"Sample"	"A_T_coord_clusters"	"G_C_coord_clusters"	"Non_coord_clusters"	"clusters"	"mutations"	"complex"	"insertions"	"deletions"	"indels"	"substitutions"	"bases"	"A_to_T"	"A_to_G"	"A_to_C"	"A"	"a"	"T_to_A"	"T_to_C"	"T_to_G"	"T"	"t"	"G_to_C"	"G_to_T"	"G_to_A"	"G"	"g"	"C_to_G"	"C_to_A"	"C_to_T"	"C"	"c"	"tCw_to_G"	"tCw_to_A"	"tCw_to_T"	"tCw"	"tcw"	"tCw_per_mut"	"tCw_per_C"	"tcw_per_c"	"enrich_tCw"	"freq_tCw"	"wGa_to_C"	"wGa_to_T"	"wGa_to_A"	"wGa"	"wga"	"wGa_per_mut"	"wGa_per_G"	"wga_per_g"	"enrich_wGa"	"freq_wGa"	"[tCw_to_G+tCw_to_T]_per_mut"	"tCw_to_G+tCw_to_T"	"[(C_to_G)+(C_to_T)]-[(tCw_to_G)+(tCw_to_T)]"	"tcw+wga"	"c-tcw"	"Fisher_p-value_tCw"	"BH_Fisher_p-value_tCw"	"bonferroni_Fisher_p-value_tCw"	"odds_ratio_tCw"	"95%_confidence_lower_tCw"	"95%_confidence_upper_tCw"	"APOBEC_enrich"	"tCw_to_G_enrich"	"Fisher_p-value_tCw_to_G"	"BH_Fisher_p-value_tCw_to_G"	"bonferroni_Fisher_p-value_tCw_to_G"	"odds_ratio_tCw_to_G"	"tCw_to_T_enrich"	"Fisher_p-value_tCw_to_T"	"BH_Fisher_p-value_tCw_to_T"	"bonferroni_Fisher_p-value_tCw_to_T"	"odds_ratio_tCw_to_T"	"p-value_GvT_skew"	"BH_p-value_GvT_skew"	"bonferroni_p-value_GvT_skew"	"non-APOBEC_mutations"	"non-APOBEC_substitutions"	"APOBEC_MutLoad_MinEstimate"
"TCGA-F2-7273-01A-11D-2154-08"	0	0	0	0	46	0	9	34	43	3	123	0	0	0	0	21	0	0	0	0	15	1	1	1	3	55	0	0	0	0	32	0	0	0	0	3	0	NA	0.09375	NA	0	0	0	0	0	4	0	0	0.0727272727272727	0	0	0	0	2	7	80	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	46	3	0
"TCGA-F2-A44G-01A-11D-A26I-08"	0	0	0	0	90	3	3	34	37	50	2050	0	3	1	4	422	2	0	0	2	467	1	4	15	20	593	2	4	18	24	568	2	1	1	4	68	0.0444444444444444	0.166666666666667	0.119718309859155	1.3921568627451	0.0588235294117647	0	0	1	1	58	0.0111111111111111	0.05	0.0978077571669477	0.511206896551724	0.0172413793103448	0.0444444444444444	4	32	126	1035	0.561791171355709	1	1	1.02676670246751	0.327108951079137	Inf	1.02380952380952	6.14285714285714	0.0334206492936848	0.198586239266834	1	16.3477316226413	0.558441558441558	0.885809176841503	1	1	0.530177018491522	1	1	1	86	46	0
"TCGA-FB-A5VM-01A-11D-A32N-08"	0	0	0	0	104	1	4	12	16	87	3567	1	7	0	8	758	0	7	3	10	871	3	8	32	43	974	1	4	21	26	964	0	2	2	4	114	0.0384615384615385	0.153846153846154	0.118257261410788	1.30094466936572	0.0350877192982456	3	2	6	11	109	0.105769230769231	0.255813953488372	0.111909650924025	2.28589716236399	0.100917431192661	0.105769230769231	11	46	223	1715	0.0623359948637891	0.638943947353838	1	1.83830994526219	0.958336600419109	Inf	1.67713004484305	6.51793721973094	0.00569307766349575	0.0583540460508314	0.233416184203326	22.9975166990513	1.31178610711566	0.267052935124583	1	1	1.36697097139117	0.128135932033983	0.52535732133933	1	93	76	0
"TCGA-FB-A78T-01A-12D-A32N-08"	0	0	0	0	114	0	4	12	16	98	4018	1	4	4	9	892	2	6	0	8	885	7	7	36	50	1151	2	7	22	31	1090	1	1	0	2	103	0.0175438596491228	0.0645161290322581	0.0944954128440367	0.682743501409333	0.0194174757281553	2	1	1	4	123	0.0350877192982456	0.08	0.106863596872285	0.748617886178862	0.032520325203252	0.0350877192982456	4	63	226	2015	0.914567900932545	1	1	0.566203806766483	0.186385298403086	Inf	0.591995773345661	3.30530973451327	0.0550190339381493	0.281972548933015	1	4.45313747760737	0.170964296612756	0.997779139407774	1	1	0.156483839361419	0.545454545454546	1	1	110	94	0
