gene1	gene2	pval	qval
SPOP	TP53	0.304	1
FOXA1	TP53	0.322	1
SPOP	PIK3CA	0.383	1
SPOP	FAM47C	0.427	1
TP53	FAM47C	0.473	1
TP53	CDK12	0.52	1
SPOP	ZMYM3	0.529	1
TP53	KDM6A	0.572	1
TP53	RPTN	0.572	1
TP53	ZMYM3	0.572	1
NKX3-1	SPOP	0.589	1
PTEN	SPOP	0.621	1
NKX3-1	TP53	0.628	1
OR4D5	TP53	0.628	1
TP53	CNTNAP1	0.628	1
TP53	MED15	0.628	1
TP53	TP53BP1	0.628	1
ATM	CTNNB1	0.65	1
ATM	PIK3CA	0.65	1
IDH1	SPOP	0.656	1
SPOP	CDKN1B	0.656	1
SPOP	RNF31	0.656	1
SPOP	SMG7	0.656	1
SPOP	TCEB3	0.656	1
SPOP	ZNF709	0.656	1
ATM	SPOP	0.66	1
PTEN	FAM47C	0.661	1
PTEN	TP53	0.68	1
ATM	FAM47C	0.683	1
FOXA1	FAM47C	0.683	1
IDH1	TP53	0.69	1
TP53	CDKN1B	0.69	1
TP53	ZNF709	0.69	1
PTEN	CDK12	0.696	1
KIDINS220	SPOP	0.729	1
LMOD2	SPOP	0.729	1
SPOP	EDC4	0.729	1
BRAF	PTEN	0.734	1
LILRB5	PTEN	0.734	1
PTEN	RPTN	0.734	1
ATM	BRAF	0.752	1
ATM	KDM6A	0.752	1
ATM	RPTN	0.752	1
ATM	ZMYM3	0.752	1
BRAF	FOXA1	0.752	1
CTNNB1	FAM47C	0.752	1
FOXA1	KDM6A	0.752	1
FOXA1	ZMYM3	0.752	1
FAM47C	PIK3CA	0.752	1
LMOD2	TP53	0.757	1
NKX3-1	PTEN	0.773	1
NTM	PTEN	0.773	1
OR4D5	PTEN	0.773	1
PTEN	CNTNAP1	0.773	1
PTEN	MED15	0.773	1
PTEN	TP53BP1	0.773	1
CTNNB1	SPOP	0.778	1
CTNNB1	CDK12	0.78	1
CDK12	PIK3CA	0.78	1
ATM	NKX3-1	0.789	1
ATM	NTM	0.789	1
ATM	OR4D5	0.789	1
ATM	CNTNAP1	0.789	1
ATM	MED15	0.789	1
ATM	TP53BP1	0.789	1
FOXA1	NKX3-1	0.789	1
FOXA1	NTM	0.789	1
FOXA1	TP53BP1	0.789	1
BRAF	CTNNB1	0.808	1
BRAF	PIK3CA	0.808	1
CTNNB1	LILRB5	0.808	1
CTNNB1	ZMYM3	0.808	1
LILRB5	PIK3CA	0.808	1
KDM6A	PIK3CA	0.808	1
PIK3CA	ZMYM3	0.808	1
PTEN	CDKN1B	0.814	1
PTEN	MLLT10	0.814	1
PTEN	RNF31	0.814	1
PTEN	TCEB3	0.814	1
PTEN	ZNF709	0.814	1
TP53	PIK3CA	0.817	1
ATM	IDH1	0.827	1
ATM	MLLT10	0.827	1
ATM	RNF31	0.827	1
ATM	TCEB3	0.827	1
ATM	TNRC18	0.827	1
ATM	ZNF709	0.827	1
FOXA1	IDH1	0.827	1
FOXA1	CDKN1B	0.827	1
FOXA1	MLLT10	0.827	1
FOXA1	RNF31	0.827	1
FOXA1	TCEB3	0.827	1
FOXA1	ZNF709	0.827	1
BRAF	FAM47C	0.828	1
LILRB5	FAM47C	0.828	1
FAM47C	KDM6A	0.828	1
FAM47C	ZMYM3	0.828	1
CTNNB1	NKX3-1	0.838	1
CTNNB1	NTM	0.838	1
CTNNB1	OR4D5	0.838	1
CTNNB1	CNTNAP1	0.838	1
CTNNB1	MED15	0.838	1
