[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTPCPG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/11589218/PCPG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/11548818/transformed.cor.cli.txt"

nPatients in clinical file=179, in cluster file=162, common to both=162
[1]  28 162
[1] "AMP PEAK 1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          132 
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          132 
[1] "AMP PEAK 2(4Q25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE 
                         6                        156 
  AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE 
                         6                        156 
[1] "AMP PEAK 3(4Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE 
                          13                          149 
  AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE 
                          13                          149 
[1] "AMP PEAK 4(11P15.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE 
                            8                           154 
  AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE 
                            8                           154 
[1] "AMP PEAK 5(12Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE 
                           16                           146 
  AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE 
                           16                           146 
[1] "AMP PEAK 6(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE 
                           10                           152 
  AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE 
                           10                           152 
[1] "AMP PEAK 7(17Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE 
                            16                            146 
  AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE 
                            16                            146 
[1] "DEL PEAK  1(1P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE 
                        113                          49 
  DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE 
                        113                          49 
[1] "DEL PEAK  2(1Q42.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE 
                            18                            144 
  DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE 
                            18                            144 
[1] "DEL PEAK  3(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE 
                           64                            98 
  DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE 
                           64                            98 
[1] "DEL PEAK  4(3Q26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE 
                           93                            69 
  DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE 
                           93                            69 
[1] "DEL PEAK  5(4Q28.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE 
                           10                           152 
  DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE 
                           10                           152 
[1] "DEL PEAK  6(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                         12                         150 
  DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE 
                         12                         150 
[1] "DEL PEAK  7(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE 
                           10                           152 
  DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE 
                           10                           152 
[1] "DEL PEAK  8(6Q16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE 
                           24                           138 
  DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE 
                           24                           138 
[1] "DEL PEAK  9(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE 
                         25                         137 
  DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE 
                         25                         137 
[1] "DEL PEAK 10(8Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE 
                           13                           149 
  DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE 
                           13                           149 
[1] "DEL PEAK 11(9P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE 
                           15                           147 
  DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE 
                           15                           147 
[1] "DEL PEAK 12(9Q21.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE 
                            14                            148 
  DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE 
                            14                            148 
[1] "DEL PEAK 13(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE 
                            58                            104 
  DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE 
                            58                            104 
[1] "DEL PEAK 14(11Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE 
                            48                            114 
  DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE 
                            48                            114 
[1] "DEL PEAK 15(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE 
                              8                             154 
  DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE 
                              8                             154 
[1] "DEL PEAK 16(13Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE 
                             8                            154 
  DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE 
                             8                            154 
[1] "DEL PEAK 17(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           5                          157 
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           5                          157 
[1] "DEL PEAK 18(17P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE 
                            64                             98 
  DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE 
                            64                             98 
[1] "DEL PEAK 19(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE 
                            42                            120 
  DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE 
                            42                            120 
[1] "DEL PEAK 20(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE 
                             65                              97 
  DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE 
                             65                              97 
[1] "DEL PEAK 21(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE 
                           46                           116 
  DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE 
                           46                           116 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 162 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 162 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q21.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       10      6     14
  AMP PEAK 1(1Q21.3) WILD-TYPE     50     57     25
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         10                           50
  CLUS_2                          6                           57
  CLUS_3                         14                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        9     15      6
  AMP PEAK 1(1Q21.3) WILD-TYPE     31     63     38
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          9                           31
  CLUS_2                         15                           63
  CLUS_3                          6                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        8     12      8      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     25     52     36     19
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          8                           25
  CLUS_2                         12                           52
  CLUS_3                          8                           36
  CLUS_4                          2                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        6     12      9      3
  AMP PEAK 1(1Q21.3) WILD-TYPE     28     52     34     18
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          6                           28
  CLUS_2                         12                           52
  CLUS_3                          9                           34
  CLUS_4                          3                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       11     11      8
  AMP PEAK 1(1Q21.3) WILD-TYPE     54     47     31
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         11                           54
  CLUS_2                         11                           47
  CLUS_3                          8                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED       15      9      4      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     51     45     14     22
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         15                           51
  CLUS_2                          9                           45
  CLUS_3                          4                           14
  CLUS_4                          2                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q21.3) MUTATED        8     13      1      5      3
  AMP PEAK 1(1Q21.3) WILD-TYPE     26     45     10     30     20
D1V7, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          8                           26
  CLUS_2                         13                           45
  CLUS_3                          1                           10
  CLUS_4                          5                           30
  CLUS_5                          3                           20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED       14     10      4      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     57     43     14     17
D1V8, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         14                           57
  CLUS_2                         10                           43
  CLUS_3                          4                           14
  CLUS_4                          2                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(4Q25) MUTATION ANALYSIS
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        3      2      1
  AMP PEAK 2(4Q25) WILD-TYPE     57     61     38
D2V1, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        3                         57
  CLUS_2                        2                         61
  CLUS_3                        1                         38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        1      4      1
  AMP PEAK 2(4Q25) WILD-TYPE     39     74     43
D2V2, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        1                         39
  CLUS_2                        4                         74
  CLUS_3                        1                         43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        2      2      0      2
  AMP PEAK 2(4Q25) WILD-TYPE     31     62     44     19
D2V3, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         31
  CLUS_2                        2                         62
  CLUS_3                        0                         44
  CLUS_4                        2                         19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        2      3      0      1
  AMP PEAK 2(4Q25) WILD-TYPE     32     61     43     20
D2V4, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         32
  CLUS_2                        3                         61
  CLUS_3                        0                         43