"TCGA-FB-A7DR-01A-21D-A33T-08"	0	0	0	0	92	2	4	22	26	64	2624	0	1	2	3	512	1	0	4	5	612	0	4	25	29	746	1	7	19	27	754	0	0	1	1	84	0.0108695652173913	0.037037037037037	0.111405835543767	0.332451499118166	0.0119047619047619	0	1	1	2	72	0.0217391304347826	0.0689655172413793	0.096514745308311	0.71455938697318	0.0277777777777778	0.0217391304347826	2	43	156	1344	0.954476622277973	1	1	0.400883571209916	0.068477265124712	Inf	0.427350427350427	0	1	1	1	0	0.437062937062937	0.95023866510147	1	1	0.410425491397745	0.4	1	1	90	62	0
"TCGA-FZ-5919-01A-11D-1609-08"	0	0	0	0	68	1	4	4	8	59	2419	1	1	2	4	532	1	1	3	5	572	1	5	23	29	645	1	1	19	21	670	0	0	0	0	78	0	0	0.116417910447761	0	0	1	0	1	2	54	0.0294117647058824	0.0689655172413793	0.0837209302325581	0.823754789272031	0.037037037037037	0.0294117647058824	2	42	132	1183	0.942483565116874	1	1	0.426961477863463	0.0727590480864012	Inf	0.452823691460055	4.98106060606061	0.191844779398698	0.491602247209164	1	8.93266591947073	0.237193362193362	0.987757657133818	1	1	0.218728055250487	1	1	1	66	57	0
"TCGA-FZ-5920-01A-11D-1609-08"	0	0	0	0	115	1	4	16	20	94	3854	3	5	1	9	846	1	4	1	6	871	2	3	29	34	1060	3	6	36	45	1077	2	2	1	5	121	0.0434782608695652	0.111111111111111	0.112349117920149	0.988980716253443	0.0413223140495868	0	1	0	1	103	0.00869565217391304	0.0294117647058824	0.0971698113207547	0.302684180468304	0.00970873786407767	0.0260869565217391	3	67	224	1913	0.980928170713455	1	1	0.382512117022155	0.101064031614319	Inf	0.408864795918367	3.81607142857143	0.0894327972009816	0.362881263616556	1	5.68512764025139	0.146771978021978	0.999187855326216	1	1	0.133499501934395	1	1	1	112	91	0
"TCGA-FZ-5921-01A-11D-1609-08"	0	0	0	0	112	2	6	4	10	100	4100	0	3	1	4	853	1	1	3	5	922	4	5	40	49	1190	1	4	37	42	1135	0	0	3	3	121	0.0267857142857143	0.0714285714285714	0.106607929515419	0.670011806375443	0.0247933884297521	1	1	2	4	114	0.0357142857142857	0.0816326530612245	0.0957983193277311	0.852130325814536	0.0350877192982456	0.0535714285714286	6	76	235	2090	0.845936674728941	1	1	0.702218374705348	0.294360738476934	Inf	0.723923196678775	1.97872340425532	0.414005654182652	0.72036500063692	1	2.2225050493377	0.64244266371926	0.897796313357402	1	1	0.617716165062707	0.102564102564103	0.467236467236469	1	106	94	0
"TCGA-FZ-5922-01A-11D-1609-08"	0	0	0	0	97	0	5	19	24	73	2993	2	2	0	4	725	1	5	3	9	617	2	2	25	29	847	5	5	21	31	804	2	0	1	3	85	0.0309278350515464	0.0967741935483871	0.105721393034826	0.915370018975332	0.0352941176470588	0	0	2	2	97	0.0206185567010309	0.0689655172413793	0.114521841794569	0.602204052612869	0.0206185567010309	0.0515463917525773	5	48	182	1469	0.708626441216326	1	1	0.84087431643721	0.314358933725473	Inf	0.855795148247978	2.59183673469388	0.177273871763595	0.485542079417072	1	3.22490000262234	0.591614906832298	0.893896336485804	1	1	0.563277530733673	1	1	1	92	68	0
