        3      2      1      3      2      2
  DEL PEAK 17(9Q34.13) WILD-TYPE      3      0      1      3      2      0
D50V14, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            2                              0
  CLUS_3                            1                              1
  CLUS_4                            3                              3
  CLUS_5                            2                              2
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       54     40     23
  DEL PEAK 18(10P15.3) WILD-TYPE    161    176    103
D51V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           54                            161
  CLUS_2                           40                            176
  CLUS_3                           23                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       69     30     18
  DEL PEAK 18(10P15.3) WILD-TYPE    241    128     71
D51V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           69                            241
  CLUS_2                           30                            128
  CLUS_3                           18                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       28     44     44
  DEL PEAK 18(10P15.3) WILD-TYPE    131    120    188
D51V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                            131
  CLUS_2                           44                            120
  CLUS_3                           44                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       15      17     15     11      4     18
  DEL PEAK 18(10P15.3) WILD-TYPE     70      40     43     71     30     57
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 18(10P15.3) MUTATED        6      9     13      8
  DEL PEAK 18(10P15.3) WILD-TYPE     28     27     39     34
D51V4, multiclass
         clus
vv        DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            15                             70
  CLUS_10                           17                             40
  CLUS_2                            15                             43
  CLUS_3                            11                             71
  CLUS_4                             4                             30
  CLUS_5                            18                             57
  CLUS_6                             6                             28
  CLUS_7                             9                             27
  CLUS_8                            13                             39
  CLUS_9                             8                             34
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       39     49     32
  DEL PEAK 18(10P15.3) WILD-TYPE    132    157    170
D51V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           39                            132
  CLUS_2                           49                            157
  CLUS_3                           32                            170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       36     43     41
  DEL PEAK 18(10P15.3) WILD-TYPE    136    132    180
D51V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           36                            136
  CLUS_2                           43                            132
  CLUS_3                           41                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       21     41     22
  DEL PEAK 18(10P15.3) WILD-TYPE     99    155     60
D51V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             99
  CLUS_2                           41                            155
  CLUS_3                           22                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       23     21     20     20
  DEL PEAK 18(10P15.3) WILD-TYPE     93     75    108     38
D51V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           23                             93
  CLUS_2                           21                             75
  CLUS_3                           20                            108
  CLUS_4                           20                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       12     20     20
  DEL PEAK 18(10P15.3) WILD-TYPE     88     47     71
D51V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           12                             88
  CLUS_2                           20                             47
  CLUS_3                           20                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       15     30      7
  DEL PEAK 18(10P15.3) WILD-TYPE     91     86     29
D51V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           15                             91
  CLUS_2                           30                             86
  CLUS_3                            7                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       21     32     35
  DEL PEAK 18(10P15.3) WILD-TYPE    100    150    109
D51V11, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                            100
  CLUS_2                           32                            150
  CLUS_3                           35                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       20     12     28     28
  DEL PEAK 18(10P15.3) WILD-TYPE     85     59    137     78
D51V12, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             85
  CLUS_2                           12                             59
  CLUS_3                           28                            137
  CLUS_4                           28                             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V13, binary
                                cls
clus                             0 1
  DEL PEAK 18(10P15.3) MUTATED   3 1
  DEL PEAK 18(10P15.3) WILD-TYPE 9 9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10P15.3) MUTATED      3    1
  DEL PEAK 18(10P15.3) WILD-TYPE    9    9
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            3                              9
  CLUS_2                            1                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED        1      0      2      1      0      0
  DEL PEAK 18(10P15.3) WILD-TYPE      5      2      0      5      4      2
D51V14, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            1                              5
  CLUS_2                            0                              2
  CLUS_3                            2                              0
  CLUS_4                            1                              5
  CLUS_5                            0                              4
  CLUS_6                            0                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 19(10Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       87    112     43
  DEL PEAK 19(10Q24.2) WILD-TYPE    128    104     83
D52V1, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           87                            128
  CLUS_2                          112                            104
  CLUS_3                           43                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED      152     64     26
  DEL PEAK 19(10Q24.2) WILD-TYPE    158     94     63
D52V2, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                          152                            158
  CLUS_2                           64                             94
  CLUS_3                           26                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       70     56    116
  DEL PEAK 19(10Q24.2) WILD-TYPE     89    108    116
D52V3, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           70                             89
  CLUS_2                           56                            108
  CLUS_3                          116                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q24.2) MUTATED       31      23     24     45     18     31
  DEL PEAK 19(10Q24.2) WILD-TYPE     54      34     34     37     16     44
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 19(10Q24.2) MUTATED       16     19     17     18
  DEL PEAK 19(10Q24.2) WILD-TYPE     18     17     35     24
D52V4, multiclass
         clus
vv        DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                            31                             54
  CLUS_10                           23                             34
  CLUS_2                            24                             34
  CLUS_3                            45                             37
  CLUS_4                            18                             16
  CLUS_5                            31                             44
  CLUS_6                            16                             18
  CLUS_7                            19                             17
  CLUS_8                            17                             35
  CLUS_9                            18                             24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       53    111     87
  DEL PEAK 19(10Q24.2) WILD-TYPE    118     95    115
D52V5, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           53                            118
  CLUS_2                          111                             95
  CLUS_3                           87                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       79     58    111
  DEL PEAK 19(10Q24.2) WILD-TYPE     93    117    110
D52V6, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           79                             93
  CLUS_2                           58                            117
  CLUS_3                          111                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       41     94     43
  DEL PEAK 19(10Q24.2) WILD-TYPE     79    102     39
D52V7, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           41                             79
  CLUS_2                           94                            102
  CLUS_3                           43                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q24.2) MUTATED       42     45     53     38
  DEL PEAK 19(10Q24.2) WILD-TYPE     74     51     75     20
D52V8, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           42                             74
  CLUS_2                           45                             51
  CLUS_3                           53                             75
  CLUS_4                           38                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       52     33     40
  DEL PEAK 19(10Q24.2) WILD-TYPE     48     34     51
D52V9, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           52                             48
  CLUS_2                           33                             34
  CLUS_3                           40                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       57     52     16
  DEL PEAK 19(10Q24.2) WILD-TYPE     49     64     20
D52V10, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           57                             49
  CLUS_2                           52                             64
  CLUS_3                           16                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q24.2) MUTATED       48    102     55
  DEL PEAK 19(10Q24.2) WILD-TYPE     73     80     89
D52V11, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           48                             73
  CLUS_2                          102                             80
  CLUS_3                           55                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q24.2) MUTATED       52     29     81     43
  DEL PEAK 19(10Q24.2) WILD-TYPE     53     42     84     63
D52V12, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                           52                             53
  CLUS_2                           29                             42
  CLUS_3                           81                             84
  CLUS_4                           43                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V13, binary
                                cls
clus                             0 1
  DEL PEAK 19(10Q24.2) MUTATED   7 5
  DEL PEAK 19(10Q24.2) WILD-TYPE 5 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(10Q24.2) MUTATED      7    5
  DEL PEAK 19(10Q24.2) WILD-TYPE    5    5
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            5                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q24.2) MUTATED        3      0      1      4      3      1
  DEL PEAK 19(10Q24.2) WILD-TYPE      3      2      1      2      1      1
D52V14, multiclass
        clus
vv       DEL PEAK 19(10Q24.2) MUTATED DEL PEAK 19(10Q24.2) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            4                              2
  CLUS_5                            3                              1
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 20(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED      121    141     71
  DEL PEAK 20(11P15.5) WILD-TYPE     94     75     55
D53V1, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                          121                             94
  CLUS_2                          141                             75
  CLUS_3                           71                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED      184     96     53
  DEL PEAK 20(11P15.5) WILD-TYPE    126     62     36
D53V2, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                          184                            126
  CLUS_2                           96                             62
  CLUS_3                           53                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       96    103    134
  DEL PEAK 20(11P15.5) WILD-TYPE     63     61     98
D53V3, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           96                             63
  CLUS_2                          103                             61
  CLUS_3                          134                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.5) MUTATED       48      35     29     51     20     41
  DEL PEAK 20(11P15.5) WILD-TYPE     37      22     29     31     14     34
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 20(11P15.5) MUTATED       17     27     32     33
  DEL PEAK 20(11P15.5) WILD-TYPE     17      9     20      9
D53V4, multiclass
         clus
vv        DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                            48                             37
  CLUS_10                           35                             22
  CLUS_2                            29                             29
  CLUS_3                            51                             31
  CLUS_4                            20                             14
  CLUS_5                            41                             34
  CLUS_6                            17                             17
  CLUS_7                            27                              9
  CLUS_8                            32                             20
  CLUS_9                            33                              9
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       77    163    106
  DEL PEAK 20(11P15.5) WILD-TYPE     94     43     96
D53V5, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           77                             94
  CLUS_2                          163                             43
  CLUS_3                          106                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       89    100    148
  DEL PEAK 20(11P15.5) WILD-TYPE     83     75     73
D53V6, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           89                             83
  CLUS_2                          100                             75
  CLUS_3                          148                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       71    112     48
  DEL PEAK 20(11P15.5) WILD-TYPE     49     84     34
D53V7, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           71                             49
  CLUS_2                          112                             84
  CLUS_3                           48                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       67     52     75     37
  DEL PEAK 20(11P15.5) WILD-TYPE     49     44     53     21
D53V8, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           67                             49
  CLUS_2                           52                             44
  CLUS_3                           75                             53
  CLUS_4                           37                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       60     36     51
  DEL PEAK 20(11P15.5) WILD-TYPE     40     31     40
D53V9, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           60                             40
  CLUS_2                           36                             31
  CLUS_3                           51                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       65     63     19
  DEL PEAK 20(11P15.5) WILD-TYPE     41     53     17