  CLUS_4                        1                         20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        2      3      1
  AMP PEAK 2(4Q25) WILD-TYPE     63     55     38
D2V5, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         63
  CLUS_2                        3                         55
  CLUS_3                        1                         38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        2      3      1      0
  AMP PEAK 2(4Q25) WILD-TYPE     64     51     17     24
D2V6, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         64
  CLUS_2                        3                         51
  CLUS_3                        1                         17
  CLUS_4                        0                         24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(4Q25) MUTATED        3      3      0      0      0
  AMP PEAK 2(4Q25) WILD-TYPE     31     55     11     35     23
D2V7, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        3                         31
  CLUS_2                        3                         55
  CLUS_3                        0                         11
  CLUS_4                        0                         35
  CLUS_5                        0                         23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        4      1      1      0
  AMP PEAK 2(4Q25) WILD-TYPE     67     52     17     19
D2V8, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        4                         67
  CLUS_2                        1                         52
  CLUS_3                        1                         17
  CLUS_4                        0                         19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(4Q31.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED       10      3      0
  AMP PEAK 3(4Q31.1) WILD-TYPE     50     60     39
D3V1, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                         10                           50
  CLUS_2                          3                           60
  CLUS_3                          0                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED        0      8      5
  AMP PEAK 3(4Q31.1) WILD-TYPE     40     70     39
D3V2, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          0                           40
  CLUS_2                          8                           70
  CLUS_3                          5                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        1      5      5      2
  AMP PEAK 3(4Q31.1) WILD-TYPE     32     59     39     19
D3V3, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          1                           32
  CLUS_2                          5                           59
  CLUS_3                          5                           39
  CLUS_4                          2                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        7      5      0      1
  AMP PEAK 3(4Q31.1) WILD-TYPE     27     59     43     20
D3V4, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          7                           27
  CLUS_2                          5                           59
  CLUS_3                          0                           43
  CLUS_4                          1                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED        3      6      4
  AMP PEAK 3(4Q31.1) WILD-TYPE     62     52     35
D3V5, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          3                           62
  CLUS_2                          6                           52
  CLUS_3                          4                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        5      5      3      0
  AMP PEAK 3(4Q31.1) WILD-TYPE     61     49     15     24
D3V6, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          5                           61
  CLUS_2                          5                           49
  CLUS_3                          3                           15
  CLUS_4                          0                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(4Q31.1) MUTATED        6      5      1      1      0
  AMP PEAK 3(4Q31.1) WILD-TYPE     28     53     10     34     23
D3V7, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          6                           28
  CLUS_2                          5                           53
  CLUS_3                          1                           10
  CLUS_4                          1                           34
  CLUS_5                          0                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        6      4      3      0
  AMP PEAK 3(4Q31.1) WILD-TYPE     65     49     15     19
D3V8, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          6                           65
  CLUS_2                          4                           49
  CLUS_3                          3                           15
  CLUS_4                          0                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(11P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        6      1      1
  AMP PEAK 4(11P15.2) WILD-TYPE     54     62     38
D4V1, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           6                            54
  CLUS_2                           1                            62
  CLUS_3                           1                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        1      7      0
  AMP PEAK 4(11P15.2) WILD-TYPE     39     71     44
D4V2, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           7                            71
  CLUS_3                           0                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        1      6      1      0
  AMP PEAK 4(11P15.2) WILD-TYPE     32     58     43     21
D4V3, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           6                            58
  CLUS_3                           1                            43
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        2      6      0      0
  AMP PEAK 4(11P15.2) WILD-TYPE     32     58     43     21
D4V4, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           6                            58
  CLUS_3                           0                            43
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        2      5      1
  AMP PEAK 4(11P15.2) WILD-TYPE     63     53     38
D4V5, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           5                            53
  CLUS_3                           1                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        2      5      0      1
  AMP PEAK 4(11P15.2) WILD-TYPE     64     49     18     23
D4V6, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           2                            64
  CLUS_2                           5                            49
  CLUS_3                           0                            18
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(11P15.2) MUTATED        1      5      1      1      0
  AMP PEAK 4(11P15.2) WILD-TYPE     33     53     10     34     23
D4V7, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                           5                            53
  CLUS_3                           1                            10
  CLUS_4                           1                            34
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        5      2      0      1
  AMP PEAK 4(11P15.2) WILD-TYPE     66     51     18     18
D4V8, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           5                            66
  CLUS_2                           2                            51
  CLUS_3                           0                            18
  CLUS_4                           1                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(12Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED        3      5      8
  AMP PEAK 5(12Q13.3) WILD-TYPE     57     58     31
D5V1, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           3                            57
  CLUS_2                           5                            58
  CLUS_3                           8                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED        6      4      6
  AMP PEAK 5(12Q13.3) WILD-TYPE     34     74     38
D5V2, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                           4                            74
  CLUS_3                           6                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED        5      5      5      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     28     59     39     20
D5V3, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           5                            59
  CLUS_3                           5                            39
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED        5      5      5      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     29     59     38     20
D5V4, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           5                            29
  CLUS_2                           5                            59
  CLUS_3                           5                            38
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED       11      4      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     54     54     38
D5V5, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                           4                            54
  CLUS_3                           1                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED       10      4      0      2
  AMP PEAK 5(12Q13.3) WILD-TYPE     56     50     18     22
D5V6, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                          10                            56
  CLUS_2                           4                            50
  CLUS_3                           0                            18
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(12Q13.3) MUTATED        3      6      0      7      0
  AMP PEAK 5(12Q13.3) WILD-TYPE     31     52     11     28     23
D5V7, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           6                            52
  CLUS_3                           0                            11
  CLUS_4                           7                            28
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED        7      8      0      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     64     45     18     18
D5V8, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           7                            64
  CLUS_2                           8                            45
  CLUS_3                           0                            18
  CLUS_4                           1                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(14Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        1      3      6
  AMP PEAK 6(14Q24.3) WILD-TYPE     59     60     33
D6V1, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           1                            59
  CLUS_2                           3                            60
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        5      4      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     35     74     43
D6V2, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           5                            35
  CLUS_2                           4                            74
  CLUS_3                           1                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        3      3      3      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     30     61     41     20
D6V3, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           3                            61
  CLUS_3                           3                            41
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        5      3      2      0
  AMP PEAK 6(14Q24.3) WILD-TYPE     29     61     41     21
D6V4, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           5                            29
  CLUS_2                           3                            61