CTNNB1	TP53BP1	0.838	1
NKX3-1	PIK3CA	0.838	1
NTM	PIK3CA	0.838	1
OR4D5	PIK3CA	0.838	1
CNTNAP1	PIK3CA	0.838	1
MED15	PIK3CA	0.838	1
PIK3CA	TP53BP1	0.838	1
BRAF	CDK12	0.848	1
LILRB5	CDK12	0.848	1
CDK12	KDM6A	0.848	1
CDK12	ZMYM3	0.848	1
NKX3-1	FAM47C	0.855	1
NTM	FAM47C	0.855	1
OR4D5	FAM47C	0.855	1
CNTNAP1	FAM47C	0.855	1
FAM47C	MED15	0.855	1
FAM47C	TP53BP1	0.855	1
KIDINS220	PTEN	0.857	1
PTEN	SMAD4	0.857	1
PTEN	EDC4	0.857	1
ATM	SMAD4	0.868	1
ATM	EDC4	0.868	1
CTNNB1	IDH1	0.868	1
CTNNB1	MLLT10	0.868	1
CTNNB1	RNF31	0.868	1
CTNNB1	SMG7	0.868	1
CTNNB1	TCEB3	0.868	1
CTNNB1	TNRC18	0.868	1
CTNNB1	ZNF709	0.868	1
FOXA1	KIDINS220	0.868	1
FOXA1	LMOD2	0.868	1
FOXA1	SMAD4	0.868	1
FOXA1	EDC4	0.868	1
IDH1	PIK3CA	0.868	1
CDKN1B	PIK3CA	0.868	1
MLLT10	PIK3CA	0.868	1
PIK3CA	RNF31	0.868	1
PIK3CA	SMG7	0.868	1
PIK3CA	TCEB3	0.868	1
BRAF	LILRB5	0.869	1
BRAF	KDM6A	0.869	1
LILRB5	KDM6A	0.869	1
LILRB5	RPTN	0.869	1
LILRB5	ZMYM3	0.869	1
KDM6A	RPTN	0.869	1
KDM6A	ZMYM3	0.869	1
NKX3-1	CDK12	0.872	1
NTM	CDK12	0.872	1
OR4D5	CDK12	0.872	1
CDK12	MED15	0.872	1
CDK12	TP53BP1	0.872	1
IDH1	FAM47C	0.882	1
CDKN1B	FAM47C	0.882	1
FAM47C	RNF31	0.882	1
FAM47C	TCEB3	0.882	1
FAM47C	TNRC18	0.882	1
FAM47C	ZNF709	0.882	1
ATM	PTEN	0.886	1
FOXA1	PTEN	0.886	1
LILRB5	SPOP	0.888	1
SPOP	KDM6A	0.888	1
SPOP	RPTN	0.888	1
BRAF	NKX3-1	0.889	1
BRAF	NTM	0.889	1
BRAF	CNTNAP1	0.889	1
LILRB5	NKX3-1	0.889	1
LILRB5	NTM	0.889	1
LILRB5	OR4D5	0.889	1
LILRB5	CNTNAP1	0.889	1
LILRB5	MED15	0.889	1
LILRB5	TP53BP1	0.889	1
NKX3-1	KDM6A	0.889	1
NKX3-1	RPTN	0.889	1
NKX3-1	ZMYM3	0.889	1
NTM	KDM6A	0.889	1
NTM	RPTN	0.889	1
OR4D5	KDM6A	0.889	1
OR4D5	RPTN	0.889	1
CNTNAP1	KDM6A	0.889	1
CNTNAP1	RPTN	0.889	1
CNTNAP1	ZMYM3	0.889	1
KDM6A	MED15	0.889	1
KDM6A	TP53BP1	0.889	1
IDH1	CDK12	0.896	1
CDKN1B	CDK12	0.896	1
CDK12	MLLT10	0.896	1
CDK12	SMG7	0.896	1
CDK12	TCEB3	0.896	1
CDK12	TNRC18	0.896	1
CDK12	ZNF709	0.896	1
CTNNB1	KIDINS220	0.9	1
CTNNB1	EDC4	0.9	1
KIDINS220	PIK3CA	0.9	1
LMOD2	PIK3CA	0.9	1
ATM	FOXA1	0.901	1
NKX3-1	NTM	0.907	1
NKX3-1	OR4D5	0.907	1