D53V10, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           65                             41
  CLUS_2                           63                             53
  CLUS_3                           19                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       65    117     79
  DEL PEAK 20(11P15.5) WILD-TYPE     56     65     65
D53V11, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           65                             56
  CLUS_2                          117                             65
  CLUS_3                           79                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       76     38     91     56
  DEL PEAK 20(11P15.5) WILD-TYPE     29     33     74     50
D53V12, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           76                             29
  CLUS_2                           38                             33
  CLUS_3                           91                             74
  CLUS_4                           56                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V13, binary
                                cls
clus                             0 1
  DEL PEAK 20(11P15.5) MUTATED   6 2
  DEL PEAK 20(11P15.5) WILD-TYPE 6 8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11P15.5) MUTATED      6    2
  DEL PEAK 20(11P15.5) WILD-TYPE    6    8
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            2                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(11P15.5) MUTATED        3      0      1      2      1      1
  DEL PEAK 20(11P15.5) WILD-TYPE      3      2      1      4      3      1
D53V14, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                            3                              3
  CLUS_2                            0                              2
  CLUS_3                            1                              1
  CLUS_4                            2                              4
  CLUS_5                            1                              3
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 21(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       78     70     46
  DEL PEAK 21(11Q25) WILD-TYPE    137    146     80
D54V1, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         78                          137
  CLUS_2                         70                          146
  CLUS_3                         46                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED      113     53     28
  DEL PEAK 21(11Q25) WILD-TYPE    197    105     61
D54V2, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                        113                          197
  CLUS_2                         53                          105
  CLUS_3                         28                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       64     54     74
  DEL PEAK 21(11Q25) WILD-TYPE     95    110    158
D54V3, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         64                           95
  CLUS_2                         54                          110
  CLUS_3                         74                          158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q25) MUTATED       36      20     15     21     12     24
  DEL PEAK 21(11Q25) WILD-TYPE     49      37     43     61     22     51
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 21(11Q25) MUTATED        8     20     21     15
  DEL PEAK 21(11Q25) WILD-TYPE     26     16     31     27
D54V4, multiclass
         clus
vv        DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                          36                           49
  CLUS_10                         20                           37
  CLUS_2                          15                           43
  CLUS_3                          21                           61
  CLUS_4                          12                           22
  CLUS_5                          24                           51
  CLUS_6                           8                           26
  CLUS_7                          20                           16
  CLUS_8                          21                           31
  CLUS_9                          15                           27
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       56     66     79
  DEL PEAK 21(11Q25) WILD-TYPE    115    140    123
D54V5, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         56                          115
  CLUS_2                         66                          140
  CLUS_3                         79                          123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       66     56     74
  DEL PEAK 21(11Q25) WILD-TYPE    106    119    147
D54V6, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         66                          106
  CLUS_2                         56                          119
  CLUS_3                         74                          147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       41     71     22
  DEL PEAK 21(11Q25) WILD-TYPE     79    125     60
D54V7, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         41                           79
  CLUS_2                         71                          125
  CLUS_3                         22                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q25) MUTATED       45     25     44     20
  DEL PEAK 21(11Q25) WILD-TYPE     71     71     84     38
D54V8, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         45                           71
  CLUS_2                         25                           71
  CLUS_3                         44                           84
  CLUS_4                         20                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       36     22     32
  DEL PEAK 21(11Q25) WILD-TYPE     64     45     59
D54V9, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         36                           64
  CLUS_2                         22                           45
  CLUS_3                         32                           59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       39     36     15
  DEL PEAK 21(11Q25) WILD-TYPE     67     80     21
D54V10, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         39                           67
  CLUS_2                         36                           80
  CLUS_3                         15                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q25) MUTATED       46     61     49
  DEL PEAK 21(11Q25) WILD-TYPE     75    121     95
D54V11, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         46                           75
  CLUS_2                         61                          121
  CLUS_3                         49                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q25) MUTATED       37     26     64     29
  DEL PEAK 21(11Q25) WILD-TYPE     68     45    101     77
D54V12, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                         37                           68
  CLUS_2                         26                           45
  CLUS_3                         64                          101
  CLUS_4                         29                           77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V13, binary
                              cls
clus                           0 1
  DEL PEAK 21(11Q25) MUTATED   4 3
  DEL PEAK 21(11Q25) WILD-TYPE 8 7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 21(11Q25) MUTATED      4    3
  DEL PEAK 21(11Q25) WILD-TYPE    8    7
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                          4                            8
  CLUS_2                          3                            7
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11Q25) MUTATED        1      1      0      2      2      1
  DEL PEAK 21(11Q25) WILD-TYPE      5      1      2      4      2      1
D54V14, multiclass
        clus
vv       DEL PEAK 21(11Q25) MUTATED DEL PEAK 21(11Q25) WILD-TYPE
  CLUS_1                          1                            5
  CLUS_2                          1                            1
  CLUS_3                          0                            2
  CLUS_4                          2                            4
  CLUS_5                          2                            2
  CLUS_6                          1                            1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 22(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       62     99     51
  DEL PEAK 22(12Q24.33) WILD-TYPE    153    117     75
D55V1, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            62                             153
  CLUS_2                            99                             117
  CLUS_3                            51                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED      118     68     26
  DEL PEAK 22(12Q24.33) WILD-TYPE    192     90     63
D55V2, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                           118                             192
  CLUS_2                            68                              90
  CLUS_3                            26                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       67     67     78
  DEL PEAK 22(12Q24.33) WILD-TYPE     92     97    154
D55V3, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            67                              92
  CLUS_2                            67                              97
  CLUS_3                            78                             154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q24.33) MUTATED       34      21     19     35     11     34
  DEL PEAK 22(12Q24.33) WILD-TYPE     51      36     39     47     23     41
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 22(12Q24.33) MUTATED        7     19     11     21
  DEL PEAK 22(12Q24.33) WILD-TYPE     27     17     41     21
D55V4, multiclass
         clus
vv        DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                             34                              51
  CLUS_10                            21                              36
  CLUS_2                             19                              39
  CLUS_3                             35                              47
  CLUS_4                             11                              23
  CLUS_5                             34                              41
  CLUS_6                              7                              27
  CLUS_7                             19                              17
  CLUS_8                             11                              41
  CLUS_9                             21                              21
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       56    113     51
  DEL PEAK 22(12Q24.33) WILD-TYPE    115     93    151
D55V5, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            56                             115
  CLUS_2                           113                              93
  CLUS_3                            51                             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       51     75     91
  DEL PEAK 22(12Q24.33) WILD-TYPE    121    100    130
D55V6, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            51                             121
  CLUS_2                            75                             100
  CLUS_3                            91                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       46     69     37
  DEL PEAK 22(12Q24.33) WILD-TYPE     74    127     45
D55V7, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            46                              74
  CLUS_2                            69                             127
  CLUS_3                            37                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q24.33) MUTATED       43     32     48     29
  DEL PEAK 22(12Q24.33) WILD-TYPE     73     64     80     29
D55V8, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            43                              73
  CLUS_2                            32                              64
  CLUS_3                            48                              80
  CLUS_4                            29                              29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       43     25     24
  DEL PEAK 22(12Q24.33) WILD-TYPE     57     42     67
D55V9, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            43                              57
  CLUS_2                            25                              42
  CLUS_3                            24                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       47     37      8
  DEL PEAK 22(12Q24.33) WILD-TYPE     59     79     28
D55V10, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            47                              59
  CLUS_2                            37                              79
  CLUS_3                             8                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.33) MUTATED       42     82     43
  DEL PEAK 22(12Q24.33) WILD-TYPE     79    100    101
D55V11, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            42                              79
  CLUS_2                            82                             100
  CLUS_3                            43                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12Q24.33) MUTATED       54     20     60     33
  DEL PEAK 22(12Q24.33) WILD-TYPE     51     51    105     73
D55V12, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                            54                              51
  CLUS_2                            20                              51
  CLUS_3                            60                             105
  CLUS_4                            33                              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V13, binary
                                 cls
clus                              0 1
  DEL PEAK 22(12Q24.33) MUTATED   4 2
  DEL PEAK 22(12Q24.33) WILD-TYPE 8 8
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(12Q24.33) MUTATED      4    2
  DEL PEAK 22(12Q24.33) WILD-TYPE    8    8
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                             4                               8
  CLUS_2                             2                               8
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(12Q24.33) MUTATED        2      0      1      2      1      0
  DEL PEAK 22(12Q24.33) WILD-TYPE      4      2      1      4      3      2
D55V14, multiclass
        clus
vv       DEL PEAK 22(12Q24.33) MUTATED DEL PEAK 22(12Q24.33) WILD-TYPE
  CLUS_1                             2                               4
  CLUS_2                             0                               2
  CLUS_3                             1                               1
  CLUS_4                             2                               4
  CLUS_5                             1                               3
  CLUS_6                             0                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 23(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED      133    150     67
  DEL PEAK 23(13Q14.2) WILD-TYPE     82     66     59
D56V1, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                          133                             82
  CLUS_2                          150                             66
  CLUS_3                           67                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED      211     88     51
  DEL PEAK 23(13Q14.2) WILD-TYPE     99     70     38
D56V2, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                          211                             99
  CLUS_2                           88                             70
  CLUS_3                           51                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED      104    105    141
  DEL PEAK 23(13Q14.2) WILD-TYPE     55     59     91
D56V3, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                          104                             55
  CLUS_2                          105                             59
  CLUS_3                          141                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.2) MUTATED       52      37     42     52     26     37
  DEL PEAK 23(13Q14.2) WILD-TYPE     33      20     16     30      8     38
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 23(13Q14.2) MUTATED       16     27     32     29
  DEL PEAK 23(13Q14.2) WILD-TYPE     18      9     20     13
D56V4, multiclass
         clus
vv        DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            52                             33
  CLUS_10                           37                             20
  CLUS_2                            42                             16
  CLUS_3                            52                             30
  CLUS_4                            26                              8
  CLUS_5                            37                             38