"TCGA-FZ-5923-01A-12D-1609-08"	0	0	0	0	114	0	3	7	10	104	4264	1	2	1	4	908	1	3	0	4	973	3	5	42	50	1223	2	1	43	46	1160	0	0	4	4	140	0.0350877192982456	0.0869565217391304	0.120689655172414	0.720496894409938	0.0285714285714286	0	1	3	4	126	0.0350877192982456	0.08	0.103025347506132	0.776507936507937	0.0317460317460317	0.0614035087719298	7	83	266	2117	0.884751073863205	1	1	0.671305407095605	0.303529285901329	Inf	0.696783625730994	0	1	1	1	0	0.737770897832817	0.847582508524147	1	1	0.714324128604334	0.0013986013986014	0.0114685314685315	0.0573426573426574	107	97	0
"TCGA-FZ-5924-01A-13D-1609-08"	0	0	0	0	56	0	1	7	8	48	1968	0	6	0	6	437	0	2	1	3	384	2	2	15	19	596	1	3	16	20	551	0	0	1	1	51	0.0178571428571429	0.05	0.0925589836660617	0.540196078431373	0.0196078431372549	1	0	1	2	63	0.0357142857142857	0.105263157894737	0.105704697986577	0.995822890559733	0.0317460317460317	0.0535714285714286	3	31	114	1033	0.671850881230834	1	1	0.876983449097424	0.224153269505931	Inf	0.887770897832817	3.35380116959064	0.271211597419965	0.585246078643082	1	4.52064033548878	0.649122807017544	0.827417599327066	1	1	0.625133221541398	1	1	1	53	45	0
"TCGA-FZ-5926-01A-11D-1609-08"	0	0	0	0	62	1	4	3	7	54	2214	2	1	1	4	512	0	2	1	3	479	1	2	19	22	578	0	5	20	25	645	0	0	2	2	62	0.032258064516129	0.08	0.0961240310077519	0.832258064516129	0.032258064516129	1	0	0	1	67	0.0161290322580645	0.0454545454545455	0.115916955017301	0.3921302578019	0.0149253731343284	0.0483870967741935	3	37	129	1094	0.807575985733602	1	1	0.687795620408402	0.1774435944329	Inf	0.711046511627907	9.48062015503876	0.106209150326797	0.362881263616556	1	Inf	0.486185648976347	0.926302791268913	1	1	0.458623078831801	1	1	1	59	51	0
"TCGA-H8-A6C1-01A-11D-A32N-08"	0	0	0	0	94	0	4	17	21	73	2993	1	3	2	6	684	1	1	2	4	685	1	1	33	35	853	0	6	22	28	771	0	2	1	3	76	0.0319148936170213	0.107142857142857	0.0985732814526589	1.08693609022556	0.0394736842105263	0	0	0	0	84	0	0	0.0984759671746776	0	0	0.0106382978723404	1	55	160	1464	0.996788444370805	1	1	0.166456020820229	0.00836372291216888	Inf	0.18125	0	1	1	1	0	0.184545454545455	0.996448049073701	1	1	0.16953816042795	1	1	1	93	72	0
"TCGA-HV-A7OL-01A-11D-A33T-08"	0	0	0	0	127	2	5	14	19	106	4346	1	7	3	11	1022	2	9	1	12	952	1	2	40	43	1223	1	5	34	40	1149	1	0	1	2	127	0.015748031496063	0.05	0.11053089643168	0.452362204724409	0.015748031496063	1	0	1	2	144	0.015748031496063	0.0465116279069767	0.117743254292723	0.395025839793282	0.0138888888888889	0.031496062992126	4	72	271	2101	0.97831760567167	1	1	0.430817337860852	0.14251149158472	Inf	0.460671975140804	8.75276752767528	0.0131811438071736	0.108085379218824	0.540426896094118	Inf	0.236561284531764	0.998550551977151	1	1	0.21543216489163	1	1	1	123	102	0