  CLUS_3                           2                            41
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        6      2      2
  AMP PEAK 6(14Q24.3) WILD-TYPE     59     56     37
D6V5, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                           2                            56
  CLUS_3                           2                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        6      2      1      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     60     52     17     23
D6V6, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           6                            60
  CLUS_2                           2                            52
  CLUS_3                           1                            17
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(14Q24.3) MUTATED        3      3      0      4      0
  AMP PEAK 6(14Q24.3) WILD-TYPE     31     55     11     31     23
D6V7, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           3                            55
  CLUS_3                           0                            11
  CLUS_4                           4                            31
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        5      4      1      0
  AMP PEAK 6(14Q24.3) WILD-TYPE     66     49     17     19
D6V8, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           5                            66
  CLUS_2                           4                            49
  CLUS_3                           1                            17
  CLUS_4                           0                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(17Q21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        8      5      3
  AMP PEAK 7(17Q21.31) WILD-TYPE     52     58     36
D7V1, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            8                             52
  CLUS_2                            5                             58
  CLUS_3                            3                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        3      8      5
  AMP PEAK 7(17Q21.31) WILD-TYPE     37     70     39
D7V2, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            3                             37
  CLUS_2                            8                             70
  CLUS_3                            5                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED        3      5      7      1
  AMP PEAK 7(17Q21.31) WILD-TYPE     30     59     37     20
D7V3, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            5                             59
  CLUS_3                            7                             37
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED       10      5      1      0
  AMP PEAK 7(17Q21.31) WILD-TYPE     24     59     42     21
D7V4, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                            5                             59
  CLUS_3                            1                             42
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        8      5      3
  AMP PEAK 7(17Q21.31) WILD-TYPE     57     53     36
D7V5, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                            5                             53
  CLUS_3                            3                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED       10      4      2      0
  AMP PEAK 7(17Q21.31) WILD-TYPE     56     50     16     24
D7V6, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                           10                             56
  CLUS_2                            4                             50
  CLUS_3                            2                             16
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(17Q21.31) MUTATED        6      5      3      1      1
  AMP PEAK 7(17Q21.31) WILD-TYPE     28     53      8     34     22
D7V7, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                            5                             53
  CLUS_3                            3                              8
  CLUS_4                            1                             34
  CLUS_5                            1                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED        7      7      2      0
  AMP PEAK 7(17Q21.31) WILD-TYPE     64     46     16     19
D7V8, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            7                             64
  CLUS_2                            7                             46
  CLUS_3                            2                             16
  CLUS_4                            0                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  1(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       54     27     32
  DEL PEAK  1(1P12) WILD-TYPE      6     36      7
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        54                           6
  CLUS_2                        27                          36
  CLUS_3                        32                           7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       24     68     21
  DEL PEAK  1(1P12) WILD-TYPE     16     10     23
D8V2, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        24                          16
  CLUS_2                        68                          10
  CLUS_3                        21                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       24     58     21     10
  DEL PEAK  1(1P12) WILD-TYPE      9      6     23     11
D8V3, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        24                           9
  CLUS_2                        58                           6
  CLUS_3                        21                          23
  CLUS_4                        10                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       19     58     27      9
  DEL PEAK  1(1P12) WILD-TYPE     15      6     16     12
D8V4, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        19                          15
  CLUS_2                        58                           6
  CLUS_3                        27                          16
  CLUS_4                         9                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       39     51     23
  DEL PEAK  1(1P12) WILD-TYPE     26      7     16
D8V5, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        39                          26
  CLUS_2                        51                           7
  CLUS_3                        23                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       41     46     12     14
  DEL PEAK  1(1P12) WILD-TYPE     25      8      6     10
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        41                          25
  CLUS_2                        46                           8
  CLUS_3                        12                           6
  CLUS_4                        14                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P12) MUTATED       22     50      8     21     12
  DEL PEAK  1(1P12) WILD-TYPE     12      8      3     14     11
D8V7, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        22                          12
  CLUS_2                        50                           8
  CLUS_3                         8                           3
  CLUS_4                        21                          14
  CLUS_5                        12                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       58     34     12      9
  DEL PEAK  1(1P12) WILD-TYPE     13     19      6     10
D8V8, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        58                          13
  CLUS_2                        34                          19
  CLUS_3                        12                           6
  CLUS_4                         9                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  2(1Q42.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        2      8      8
  DEL PEAK  2(1Q42.13) WILD-TYPE     58     55     31
D9V1, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            2                             58
  CLUS_2                            8                             55
  CLUS_3                            8                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED        8      6      4
  DEL PEAK  2(1Q42.13) WILD-TYPE     32     72     40
D9V2, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            8                             32
  CLUS_2                            6                             72
  CLUS_3                            4                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q42.13) MUTATED        8      3      6      1
  DEL PEAK  2(1Q42.13) WILD-TYPE     25     61     38     20
D9V3, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                            3                             61
  CLUS_3                            6                             38
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q42.13) MUTATED        6      4      7      1
  DEL PEAK  2(1Q42.13) WILD-TYPE     28     60     36     20
D9V4, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                            4                             60
  CLUS_3                            7                             36
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q42.13) MUTATED       10      4      4
  DEL PEAK  2(1Q42.13) WILD-TYPE     55     54     35
D9V5, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                           10                             55
  CLUS_2                            4                             54
  CLUS_3                            4                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q42.13) MUTATED       10      4      1      3
  DEL PEAK  2(1Q42.13) WILD-TYPE     56     50     17     21
D9V6, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                           10                             56
  CLUS_2                            4                             50
  CLUS_3                            1                             17
  CLUS_4                            3                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q42.13) MUTATED        2      5      0      9      2
  DEL PEAK  2(1Q42.13) WILD-TYPE     32     53     11     26     21
D9V7, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                            5                             53
  CLUS_3                            0                             11
  CLUS_4                            9                             26
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q42.13) MUTATED        6     10      1      1
  DEL PEAK  2(1Q42.13) WILD-TYPE     65     43     17     18
D9V8, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) MUTATED DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                           10                             43
  CLUS_3                            1                             17
  CLUS_4                            1                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  3(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P24.1) MUTATED       15     25     24
  DEL PEAK  3(3P24.1) WILD-TYPE     45     38     15
D10V1, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          15                            45
  CLUS_2                          25                            38
  CLUS_3                          24                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P24.1) MUTATED       23     22     19
  DEL PEAK  3(3P24.1) WILD-TYPE     17     56     25
D10V2, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          23                            17
  CLUS_2                          22                            56
  CLUS_3                          19                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       18     15     27      4
  DEL PEAK  3(3P24.1) WILD-TYPE     15     49     17     17
D10V3, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          18                            15
  CLUS_2                          15                            49