  CLUS_6                            16                             18
  CLUS_7                            27                              9
  CLUS_8                            32                             20
  CLUS_9                            29                             13
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       90    150    124
  DEL PEAK 23(13Q14.2) WILD-TYPE     81     56     78
D56V5, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           90                             81
  CLUS_2                          150                             56
  CLUS_3                          124                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED      109     88    161
  DEL PEAK 23(13Q14.2) WILD-TYPE     63     87     60
D56V6, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                          109                             63
  CLUS_2                           88                             87
  CLUS_3                          161                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       63    139     46
  DEL PEAK 23(13Q14.2) WILD-TYPE     57     57     36
D56V7, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           63                             57
  CLUS_2                          139                             57
  CLUS_3                           46                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       62     68     84     34
  DEL PEAK 23(13Q14.2) WILD-TYPE     54     28     44     24
D56V8, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           62                             54
  CLUS_2                           68                             28
  CLUS_3                           84                             44
  CLUS_4                           34                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       57     47     64
  DEL PEAK 23(13Q14.2) WILD-TYPE     43     20     27
D56V9, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           57                             43
  CLUS_2                           47                             20
  CLUS_3                           64                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       66     79     23
  DEL PEAK 23(13Q14.2) WILD-TYPE     40     37     13
D56V10, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           66                             40
  CLUS_2                           79                             37
  CLUS_3                           23                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.2) MUTATED       69    117     93
  DEL PEAK 23(13Q14.2) WILD-TYPE     52     65     51
D56V11, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           69                             52
  CLUS_2                          117                             65
  CLUS_3                           93                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q14.2) MUTATED       71     44     95     69
  DEL PEAK 23(13Q14.2) WILD-TYPE     34     27     70     37
D56V12, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                           71                             34
  CLUS_2                           44                             27
  CLUS_3                           95                             70
  CLUS_4                           69                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V13, binary
                                cls
clus                             0 1
  DEL PEAK 23(13Q14.2) MUTATED   7 7
  DEL PEAK 23(13Q14.2) WILD-TYPE 5 3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(13Q14.2) MUTATED      7    7
  DEL PEAK 23(13Q14.2) WILD-TYPE    5    3
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            7                              3
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(13Q14.2) MUTATED        4      2      1      2      4      1
  DEL PEAK 23(13Q14.2) WILD-TYPE      2      0      1      4      0      1
D56V14, multiclass
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            2                              0
  CLUS_3                            1                              1
  CLUS_4                            2                              4
  CLUS_5                            4                              0
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 24(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED      108    127     59
  DEL PEAK 24(14Q23.3) WILD-TYPE    107     89     67
D57V1, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                          108                            107
  CLUS_2                          127                             89
  CLUS_3                           59                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED      168     84     42
  DEL PEAK 24(14Q23.3) WILD-TYPE    142     74     47
D57V2, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                          168                            142
  CLUS_2                           84                             74
  CLUS_3                           42                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       89     86    119
  DEL PEAK 24(14Q23.3) WILD-TYPE     70     78    113
D57V3, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           89                             70
  CLUS_2                           86                             78
  CLUS_3                          119                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q23.3) MUTATED       46      30     35     46     14     40
  DEL PEAK 24(14Q23.3) WILD-TYPE     39      27     23     36     20     35
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 24(14Q23.3) MUTATED       18     21     21     23
  DEL PEAK 24(14Q23.3) WILD-TYPE     16     15     31     19
D57V4, multiclass
         clus
vv        DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                            46                             39
  CLUS_10                           30                             27
  CLUS_2                            35                             23
  CLUS_3                            46                             36
  CLUS_4                            14                             20
  CLUS_5                            40                             35
  CLUS_6                            18                             16
  CLUS_7                            21                             15
  CLUS_8                            21                             31
  CLUS_9                            23                             19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       70    104    131
  DEL PEAK 24(14Q23.3) WILD-TYPE    101    102     71
D57V5, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           70                            101
  CLUS_2                          104                            102
  CLUS_3                          131                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       91     88    120
  DEL PEAK 24(14Q23.3) WILD-TYPE     81     87    101
D57V6, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           91                             81
  CLUS_2                           88                             87
  CLUS_3                          120                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       56    111     42
  DEL PEAK 24(14Q23.3) WILD-TYPE     64     85     40
D57V7, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           56                             64
  CLUS_2                          111                             85
  CLUS_3                           42                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       54     53     70     32
  DEL PEAK 24(14Q23.3) WILD-TYPE     62     43     58     26
D57V8, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           54                             62
  CLUS_2                           53                             43
  CLUS_3                           70                             58
  CLUS_4                           32                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       52     35     44
  DEL PEAK 24(14Q23.3) WILD-TYPE     48     32     47
D57V9, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           52                             48
  CLUS_2                           35                             32
  CLUS_3                           44                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       60     54     17
  DEL PEAK 24(14Q23.3) WILD-TYPE     46     62     19
D57V10, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           60                             46
  CLUS_2                           54                             62
  CLUS_3                           17                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q23.3) MUTATED       64     97     73
  DEL PEAK 24(14Q23.3) WILD-TYPE     57     85     71
D57V11, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           64                             57
  CLUS_2                           97                             85
  CLUS_3                           73                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q23.3) MUTATED       54     34     93     53
  DEL PEAK 24(14Q23.3) WILD-TYPE     51     37     72     53
D57V12, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                           54                             51
  CLUS_2                           34                             37
  CLUS_3                           93                             72
  CLUS_4                           53                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V13, binary
                                cls
clus                             0 1
  DEL PEAK 24(14Q23.3) MUTATED   8 5
  DEL PEAK 24(14Q23.3) WILD-TYPE 4 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(14Q23.3) MUTATED      8    5
  DEL PEAK 24(14Q23.3) WILD-TYPE    4    5
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                            8                              4
  CLUS_2                            5                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(14Q23.3) MUTATED        5      2      0      2      2      2
  DEL PEAK 24(14Q23.3) WILD-TYPE      1      0      2      4      2      0
D57V14, multiclass
        clus
vv       DEL PEAK 24(14Q23.3) MUTATED DEL PEAK 24(14Q23.3) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            2                              0
  CLUS_3                            0                              2
  CLUS_4                            2                              4
  CLUS_5                            2                              2
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 25(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED      130     98     62
  DEL PEAK 25(15Q11.2) WILD-TYPE     85    118     64
D58V1, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                          130                             85
  CLUS_2                           98                            118
  CLUS_3                           62                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED      164     71     55
  DEL PEAK 25(15Q11.2) WILD-TYPE    146     87     34
D58V2, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                          164                            146
  CLUS_2                           71                             87
  CLUS_3                           55                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED       77     74    138
  DEL PEAK 25(15Q11.2) WILD-TYPE     82     90     94
D58V3, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           77                             82
  CLUS_2                           74                             90
  CLUS_3                          138                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q11.2) MUTATED       35      28     36     40     19     43
  DEL PEAK 25(15Q11.2) WILD-TYPE     50      29     22     42     15     32
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 25(15Q11.2) MUTATED       23     21     32     12
  DEL PEAK 25(15Q11.2) WILD-TYPE     11     15     20     30
D58V4, multiclass
         clus
vv        DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                            35                             50
  CLUS_10                           28                             29
  CLUS_2                            36                             22
  CLUS_3                            40                             42
  CLUS_4                            19                             15
  CLUS_5                            43                             32
  CLUS_6                            23                             11
  CLUS_7                            21                             15
  CLUS_8                            32                             20
  CLUS_9                            12                             30
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED       68     76    155
  DEL PEAK 25(15Q11.2) WILD-TYPE    103    130     47
D58V5, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           68                            103
  CLUS_2                           76                            130
  CLUS_3                          155                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED      114     82    100
  DEL PEAK 25(15Q11.2) WILD-TYPE     58     93    121
D58V6, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                          114                             58
  CLUS_2                           82                             93
  CLUS_3                          100                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED       57    107     42
  DEL PEAK 25(15Q11.2) WILD-TYPE     63     89     40
D58V7, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           57                             63
  CLUS_2                          107                             89
  CLUS_3                           42                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q11.2) MUTATED       56     51     70     29
  DEL PEAK 25(15Q11.2) WILD-TYPE     60     45     58     29
D58V8, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           56                             60
  CLUS_2                           51                             45
  CLUS_3                           70                             58
  CLUS_4                           29                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED       47     30     61
  DEL PEAK 25(15Q11.2) WILD-TYPE     53     37     30
D58V9, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           47                             53
  CLUS_2                           30                             37
  CLUS_3                           61                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED       51     63     24
  DEL PEAK 25(15Q11.2) WILD-TYPE     55     53     12
D58V10, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           51                             55
  CLUS_2                           63                             53
  CLUS_3                           24                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q11.2) MUTATED       54    110     79
  DEL PEAK 25(15Q11.2) WILD-TYPE     67     72     65
D58V11, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           54                             67
  CLUS_2                          110                             72
  CLUS_3                           79                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q11.2) MUTATED       43     40    102     58
  DEL PEAK 25(15Q11.2) WILD-TYPE     62     31     63     48
D58V12, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                           43                             62
  CLUS_2                           40                             31
  CLUS_3                          102                             63
  CLUS_4                           58                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V13, binary
                                cls
clus                             0 1
  DEL PEAK 25(15Q11.2) MUTATED   6 5
  DEL PEAK 25(15Q11.2) WILD-TYPE 6 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(15Q11.2) MUTATED      6    5
  DEL PEAK 25(15Q11.2) WILD-TYPE    6    5
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            5                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(15Q11.2) MUTATED        2      1      0      5      2      1
  DEL PEAK 25(15Q11.2) WILD-TYPE      4      1      2      1      2      1
D58V14, multiclass
        clus
vv       DEL PEAK 25(15Q11.2) MUTATED DEL PEAK 25(15Q11.2) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              1
  CLUS_3                            0                              2
  CLUS_4                            5                              1
  CLUS_5                            2                              2