"TCGA-HV-A7OP-01A-11D-A33T-08"	0	0	0	0	177	1	9	26	35	141	5781	5	5	2	12	1366	5	7	2	14	1389	1	10	58	69	1503	5	4	37	46	1523	1	2	5	8	193	0.0451977401129944	0.173913043478261	0.126723571897571	1.37238116692949	0.0414507772020725	0	1	8	9	191	0.0508474576271186	0.130434782608696	0.127079174983367	1.02640564534487	0.0471204188481675	0.0790960451977401	14	87	384	2642	0.409203260238148	1	1	1.10715782576209	0.639769626538132	Inf	1.09230610561056	1.31336805555556	0.557579178530583	0.846694308139034	1	1.37587507885008	1.07834429824561	0.434085305454934	1	1	1.09076121167843	5.91102298313207e-05	0.000807839807694716	0.00242351942308415	163	127	0
"TCGA-HZ-7918-01A-11D-2154-08"	0	0	0	0	151	3	2	18	20	128	5248	3	9	6	18	1204	4	5	2	11	1294	17	14	26	57	1431	14	8	20	42	1319	6	1	4	11	195	0.0728476821192053	0.261904761904762	0.147839272175891	1.77155067155067	0.0564102564102564	6	2	9	17	182	0.112582781456954	0.298245614035088	0.127183787561146	2.344997108155	0.0934065934065934	0.165562913907285	25	52	377	2373	2.9359760354772e-05	0.000601875087272826	0.00120375017454565	3.02451191415155	1.93011868882361	Inf	2.36832133383858	2.82365020963464	0.000540649143326444	0.0073888716254614	0.0221666148763842	3.97289118640974	2.06146926536732	0.00799727743139415	0.16394418734358	0.32788837468716	2.47853274761969	1	1	1	126	103	14
"TCGA-HZ-7925-01A-11D-2154-08"	0	0	0	0	61	0	5	30	35	26	1066	0	0	0	0	190	0	2	1	3	252	1	3	9	13	304	0	1	9	10	320	0	0	0	0	32	0	0	0.1	0	0	0	0	0	0	21	0	0	0.0690789473684211	0	0	0	0	19	53	571	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	61	26	0
"TCGA-HZ-8637-01A-11D-2396-08"	0	0	0	0	197	1	11	80	91	105	4305	0	6	2	8	915	2	9	0	11	989	4	6	39	49	1162	2	3	32	37	1239	0	0	1	1	142	0.0050761421319797	0.027027027027027	0.114608555286521	0.235820327369623	0.00704225352112676	2	2	5	9	135	0.0456852791878173	0.183673469387755	0.11617900172117	1.58095238095238	0.0666666666666667	0.0406091370558376	8	69	277	2124	0.676263304175469	1	1	0.889044456348413	0.422961862350409	Inf	0.900557925828684	2.88929001203369	0.146686952033318	0.462628079489695	1	3.83023463107061	0.732496059388824	0.840423419818724	1	1	0.707891068506377	0.169802333889021	0.621212121212122	1	189	97	0
"TCGA-HZ-A49I-01A-12D-A26I-08"	0	0	0	0	92	0	4	33	37	55	2255	1	3	2	6	514	2	1	2	5	548	0	5	15	20	585	4	2	18	24	608	2	1	1	4	73	0.0434782608695652	0.166666666666667	0.120065789473684	1.38812785388128	0.0547945205479452	0	0	0	0	68	0	0	0.116239316239316	0	0	0.0326086956521739	3	34	141	1052	0.828378567657723	1	1	0.658515873870871	0.16944595544721	Inf	0.686026451983899	4.23049645390071	0.0723040095258271	0.329384932284323	1	7.43844916946607	0.256393724478831	0.983751687810087	1	1	0.233319411416399	1	1	1	89	52	0
"TCGA-HZ-A77O-01A-11D-A33T-08"	0	0	0	0	65	0	2	16	18	47	1927	0	4	0	4	432	0	1	3	4	391	2	2	18	22	579	1	3	13	17	525	0	0	0	0	52	0	0	0.0990476190476191	0	0	0	0	0	0	72	0	0	0.124352331606218	0	0	0	0	34	124	980	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	65	47	0
"TCGA-HZ-A77P-01A-11D-A33T-08"	0	0	0	0	80	0	8	14	22	58	2378	1	2	0	3	507	1	2	1	4	557	0	8	20	28	656	2	5	16	23	658	1	1	0	2	77	0.025	0.0869565217391304	0.117021276595745	0.743083003952569	0.025974025974026	0	1	0	1	73	0.0125	0.0357142857142857	0.111280487804878	0.320939334637965	0.0136986301369863	0.0125	1	37	150	1164	0.98961139370948	1	1	0.20986727237595	0.0104427875766046	Inf	0.230526315789474	4.38	0.216394882522218	0.499441733854688	1	7.73744907846229	0	1	1	1	0	1	1	1	79	57	0