  CLUS_3                          27                            17
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       12     17     31      4
  DEL PEAK  3(3P24.1) WILD-TYPE     22     47     12     17
D10V4, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                          17                            47
  CLUS_3                          31                            12
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P24.1) MUTATED       39     19      6
  DEL PEAK  3(3P24.1) WILD-TYPE     26     39     33
D10V5, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          39                            26
  CLUS_2                          19                            39
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       39     15      6      4
  DEL PEAK  3(3P24.1) WILD-TYPE     27     39     12     20
D10V6, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          39                            27
  CLUS_2                          15                            39
  CLUS_3                           6                            12
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(3P24.1) MUTATED       12     15      2     29      6
  DEL PEAK  3(3P24.1) WILD-TYPE     22     43      9      6     17
D10V7, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                          15                            43
  CLUS_3                           2                             9
  CLUS_4                          29                             6
  CLUS_5                           6                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P24.1) MUTATED       18     36      6      4
  DEL PEAK  3(3P24.1) WILD-TYPE     53     17     12     15
D10V8, multiclass
        clus
vv       DEL PEAK  3(3P24.1) MUTATED DEL PEAK  3(3P24.1) WILD-TYPE
  CLUS_1                          18                            53
  CLUS_2                          36                            17
  CLUS_3                           6                            12
  CLUS_4                           4                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  4(3Q26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q26.1) MUTATED       40     22     31
  DEL PEAK  4(3Q26.1) WILD-TYPE     20     41      8
D11V1, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          40                            20
  CLUS_2                          22                            41
  CLUS_3                          31                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q26.1) MUTATED       24     47     22
  DEL PEAK  4(3Q26.1) WILD-TYPE     16     31     22
D11V2, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          47                            31
  CLUS_3                          22                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED       20     44     22      7
  DEL PEAK  4(3Q26.1) WILD-TYPE     13     20     22     14
D11V3, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          44                            20
  CLUS_3                          22                            22
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED        6     47     33      7
  DEL PEAK  4(3Q26.1) WILD-TYPE     28     17     10     14
D11V4, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                           6                            28
  CLUS_2                          47                            17
  CLUS_3                          33                            10
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3Q26.1) MUTATED       39     39     15
  DEL PEAK  4(3Q26.1) WILD-TYPE     26     19     24
D11V5, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          39                            26
  CLUS_2                          39                            19
  CLUS_3                          15                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED       39     38      5     11
  DEL PEAK  4(3Q26.1) WILD-TYPE     27     16     13     13
D11V6, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          39                            27
  CLUS_2                          38                            16
  CLUS_3                           5                            13
  CLUS_4                          11                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3Q26.1) MUTATED       12     41      5     23     12
  DEL PEAK  4(3Q26.1) WILD-TYPE     22     17      6     12     11
D11V7, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          12                            22
  CLUS_2                          41                            17
  CLUS_3                           5                             6
  CLUS_4                          23                            12
  CLUS_5                          12                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3Q26.1) MUTATED       44     36      5      8
  DEL PEAK  4(3Q26.1) WILD-TYPE     27     17     13     11
D11V8, multiclass
        clus
vv       DEL PEAK  4(3Q26.1) MUTATED DEL PEAK  4(3Q26.1) WILD-TYPE
  CLUS_1                          44                            27
  CLUS_2                          36                            17
  CLUS_3                           5                            13
  CLUS_4                           8                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  5(4Q28.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q28.3) MUTATED        1      4      5
  DEL PEAK  5(4Q28.3) WILD-TYPE     59     59     34
D12V1, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           1                            59
  CLUS_2                           4                            59
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q28.3) MUTATED        1      4      5
  DEL PEAK  5(4Q28.3) WILD-TYPE     39     74     39
D12V2, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           4                            74
  CLUS_3                           5                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q28.3) MUTATED        0      2      7      1
  DEL PEAK  5(4Q28.3) WILD-TYPE     33     62     37     20
D12V3, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           2                            62
  CLUS_3                           7                            37
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q28.3) MUTATED        2      3      5      0
  DEL PEAK  5(4Q28.3) WILD-TYPE     32     61     38     21
D12V4, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           3                            61
  CLUS_3                           5                            38
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q28.3) MUTATED        6      2      2
  DEL PEAK  5(4Q28.3) WILD-TYPE     59     56     37
D12V5, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                           2                            56
  CLUS_3                           2                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q28.3) MUTATED        6      2      1      1
  DEL PEAK  5(4Q28.3) WILD-TYPE     60     52     17     23
D12V6, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           6                            60
  CLUS_2                           2                            52
  CLUS_3                           1                            17
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(4Q28.3) MUTATED        2      2      0      5      1
  DEL PEAK  5(4Q28.3) WILD-TYPE     32     56     11     30     22
D12V7, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            56
  CLUS_3                           0                            11
  CLUS_4                           5                            30
  CLUS_5                           1                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(4Q28.3) MUTATED        3      6      1      0
  DEL PEAK  5(4Q28.3) WILD-TYPE     68     47     17     19
D12V8, multiclass
        clus
vv       DEL PEAK  5(4Q28.3) MUTATED DEL PEAK  5(4Q28.3) WILD-TYPE
  CLUS_1                           3                            68
  CLUS_2                           6                            47
  CLUS_3                           1                            17
  CLUS_4                           0                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  6(5Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q15) MUTATED        3      5      4
  DEL PEAK  6(5Q15) WILD-TYPE     57     58     35
D13V1, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         3                          57
  CLUS_2                         5                          58
  CLUS_3                         4                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q15) MUTATED        3      6      3
  DEL PEAK  6(5Q15) WILD-TYPE     37     72     41
D13V2, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         3                          37
  CLUS_2                         6                          72
  CLUS_3                         3                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q15) MUTATED        2      5      4      1
  DEL PEAK  6(5Q15) WILD-TYPE     31     59     40     20
D13V3, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         5                          59
  CLUS_3                         4                          40
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q15) MUTATED        3      5      3      1
  DEL PEAK  6(5Q15) WILD-TYPE     31     59     40     20
D13V4, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         3                          31
  CLUS_2                         5                          59
  CLUS_3                         3                          40
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q15) MUTATED        4      5      3
  DEL PEAK  6(5Q15) WILD-TYPE     61     53     36
D13V5, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         4                          61
  CLUS_2                         5                          53
  CLUS_3                         3                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q15) MUTATED        4      5      3      0
  DEL PEAK  6(5Q15) WILD-TYPE     62     49     15     24
D13V6, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         4                          62
  CLUS_2                         5                          49
  CLUS_3                         3                          15
  CLUS_4                         0                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(5Q15) MUTATED        6      3      0      2      1
  DEL PEAK  6(5Q15) WILD-TYPE     28     55     11     33     22
D13V7, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         6                          28
  CLUS_2                         3                          55
  CLUS_3                         0                          11
  CLUS_4                         2                          33
  CLUS_5                         1                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q15) MUTATED        5      4      3      0
  DEL PEAK  6(5Q15) WILD-TYPE     66     49     15     19
D13V8, multiclass
        clus
vv       DEL PEAK  6(5Q15) MUTATED DEL PEAK  6(5Q15) WILD-TYPE
  CLUS_1                         5                          66
  CLUS_2                         4                          49
  CLUS_3                         3                          15
  CLUS_4                         0                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  7(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        0      5      5
  DEL PEAK  7(6P12.3) WILD-TYPE     60     58     34
D14V1, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           0                            60
  CLUS_2                           5                            58
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        2      3      5
  DEL PEAK  7(6P12.3) WILD-TYPE     38     75     39
D14V2, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           3                            75
  CLUS_3                           5                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P12.3) MUTATED        1      1      4      4