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 26(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED      150    124     78
  DEL PEAK 26(15Q15.1) WILD-TYPE     65     92     48
D59V1, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                          150                             65
  CLUS_2                          124                             92
  CLUS_3                           78                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED      198     90     64
  DEL PEAK 26(15Q15.1) WILD-TYPE    112     68     25
D59V2, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                          198                            112
  CLUS_2                           90                             68
  CLUS_3                           64                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED       95     94    162
  DEL PEAK 26(15Q15.1) WILD-TYPE     64     70     70
D59V3, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           95                             64
  CLUS_2                           94                             70
  CLUS_3                          162                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q15.1) MUTATED       43      32     42     51     23     52
  DEL PEAK 26(15Q15.1) WILD-TYPE     42      25     16     31     11     23
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 26(15Q15.1) MUTATED       23     26     41     18
  DEL PEAK 26(15Q15.1) WILD-TYPE     11     10     11     24
D59V4, multiclass
         clus
vv        DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                            43                             42
  CLUS_10                           32                             25
  CLUS_2                            42                             16
  CLUS_3                            51                             31
  CLUS_4                            23                             11
  CLUS_5                            52                             23
  CLUS_6                            23                             11
  CLUS_7                            26                             10
  CLUS_8                            41                             11
  CLUS_9                            18                             24
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED       81    115    167
  DEL PEAK 26(15Q15.1) WILD-TYPE     90     91     35
D59V5, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           81                             90
  CLUS_2                          115                             91
  CLUS_3                          167                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED      134     97    129
  DEL PEAK 26(15Q15.1) WILD-TYPE     38     78     92
D59V6, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                          134                             38
  CLUS_2                           97                             78
  CLUS_3                          129                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED       68    132     52
  DEL PEAK 26(15Q15.1) WILD-TYPE     52     64     30
D59V7, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           68                             52
  CLUS_2                          132                             64
  CLUS_3                           52                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q15.1) MUTATED       65     59     89     39
  DEL PEAK 26(15Q15.1) WILD-TYPE     51     37     39     19
D59V8, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           65                             51
  CLUS_2                           59                             37
  CLUS_3                           89                             39
  CLUS_4                           39                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED       61     39     71
  DEL PEAK 26(15Q15.1) WILD-TYPE     39     28     20
D59V9, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           61                             39
  CLUS_2                           39                             28
  CLUS_3                           71                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED       68     76     27
  DEL PEAK 26(15Q15.1) WILD-TYPE     38     40      9
D59V10, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           68                             38
  CLUS_2                           76                             40
  CLUS_3                           27                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q15.1) MUTATED       77    125     89
  DEL PEAK 26(15Q15.1) WILD-TYPE     44     57     55
D59V11, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           77                             44
  CLUS_2                          125                             57
  CLUS_3                           89                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q15.1) MUTATED       58     48    124     61
  DEL PEAK 26(15Q15.1) WILD-TYPE     47     23     41     45
D59V12, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                           58                             47
  CLUS_2                           48                             23
  CLUS_3                          124                             41
  CLUS_4                           61                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V13, binary
                                cls
clus                             0 1
  DEL PEAK 26(15Q15.1) MUTATED   6 8
  DEL PEAK 26(15Q15.1) WILD-TYPE 6 2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(15Q15.1) MUTATED      6    8
  DEL PEAK 26(15Q15.1) WILD-TYPE    6    2
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                            6                              6
  CLUS_2                            8                              2
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(15Q15.1) MUTATED        2      2      0      5      3      2
  DEL PEAK 26(15Q15.1) WILD-TYPE      4      0      2      1      1      0
D59V14, multiclass
        clus
vv       DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            2                              0
  CLUS_3                            0                              2
  CLUS_4                            5                              1
  CLUS_5                            3                              1
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 27(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED      110    120     70
  DEL PEAK 27(16P13.3) WILD-TYPE    105     96     56
D60V1, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                          110                            105
  CLUS_2                          120                             96
  CLUS_3                           70                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED      174     88     38
  DEL PEAK 27(16P13.3) WILD-TYPE    136     70     51
D60V2, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                          174                            136
  CLUS_2                           88                             70
  CLUS_3                           38                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       91     80    128
  DEL PEAK 27(16P13.3) WILD-TYPE     68     84    104
D60V3, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           91                             68
  CLUS_2                           80                             84
  CLUS_3                          128                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16P13.3) MUTATED       42      29     25     45     21     43
  DEL PEAK 27(16P13.3) WILD-TYPE     43      28     33     37     13     32
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 27(16P13.3) MUTATED       21     29     25     19
  DEL PEAK 27(16P13.3) WILD-TYPE     13      7     27     23
D60V4, multiclass
         clus
vv        DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                            42                             43
  CLUS_10                           29                             28
  CLUS_2                            25                             33
  CLUS_3                            45                             37
  CLUS_4                            21                             13
  CLUS_5                            43                             32
  CLUS_6                            21                             13
  CLUS_7                            29                              7
  CLUS_8                            25                             27
  CLUS_9                            19                             23
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       82    112    119
  DEL PEAK 27(16P13.3) WILD-TYPE     89     94     83
D60V5, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           82                             89
  CLUS_2                          112                             94
  CLUS_3                          119                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       98     97    112
  DEL PEAK 27(16P13.3) WILD-TYPE     74     78    109
D60V6, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           98                             74
  CLUS_2                           97                             78
  CLUS_3                          112                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       67    103     43
  DEL PEAK 27(16P13.3) WILD-TYPE     53     93     39
D60V7, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           67                             53
  CLUS_2                          103                             93
  CLUS_3                           43                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16P13.3) MUTATED       66     51     65     31
  DEL PEAK 27(16P13.3) WILD-TYPE     50     45     63     27
D60V8, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           66                             50
  CLUS_2                           51                             45
  CLUS_3                           65                             63
  CLUS_4                           31                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       59     32     50
  DEL PEAK 27(16P13.3) WILD-TYPE     41     35     41
D60V9, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           59                             41
  CLUS_2                           32                             35
  CLUS_3                           50                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       63     59     19
  DEL PEAK 27(16P13.3) WILD-TYPE     43     57     17
D60V10, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           63                             43
  CLUS_2                           59                             57
  CLUS_3                           19                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16P13.3) MUTATED       60    107     74
  DEL PEAK 27(16P13.3) WILD-TYPE     61     75     70
D60V11, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           60                             61
  CLUS_2                          107                             75
  CLUS_3                           74                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16P13.3) MUTATED       61     33     91     56
  DEL PEAK 27(16P13.3) WILD-TYPE     44     38     74     50
D60V12, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                           61                             44
  CLUS_2                           33                             38
  CLUS_3                           91                             74
  CLUS_4                           56                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V13, binary
                                cls
clus                             0 1
  DEL PEAK 27(16P13.3) MUTATED   7 7
  DEL PEAK 27(16P13.3) WILD-TYPE 5 3
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16P13.3) MUTATED      7    7
  DEL PEAK 27(16P13.3) WILD-TYPE    5    3
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                            7                              5
  CLUS_2                            7                              3
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16P13.3) MUTATED        4      2      1      3      2      2
  DEL PEAK 27(16P13.3) WILD-TYPE      2      0      1      3      2      0
D60V14, multiclass
        clus
vv       DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE
  CLUS_1                            4                              2
  CLUS_2                            2                              0
  CLUS_3                            1                              1
  CLUS_4                            3                              3
  CLUS_5                            2                              2
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 28(16Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED      165    175    102
  DEL PEAK 28(16Q22.1) WILD-TYPE     50     41     24
D61V1, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                          165                             50
  CLUS_2                          175                             41
  CLUS_3                          102                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED      249    125     68
  DEL PEAK 28(16Q22.1) WILD-TYPE     61     33     21
D61V2, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                          249                             61
  CLUS_2                          125                             33
  CLUS_3                           68                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED      127    120    195
  DEL PEAK 28(16Q22.1) WILD-TYPE     32     44     37
D61V3, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                          127                             32
  CLUS_2                          120                             44
  CLUS_3                          195                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16Q22.1) MUTATED       68      43     42     71     25     57
  DEL PEAK 28(16Q22.1) WILD-TYPE     17      14     16     11      9     18
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 28(16Q22.1) MUTATED       28     32     43     33
  DEL PEAK 28(16Q22.1) WILD-TYPE      6      4      9      9
D61V4, multiclass
         clus
vv        DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                            68                             17
  CLUS_10                           43                             14
  CLUS_2                            42                             16
  CLUS_3                            71                             11
  CLUS_4                            25                              9
  CLUS_5                            57                             18
  CLUS_6                            28                              6
  CLUS_7                            32                              4
  CLUS_8                            43                              9
  CLUS_9                            33                              9
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED      119    171    171
  DEL PEAK 28(16Q22.1) WILD-TYPE     52     35     31
D61V5, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                          119                             52
  CLUS_2                          171                             35
  CLUS_3                          171                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED      141    138    173
  DEL PEAK 28(16Q22.1) WILD-TYPE     31     37     48
D61V6, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                          141                             31
  CLUS_2                          138                             37
  CLUS_3                          173                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED       92    157     63
  DEL PEAK 28(16Q22.1) WILD-TYPE     28     39     19
D61V7, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                           92                             28
  CLUS_2                          157                             39
  CLUS_3                           63                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q22.1) MUTATED       90     68    107     47
  DEL PEAK 28(16Q22.1) WILD-TYPE     26     28     21     11
D61V8, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                           90                             26
  CLUS_2                           68                             28
  CLUS_3                          107                             21
  CLUS_4                           47                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED       83     49     76
  DEL PEAK 28(16Q22.1) WILD-TYPE     17     18     15
D61V9, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                           83                             17