NKX3-1	CNTNAP1	0.907	1
NKX3-1	MED15	0.907	1
NKX3-1	TP53BP1	0.907	1
NTM	CNTNAP1	0.907	1
NTM	MED15	0.907	1
NTM	TP53BP1	0.907	1
OR4D5	CNTNAP1	0.907	1
OR4D5	MED15	0.907	1
OR4D5	TP53BP1	0.907	1
CNTNAP1	MED15	0.907	1
CNTNAP1	TP53BP1	0.907	1
BRAF	TP53	0.91	1
LILRB5	TP53	0.91	1
BRAF	IDH1	0.911	1
BRAF	TCEB3	0.911	1
IDH1	LILRB5	0.911	1
IDH1	KDM6A	0.911	1
IDH1	RPTN	0.911	1
KIDINS220	FAM47C	0.911	1
LILRB5	CDKN1B	0.911	1
LILRB5	MLLT10	0.911	1
LILRB5	RNF31	0.911	1
LILRB5	SMG7	0.911	1
LILRB5	TCEB3	0.911	1
LILRB5	TNRC18	0.911	1
LMOD2	FAM47C	0.911	1
SMAD4	FAM47C	0.911	1
CDKN1B	KDM6A	0.911	1
EDC4	FAM47C	0.911	1
KDM6A	MLLT10	0.911	1
KDM6A	RNF31	0.911	1
KDM6A	SMG7	0.911	1
KDM6A	TCEB3	0.911	1
KDM6A	TNRC18	0.911	1
KDM6A	ZNF709	0.911	1
MLLT10	RPTN	0.911	1
MLLT10	ZMYM3	0.911	1
RPTN	TCEB3	0.911	1
RPTN	TNRC18	0.911	1
TCEB3	ZMYM3	0.911	1
TNRC18	ZMYM3	0.911	1
KIDINS220	CDK12	0.921	1
LMOD2	CDK12	0.921	1
NTM	SPOP	0.921	1
OR4D5	SPOP	0.921	1
SPOP	MED15	0.921	1
SPOP	TP53BP1	0.921	1
CDK12	EDC4	0.921	1
IDH1	NKX3-1	0.925	1
IDH1	NTM	0.925	1
IDH1	OR4D5	0.925	1
IDH1	CNTNAP1	0.925	1
IDH1	TP53BP1	0.925	1
NKX3-1	CDKN1B	0.925	1
NKX3-1	MLLT10	0.925	1
NKX3-1	RNF31	0.925	1
NKX3-1	SMG7	0.925	1
NKX3-1	TNRC18	0.925	1
NKX3-1	ZNF709	0.925	1
NTM	CDKN1B	0.925	1
NTM	MLLT10	0.925	1
NTM	RNF31	0.925	1
NTM	SMG7	0.925	1
NTM	TCEB3	0.925	1
NTM	TNRC18	0.925	1
NTM	ZNF709	0.925	1
OR4D5	CDKN1B	0.925	1
OR4D5	RNF31	0.925	1
OR4D5	SMG7	0.925	1
OR4D5	TCEB3	0.925	1
OR4D5	TNRC18	0.925	1
OR4D5	ZNF709	0.925	1
CDKN1B	CNTNAP1	0.925	1
CNTNAP1	MLLT10	0.925	1
CNTNAP1	RNF31	0.925	1
CNTNAP1	SMG7	0.925	1
CNTNAP1	TCEB3	0.925	1
CNTNAP1	TNRC18	0.925	1
CNTNAP1	ZNF709	0.925	1
MED15	MLLT10	0.925	1
MED15	TCEB3	0.925	1
MED15	TNRC18	0.925	1
MLLT10	TP53BP1	0.925	1
TNRC18	TP53BP1	0.925	1
BRAF	KIDINS220	0.932	1
BRAF	LMOD2	0.932	1
BRAF	SMAD4	0.932	1
BRAF	EDC4	0.932	1
KIDINS220	LILRB5	0.932	1
KIDINS220	KDM6A	0.932	1
KIDINS220	RPTN	0.932	1
KIDINS220	ZMYM3	0.932	1
LILRB5	LMOD2	0.932	1
LILRB5	SMAD4	0.932	1
LILRB5	EDC4	0.932	1
LMOD2	RPTN	0.932	1
LMOD2	ZMYM3	0.932	1