  DEL PEAK  7(6P12.3) WILD-TYPE     32     63     40     17
D14V3, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           1                            63
  CLUS_3                           4                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P12.3) MUTATED        2      2      2      4
  DEL PEAK  7(6P12.3) WILD-TYPE     32     62     41     17
D14V4, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           2                            62
  CLUS_3                           2                            41
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        3      2      5
  DEL PEAK  7(6P12.3) WILD-TYPE     62     56     34
D14V5, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           3                            62
  CLUS_2                           2                            56
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P12.3) MUTATED        3      2      1      4
  DEL PEAK  7(6P12.3) WILD-TYPE     63     52     17     20
D14V6, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           3                            63
  CLUS_2                           2                            52
  CLUS_3                           1                            17
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(6P12.3) MUTATED        2      3      0      3      2
  DEL PEAK  7(6P12.3) WILD-TYPE     32     55     11     32     21
D14V7, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                           3                            55
  CLUS_3                           0                            11
  CLUS_4                           3                            32
  CLUS_5                           2                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P12.3) MUTATED        2      3      1      4
  DEL PEAK  7(6P12.3) WILD-TYPE     69     50     17     15
D14V8, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           2                            69
  CLUS_2                           3                            50
  CLUS_3                           1                            17
  CLUS_4                           4                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  8(6Q16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q16.1) MUTATED       12      5      7
  DEL PEAK  8(6Q16.1) WILD-TYPE     48     58     32
D15V1, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                          12                            48
  CLUS_2                           5                            58
  CLUS_3                           7                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q16.1) MUTATED        2     16      6
  DEL PEAK  8(6Q16.1) WILD-TYPE     38     62     38
D15V2, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          16                            62
  CLUS_3                           6                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q16.1) MUTATED        1     15      4      4
  DEL PEAK  8(6Q16.1) WILD-TYPE     32     49     40     17
D15V3, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                          15                            49
  CLUS_3                           4                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q16.1) MUTATED        1     16      3      4
  DEL PEAK  8(6Q16.1) WILD-TYPE     33     48     40     17
D15V4, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                           1                            33
  CLUS_2                          16                            48
  CLUS_3                           3                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q16.1) MUTATED        4     14      6
  DEL PEAK  8(6Q16.1) WILD-TYPE     61     44     33
D15V5, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                          14                            44
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q16.1) MUTATED        4     15      1      4
  DEL PEAK  8(6Q16.1) WILD-TYPE     62     39     17     20
D15V6, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                           4                            62
  CLUS_2                          15                            39
  CLUS_3                           1                            17
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(6Q16.1) MUTATED        2     15      1      4      2
  DEL PEAK  8(6Q16.1) WILD-TYPE     32     43     10     31     21
D15V7, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                           2                            32
  CLUS_2                          15                            43
  CLUS_3                           1                            10
  CLUS_4                           4                            31
  CLUS_5                           2                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q16.1) MUTATED       15      4      1      4
  DEL PEAK  8(6Q16.1) WILD-TYPE     56     49     17     15
D15V8, multiclass
        clus
vv       DEL PEAK  8(6Q16.1) MUTATED DEL PEAK  8(6Q16.1) WILD-TYPE
  CLUS_1                          15                            56
  CLUS_2                           4                            49
  CLUS_3                           1                            17
  CLUS_4                           4                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  9(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P22) MUTATED       10      3     12
  DEL PEAK  9(8P22) WILD-TYPE     50     60     27
D16V1, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                        10                          50
  CLUS_2                         3                          60
  CLUS_3                        12                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P22) MUTATED        5     17      3
  DEL PEAK  9(8P22) WILD-TYPE     35     61     41
D16V2, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                        17                          61
  CLUS_3                         3                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(8P22) MUTATED        3     18      3      1
  DEL PEAK  9(8P22) WILD-TYPE     30     46     41     20
D16V3, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                         3                          30
  CLUS_2                        18                          46
  CLUS_3                         3                          41
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(8P22) MUTATED        5     17      2      1
  DEL PEAK  9(8P22) WILD-TYPE     29     47     41     20
D16V4, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                         5                          29
  CLUS_2                        17                          47
  CLUS_3                         2                          41
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8P22) MUTATED        8     13      4
  DEL PEAK  9(8P22) WILD-TYPE     57     45     35
D16V5, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                         8                          57
  CLUS_2                        13                          45
  CLUS_3                         4                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(8P22) MUTATED        8     13      2      2
  DEL PEAK  9(8P22) WILD-TYPE     58     41     16     22
D16V6, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                         8                          58
  CLUS_2                        13                          41
  CLUS_3                         2                          16
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(8P22) MUTATED        5     16      0      3      1
  DEL PEAK  9(8P22) WILD-TYPE     29     42     11     32     22
D16V7, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                         5                          29
  CLUS_2                        16                          42
  CLUS_3                         0                          11
  CLUS_4                         3                          32
  CLUS_5                         1                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(8P22) MUTATED       16      5      2      2
  DEL PEAK  9(8P22) WILD-TYPE     55     48     16     17
D16V8, multiclass
        clus
vv       DEL PEAK  9(8P22) MUTATED DEL PEAK  9(8P22) WILD-TYPE
  CLUS_1                        16                          55
  CLUS_2                         5                          48
  CLUS_3                         2                          16
  CLUS_4                         2                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 10(8Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8Q23.3) MUTATED        7      1      5
  DEL PEAK 10(8Q23.3) WILD-TYPE     53     62     34
D17V1, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           7                            53
  CLUS_2                           1                            62
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8Q23.3) MUTATED        4      6      3
  DEL PEAK 10(8Q23.3) WILD-TYPE     36     72     41
D17V2, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           4                            36
  CLUS_2                           6                            72
  CLUS_3                           3                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8Q23.3) MUTATED        4      7      1      1
  DEL PEAK 10(8Q23.3) WILD-TYPE     29     57     43     20
D17V3, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           4                            29
  CLUS_2                           7                            57
  CLUS_3                           1                            43
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8Q23.3) MUTATED        3      7      3      0
  DEL PEAK 10(8Q23.3) WILD-TYPE     31     57     40     21
D17V4, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           7                            57
  CLUS_3                           3                            40
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(8Q23.3) MUTATED        6      7      0
  DEL PEAK 10(8Q23.3) WILD-TYPE     59     51     39
D17V5, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                           7                            51
  CLUS_3                           0                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8Q23.3) MUTATED        7      5      1      0
  DEL PEAK 10(8Q23.3) WILD-TYPE     59     49     17     24
D17V6, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           7                            59
  CLUS_2                           5                            49
  CLUS_3                           1                            17
  CLUS_4                           0                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(8Q23.3) MUTATED        3      6      0      2      2
  DEL PEAK 10(8Q23.3) WILD-TYPE     31     52     11     33     21
D17V7, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           3                            31
  CLUS_2                           6                            52
  CLUS_3                           0                            11
  CLUS_4                           2                            33
  CLUS_5                           2                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(8Q23.3) MUTATED        9      3      1      0
  DEL PEAK 10(8Q23.3) WILD-TYPE     62     50     17     19
D17V8, multiclass
        clus
vv       DEL PEAK 10(8Q23.3) MUTATED DEL PEAK 10(8Q23.3) WILD-TYPE
  CLUS_1                           9                            62
  CLUS_2                           3                            50
  CLUS_3                           1                            17
  CLUS_4                           0                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 11(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P24.2) MUTATED        7      3      5
  DEL PEAK 11(9P24.2) WILD-TYPE     53     60     34
D18V1, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           7                            53