  CLUS_2                           49                             18
  CLUS_3                           76                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED       90     89     29
  DEL PEAK 28(16Q22.1) WILD-TYPE     16     27      7
D61V10, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                           90                             16
  CLUS_2                           89                             27
  CLUS_3                           29                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q22.1) MUTATED      102    149    111
  DEL PEAK 28(16Q22.1) WILD-TYPE     19     33     33
D61V11, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                          102                             19
  CLUS_2                          149                             33
  CLUS_3                          111                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q22.1) MUTATED       89     50    140     83
  DEL PEAK 28(16Q22.1) WILD-TYPE     16     21     25     23
D61V12, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                           89                             16
  CLUS_2                           50                             21
  CLUS_3                          140                             25
  CLUS_4                           83                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V13, binary
                                cls
clus                              0  1
  DEL PEAK 28(16Q22.1) MUTATED   10  9
  DEL PEAK 28(16Q22.1) WILD-TYPE  2  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(16Q22.1) MUTATED     10    9
  DEL PEAK 28(16Q22.1) WILD-TYPE    2    1
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            9                              1
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q22.1) MUTATED        5      2      2      6      2      2
  DEL PEAK 28(16Q22.1) WILD-TYPE      1      0      0      0      2      0
D61V14, multiclass
        clus
vv       DEL PEAK 28(16Q22.1) MUTATED DEL PEAK 28(16Q22.1) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            2                              0
  CLUS_3                            2                              0
  CLUS_4                            6                              0
  CLUS_5                            2                              2
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 29(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED      160    168    106
  DEL PEAK 29(16Q23.1) WILD-TYPE     55     48     20
D62V1, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                          160                             55
  CLUS_2                          168                             48
  CLUS_3                          106                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED      238    130     66
  DEL PEAK 29(16Q23.1) WILD-TYPE     72     28     23
D62V2, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                          238                             72
  CLUS_2                          130                             28
  CLUS_3                           66                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED      130    119    186
  DEL PEAK 29(16Q23.1) WILD-TYPE     29     45     46
D62V3, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                          130                             29
  CLUS_2                          119                             45
  CLUS_3                          186                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16Q23.1) MUTATED       69      39     40     68     32     59
  DEL PEAK 29(16Q23.1) WILD-TYPE     16      18     18     14      2     16
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 29(16Q23.1) MUTATED       24     29     44     31
  DEL PEAK 29(16Q23.1) WILD-TYPE     10      7      8     11
D62V4, multiclass
         clus
vv        DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                            69                             16
  CLUS_10                           39                             18
  CLUS_2                            40                             18
  CLUS_3                            68                             14
  CLUS_4                            32                              2
  CLUS_5                            59                             16
  CLUS_6                            24                             10
  CLUS_7                            29                              7
  CLUS_8                            44                              8
  CLUS_9                            31                             11
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED      114    168    170
  DEL PEAK 29(16Q23.1) WILD-TYPE     57     38     32
D62V5, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                          114                             57
  CLUS_2                          168                             38
  CLUS_3                          170                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED      139    133    171
  DEL PEAK 29(16Q23.1) WILD-TYPE     33     42     50
D62V6, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                          139                             33
  CLUS_2                          133                             42
  CLUS_3                          171                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       90    153     64
  DEL PEAK 29(16Q23.1) WILD-TYPE     30     43     18
D62V7, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           90                             30
  CLUS_2                          153                             43
  CLUS_3                           64                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.1) MUTATED       91     68    105     43
  DEL PEAK 29(16Q23.1) WILD-TYPE     25     28     23     15
D62V8, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           91                             25
  CLUS_2                           68                             28
  CLUS_3                          105                             23
  CLUS_4                           43                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       80     49     76
  DEL PEAK 29(16Q23.1) WILD-TYPE     20     18     15
D62V9, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           80                             20
  CLUS_2                           49                             18
  CLUS_3                           76                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       88     86     31
  DEL PEAK 29(16Q23.1) WILD-TYPE     18     30      5
D62V10, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           88                             18
  CLUS_2                           86                             30
  CLUS_3                           31                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED      103    148    106
  DEL PEAK 29(16Q23.1) WILD-TYPE     18     34     38
D62V11, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                          103                             18
  CLUS_2                          148                             34
  CLUS_3                          106                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.1) MUTATED       87     51    140     79
  DEL PEAK 29(16Q23.1) WILD-TYPE     18     20     25     27
D62V12, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           87                             18
  CLUS_2                           51                             20
  CLUS_3                          140                             25
  CLUS_4                           79                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V13, binary
                                cls
clus                              0  1
  DEL PEAK 29(16Q23.1) MUTATED   10  8
  DEL PEAK 29(16Q23.1) WILD-TYPE  2  2
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(16Q23.1) MUTATED     10    8
  DEL PEAK 29(16Q23.1) WILD-TYPE    2    2
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            8                              2
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED        5      1      2      5      3      2
  DEL PEAK 29(16Q23.1) WILD-TYPE      1      1      0      1      1      0
D62V14, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                            5                              1
  CLUS_2                            1                              1
  CLUS_3                            2                              0
  CLUS_4                            5                              1
  CLUS_5                            3                              1
  CLUS_6                            2                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 30(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      174    189    109
  DEL PEAK 30(17P12) WILD-TYPE     41     27     17
D63V1, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        174                           41
  CLUS_2                        189                           27
  CLUS_3                        109                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      264    137     71
  DEL PEAK 30(17P12) WILD-TYPE     46     21     18
D63V2, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        264                           46
  CLUS_2                        137                           21
  CLUS_3                         71                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      139    137    196
  DEL PEAK 30(17P12) WILD-TYPE     20     27     36
D63V3, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        139                           20
  CLUS_2                        137                           27
  CLUS_3                        196                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(17P12) MUTATED       74      50     49     69     29     66
  DEL PEAK 30(17P12) WILD-TYPE     11       7      9     13      5      9
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 30(17P12) MUTATED       30     31     38     36
  DEL PEAK 30(17P12) WILD-TYPE      4      5     14      6
D63V4, multiclass
         clus
vv        DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                          74                           11
  CLUS_10                         50                            7
  CLUS_2                          49                            9
  CLUS_3                          69                           13
  CLUS_4                          29                            5
  CLUS_5                          66                            9
  CLUS_6                          30                            4
  CLUS_7                          31                            5
  CLUS_8                          38                           14
  CLUS_9                          36                            6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      144    178    169
  DEL PEAK 30(17P12) WILD-TYPE     27     28     33
D63V5, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        144                           27
  CLUS_2                        178                           28
  CLUS_3                        169                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      140    152    190
  DEL PEAK 30(17P12) WILD-TYPE     32     23     31
D63V6, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        140                           32
  CLUS_2                        152                           23
  CLUS_3                        190                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      100    162     70
  DEL PEAK 30(17P12) WILD-TYPE     20     34     12
D63V7, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        100                           20
  CLUS_2                        162                           34
  CLUS_3                         70                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P12) MUTATED       96     82    102     52
  DEL PEAK 30(17P12) WILD-TYPE     20     14     26      6
D63V8, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         96                           20
  CLUS_2                         82                           14
  CLUS_3                        102                           26
  CLUS_4                         52                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED       89     60     73
  DEL PEAK 30(17P12) WILD-TYPE     11      7     18
D63V9, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         89                           11
  CLUS_2                         60                            7
  CLUS_3                         73                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED       95     99     28
  DEL PEAK 30(17P12) WILD-TYPE     11     17      8
D63V10, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         95                           11
  CLUS_2                         99                           17
  CLUS_3                         28                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P12) MUTATED      105    161    121
  DEL PEAK 30(17P12) WILD-TYPE     16     21     23
D63V11, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        105                           16
  CLUS_2                        161                           21
  CLUS_3                        121                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P12) MUTATED       97     59    141     90
  DEL PEAK 30(17P12) WILD-TYPE      8     12     24     16
D63V12, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         97                            8
  CLUS_2                         59                           12
  CLUS_3                        141                           24
  CLUS_4                         90                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D63V13, binary
                              cls
clus                            0  1
  DEL PEAK 30(17P12) MUTATED   11  9
  DEL PEAK 30(17P12) WILD-TYPE  1  1
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(17P12) MUTATED     11    9
  DEL PEAK 30(17P12) WILD-TYPE    1    1
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         11                            1
  CLUS_2                          9                            1
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P12) MUTATED        6      2      2      5      3      2
  DEL PEAK 30(17P12) WILD-TYPE      0      0      0      1      1      0
D63V14, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 30(17P12) WILD-TYPE"
clus
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                          20                            2 
                TCGA-04-1652                 TCGA-09-2050 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-09-2054                 TCGA-13-0908 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-23-2077                 TCGA-24-1928 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-24-2036                 TCGA-24-2288 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-24-2290                 TCGA-24-2297 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-25-2392                 TCGA-25-2399 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-25-2400                 TCGA-25-2404 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-59-2363                 TCGA-61-1918 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-61-2088                 TCGA-61-2098 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 
                TCGA-61-2109                 TCGA-61-2111 
"DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) MUTATED" 

Clustering(64) Variable = DEL PEAK 31(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED      175    178    102
  DEL PEAK 31(17Q11.2) WILD-TYPE     40     38     24
D64V1, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                          175                             40
  CLUS_2                          178                             38
  CLUS_3                          102                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED      252    135     68
  DEL PEAK 31(17Q11.2) WILD-TYPE     58     23     21
D64V2, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                          252                             58
  CLUS_2                          135                             23
  CLUS_3                           68                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED      127    136    192
  DEL PEAK 31(17Q11.2) WILD-TYPE     32     28     40
D64V3, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                          127                             32
  CLUS_2                          136                             28
  CLUS_3                          192                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17Q11.2) MUTATED       68      46     50     71     25     64
  DEL PEAK 31(17Q11.2) WILD-TYPE     17      11      8     11      9     11