"TCGA-IB-7651-01A-11D-2154-08"	0	0	0	0	20793	139	65	75	140	20514	841074	100	1055	596	1751	197308	98	1036	591	1725	199120	16	2164	6183	8363	220794	17	2331	6327	8675	223852	2	536	364	902	28780	0.0433799836483432	0.103976945244957	0.128567088969498	0.808736870985895	0.0313412091730368	3	492	391	886	27957	0.0426104939162218	0.105942843477221	0.126620288594799	0.836697220113373	0.0316915262724899	0.0365507622757659	760	11783	56737	387909	1	1	1	0.440981652897778	0.414029321888547	Inf	0.474854099058061	1.18741925129291	0.414892784092953	0.72036500063692	1	1.22088566324375	0.472974430790775	1	1	1	0.439123960383462	1.00810419301287e-260	4.13322719135277e-259	4.13322719135277e-259	20033	19754	0
"TCGA-IB-7652-01A-11D-2154-08"	0	0	0	0	137	0	3	31	34	103	4223	5	4	1	10	961	5	5	3	13	985	5	7	26	38	1111	8	8	26	42	1166	2	1	2	5	139	0.0364963503649635	0.119047619047619	0.119210977701544	0.998629667694416	0.0359712230215827	1	1	1	3	119	0.0218978102189781	0.0789473684210526	0.107110711071107	0.737063246351172	0.0252100840336134	0.0437956204379562	6	59	258	2019	0.758902867381296	1	1	0.795893390545824	0.331290070255088	Inf	0.814669051878354	2.03667262969589	0.177637346128197	0.485542079417072	1	2.34647790360995	0.509168157423971	0.942608454092725	1	1	0.479233070774391	1	1	1	131	97	0
"TCGA-IB-7885-01A-11D-2154-08"	0	0	0	0	109	0	9	43	52	57	2337	2	4	0	6	553	3	3	2	8	518	2	3	22	27	612	1	2	13	16	654	0	1	0	1	81	0.00917431192660551	0.0625	0.123853211009174	0.50462962962963	0.0123456790123457	0	0	2	2	77	0.018348623853211	0.0740740740740741	0.125816993464052	0.588744588744589	0.025974025974026	0.018348623853211	2	36	158	1108	0.958446554537296	1	1	0.389791812206985	0.0661994130090476	Inf	0.421718854097269	0	1	1	1	0	0.457866184448463	0.942551018469191	1	1	0.425213720023308	0.4	1	1	107	55	0
"TCGA-IB-8126-01A-11D-2396-08"	0	0	0	0	175	0	23	70	93	82	3362	0	10	3	13	771	4	7	2	13	725	2	7	27	36	884	2	2	16	20	982	0	2	0	2	100	0.0114285714285714	0.1	0.10183299389002	0.982	0.02	0	1	3	4	99	0.0228571428571429	0.111111111111111	0.111990950226244	0.992143658810325	0.0404040404040404	0.0171428571428571	3	44	199	1667	0.8889982248696	1	1	0.57128719339935	0.149017252956694	Inf	0.598524537581525	0	1	1	1	0	0.654201238751899	0.850288737604769	1	1	0.628395086800926	0.181818181818182	0.621212121212122	1	172	79	0
"TCGA-IB-A5SO-01A-11D-A32N-08"	0	0	0	0	111	1	3	18	21	89	3649	0	2	0	2	824	1	6	1	8	867	3	2	41	46	951	2	3	28	33	1007	0	0	3	3	124	0.027027027027027	0.0909090909090909	0.123138033763654	0.738269794721408	0.0241935483870968	0	0	4	4	130	0.036036036036036	0.0869565217391304	0.136698212407992	0.636120401337793	0.0307692307692308	0.0630630630630631	7	67	254	1704	0.858202090604226	1	1	0.701014239973382	0.314747585158683	Inf	0.729197701638647	0	1	1	1	0	0.782038114800867	0.805778383897661	1	1	0.757524342272553	0.000582750582750584	0.00597319347319349	0.0238927738927739	104	82	0
