gene1	gene2	pval	qval
SPOP	Del_21q22.3	0.000697	1
SPOP	Del_17p13.1	0.00721	1
SPOP	Del_10q23.31	0.0264	1
ATM	Del_21q22.3	0.034	1
Del_4q28.2	Del_21q22.3	0.0454	1
Del_5q21.1	Del_17q21.31	0.0482	1
SPOP	Del_16q24.1	0.0538	1
SPOP	Del_17q21.31	0.0545	1
Amp_7q22.1	Del_10q23.31	0.0564	1
8p-Amp	Del_21q22.3	0.0605	1
TP53	Del_3p13	0.0696	1
7q-Amp	Del_10q23.31	0.0707	1
SPOP	Del_8p23.2	0.0817	1
FOXA1	8p-Del	0.0844	1
CDK12	Del_8p21.3	0.0883	1
FAM47C	Del_8p23.2	0.0945	1
FAM47C	Del_13q14.13	0.0985	1
SPOP	Del_8p21.3	0.108	1
Del_3p13	Del_5q13.2	0.113	1
Del_5q13.2	Del_17q21.31	0.113	1
8q-Amp	Del_21q22.3	0.121	1
Del_2q22.3	Del_21q22.3	0.121	1
Del_4q28.2	Del_17p13.1	0.122	1
SPOP	Del_16q22.3	0.128	1
8p-Amp	8p-Del	0.129	1
FAM47C	Del_16q24.1	0.132	1
Amp_8q24.21	Del_1p31.3	0.138	1
SPOP	Del_18q23	0.139	1
Del_10q23.31	Del_11q22.3	0.139	1
Amp_Xq27.1	Del_21q22.3	0.142	1
FAM47C	Del_6q14.3	0.167	1
Amp_Xq27.1	Del_16q24.1	0.17	1
FOXA1	Del_21q22.3	0.171	1
CDK12	Del_8p23.2	0.172	1
ZMYM3	Del_8p23.2	0.172	1
BRAF	Del_13q14.13	0.177	1
Del_5q11.2	Del_17q21.31	0.177	1
18p-Del	Del_3p13	0.181	1
FOXA1	Del_18q23	0.186	1
SPOP	17p-Del	0.186	1
BRAF	Del_21q22.3	0.189	1
CDK12	Del_21q22.3	0.189	1
KDM6A	Del_21q22.3	0.189	1
RPTN	Del_21q22.3	0.189	1
Amp_Xp22.11	Del_21q22.3	0.189	1
FAM47C	8p-Del	0.195	1
FAM47C	Del_16q22.3	0.195	1
8p-Del	Amp_14q21.1	0.195	1
Amp_14q21.1	Del_16q22.3	0.195	1
FAM47C	Del_8p21.3	0.197	1
IDH1	Del_8p21.3	0.2	1
Del_5q21.1	Del_21q22.3	0.202	1
Amp_3q26.2	Del_17q21.31	0.204	1
7p-Amp	Del_10q23.31	0.206	1
SPOP	18p-Del	0.207	1
FOXA1	Del_18q21.31	0.208	1
Amp_Xq27.1	Del_6q14.3	0.21	1
Del_3p13	Del_5q21.1	0.212	1
FAM47C	Del_17p13.1	0.219	1
FAM47C	Del_13q22.1	0.227	1
Amp_7p14.3	Del_3p13	0.229	1
TP53BP1	Del_8p23.2	0.231	1
SPOP	Del_3p13	0.232	1
NTM	Del_13q14.13	0.237	1
Amp_Xq27.1	Del_16q22.3	0.24	1
TP53BP1	Del_21q22.3	0.25	1
Xq-Del	Del_21q22.3	0.25	1
Amp_11q13.2	Del_21q22.3	0.25	1
Del_11p11.2	Del_21q22.3	0.25	1
SPOP	Amp_8q22.1	0.252	1
SPOP	Amp_8q24.21	0.252	1
ATM	Del_3p13	0.257	1
FOXA1	Del_3p13	0.257	1
FOXA1	Del_17q21.31	0.257	1
Del_6q14.3	Del_21q22.3	0.264	1
Amp_Xq27.1	Del_17p13.1	0.266	1
LILRB5	Del_10q23.31	0.271	1