PTEN	PIK3CA	0.932	1
SMAD4	KDM6A	0.932	1
SMAD4	RPTN	0.932	1
SMAD4	ZMYM3	0.932	1
EDC4	KDM6A	0.932	1
EDC4	RPTN	0.932	1
EDC4	ZMYM3	0.932	1
NTM	TP53	0.937	1
IDH1	CDKN1B	0.94	1
IDH1	MLLT10	0.94	1
IDH1	RNF31	0.94	1
IDH1	SMG7	0.94	1
IDH1	TCEB3	0.94	1
IDH1	TNRC18	0.94	1
IDH1	ZNF709	0.94	1
CDKN1B	MLLT10	0.94	1
CDKN1B	TCEB3	0.94	1
CDKN1B	TNRC18	0.94	1
MLLT10	RNF31	0.94	1
MLLT10	SMG7	0.94	1
MLLT10	TCEB3	0.94	1
MLLT10	TNRC18	0.94	1
MLLT10	ZNF709	0.94	1
RNF31	TCEB3	0.94	1
RNF31	TNRC18	0.94	1
SMG7	TCEB3	0.94	1
TCEB3	TNRC18	0.94	1
TCEB3	ZNF709	0.94	1
TNRC18	ZNF709	0.94	1
CTNNB1	FOXA1	0.942	1
FOXA1	PIK3CA	0.942	1
KIDINS220	NKX3-1	0.943	1
KIDINS220	NTM	0.943	1
KIDINS220	OR4D5	0.943	1
KIDINS220	CNTNAP1	0.943	1
KIDINS220	MED15	0.943	1
KIDINS220	TP53BP1	0.943	1
LMOD2	NKX3-1	0.943	1
LMOD2	NTM	0.943	1
LMOD2	OR4D5	0.943	1
LMOD2	CNTNAP1	0.943	1
LMOD2	MED15	0.943	1
LMOD2	TP53BP1	0.943	1
NKX3-1	SMAD4	0.943	1
NKX3-1	EDC4	0.943	1
NTM	SMAD4	0.943	1
NTM	EDC4	0.943	1
OR4D5	SMAD4	0.943	1
OR4D5	EDC4	0.943	1
SMAD4	CNTNAP1	0.943	1
SMAD4	MED15	0.943	1
SMAD4	TP53BP1	0.943	1
CNTNAP1	EDC4	0.943	1
EDC4	MED15	0.943	1
EDC4	TP53BP1	0.943	1
SPOP	MLLT10	0.949	1
SPOP	TNRC18	0.949	1
IDH1	KIDINS220	0.955	1
IDH1	LMOD2	0.955	1
IDH1	SMAD4	0.955	1
IDH1	EDC4	0.955	1
KIDINS220	CDKN1B	0.955	1
KIDINS220	MLLT10	0.955	1
KIDINS220	RNF31	0.955	1
KIDINS220	SMG7	0.955	1
KIDINS220	TCEB3	0.955	1
KIDINS220	TNRC18	0.955	1
KIDINS220	ZNF709	0.955	1
LMOD2	CDKN1B	0.955	1
LMOD2	MLLT10	0.955	1
LMOD2	RNF31	0.955	1
LMOD2	SMG7	0.955	1
LMOD2	TCEB3	0.955	1
LMOD2	TNRC18	0.955	1
LMOD2	ZNF709	0.955	1
SMAD4	CDKN1B	0.955	1
SMAD4	MLLT10	0.955	1
SMAD4	RNF31	0.955	1
SMAD4	SMG7	0.955	1
SMAD4	TCEB3	0.955	1
SMAD4	TNRC18	0.955	1
SMAD4	ZNF709	0.955	1
CDKN1B	EDC4	0.955	1
EDC4	MLLT10	0.955	1
EDC4	RNF31	0.955	1
EDC4	SMG7	0.955	1
EDC4	TCEB3	0.955	1
EDC4	TNRC18	0.955	1
EDC4	ZNF709	0.955	1
TP53	MLLT10	0.96	1
TP53	RNF31	0.96	1
TP53	SMG7	0.96	1
TP53	TCEB3	0.96	1
TP53	TNRC18	0.96	1
ATM	CDK12	0.964	1
FOXA1	CDK12	0.964	1
CTNNB1	TP53	0.965	1
KIDINS220	LMOD2	0.966	1
LMOD2	SMAD4	0.966	1