  CLUS_2                           3                            60
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P24.2) MUTATED        2     10      3
  DEL PEAK 11(9P24.2) WILD-TYPE     38     68     41
D18V2, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          10                            68
  CLUS_3                           3                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P24.2) MUTATED        1     10      4      0
  DEL PEAK 11(9P24.2) WILD-TYPE     32     54     40     21
D18V3, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                          10                            54
  CLUS_3                           4                            40
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P24.2) MUTATED        4      9      2      0
  DEL PEAK 11(9P24.2) WILD-TYPE     30     55     41     21
D18V4, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           9                            55
  CLUS_3                           2                            41
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(9P24.2) MUTATED        4      7      4
  DEL PEAK 11(9P24.2) WILD-TYPE     61     51     35
D18V5, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                           7                            51
  CLUS_3                           4                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P24.2) MUTATED        4      8      3      0
  DEL PEAK 11(9P24.2) WILD-TYPE     62     46     15     24
D18V6, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           4                            62
  CLUS_2                           8                            46
  CLUS_3                           3                            15
  CLUS_4                           0                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(9P24.2) MUTATED        4      7      1      3      0
  DEL PEAK 11(9P24.2) WILD-TYPE     30     51     10     32     23
D18V7, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           4                            30
  CLUS_2                           7                            51
  CLUS_3                           1                            10
  CLUS_4                           3                            32
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(9P24.2) MUTATED        8      4      3      0
  DEL PEAK 11(9P24.2) WILD-TYPE     63     49     15     19
D18V8, multiclass
        clus
vv       DEL PEAK 11(9P24.2) MUTATED DEL PEAK 11(9P24.2) WILD-TYPE
  CLUS_1                           8                            63
  CLUS_2                           4                            49
  CLUS_3                           3                            15
  CLUS_4                           0                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 12(9Q21.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9Q21.12) MUTATED        4      2      8
  DEL PEAK 12(9Q21.12) WILD-TYPE     56     61     31
D19V1, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            4                             56
  CLUS_2                            2                             61
  CLUS_3                            8                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9Q21.12) MUTATED        4      8      2
  DEL PEAK 12(9Q21.12) WILD-TYPE     36     70     42
D19V2, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                            8                             70
  CLUS_3                            2                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9Q21.12) MUTATED        3      8      3      0
  DEL PEAK 12(9Q21.12) WILD-TYPE     30     56     41     21
D19V3, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            8                             56
  CLUS_3                            3                             41
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9Q21.12) MUTATED        3      8      3      0
  DEL PEAK 12(9Q21.12) WILD-TYPE     31     56     40     21
D19V4, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            3                             31
  CLUS_2                            8                             56
  CLUS_3                            3                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(9Q21.12) MUTATED        6      6      2
  DEL PEAK 12(9Q21.12) WILD-TYPE     59     52     37
D19V5, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                            6                             52
  CLUS_3                            2                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9Q21.12) MUTATED        4      7      3      0
  DEL PEAK 12(9Q21.12) WILD-TYPE     62     47     15     24
D19V6, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            4                             62
  CLUS_2                            7                             47
  CLUS_3                            3                             15
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(9Q21.12) MUTATED        5      6      0      2      1
  DEL PEAK 12(9Q21.12) WILD-TYPE     29     52     11     33     22
D19V7, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            5                             29
  CLUS_2                            6                             52
  CLUS_3                            0                             11
  CLUS_4                            2                             33
  CLUS_5                            1                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(9Q21.12) MUTATED        6      5      3      0
  DEL PEAK 12(9Q21.12) WILD-TYPE     65     48     15     19
D19V8, multiclass
        clus
vv       DEL PEAK 12(9Q21.12) MUTATED DEL PEAK 12(9Q21.12) WILD-TYPE
  CLUS_1                            6                             65
  CLUS_2                            5                             48
  CLUS_3                            3                             15
  CLUS_4                            0                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 13(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11P15.4) MUTATED        2     39     17
  DEL PEAK 13(11P15.4) WILD-TYPE     58     24     22
D20V1, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                            2                             58
  CLUS_2                           39                             24
  CLUS_3                           17                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11P15.4) MUTATED       23     14     21
  DEL PEAK 13(11P15.4) WILD-TYPE     17     64     23
D20V2, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           23                             17
  CLUS_2                           14                             64
  CLUS_3                           21                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11P15.4) MUTATED       13     13     26      6
  DEL PEAK 13(11P15.4) WILD-TYPE     20     51     18     15
D20V3, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           13                             20
  CLUS_2                           13                             51
  CLUS_3                           26                             18
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11P15.4) MUTATED       11     10     31      6
  DEL PEAK 13(11P15.4) WILD-TYPE     23     54     12     15
D20V4, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           11                             23
  CLUS_2                           10                             54
  CLUS_3                           31                             12
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11P15.4) MUTATED       36     12     10
  DEL PEAK 13(11P15.4) WILD-TYPE     29     46     29
D20V5, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           36                             29
  CLUS_2                           12                             46
  CLUS_3                           10                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11P15.4) MUTATED       39      8      5      6
  DEL PEAK 13(11P15.4) WILD-TYPE     27     46     13     18
D20V6, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           39                             27
  CLUS_2                            8                             46
  CLUS_3                            5                             13
  CLUS_4                            6                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(11P15.4) MUTATED       12      8      2     24     11
  DEL PEAK 13(11P15.4) WILD-TYPE     22     50      9     11     12
D20V7, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           12                             22
  CLUS_2                            8                             50
  CLUS_3                            2                              9
  CLUS_4                           24                             11
  CLUS_5                           11                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11P15.4) MUTATED       16     31      5      5
  DEL PEAK 13(11P15.4) WILD-TYPE     55     22     13     14
D20V8, multiclass
        clus
vv       DEL PEAK 13(11P15.4) MUTATED DEL PEAK 13(11P15.4) WILD-TYPE
  CLUS_1                           16                             55
  CLUS_2                           31                             22
  CLUS_3                            5                             13
  CLUS_4                            5                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 14(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.1) MUTATED        4     26     18
  DEL PEAK 14(11Q22.1) WILD-TYPE     56     37     21
D21V1, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            4                             56
  CLUS_2                           26                             37
  CLUS_3                           18                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.1) MUTATED       16     19     13
  DEL PEAK 14(11Q22.1) WILD-TYPE     24     59     31
D21V2, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           16                             24
  CLUS_2                           19                             59
  CLUS_3                           13                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.1) MUTATED        9     10     23      6
  DEL PEAK 14(11Q22.1) WILD-TYPE     24     54     21     15
D21V3, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                           10                             54
  CLUS_3                           23                             21
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.1) MUTATED       10     12     21      5
  DEL PEAK 14(11Q22.1) WILD-TYPE     24     52     22     16
D21V4, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                           12                             52
  CLUS_3                           21                             22
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(11Q22.1) MUTATED       28      9     11
  DEL PEAK 14(11Q22.1) WILD-TYPE     37     49     28
D21V5, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           28                             37
  CLUS_2                            9                             49
  CLUS_3                           11                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.1) MUTATED       30      8      2      8
  DEL PEAK 14(11Q22.1) WILD-TYPE     36     46     16     16
D21V6, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           30                             36
  CLUS_2                            8                             46
  CLUS_3                            2                             16
  CLUS_4                            8                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(11Q22.1) MUTATED       10      8      2     20      8
  DEL PEAK 14(11Q22.1) WILD-TYPE     24     50      9     15     15
D21V7, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                            8                             50
  CLUS_3                            2                              9
  CLUS_4                           20                             15
