Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D5V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D21V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D1V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D7V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D23V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D11V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D15V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D6V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D7V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D27V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D1V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D28V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D20V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D14V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D16V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D11V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D4V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D18V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D10V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D18V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D11V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D20V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D15V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D11V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D23V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D7V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D1V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D4V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D7V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D28V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D10V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D6V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D18V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D5V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D1V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D14V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D16V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D27V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D21V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D18V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	all_lesions.conf_99.txt	gdac.broadinstitute.org_PCPG-TP.CopyNumber_Gistic2.Level_4.2014101700.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D5V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:23	Correlate_Clinical_vs_CopyNumber_Focal_2014101700	D21V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2014101700.0.0	yes
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