CDK12	Del_10q23.31	0.271	1
KDM6A	Del_10q23.31	0.271	1
Amp_1q22	Del_10q23.31	0.271	1
Amp_8q22.1	Del_1q42.3	0.271	1
Amp_8q24.21	Del_1q42.3	0.271	1
Amp_Xq27.1	Del_13q22.1	0.274	1
Amp_Xq21.1	Del_16q24.1	0.284	1
FAM47C	Del_12p13.1	0.285	1
Amp_8p11.23	Del_12p13.1	0.285	1
FOXA1	Del_10q23.31	0.286	1
SPOP	Del_1q42.3	0.286	1
Amp_3q21.3	Del_17q21.31	0.289	1
Del_3p13	Del_4q28.2	0.289	1
Del_4q28.2	Del_17q21.31	0.289	1
8q-Amp	8p-Del	0.291	1
SPOP	8p-Del	0.295	1
CDK12	8p-Del	0.295	1
KDM6A	8p-Del	0.295	1
ZMYM3	8p-Del	0.295	1
8p-Del	Amp_1q22	0.295	1
KIDINS220	Del_8p21.3	0.3	1
EDC4	Del_8p21.3	0.3	1
Del_9p23	Del_13q14.13	0.3	1
IDH1	Del_8p23.2	0.311	1
CNTNAP1	Del_8p23.2	0.311	1
IDH1	Del_13q14.13	0.317	1
CNTNAP1	Del_13q14.13	0.317	1
MLLT10	Del_13q14.13	0.317	1
TCEB3	Del_13q14.13	0.317	1
Amp_Xq25	Del_13q14.13	0.317	1
FOXA1	TP53	0.318	1
FOXA1	18q-Del	0.318	1
SPOP	Del_21q22.2	0.318	1
Del_5q21.1	Del_8p23.2	0.318	1
SPOP	TP53	0.319	1
SPOP	18q-Del	0.319	1
CDK12	Del_17p13.1	0.322	1
RPTN	Del_17p13.1	0.322	1
8p-Amp	Del_3p13	0.324	1
8p-Amp	Del_17q21.31	0.324	1
FAM47C	Del_18q23	0.329	1
Amp_Xq21.1	Del_6q14.3	0.329	1
BRAF	Del_13q22.1	0.331	1
IDH1	Del_21q22.3	0.331	1
CNTNAP1	Del_21q22.3	0.331	1
SMG7	Del_21q22.3	0.331	1
ZNF709	Del_21q22.3	0.331	1
Amp_Xp21.1	Del_21q22.3	0.331	1
Amp_Xq27.1	Del_12p13.1	0.334	1
Del_4q28.2	Del_10q23.31	0.335	1
OR4D5	Del_10q23.31	0.337	1
MED15	Del_10q23.31	0.337	1
TP53BP1	Del_10q23.31	0.337	1
Xq-Del	Del_10q23.31	0.337	1
Amp_11q13.2	Del_10q23.31	0.337	1
Del_10q23.31	Del_11p11.2	0.337	1
PTEN	Del_2q22.1	0.341	1
SPOP	16q-Del	0.345	1
Del_6q14.3	Del_17q21.31	0.348	1
18q-Del	Del_4q28.2	0.35	1
SPOP	12p-Del	0.354	1
FAM47C	Del_18q21.31	0.354	1
Del_2q22.1	Del_3p13	0.355	1
Del_2q22.1	Del_17q21.31	0.355	1
RPTN	Del_8p21.3	0.356	1
Amp_7q22.1	Del_21q22.3	0.357	1
PTEN	Del_2q22.3	0.361	1
PTEN	Del_5q13.2	0.361	1
FOXA1	Del_17p13.1	0.362	1
NTM	8p-Del	0.363	1
OR4D5	8p-Del	0.363	1
TP53BP1	8p-Del	0.363	1
8p-Del	Xq-Del	0.363	1
Amp_Xq21.1	Del_16q22.3	0.363	1
Del_1p22.1	Del_17q21.31	0.364	1
Del_11q22.3	Del_17q21.31	0.364	1
IDH1	Del_16q24.1	0.366	1
NKX3-1	Del_16q24.1	0.366	1
TNRC18	Del_16q24.1	0.366	1