  CLUS_5                            8                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(11Q22.1) MUTATED       17     23      2      6
  DEL PEAK 14(11Q22.1) WILD-TYPE     54     30     16     13
D21V8, multiclass
        clus
vv       DEL PEAK 14(11Q22.1) MUTATED DEL PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           17                             54
  CLUS_2                           23                             30
  CLUS_3                            2                             16
  CLUS_4                            6                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 15(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12Q21.33) MUTATED        1      2      5
  DEL PEAK 15(12Q21.33) WILD-TYPE     59     61     34
D22V1, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             1                              59
  CLUS_2                             2                              61
  CLUS_3                             5                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12Q21.33) MUTATED        1      5      2
  DEL PEAK 15(12Q21.33) WILD-TYPE     39     73     42
D22V2, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             1                              39
  CLUS_2                             5                              73
  CLUS_3                             2                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12Q21.33) MUTATED        1      3      3      1
  DEL PEAK 15(12Q21.33) WILD-TYPE     32     61     41     20
D22V3, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             1                              32
  CLUS_2                             3                              61
  CLUS_3                             3                              41
  CLUS_4                             1                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12Q21.33) MUTATED        2      4      1      1
  DEL PEAK 15(12Q21.33) WILD-TYPE     32     60     42     20
D22V4, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             2                              32
  CLUS_2                             4                              60
  CLUS_3                             1                              42
  CLUS_4                             1                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(12Q21.33) MUTATED        2      4      2
  DEL PEAK 15(12Q21.33) WILD-TYPE     63     54     37
D22V5, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             2                              63
  CLUS_2                             4                              54
  CLUS_3                             2                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12Q21.33) MUTATED        2      4      1      1
  DEL PEAK 15(12Q21.33) WILD-TYPE     64     50     17     23
D22V6, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             2                              64
  CLUS_2                             4                              50
  CLUS_3                             1                              17
  CLUS_4                             1                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(12Q21.33) MUTATED        2      4      0      2      0
  DEL PEAK 15(12Q21.33) WILD-TYPE     32     54     11     33     23
D22V7, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             2                              32
  CLUS_2                             4                              54
  CLUS_3                             0                              11
  CLUS_4                             2                              33
  CLUS_5                             0                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(12Q21.33) MUTATED        4      2      1      1
  DEL PEAK 15(12Q21.33) WILD-TYPE     67     51     17     18
D22V8, multiclass
        clus
vv       DEL PEAK 15(12Q21.33) MUTATED DEL PEAK 15(12Q21.33) WILD-TYPE
  CLUS_1                             4                              67
  CLUS_2                             2                              51
  CLUS_3                             1                              17
  CLUS_4                             1                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 16(13Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q22.3) MUTATED        4      1      3
  DEL PEAK 16(13Q22.3) WILD-TYPE     56     62     36
D23V1, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            4                             56
  CLUS_2                            1                             62
  CLUS_3                            3                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q22.3) MUTATED        1      5      2
  DEL PEAK 16(13Q22.3) WILD-TYPE     39     73     42
D23V2, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            1                             39
  CLUS_2                            5                             73
  CLUS_3                            2                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q22.3) MUTATED        0      4      4      0
  DEL PEAK 16(13Q22.3) WILD-TYPE     33     60     40     21
D23V3, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            4                             60
  CLUS_3                            4                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q22.3) MUTATED        3      4      1      0
  DEL PEAK 16(13Q22.3) WILD-TYPE     31     60     42     21
D23V4, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            3                             31
  CLUS_2                            4                             60
  CLUS_3                            1                             42
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q22.3) MUTATED        3      3      2
  DEL PEAK 16(13Q22.3) WILD-TYPE     62     55     37
D23V5, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                            3                             55
  CLUS_3                            2                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q22.3) MUTATED        3      4      1      0
  DEL PEAK 16(13Q22.3) WILD-TYPE     63     50     17     24
D23V6, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            3                             63
  CLUS_2                            4                             50
  CLUS_3                            1                             17
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(13Q22.3) MUTATED        2      3      1      2      0
  DEL PEAK 16(13Q22.3) WILD-TYPE     32     55     10     33     23
D23V7, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            2                             32
  CLUS_2                            3                             55
  CLUS_3                            1                             10
  CLUS_4                            2                             33
  CLUS_5                            0                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(13Q22.3) MUTATED        4      3      1      0
  DEL PEAK 16(13Q22.3) WILD-TYPE     67     50     17     19
D23V8, multiclass
        clus
vv       DEL PEAK 16(13Q22.3) MUTATED DEL PEAK 16(13Q22.3) WILD-TYPE
  CLUS_1                            4                             67
  CLUS_2                            3                             50
  CLUS_3                            1                             17
  CLUS_4                            0                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 17(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        0      2      3
  DEL PEAK 17(16Q21) WILD-TYPE     60     61     36
D24V1, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          0                           60
  CLUS_2                          2                           61
  CLUS_3                          3                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        3      2      0
  DEL PEAK 17(16Q21) WILD-TYPE     37     76     44
D24V2, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           37
  CLUS_2                          2                           76
  CLUS_3                          0                           44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q21) MUTATED        2      1      2      0
  DEL PEAK 17(16Q21) WILD-TYPE     31     63     42     21
D24V3, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          2                           31
  CLUS_2                          1                           63
  CLUS_3                          2                           42
  CLUS_4                          0                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q21) MUTATED        4      1      0      0
  DEL PEAK 17(16Q21) WILD-TYPE     30     63     43     21
D24V4, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          4                           30
  CLUS_2                          1                           63
  CLUS_3                          0                           43
  CLUS_4                          0                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        3      0      2
  DEL PEAK 17(16Q21) WILD-TYPE     62     58     37
D24V5, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           62
  CLUS_2                          0                           58
  CLUS_3                          2                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q21) MUTATED        3      1      1      0
  DEL PEAK 17(16Q21) WILD-TYPE     63     53     17     24
D24V6, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           63
  CLUS_2                          1                           53
  CLUS_3                          1                           17
  CLUS_4                          0                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(16Q21) MUTATED        3      0      0      2      0
  DEL PEAK 17(16Q21) WILD-TYPE     31     58     11     33     23
D24V7, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           31
  CLUS_2                          0                           58
  CLUS_3                          0                           11
  CLUS_4                          2                           33
  CLUS_5                          0                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(16Q21) MUTATED        2      2      1      0
  DEL PEAK 17(16Q21) WILD-TYPE     69     51     17     19
D24V8, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          2                           69
  CLUS_2                          2                           51
  CLUS_3                          1                           17
  CLUS_4                          0                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 18(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED       22     16     26
  DEL PEAK 18(17P13.2) WILD-TYPE     38     47     13
D25V1, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           22                             38
  CLUS_2                           16                             47
  CLUS_3                           26                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED        9     43     12
  DEL PEAK 18(17P13.2) WILD-TYPE     31     35     32
D25V2, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           43                             35
  CLUS_3                           12                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17P13.2) MUTATED       10     35     14      5
  DEL PEAK 18(17P13.2) WILD-TYPE     23     29     30     16
D25V3, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           35                             29
  CLUS_3                           14                             30
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17P13.2) MUTATED       10     36     13      5
  DEL PEAK 18(17P13.2) WILD-TYPE     24     28     30     16
D25V4, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           10                             24
  CLUS_2                           36                             28