"TCGA-IB-A5SP-01A-11D-A32N-08"	0	0	0	0	130	0	5	17	22	108	4428	2	5	1	8	938	1	4	2	7	980	5	4	45	54	1237	2	8	29	39	1273	1	0	1	2	138	0.0153846153846154	0.0512820512820513	0.10840534171249	0.47305834262356	0.0144927536231884	2	0	0	2	139	0.0153846153846154	0.037037037037037	0.112368633791431	0.329602984279243	0.0143884892086331	0.0307692307692308	4	77	277	2233	0.981887568202482	1	1	0.418873944501043	0.138801893089365	Inf	0.447475152649641	3.88344507478081	0.0339049676797033	0.198586239266834	1	6.03890657947316	0.122450970826422	0.999806763202342	1	1	0.110472967481382	0.485714285714286	1	1	126	104	0
"TCGA-IB-A5SQ-01A-11D-A32N-08"	0	0	0	0	98	0	8	22	30	68	2788	0	5	0	5	623	0	3	3	6	646	1	3	32	36	778	1	2	18	21	741	1	0	3	4	90	0.0408163265306122	0.19047619047619	0.121457489878543	1.56825396825397	0.0444444444444444	0	0	1	1	86	0.0102040816326531	0.0277777777777778	0.110539845758355	0.251291989664083	0.0116279069767442	0.0510204081632653	5	47	176	1343	0.734515453108989	1	1	0.811874801749278	0.303148106081857	Inf	0.829873251748252	4.31534090909091	0.219267102667912	0.499441733854688	1	7.61185643279018	0.690454545454545	0.84457825494111	1	1	0.663687663185848	0.206349206349206	0.65079365079365	1	93	63	0
"TCGA-IB-A5SS-01A-11D-A32N-08"	0	0	0	0	85	2	2	7	9	74	3034	1	2	0	3	657	1	1	1	3	622	3	1	30	34	888	3	10	21	34	867	1	2	0	3	95	0.0352941176470588	0.0882352941176471	0.10957324106113	0.805263157894737	0.0315789473684211	0	0	0	0	93	0	0	0.10472972972973	0	0	0.0117647058823529	1	56	188	1567	0.998311160255304	1	1	0.148920127967333	0.00749561624656946	Inf	0.163773796192609	1.55585106382979	0.49450906645806	0.793725518591558	1	1.66642511976869	0	1	1	1	0	1	1	1	84	73	0
"TCGA-IB-A5ST-01A-11D-A32N-08"	0	0	0	0	92	0	3	15	18	74	3034	1	2	0	3	708	1	6	1	8	646	1	1	42	44	832	0	2	17	19	848	0	1	0	1	84	0.0108695652173913	0.0526315789473684	0.0990566037735849	0.531328320802005	0.0119047619047619	1	0	0	1	87	0.0108695652173913	0.0227272727272727	0.104567307692308	0.217345872518286	0.0114942528735632	0.0108695652173913	1	59	171	1509	0.99826958630026	1	1	0.149651176517007	0.00753474571513312	Inf	0.16374269005848	9.82456140350877	0.10232004759072	0.362881263616556	1	Inf	0	1	1	1	0	1	1	1	91	73	0
"TCGA-IB-A6UF-01A-23D-A33T-08"	0	0	0	0	133	0	5	17	22	111	4551	4	5	0	9	965	0	3	2	5	1019	3	2	59	64	1246	3	3	27	33	1321	0	0	1	1	158	0.0075187969924812	0.0303030303030303	0.119606358819076	0.253356348293057	0.00632911392405063	1	0	1	2	124	0.0150375939849624	0.03125	0.0995184590690209	0.314012096774194	0.0161290322580645	0.0225563909774436	3	89	282	2285	0.998115931699304	1	1	0.273212191737117	0.0727124054576476	Inf	0.296831637372803	1.51713947990544	0.503338133740988	0.793725518591558	1	1.62019169438014	0.211693880917038	0.999416913978608	1	1	0.19299066062656	1	1	1	130	108	0