7p-Amp	Del_12p13.1	0.376	1
Amp_3q26.2	Del_12p13.1	0.376	1
Amp_8q22.1	Del_9p23	0.378	1
Amp_8q24.21	Del_1p22.1	0.378	1
Amp_Xq27.1	Del_18q23	0.379	1
FOXA1	Del_8p23.2	0.38	1
Del_2q22.3	Del_3p13	0.385	1
Amp_8p11.23	Del_21q22.3	0.388	1
Amp_14q21.1	Del_21q22.3	0.388	1
OR4D5	Del_17p13.1	0.389	1
TP53BP1	Del_17p13.1	0.389	1
Xq-Del	Del_17p13.1	0.389	1
Amp_11q13.2	Del_17p13.1	0.389	1
Del_11p11.2	Del_17p13.1	0.389	1
8p-Amp	Del_10q23.31	0.39	1
KDM6A	Del_12p13.1	0.391	1
RPTN	Del_12p13.1	0.391	1
3q-Amp	Del_12p13.1	0.391	1
8q-Amp	Del_1q42.3	0.391	1
SPOP	PIK3CA	0.394	1
SPOP	Del_9p23	0.394	1
SPOP	Del_19q13.2	0.394	1
FAM47C	Del_5q11.2	0.394	1
SPOP	Del_18q21.31	0.397	1
NTM	Del_13q22.1	0.399	1
OR4D5	Del_13q22.1	0.399	1
Amp_Xq27.1	Del_18q21.31	0.404	1
Del_2q22.1	Del_21q22.2	0.404	1
Del_5q21.1	Del_10q23.31	0.405	1
Amp_8p11.23	Del_3p13	0.408	1
Amp_8p11.23	Del_17q21.31	0.408	1
Amp_14q21.1	Del_3p13	0.408	1
Amp_14q21.1	Del_17q21.31	0.408	1
FOXA1	Del_1p31.3	0.412	1
IDH1	Del_6q14.3	0.412	1
ZNF709	Del_6q14.3	0.412	1
Amp_Xq25	Del_6q14.3	0.412	1
KIDINS220	Del_8p23.2	0.417	1
LMOD2	Del_8p23.2	0.417	1
EDC4	Del_8p23.2	0.417	1
7q-Amp	Del_21q22.3	0.417	1
Amp_7p14.3	Del_12p13.1	0.419	1
Amp_7q22.1	Del_12p13.1	0.419	1
CDKN1B	Del_10q23.31	0.42	1
CNTNAP1	Del_10q23.31	0.42	1
Amp_Xp21.1	Del_10q23.31	0.42	1
FAM47C	Amp_8q22.1	0.422	1
FAM47C	Amp_8q24.21	0.422	1
FAM47C	Del_5q21.1	0.422	1
7p-Amp	18p-Del	0.423	1
RNF31	Del_13q14.13	0.424	1
13q-Del	Del_5q13.2	0.424	1
Del_2q22.3	Del_21q22.2	0.424	1
TP53	Del_1p22.1	0.426	1
SPOP	8q-Amp	0.429	1
CDK12	Del_18q23	0.436	1
KDM6A	Del_18q23	0.436	1
RPTN	Del_18q23	0.436	1
ZMYM3	Del_18q23	0.436	1
LMOD2	Del_21q22.3	0.437	1
SPOP	FAM47C	0.437	1
RNF31	Del_21q22.3	0.437	1
Amp_Xq27.1	Del_8p23.2	0.438	1
12p-Del	Del_2q22.1	0.44	1
Del_2q22.1	Del_15q21.3	0.44	1
IDH1	8p-Del	0.445	1
IDH1	Del_16q22.3	0.445	1
NKX3-1	Del_16q22.3	0.445	1
CNTNAP1	8p-Del	0.445	1
CNTNAP1	Del_16q22.3	0.445	1
MLLT10	8p-Del	0.445	1
MLLT10	Del_16q22.3	0.445	1
SMG7	8p-Del	0.445	1
TNRC18	Del_16q22.3	0.445	1
8p-Del	Amp_Xq25	0.445	1
Amp_Xq25	Del_16q22.3	0.445	1
18q-Del	Del_2q22.1	0.448	1
3p-Amp	Del_8p21.3	0.449	1
18p-Del	Amp_7q22.1	0.45	1