  CLUS_3                           13                             30
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17P13.2) MUTATED       21     31     12
  DEL PEAK 18(17P13.2) WILD-TYPE     44     27     27
D25V5, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           31                             27
  CLUS_3                           12                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17P13.2) MUTATED       18     30      9      7
  DEL PEAK 18(17P13.2) WILD-TYPE     48     24      9     17
D25V6, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           18                             48
  CLUS_2                           30                             24
  CLUS_3                            9                              9
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(17P13.2) MUTATED       14     28      6     10      6
  DEL PEAK 18(17P13.2) WILD-TYPE     20     30      5     25     17
D25V7, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           14                             20
  CLUS_2                           28                             30
  CLUS_3                            6                              5
  CLUS_4                           10                             25
  CLUS_5                            6                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(17P13.2) MUTATED       36     13      9      6
  DEL PEAK 18(17P13.2) WILD-TYPE     35     40      9     13
D25V8, multiclass
        clus
vv       DEL PEAK 18(17P13.2) MUTATED DEL PEAK 18(17P13.2) WILD-TYPE
  CLUS_1                           36                             35
  CLUS_2                           13                             40
  CLUS_3                            9                              9
  CLUS_4                            6                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 19(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED       13      4     25
  DEL PEAK 19(17Q11.2) WILD-TYPE     47     59     14
D26V1, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                           13                             47
  CLUS_2                            4                             59
  CLUS_3                           25                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED        4     29      9
  DEL PEAK 19(17Q11.2) WILD-TYPE     36     49     35
D26V2, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                           29                             49
  CLUS_3                            9                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17Q11.2) MUTATED        5     25      9      3
  DEL PEAK 19(17Q11.2) WILD-TYPE     28     39     35     18
D26V3, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                           25                             39
  CLUS_3                            9                             35
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17Q11.2) MUTATED        6     27      6      3
  DEL PEAK 19(17Q11.2) WILD-TYPE     28     37     37     18
D26V4, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            6                             28
  CLUS_2                           27                             37
  CLUS_3                            6                             37
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(17Q11.2) MUTATED       13     21      8
  DEL PEAK 19(17Q11.2) WILD-TYPE     52     37     31
D26V5, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                           21                             37
  CLUS_3                            8                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17Q11.2) MUTATED       12     21      4      5
  DEL PEAK 19(17Q11.2) WILD-TYPE     54     33     14     19
D26V6, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                           21                             33
  CLUS_3                            4                             14
  CLUS_4                            5                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(17Q11.2) MUTATED        8     19      4      8      3
  DEL PEAK 19(17Q11.2) WILD-TYPE     26     39      7     27     20
D26V7, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                            8                             26
  CLUS_2                           19                             39
  CLUS_3                            4                              7
  CLUS_4                            8                             27
  CLUS_5                            3                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(17Q11.2) MUTATED       25      9      4      4
  DEL PEAK 19(17Q11.2) WILD-TYPE     46     44     14     15
D26V8, multiclass
        clus
vv       DEL PEAK 19(17Q11.2) MUTATED DEL PEAK 19(17Q11.2) WILD-TYPE
  CLUS_1                           25                             46
  CLUS_2                            9                             44
  CLUS_3                            4                             14
  CLUS_4                            4                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 20(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q13.31) MUTATED       40      9     16
  DEL PEAK 20(22Q13.31) WILD-TYPE     20     54     23
D27V1, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            40                              20
  CLUS_2                             9                              54
  CLUS_3                            16                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q13.31) MUTATED       11     40     14
  DEL PEAK 20(22Q13.31) WILD-TYPE     29     38     30
D27V2, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            11                              29
  CLUS_2                            40                              38
  CLUS_3                            14                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(22Q13.31) MUTATED        9     35     13      8
  DEL PEAK 20(22Q13.31) WILD-TYPE     24     29     31     13
D27V3, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                             9                              24
  CLUS_2                            35                              29
  CLUS_3                            13                              31
  CLUS_4                             8                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(22Q13.31) MUTATED       13     37      8      7
  DEL PEAK 20(22Q13.31) WILD-TYPE     21     27     35     14
D27V4, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            13                              21
  CLUS_2                            37                              27
  CLUS_3                             8                              35
  CLUS_4                             7                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q13.31) MUTATED       17     29     19
  DEL PEAK 20(22Q13.31) WILD-TYPE     48     29     20
D27V5, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            17                              48
  CLUS_2                            29                              29
  CLUS_3                            19                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(22Q13.31) MUTATED       18     29      7     11
  DEL PEAK 20(22Q13.31) WILD-TYPE     48     25     11     13
D27V6, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            18                              48
  CLUS_2                            29                              25
  CLUS_3                             7                              11
  CLUS_4                            11                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(22Q13.31) MUTATED       13     33      4      8      7
  DEL PEAK 20(22Q13.31) WILD-TYPE     21     25      7     27     16
D27V7, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            13                              21
  CLUS_2                            33                              25
  CLUS_3                             4                               7
  CLUS_4                             8                              27
  CLUS_5                             7                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(22Q13.31) MUTATED       37     13      7      8
  DEL PEAK 20(22Q13.31) WILD-TYPE     34     40     11     11
D27V8, multiclass
        clus
vv       DEL PEAK 20(22Q13.31) MUTATED DEL PEAK 20(22Q13.31) WILD-TYPE
  CLUS_1                            37                              34
  CLUS_2                            13                              40
  CLUS_3                             7                              11
  CLUS_4                             8                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 21(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP21.1) MUTATED       21      8     17
  DEL PEAK 21(XP21.1) WILD-TYPE     39     55     22
D28V1, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                          21                            39
  CLUS_2                           8                            55
  CLUS_3                          17                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP21.1) MUTATED        9     31      6
  DEL PEAK 21(XP21.1) WILD-TYPE     31     47     38
D28V2, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                           9                            31
  CLUS_2                          31                            47
  CLUS_3                           6                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(XP21.1) MUTATED       10     25      9      2
  DEL PEAK 21(XP21.1) WILD-TYPE     23     39     35     19
D28V3, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          25                            39
  CLUS_3                           9                            35
  CLUS_4                           2                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(XP21.1) MUTATED        7     27     11      1
  DEL PEAK 21(XP21.1) WILD-TYPE     27     37     32     20
D28V4, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                           7                            27
  CLUS_2                          27                            37
  CLUS_3                          11                            32
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP21.1) MUTATED       13     27      6
  DEL PEAK 21(XP21.1) WILD-TYPE     52     31     33
D28V5, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                          13                            52
  CLUS_2                          27                            31
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(XP21.1) MUTATED       15     21      7      3
  DEL PEAK 21(XP21.1) WILD-TYPE     51     33     11     21
D28V6, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                          15                            51
  CLUS_2                          21                            33
  CLUS_3                           7                            11
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(XP21.1) MUTATED       11     22      1      7      5
  DEL PEAK 21(XP21.1) WILD-TYPE     23     36     10     28     18
D28V7, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                          11                            23
  CLUS_2                          22                            36
  CLUS_3                           1                            10
  CLUS_4                           7                            28
  CLUS_5                           5                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(XP21.1) MUTATED       25     13      7      1
  DEL PEAK 21(XP21.1) WILD-TYPE     46     40     11     18
D28V8, multiclass
        clus
vv       DEL PEAK 21(XP21.1) MUTATED DEL PEAK 21(XP21.1) WILD-TYPE
  CLUS_1                          25                            46
  CLUS_2                          13                            40
  CLUS_3                           7                            11
  CLUS_4                           1                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