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 31(17Q11.2) MUTATED       29     31     35     36
  DEL PEAK 31(17Q11.2) WILD-TYPE      5      5     17      6
D64V4, multiclass
         clus
vv        DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                            68                             17
  CLUS_10                           46                             11
  CLUS_2                            50                              8
  CLUS_3                            71                             11
  CLUS_4                            25                              9
  CLUS_5                            64                             11
  CLUS_6                            29                              5
  CLUS_7                            31                              5
  CLUS_8                            35                             17
  CLUS_9                            36                              6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED      136    184    152
  DEL PEAK 31(17Q11.2) WILD-TYPE     35     22     50
D64V5, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                          136                             35
  CLUS_2                          184                             22
  CLUS_3                          152                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED      127    145    193
  DEL PEAK 31(17Q11.2) WILD-TYPE     45     30     28
D64V6, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                          127                             45
  CLUS_2                          145                             30
  CLUS_3                          193                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       98    160     64
  DEL PEAK 31(17Q11.2) WILD-TYPE     22     36     18
D64V7, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           98                             22
  CLUS_2                          160                             36
  CLUS_3                           64                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q11.2) MUTATED       92     85     95     50
  DEL PEAK 31(17Q11.2) WILD-TYPE     24     11     33      8
D64V8, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           92                             24
  CLUS_2                           85                             11
  CLUS_3                           95                             33
  CLUS_4                           50                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       86     52     75
  DEL PEAK 31(17Q11.2) WILD-TYPE     14     15     16
D64V9, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           86                             14
  CLUS_2                           52                             15
  CLUS_3                           75                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       91     94     28
  DEL PEAK 31(17Q11.2) WILD-TYPE     15     22      8
D64V10, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           91                             15
  CLUS_2                           94                             22
  CLUS_3                           28                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       98    160    117
  DEL PEAK 31(17Q11.2) WILD-TYPE     23     22     27
D64V11, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           98                             23
  CLUS_2                          160                             22
  CLUS_3                          117                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q11.2) MUTATED       95     57    137     86
  DEL PEAK 31(17Q11.2) WILD-TYPE     10     14     28     20
D64V12, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           95                             10
  CLUS_2                           57                             14
  CLUS_3                          137                             28
  CLUS_4                           86                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D64V13, binary
                                cls
clus                              0  1
  DEL PEAK 31(17Q11.2) MUTATED   10  9
  DEL PEAK 31(17Q11.2) WILD-TYPE  2  1
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(17Q11.2) MUTATED     10    9
  DEL PEAK 31(17Q11.2) WILD-TYPE    2    1
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           10                              2
  CLUS_2                            9                              1
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED        6      2      2      4      4      1
  DEL PEAK 31(17Q11.2) WILD-TYPE      0      0      0      2      0      1
D64V14, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                            6                              0
  CLUS_2                            2                              0
  CLUS_3                            2                              0
  CLUS_4                            4                              2
  CLUS_5                            4                              0
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 32(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED      144    140     82
  DEL PEAK 32(18Q23) WILD-TYPE     71     76     44
D65V1, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                        144                           71
  CLUS_2                        140                           76
  CLUS_3                         82                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED      205    101     60
  DEL PEAK 32(18Q23) WILD-TYPE    105     57     29
D65V2, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                        205                          105
  CLUS_2                        101                           57
  CLUS_3                         60                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED      112    105    149
  DEL PEAK 32(18Q23) WILD-TYPE     47     59     83
D65V3, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                        112                           47
  CLUS_2                        105                           59
  CLUS_3                        149                           83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       61      39     34     52     22     49
  DEL PEAK 32(18Q23) WILD-TYPE     24      18     24     30     12     26
                              vv
clus                           CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 32(18Q23) MUTATED       22     24     35     28
  DEL PEAK 32(18Q23) WILD-TYPE     12     12     17     14
D65V4, multiclass
         clus
vv        DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                          61                           24
  CLUS_10                         39                           18
  CLUS_2                          34                           24
  CLUS_3                          52                           30
  CLUS_4                          22                           12
  CLUS_5                          49                           26
  CLUS_6                          22                           12
  CLUS_7                          24                           12
  CLUS_8                          35                           17
  CLUS_9                          28                           14
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED      103    154    124
  DEL PEAK 32(18Q23) WILD-TYPE     68     52     78
D65V5, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                        103                           68
  CLUS_2                        154                           52
  CLUS_3                        124                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED      109    120    147
  DEL PEAK 32(18Q23) WILD-TYPE     63     55     74
D65V6, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                        109                           63
  CLUS_2                        120                           55
  CLUS_3                        147                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       72    131     53
  DEL PEAK 32(18Q23) WILD-TYPE     48     65     29
D65V7, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         72                           48
  CLUS_2                        131                           65
  CLUS_3                         53                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       71     58     92     35
  DEL PEAK 32(18Q23) WILD-TYPE     45     38     36     23
D65V8, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         71                           45
  CLUS_2                         58                           38
  CLUS_3                         92                           36
  CLUS_4                         35                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       64     39     66
  DEL PEAK 32(18Q23) WILD-TYPE     36     28     25
D65V9, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         64                           36
  CLUS_2                         39                           28
  CLUS_3                         66                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       70     72     27
  DEL PEAK 32(18Q23) WILD-TYPE     36     44      9
D65V10, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         70                           36
  CLUS_2                         72                           44
  CLUS_3                         27                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       82    123     91
  DEL PEAK 32(18Q23) WILD-TYPE     39     59     53
D65V11, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         82                           39
  CLUS_2                        123                           59
  CLUS_3                         91                           53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       75     47    109     65
  DEL PEAK 32(18Q23) WILD-TYPE     30     24     56     41
D65V12, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         75                           30
  CLUS_2                         47                           24
  CLUS_3                        109                           56
  CLUS_4                         65                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D65V13, binary
                              cls
clus                           0 1
  DEL PEAK 32(18Q23) MUTATED   8 8
  DEL PEAK 32(18Q23) WILD-TYPE 4 2
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 32(18Q23) MUTATED      8    8
  DEL PEAK 32(18Q23) WILD-TYPE    4    2
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                          8                            4
  CLUS_2                          8                            2
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(18Q23) MUTATED        4      2      2      3      3      2
  DEL PEAK 32(18Q23) WILD-TYPE      2      0      0      3      1      0
D65V14, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                          4                            2
  CLUS_2                          2                            0
  CLUS_3                          2                            0
  CLUS_4                          3                            3
  CLUS_5                          3                            1
  CLUS_6                          2                            0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 33(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      196    184    111
  DEL PEAK 33(19P13.3) WILD-TYPE     19     32     15
D66V1, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          196                             19
  CLUS_2                          184                             32
  CLUS_3                          111                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      272    135     84
  DEL PEAK 33(19P13.3) WILD-TYPE     38     23      5
D66V2, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          272                             38
  CLUS_2                          135                             23
  CLUS_3                           84                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      139    144    207
  DEL PEAK 33(19P13.3) WILD-TYPE     20     20     25
D66V3, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          139                             20
  CLUS_2                          144                             20
  CLUS_3                          207                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.3) MUTATED       72      50     52     69     33     66
  DEL PEAK 33(19P13.3) WILD-TYPE     13       7      6     13      1      9
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 33(19P13.3) MUTATED       32     30     47     39
  DEL PEAK 33(19P13.3) WILD-TYPE      2      6      5      3
D66V4, multiclass
         clus
vv        DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                            72                             13
  CLUS_10                           50                              7
  CLUS_2                            52                              6
  CLUS_3                            69                             13
  CLUS_4                            33                              1
  CLUS_5                            66                              9
  CLUS_6                            32                              2
  CLUS_7                            30                              6
  CLUS_8                            47                              5
  CLUS_9                            39                              3
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      142    178    192
  DEL PEAK 33(19P13.3) WILD-TYPE     29     28     10
D66V5, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          142                             29
  CLUS_2                          178                             28
  CLUS_3                          192                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      161    153    187
  DEL PEAK 33(19P13.3) WILD-TYPE     11     22     34
D66V6, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          161                             11
  CLUS_2                          153                             22
  CLUS_3                          187                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      105    175     70
  DEL PEAK 33(19P13.3) WILD-TYPE     15     21     12
D66V7, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          105                             15
  CLUS_2                          175                             21
  CLUS_3                           70                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       97     85    116     52
  DEL PEAK 33(19P13.3) WILD-TYPE     19     11     12      6
D66V8, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           97                             19
  CLUS_2                           85                             11
  CLUS_3                          116                             12
  CLUS_4                           52                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       86     58     84
  DEL PEAK 33(19P13.3) WILD-TYPE     14      9      7
D66V9, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           86                             14
  CLUS_2                           58                              9
  CLUS_3                           84                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       93    101     34
  DEL PEAK 33(19P13.3) WILD-TYPE     13     15      2
D66V10, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           93                             13
  CLUS_2                          101                             15
  CLUS_3                           34                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED      107    162    133
  DEL PEAK 33(19P13.3) WILD-TYPE     14     20     11
D66V11, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          107                             14
  CLUS_2                          162                             20
  CLUS_3                          133                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       93     62    150     97
  DEL PEAK 33(19P13.3) WILD-TYPE     12      9     15      9
D66V12, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           93                             12
  CLUS_2                           62                              9
  CLUS_3                          150                             15
  CLUS_4                           97                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D66V13, binary
                                cls
clus                              0  1
  DEL PEAK 33(19P13.3) MUTATED   11 10
  DEL PEAK 33(19P13.3) WILD-TYPE  1  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(19P13.3) MUTATED     11   10
  DEL PEAK 33(19P13.3) WILD-TYPE    1    0