Del_2q22.1	Del_21q22.3	0.45	1
CTNNB1	Del_10q23.31	0.452	1
FOXA1	17p-Del	0.456	1
FOXA1	Del_11q23.2	0.456	1
Amp_9q33.3	Del_17q21.31	0.457	1
Amp_Xq27.1	Del_3p13	0.457	1
Amp_Xq27.1	Del_17q21.31	0.457	1
MED15	Del_12p13.1	0.458	1
TP53BP1	Del_12p13.1	0.458	1
Amp_11q13.2	Del_12p13.1	0.458	1
12p-Del	Del_2q22.3	0.459	1
Del_2q22.3	Del_15q21.3	0.459	1
KDM6A	Del_18q21.31	0.46	1
RPTN	Del_18q21.31	0.46	1
ZMYM3	Del_18q21.31	0.46	1
SPOP	Del_1p31.3	0.461	1
FOXA1	Del_12p13.1	0.465	1
7q-Amp	Del_12p13.1	0.465	1
TP53BP1	Del_8p21.3	0.467	1
8p-Del	Del_5q21.1	0.468	1
TP53	FAM47C	0.469	1
TP53	Amp_8p11.23	0.469	1
FAM47C	18q-Del	0.469	1
Amp_8q24.21	Del_17q21.31	0.47	1
IDH1	Del_17p13.1	0.471	1
KIDINS220	Del_16q24.1	0.471	1
CDKN1B	Del_17p13.1	0.471	1
CNTNAP1	Del_17p13.1	0.471	1
ZNF709	Del_17p13.1	0.471	1
Amp_8q22.1	Amp_Xq27.1	0.471	1
Amp_8q24.21	Amp_Xq27.1	0.471	1
PTEN	7p-Amp	0.476	1
PTEN	Amp_3q26.2	0.476	1
Amp_14q21.1	Del_8p21.3	0.476	1
8q-Amp	Del_10q23.31	0.478	1
ATM	18p-Del	0.479	1
FOXA1	18p-Del	0.479	1
7q-Amp	18p-Del	0.479	1
IDH1	Del_13q22.1	0.48	1
CNTNAP1	Del_13q22.1	0.48	1
MLLT10	Del_13q22.1	0.48	1
TCEB3	Del_13q22.1	0.48	1
Amp_Xq25	Del_13q22.1	0.48	1
12p-Del	Del_13q22.1	0.481	1
Del_11q23.2	Del_17q21.31	0.483	1
FAM47C	16q-Del	0.485	1
16q-Del	Amp_14q21.1	0.485	1
SPOP	Amp_Xq27.1	0.486	1
17p-Del	Del_4q28.2	0.487	1
CTNNB1	Del_5q13.2	0.497	1
BRAF	Del_5q11.2	0.498	1
RPTN	Del_5q11.2	0.498	1
ZMYM3	Del_5q11.2	0.498	1
3q-Amp	Del_5q11.2	0.498	1
Amp_Xp22.11	Del_5q11.2	0.498	1
Del_5q11.2	Del_6p25.1	0.498	1
OR4D5	Del_18q23	0.502	1
PTEN	Amp_7p14.3	0.502	1
PTEN	Amp_7q22.1	0.502	1
TP53BP1	Del_18q23	0.502	1
Xq-Del	Del_18q23	0.502	1
Amp_11q13.2	Del_18q23	0.502	1
SPOP	Del_12p13.1	0.504	1
7p-Amp	Del_1q42.3	0.504	1
Amp_3q26.2	Del_1q42.3	0.504	1
TP53	Del_6q14.3	0.509	1
13q-Del	18p-Del	0.51	1
18p-Del	Amp_3q21.3	0.51	1
18p-Del	Del_4q28.2	0.51	1
BRAF	Del_3p13	0.512	1
BRAF	Del_17q21.31	0.512	1
LILRB5	Del_3p13	0.512	1
LILRB5	Del_17q21.31	0.512	1
CDK12	Del_3p13	0.512	1
CDK12	Del_17q21.31	0.512	1
KDM6A	Del_3p13	0.512	1
KDM6A	Del_17q21.31	0.512	1
RPTN	Del_17q21.31	0.512	1
3q-Amp	Del_17q21.31	0.512	1
Amp_1q22	Del_17q21.31	0.512	1