"TCGA-IB-A6UG-01A-32D-A33T-08"	0	0	0	0	144	0	2	13	15	129	5289	2	3	0	5	1094	2	6	2	10	1123	2	6	56	64	1601	3	5	42	50	1471	0	1	1	2	155	0.0138888888888889	0.04	0.105370496261047	0.379612903225806	0.0129032258064516	1	0	0	1	163	0.00694444444444444	0.015625	0.101811367895066	0.15347009202454	0.00613496932515337	0.0138888888888889	2	101	318	2754	0.999810141256448	1	1	0.17154282862319	0.0299796675409174	Inf	0.187580142883312	1.93207547169811	0.421677073543563	0.72036500063692	1	2.16436450263797	0.0985752791682711	0.999974210493047	1	1	0.0893113599114475	1	1	1	142	127	0
"TCGA-LB-A7SX-01A-11D-A33T-08"	0	0	0	0	206	0	3	22	25	181	7421	0	6	5	11	1720	3	6	2	11	1741	7	12	70	89	2012	9	9	52	70	1948	3	2	14	19	249	0.0922330097087379	0.271428571428571	0.12782340862423	2.12346528973035	0.0763052208835341	5	4	22	31	269	0.150485436893204	0.348314606741573	0.133697813121272	2.60523787644626	0.115241635687732	0.213592233009709	44	94	518	3442	1.88111482817057e-08	7.71257079549934e-07	7.71257079549934e-07	3.10911705799004	2.23075740143574	Inf	2.43746852442505	3.82239382239382	0.000432082923254594	0.0073888716254614	0.0177153998534384	6.63938978239805	2.25583897715045	2.42173911792546e-06	9.92913038349439e-05	9.92913038349439e-05	2.78057870888212	2.1911071371125e-08	4.49176963108063e-07	8.98353926216125e-07	162	137	26
"TCGA-OE-A75W-01A-12D-A32N-08"	0	0	0	0	212	2	0	24	24	186	7626	5	7	1	13	1777	3	3	2	8	1698	7	10	73	90	2044	8	9	58	75	2107	6	2	9	17	240	0.080188679245283	0.226666666666667	0.11390602752729	1.98994444444444	0.0708333333333333	3	2	9	14	243	0.0660377358490566	0.155555555555556	0.118884540117417	1.30845907636031	0.0576131687242798	0.127358490566038	27	119	483	3668	0.0115474843399333	0.157815619312422	0.473446857937265	1.72278758264305	1.16241055768712	Inf	1.58933889219774	5.15652173913043	1.08231352232951e-05	0.000443748544155099	0.000443748544155099	11.3814678773843	1.18088284102224	0.267312935538451	1	1	1.20963187444791	0.0395457918265848	0.270229577481663	1	185	159	0
"TCGA-Q3-A5QY-01A-12D-A32N-08"	0	0	0	0	83	0	3	17	20	63	2583	1	4	0	5	592	2	5	0	7	620	0	2	21	23	680	1	3	24	28	691	0	1	0	1	99	0.0120481927710843	0.0357142857142857	0.143270622286541	0.249278499278499	0.0101010101010101	0	0	0	0	73	0	0	0.107352941176471	0	0	0	0	46	172	1199	1	1	1	0	0	Inf	0	0	1	1	1	0	0	1	1	1	0	1	1	1	83	63	0
"TCGA-RB-A7B8-01A-12D-A33T-08"	0	0	0	0	138	0	4	15	19	119	4879	4	7	2	13	1128	0	2	1	3	1072	1	3	53	57	1306	2	3	41	46	1373	1	0	0	1	160	0.0072463768115942	0.0217391304347826	0.116533139111435	0.186548913043478	0.00625	0	0	2	2	162	0.0144927536231884	0.0350877192982456	0.124042879019908	0.282867662984622	0.0123456790123457	0.0217391304347826	3	94	322	2357	0.999535105191584	1	1	0.233685705282524	0.0622898027149608	Inf	0.257315745661779	2.77329192546584	0.319636600236067	0.655255030483937	1	3.65723676233182	0.177018633540373	0.999904782377962	1	1	0.159182857315132	1	1	1	135	116	0