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           11                              1
  CLUS_2                           10                              0
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(19P13.3) MUTATED        5      2      2      6      4      2
  DEL PEAK 33(19P13.3) WILD-TYPE      1      0      0      0      0      0
D66V14, multiclass
[1] "Remove cluster labels:"         "DEL PEAK 33(19P13.3) WILD-TYPE"
clus
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                            21                              1 
                  TCGA-04-1652                   TCGA-09-2050 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-09-2054                   TCGA-13-0908 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-23-2077                   TCGA-24-1928 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-24-2036                   TCGA-24-2288 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-24-2289                   TCGA-24-2290 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-24-2297                   TCGA-25-2392 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-25-2399                   TCGA-25-2400 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-25-2404                   TCGA-57-1994 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-59-2363                   TCGA-61-2088 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-61-2098                   TCGA-61-2109 
"DEL PEAK 33(19P13.3) MUTATED" "DEL PEAK 33(19P13.3) MUTATED" 
                  TCGA-61-2111 
"DEL PEAK 33(19P13.3) MUTATED" 

Clustering(67) Variable = DEL PEAK 34(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED      127    117     46
  DEL PEAK 34(19Q13.33) WILD-TYPE     88     99     80
D67V1, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                           127                              88
  CLUS_2                           117                              99
  CLUS_3                            46                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED      178     64     48
  DEL PEAK 34(19Q13.33) WILD-TYPE    132     94     41
D67V2, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                           178                             132
  CLUS_2                            64                              94
  CLUS_3                            48                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED       78     76    135
  DEL PEAK 34(19Q13.33) WILD-TYPE     81     88     97
D67V3, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            78                              81
  CLUS_2                            76                              88
  CLUS_3                           135                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19Q13.33) MUTATED       44      35     36     50     10     32
  DEL PEAK 34(19Q13.33) WILD-TYPE     41      22     22     32     24     43
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 34(19Q13.33) MUTATED       18     16     23     25
  DEL PEAK 34(19Q13.33) WILD-TYPE     16     20     29     17
D67V4, multiclass
         clus
vv        DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                             44                              41
  CLUS_10                            35                              22
  CLUS_2                             36                              22
  CLUS_3                             50                              32
  CLUS_4                             10                              24
  CLUS_5                             32                              43
  CLUS_6                             18                              16
  CLUS_7                             16                              20
  CLUS_8                             23                              29
  CLUS_9                             25                              17
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED       86     93    120
  DEL PEAK 34(19Q13.33) WILD-TYPE     85    113     82
D67V5, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            86                              85
  CLUS_2                            93                             113
  CLUS_3                           120                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED      103     73    118
  DEL PEAK 34(19Q13.33) WILD-TYPE     69    102    103
D67V6, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                           103                              69
  CLUS_2                            73                             102
  CLUS_3                           118                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED       47    104     45
  DEL PEAK 34(19Q13.33) WILD-TYPE     73     92     37
D67V7, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            47                              73
  CLUS_2                           104                              92
  CLUS_3                            45                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19Q13.33) MUTATED       49     51     64     32
  DEL PEAK 34(19Q13.33) WILD-TYPE     67     45     64     26
D67V8, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            49                              67
  CLUS_2                            51                              45
  CLUS_3                            64                              64
  CLUS_4                            32                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED       37     35     54
  DEL PEAK 34(19Q13.33) WILD-TYPE     63     32     37
D67V9, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            37                              63
  CLUS_2                            35                              32
  CLUS_3                            54                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED       44     64     18
  DEL PEAK 34(19Q13.33) WILD-TYPE     62     52     18
D67V10, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            44                              62
  CLUS_2                            64                              52
  CLUS_3                            18                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.33) MUTATED       56     94     80
  DEL PEAK 34(19Q13.33) WILD-TYPE     65     88     64
D67V11, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            56                              65
  CLUS_2                            94                              88
  CLUS_3                            80                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19Q13.33) MUTATED       44     36     93     57
  DEL PEAK 34(19Q13.33) WILD-TYPE     61     35     72     49
D67V12, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                            44                              61
  CLUS_2                            36                              35
  CLUS_3                            93                              72
  CLUS_4                            57                              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D67V13, binary
                                 cls
clus                              0 1
  DEL PEAK 34(19Q13.33) MUTATED   8 4
  DEL PEAK 34(19Q13.33) WILD-TYPE 4 6
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(19Q13.33) MUTATED      8    4
  DEL PEAK 34(19Q13.33) WILD-TYPE    4    6
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                             8                               4
  CLUS_2                             4                               6
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19Q13.33) MUTATED        4      2      2      3      0      1
  DEL PEAK 34(19Q13.33) WILD-TYPE      2      0      0      3      4      1
D67V14, multiclass
        clus
vv       DEL PEAK 34(19Q13.33) MUTATED DEL PEAK 34(19Q13.33) WILD-TYPE
  CLUS_1                             4                               2
  CLUS_2                             2                               0
  CLUS_3                             2                               0
  CLUS_4                             3                               3
  CLUS_5                             0                               4
  CLUS_6                             1                               1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 35(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED      121    104     51
  DEL PEAK 35(19Q13.43) WILD-TYPE     94    112     75
D68V1, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                           121                              94
  CLUS_2                           104                             112
  CLUS_3                            51                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED      157     68     51
  DEL PEAK 35(19Q13.43) WILD-TYPE    153     90     38
D68V2, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                           157                             153
  CLUS_2                            68                              90
  CLUS_3                            51                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       71     76    128
  DEL PEAK 35(19Q13.43) WILD-TYPE     88     88    104
D68V3, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            71                              88
  CLUS_2                            76                              88
  CLUS_3                           128                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(19Q13.43) MUTATED       41      32     30     41     10     35
  DEL PEAK 35(19Q13.43) WILD-TYPE     44      25     28     41     24     40
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 35(19Q13.43) MUTATED       21     17     25     23
  DEL PEAK 35(19Q13.43) WILD-TYPE     13     19     27     19
D68V4, multiclass
         clus
vv        DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                             41                              44
  CLUS_10                            32                              25
  CLUS_2                             30                              28
  CLUS_3                             41                              41
  CLUS_4                             10                              24
  CLUS_5                             35                              40
  CLUS_6                             21                              13
  CLUS_7                             17                              19
  CLUS_8                             25                              27
  CLUS_9                             23                              19
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       84     80    121
  DEL PEAK 35(19Q13.43) WILD-TYPE     87    126     81
D68V5, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            84                              87
  CLUS_2                            80                             126
  CLUS_3                           121                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED      105     64    111
  DEL PEAK 35(19Q13.43) WILD-TYPE     67    111    110
D68V6, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                           105                              67
  CLUS_2                            64                             111
  CLUS_3                           111                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       47     97     41
  DEL PEAK 35(19Q13.43) WILD-TYPE     73     99     41
D68V7, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            47                              73
  CLUS_2                            97                              99
  CLUS_3                            41                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.43) MUTATED       48     46     60     31
  DEL PEAK 35(19Q13.43) WILD-TYPE     68     50     68     27
D68V8, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            48                              68
  CLUS_2                            46                              50
  CLUS_3                            60                              68
  CLUS_4                            31                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       43     32     46
  DEL PEAK 35(19Q13.43) WILD-TYPE     57     35     45
D68V9, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            43                              57
  CLUS_2                            32                              35
  CLUS_3                            46                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       49     55     17
  DEL PEAK 35(19Q13.43) WILD-TYPE     57     61     19
D68V10, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            49                              57
  CLUS_2                            55                              61
  CLUS_3                            17                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       59     82     74
  DEL PEAK 35(19Q13.43) WILD-TYPE     62    100     70
D68V11, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            59                              62
  CLUS_2                            82                             100
  CLUS_3                            74                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.43) MUTATED       41     38     87     49
  DEL PEAK 35(19Q13.43) WILD-TYPE     64     33     78     57
D68V12, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            41                              64
  CLUS_2                            38                              33
  CLUS_3                            87                              78
  CLUS_4                            49                              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D68V13, binary
                                 cls
clus                              0 1
  DEL PEAK 35(19Q13.43) MUTATED   8 2
  DEL PEAK 35(19Q13.43) WILD-TYPE 4 8
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 35(19Q13.43) MUTATED      8    2
  DEL PEAK 35(19Q13.43) WILD-TYPE    4    8
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                             8                               4
  CLUS_2                             2                               8
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED        3      2      2      1      0      2
  DEL PEAK 35(19Q13.43) WILD-TYPE      3      0      0      5      4      0
D68V14, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                             3                               3
  CLUS_2                             2                               0
  CLUS_3                             2                               0
  CLUS_4                             1                               5
  CLUS_5                             0                               4
  CLUS_6                             2                               0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 36(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       93     79     49
  DEL PEAK 36(21Q22.3) WILD-TYPE    122    137     77
D69V1, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           93                            122
  CLUS_2                           79                            137
  CLUS_3                           49                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED      117     58     46
  DEL PEAK 36(21Q22.3) WILD-TYPE    193    100     43
D69V2, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                          117                            193
  CLUS_2                           58                            100
  CLUS_3                           46                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       59     68     94
  DEL PEAK 36(21Q22.3) WILD-TYPE    100     96    138
D69V3, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           59                            100
  CLUS_2                           68                             96
  CLUS_3                           94                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(21Q22.3) MUTATED       31      19     25     29      9     29
  DEL PEAK 36(21Q22.3) WILD-TYPE     54      38     33     53     25     46
                                vv
clus                             CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 36(21Q22.3) MUTATED       15     18     29     17
  DEL PEAK 36(21Q22.3) WILD-TYPE     19     18     23     25
D69V4, multiclass
         clus
vv        DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                            31                             54
  CLUS_10                           19                             38
  CLUS_2                            25                             33
  CLUS_3                            29                             53
  CLUS_4                             9                             25
  CLUS_5                            29                             46
  CLUS_6                            15                             19