LMOD2	EDC4	0.966	1
PTEN	KDM6A	0.969	1
PTEN	ZMYM3	0.969	1
SMAD4	SPOP	0.973	1
ATM	LILRB5	0.974	1
FOXA1	LILRB5	0.974	1
FOXA1	RPTN	0.974	1
SPOP	CDK12	0.976	1
FOXA1	SPOP	0.978	1
KIDINS220	TP53	0.979	1
TP53	EDC4	0.979	1
FOXA1	OR4D5	0.982	1
FOXA1	CNTNAP1	0.982	1
FOXA1	MED15	0.982	1
CDK12	FAM47C	0.984	1
CTNNB1	KDM6A	0.985	1
CTNNB1	RPTN	0.985	1
PIK3CA	RPTN	0.985	1
ATM	TP53	0.986	1
BRAF	SPOP	0.986	1
IDH1	PTEN	0.987	1
PTEN	SMG7	0.987	1
PTEN	TNRC18	0.987	1
FAM47C	RPTN	0.988	1
ATM	CDKN1B	0.989	1
ATM	SMG7	0.989	1
FOXA1	SMG7	0.989	1
CDK12	RPTN	0.991	1
SPOP	CNTNAP1	0.992	1
CTNNB1	PTEN	0.993	1
LMOD2	PTEN	0.993	1
ATM	KIDINS220	0.994	1
ATM	LMOD2	0.994	1
BRAF	RPTN	0.994	1
BRAF	ZMYM3	0.994	1
CTNNB1	CDKN1B	0.994	1
CDK12	CNTNAP1	0.994	1
PIK3CA	TNRC18	0.994	1
PIK3CA	ZNF709	0.994	1
RPTN	ZMYM3	0.994	1
FAM47C	MLLT10	0.995	1
FAM47C	SMG7	0.995	1
BRAF	MED15	0.996	1
BRAF	TP53BP1	0.996	1
NTM	ZMYM3	0.996	1
OR4D5	ZMYM3	0.996	1
CDK12	RNF31	0.996	1
MED15	ZMYM3	0.996	1
RPTN	TP53BP1	0.996	1
TP53BP1	ZMYM3	0.996	1
BRAF	CDKN1B	0.997	1
BRAF	MLLT10	0.997	1
BRAF	RNF31	0.997	1
BRAF	TNRC18	0.997	1
BRAF	ZNF709	0.997	1
CTNNB1	LMOD2	0.997	1
CTNNB1	SMAD4	0.997	1
IDH1	ZMYM3	0.997	1
LILRB5	ZNF709	0.997	1
NTM	OR4D5	0.997	1
SMAD4	PIK3CA	0.997	1
CDKN1B	RPTN	0.997	1
CDKN1B	ZMYM3	0.997	1
EDC4	PIK3CA	0.997	1
MED15	TP53BP1	0.997	1
RNF31	RPTN	0.997	1
RNF31	ZMYM3	0.997	1
RPTN	SMG7	0.997	1
SMG7	ZMYM3	0.997	1
ZMYM3	ZNF709	0.997	1
CTNNB1	PIK3CA	0.998	1
IDH1	MED15	0.998	1
NKX3-1	TCEB3	0.998	1
OR4D5	MLLT10	0.998	1
SMAD4	CDK12	0.998	1
CDKN1B	MED15	0.998	1
MED15	RNF31	0.998	1
MED15	SMG7	0.998	1
MED15	ZNF709	0.998	1
RNF31	TP53BP1	0.998	1
SMG7	TP53BP1	0.998	1
TCEB3	TP53BP1	0.998	1
TP53BP1	ZNF709	0.998	1
LMOD2	KDM6A	0.999	1
SMAD4	TP53	0.999	1
CDKN1B	RNF31	0.999	1
CDKN1B	SMG7	0.999	1
CDKN1B	ZNF709	0.999	1
RNF31	SMG7	0.999	1
RNF31	ZNF709	0.999	1
SMG7	TNRC18	0.999	1
SMG7	ZNF709	0.999	1
BRAF	OR4D5	1	1
BRAF	SMG7	1	1
FOXA1	TNRC18	1	1
KIDINS220	SMAD4	1	1
KIDINS220	EDC4	1	1
SMAD4	EDC4	1	1
CDKN1B	TP53BP1	1	1
MED15	RPTN	1	1
RPTN	ZNF709	1	1