"TCGA-US-A776-01A-13D-A33T-08"	0	0	0	0	197	0	5	29	34	163	6683	5	7	3	15	1440	6	7	3	16	1552	4	3	61	68	1819	4	13	47	64	1872	0	3	2	5	219	0.0253807106598985	0.078125	0.116987179487179	0.667808219178082	0.0228310502283105	1	1	4	6	220	0.0304568527918782	0.0882352941176471	0.120945574491479	0.729545454545455	0.0272727272727273	0.0355329949238579	7	109	439	3252	0.987433710446346	1	1	0.47579884764839	0.217328127963776	Inf	0.507363914853507	1.05096810933941	0.637293154858012	0.93317926247066	1	1.05824890052988	0.467096937484181	0.990943287382406	1	1	0.435819146924397	0.0634674922600621	0.325270897832818	1	190	156	0
"TCGA-US-A779-01A-11D-A32N-08"	0	0	0	0	101	0	4	12	16	85	3485	3	2	1	6	736	0	5	1	6	791	2	4	33	39	980	2	3	29	34	978	1	0	1	2	113	0.0198019801980198	0.0588235294117647	0.115541922290389	0.509109838625716	0.0176991150442478	0	2	0	2	107	0.0198019801980198	0.0512820512820513	0.109183673469388	0.469686077162713	0.0186915887850467	0.0198019801980198	2	64	220	1738	0.996139533578593	1	1	0.246977542170764	0.042714768124828	Inf	0.26969696969697	2.225	0.380230400881909	0.72036500063692	1	2.63148497229455	0.143548387096774	0.999325316366435	1	1	0.129571678021424	1	1	1	99	83	0
"TCGA-US-A77E-01A-11D-A32N-08"	0	0	0	0	126	0	3	14	17	109	4469	3	5	3	11	916	0	3	1	4	1035	2	5	49	56	1281	2	3	33	38	1237	0	1	2	3	148	0.0238095238095238	0.0789473684210526	0.119644300727567	0.659850640113798	0.0202702702702703	0	0	2	2	128	0.0158730158730159	0.0357142857142857	0.0999219359875098	0.357421875	0.015625	0.0317460317460317	4	82	276	2242	0.987365006011263	1	1	0.396352681090341	0.131543494963412	Inf	0.424334344455679	0	1	1	1	0	0.44503358077059	0.982496066878077	1	1	0.416674665038648	0.0476190476190476	0.27891156462585	1	122	105	0
"TCGA-US-A77G-01A-11D-A32N-08"	0	0	0	0	115	0	5	14	19	96	3936	1	4	1	6	891	1	1	2	4	882	2	3	52	57	1085	4	5	20	29	1078	0	0	1	1	119	0.00869565217391304	0.0344827586206897	0.11038961038961	0.31237322515213	0.00840336134453781	0	0	1	1	115	0.00869565217391304	0.0175438596491228	0.105990783410138	0.165522501906941	0.00869565217391304	0.0173913043478261	2	76	234	1929	0.998474561420647	1	1	0.217021479304297	0.0376795749549444	Inf	0.237015121630506	0	1	1	1	0	0.256766381766382	0.997230776823472	1	1	0.235620921370799	0.333333333333333	0.976190476190475	1	113	94	0
"TCGA-US-A77J-01A-11D-A32N-08"	0	0	0	0	73	0	1	15	16	57	2337	0	0	0	0	486	2	2	0	4	518	0	0	33	33	659	0	0	20	20	674	0	0	0	0	66	0	0	0.0979228486646884	0	0	0	0	0	0	71	0	0	0.107738998482549	0	0	0	0	53	137	1196	1	1	1	0	0	Inf	0	NA	1	1	1	0	0	1	1	1	0	1	1	1	73	57	0
"Totals"	0	0	0	0	25372	162	257	912	1169	24041	985681	162	1213	647	2022	229340	160	1182	655	1997	231885	122	2341	7568	10031	260754	122	2508	7361	9991	263702	36	566	433	1035	33354	0.0407930001576541	0.103593233910519	0.126483682338397	0.819024493873952	0.0310307609282245	36	516	484	1036	32422	0.0408324136843765	0.103279832519191	0.124339415694486	0.830628260092191	0.0319536117451113	0.038979977928425	989	14184	65776	458680	1	NA	NA	0.486229931870575	0.460043247218709	Inf	0.519716413325127	2.3527959772063	1.93681007887177e-12	NA	NA	2.91907718394149	0.489756508871579	1	NA	NA	0.456363407748022	4.10549144297125e-237	NA	NA	24383	23052	NA