  CLUS_7                            18                             18
  CLUS_8                            29                             23
  CLUS_9                            17                             25
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       65     79     83
  DEL PEAK 36(21Q22.3) WILD-TYPE    106    127    119
D69V5, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           65                            106
  CLUS_2                           79                            127
  CLUS_3                           83                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       76     63     84
  DEL PEAK 36(21Q22.3) WILD-TYPE     96    112    137
D69V6, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           76                             96
  CLUS_2                           63                            112
  CLUS_3                           84                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       49     70     30
  DEL PEAK 36(21Q22.3) WILD-TYPE     71    126     52
D69V7, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           49                             71
  CLUS_2                           70                            126
  CLUS_3                           30                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q22.3) MUTATED       48     35     47     19
  DEL PEAK 36(21Q22.3) WILD-TYPE     68     61     81     39
D69V8, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           48                             68
  CLUS_2                           35                             61
  CLUS_3                           47                             81
  CLUS_4                           19                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       40     19     36
  DEL PEAK 36(21Q22.3) WILD-TYPE     60     48     55
D69V9, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           40                             60
  CLUS_2                           19                             48
  CLUS_3                           36                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       44     35     16
  DEL PEAK 36(21Q22.3) WILD-TYPE     62     81     20
D69V10, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           44                             62
  CLUS_2                           35                             81
  CLUS_3                           16                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       45     74     55
  DEL PEAK 36(21Q22.3) WILD-TYPE     76    108     89
D69V11, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           45                             76
  CLUS_2                           74                            108
  CLUS_3                           55                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q22.3) MUTATED       38     25     69     42
  DEL PEAK 36(21Q22.3) WILD-TYPE     67     46     96     64
D69V12, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           38                             67
  CLUS_2                           25                             46
  CLUS_3                           69                             96
  CLUS_4                           42                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D69V13, binary
                                cls
clus                             0 1
  DEL PEAK 36(21Q22.3) MUTATED   5 1
  DEL PEAK 36(21Q22.3) WILD-TYPE 7 9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(21Q22.3) MUTATED      5    1
  DEL PEAK 36(21Q22.3) WILD-TYPE    7    9
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                            5                              7
  CLUS_2                            1                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q22.3) MUTATED        2      1      0      1      1      1
  DEL PEAK 36(21Q22.3) WILD-TYPE      4      1      2      5      3      1
D69V14, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                            2                              4
  CLUS_2                            1                              1
  CLUS_3                            0                              2
  CLUS_4                            1                              5
  CLUS_5                            1                              3
  CLUS_6                            1                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 37(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED      192    187    104
  DEL PEAK 37(22Q13.32) WILD-TYPE     23     29     22
D70V1, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           192                              23
  CLUS_2                           187                              29
  CLUS_3                           104                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED      266    134     83
  DEL PEAK 37(22Q13.32) WILD-TYPE     44     24      6
D70V2, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           266                              44
  CLUS_2                           134                              24
  CLUS_3                            83                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED      136    135    211
  DEL PEAK 37(22Q13.32) WILD-TYPE     23     29     21
D70V3, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           136                              23
  CLUS_2                           135                              29
  CLUS_3                           211                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(22Q13.32) MUTATED       71      48     49     74     31     60
  DEL PEAK 37(22Q13.32) WILD-TYPE     14       9      9      8      3     15
                                 vv
clus                              CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 37(22Q13.32) MUTATED       31     32     50     36
  DEL PEAK 37(22Q13.32) WILD-TYPE      3      4      2      6
D70V4, multiclass
         clus
vv        DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                             71                              14
  CLUS_10                            48                               9
  CLUS_2                             49                               9
  CLUS_3                             74                               8
  CLUS_4                             31                               3
  CLUS_5                             60                              15
  CLUS_6                             31                               3
  CLUS_7                             32                               4
  CLUS_8                             50                               2
  CLUS_9                             36                               6
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED      138    182    183
  DEL PEAK 37(22Q13.32) WILD-TYPE     33     24     19
D70V5, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           138                              33
  CLUS_2                           182                              24
  CLUS_3                           183                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED      156    151    186
  DEL PEAK 37(22Q13.32) WILD-TYPE     16     24     35
D70V6, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           156                              16
  CLUS_2                           151                              24
  CLUS_3                           186                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED      106    173     65
  DEL PEAK 37(22Q13.32) WILD-TYPE     14     23     17
D70V7, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           106                              14
  CLUS_2                           173                              23
  CLUS_3                            65                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(22Q13.32) MUTATED       94     90    111     49
  DEL PEAK 37(22Q13.32) WILD-TYPE     22      6     17      9
D70V8, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            94                              22
  CLUS_2                            90                               6
  CLUS_3                           111                              17
  CLUS_4                            49                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED       82     59     83
  DEL PEAK 37(22Q13.32) WILD-TYPE     18      8      8
D70V9, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            82                              18
  CLUS_2                            59                               8
  CLUS_3                            83                               8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED       88    100     36
  DEL PEAK 37(22Q13.32) WILD-TYPE     18     16      0
D70V10, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            88                              18
  CLUS_2                           100                              16
  CLUS_3                            36                               0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.32) MUTATED       97    164    128
  DEL PEAK 37(22Q13.32) WILD-TYPE     24     18     16
D70V11, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            97                              24
  CLUS_2                           164                              18
  CLUS_3                           128                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(22Q13.32) MUTATED       88     64    146     91
  DEL PEAK 37(22Q13.32) WILD-TYPE     17      7     19     15
D70V12, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            88                              17
  CLUS_2                            64                               7
  CLUS_3                           146                              19
  CLUS_4                            91                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D70V13, binary
                                 cls
clus                               0  1
  DEL PEAK 37(22Q13.32) MUTATED   12 10
  DEL PEAK 37(22Q13.32) WILD-TYPE  0  0
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 37(22Q13.32) MUTATED     12   10
  DEL PEAK 37(22Q13.32) WILD-TYPE    0    0
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(22Q13.32) MUTATED        6      2      2      6      4      2
  DEL PEAK 37(22Q13.32) WILD-TYPE      0      0      0      0      0      0
D70V14, multiclass

Clustering(71) Variable = DEL PEAK 38(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED      130    139     72
  DEL PEAK 38(XP21.1) WILD-TYPE     85     77     54
D71V1, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                         130                            85
  CLUS_2                         139                            77
  CLUS_3                          72                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED      195     93     53
  DEL PEAK 38(XP21.1) WILD-TYPE    115     65     36
D71V2, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                         195                           115
  CLUS_2                          93                            65
  CLUS_3                          53                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED       87    102    152
  DEL PEAK 38(XP21.1) WILD-TYPE     72     62     80
D71V3, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          87                            72
  CLUS_2                         102                            62
  CLUS_3                         152                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_10 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(XP21.1) MUTATED       49      33     34     51     20     53
  DEL PEAK 38(XP21.1) WILD-TYPE     36      24     24     31     14     22
                               vv
clus                            CLUS_6 CLUS_7 CLUS_8 CLUS_9
  DEL PEAK 38(XP21.1) MUTATED       21     21     30     29
  DEL PEAK 38(XP21.1) WILD-TYPE     13     15     22     13
D71V4, multiclass
         clus
vv        DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                           49                            36
  CLUS_10                          33                            24
  CLUS_2                           34                            24
  CLUS_3                           51                            31
  CLUS_4                           20                            14
  CLUS_5                           53                            22
  CLUS_6                           21                            13
  CLUS_7                           21                            15
  CLUS_8                           30                            22
  CLUS_9                           29                            13
[1] 10  2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED      104    136    115
  DEL PEAK 38(XP21.1) WILD-TYPE     67     70     87
D71V5, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                         104                            67
  CLUS_2                         136                            70
  CLUS_3                         115                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED       93    107    150
  DEL PEAK 38(XP21.1) WILD-TYPE     79     68     71
D71V6, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          93                            79
  CLUS_2                         107                            68
  CLUS_3                         150                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED       69    126     49
  DEL PEAK 38(XP21.1) WILD-TYPE     51     70     33
D71V7, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          69                            51
  CLUS_2                         126                            70
  CLUS_3                          49                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(XP21.1) MUTATED       62     65     77     40
  DEL PEAK 38(XP21.1) WILD-TYPE     54     31     51     18
D71V8, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          62                            54
  CLUS_2                          65                            31
  CLUS_3                          77                            51
  CLUS_4                          40                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED       62     39     55
  DEL PEAK 38(XP21.1) WILD-TYPE     38     28     36
D71V9, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          62                            38
  CLUS_2                          39                            28
  CLUS_3                          55                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED       67     64     25
  DEL PEAK 38(XP21.1) WILD-TYPE     39     52     11
D71V10, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          67                            39
  CLUS_2                          64                            52
  CLUS_3                          25                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP21.1) MUTATED       75    115     90
  DEL PEAK 38(XP21.1) WILD-TYPE     46     67     54
D71V11, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          75                            46
  CLUS_2                         115                            67
  CLUS_3                          90                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(XP21.1) MUTATED       70     42    104     64
  DEL PEAK 38(XP21.1) WILD-TYPE     35     29     61     42
D71V12, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                          70                            35
  CLUS_2                          42                            29
  CLUS_3                         104                            61
  CLUS_4                          64                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D71V13, binary
                               cls
clus                            0 1
  DEL PEAK 38(XP21.1) MUTATED   9 9
  DEL PEAK 38(XP21.1) WILD-TYPE 3 1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 38(XP21.1) MUTATED      9    9
  DEL PEAK 38(XP21.1) WILD-TYPE    3    1
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                           9                             3
  CLUS_2                           9                             1
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(XP21.1) MUTATED        3      2      2      6      3      2
  DEL PEAK 38(XP21.1) WILD-TYPE      3      0      0      0      1      0
D71V14, multiclass
        clus
vv       DEL PEAK 38(XP21.1) MUTATED DEL PEAK 38(XP21.1) WILD-TYPE
  CLUS_1                           3                             3
  CLUS_2                           2                             0
  CLUS_3                           2                             0
  CLUS_4                           6                             0
  CLUS_5                           3                             1
  CLUS_6                           2                             0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