Amp_Xp22.11	Del_17q21.31	0.512	1
Del_3p13	Del_6p25.1	0.512	1
13q-Del	Del_12p13.1	0.514	1
Amp_3q21.3	Del_12p13.1	0.514	1
KIDINS220	Del_6q14.3	0.515	1
LMOD2	Del_6q14.3	0.515	1
RNF31	Del_6q14.3	0.515	1
8q-Del	Del_6q14.3	0.515	1
CTNNB1	Del_1p31.3	0.516	1
TP53	Amp_Xq27.1	0.516	1
18q-Del	Amp_Xq27.1	0.516	1
FAM47C	Del_2q22.1	0.52	1
18p-Del	Del_17q21.31	0.52	1
Amp_8p11.23	Del_10q23.31	0.52	1
Amp_14q21.1	Del_2q22.1	0.52	1
12p-Del	Del_11q23.2	0.521	1
17p-Del	Del_15q21.3	0.521	1
Amp_7p14.3	Del_10q23.31	0.522	1
LMOD2	Del_10q23.31	0.523	1
RNF31	Del_10q23.31	0.523	1
1q-Amp	Del_10q23.31	0.523	1
9q-Amp	Del_10q23.31	0.523	1
Amp_12q23.1	Del_10q23.31	0.523	1
Amp_13q12.11	Del_10q23.31	0.523	1
OR4D5	Del_18q21.31	0.524	1
TP53BP1	Del_18q21.31	0.524	1
Amp_11q13.2	Del_18q21.31	0.524	1
ZMYM3	Del_5q21.1	0.525	1
3q-Amp	Amp_8q24.21	0.525	1
6q-Del	Amp_8q24.21	0.525	1
Amp_8q22.1	Del_6p25.1	0.525	1
Amp_Xp22.11	Del_5q21.1	0.525	1
SPOP	Del_11q23.2	0.527	1
KDM6A	Del_8p23.2	0.528	1
RPTN	Del_8p23.2	0.528	1
Amp_1q22	Del_8p23.2	0.528	1
PTEN	7q-Amp	0.53	1
12p-Del	Del_13q14.13	0.53	1
Amp_7p14.3	Del_1q42.3	0.53	1
Amp_7q22.1	Del_1q42.3	0.53	1
16q-Del	Amp_Xq27.1	0.532	1
Del_5q21.1	Del_17p13.1	0.534	1
7p-Amp	Del_21q22.2	0.535	1
Amp_3q26.2	Del_21q22.2	0.535	1
IDH1	Del_12p13.1	0.536	1
NKX3-1	Del_12p13.1	0.536	1
CNTNAP1	Del_12p13.1	0.536	1
SMG7	Del_12p13.1	0.536	1
TNRC18	Del_12p13.1	0.536	1
ZNF709	Del_12p13.1	0.536	1
Amp_Xp22.11	Del_13q14.13	0.537	1
FAM47C	8q-Amp	0.538	1
FAM47C	Del_2q22.3	0.538	1
FAM47C	Del_5q13.2	0.538	1
SPOP	ZMYM3	0.539	1
SPOP	Amp_Xp22.11	0.539	1
Del_9p23	Del_13q22.1	0.54	1
Del_2q22.1	Del_17p13.1	0.545	1
KIDINS220	8p-Del	0.546	1
KIDINS220	Del_16q22.3	0.546	1
LMOD2	8p-Del	0.546	1
SMAD4	8p-Del	0.546	1
EDC4	8p-Del	0.546	1
EDC4	Del_16q22.3	0.546	1
RNF31	8p-Del	0.546	1
Amp_12q23.1	Del_16q22.3	0.546	1
Del_3p13	Del_6q14.3	0.549	1
7p-Amp	Del_21q22.3	0.555	1
LILRB5	Del_21q22.3	0.556	1
FAM47C	Del_1p31.3	0.556	1
3q-Amp	Del_21q22.3	0.556	1
Amp_1q22	Del_21q22.3	0.556	1
Amp_8p11.23	Del_1p31.3	0.556	1
Amp_14q21.1	Del_1p31.3	0.556	1
CTNNB1	17p-Del	0.557	1
PIK3CA	Del_11q23.2	0.557	1
7p-Amp	Del_3p13	0.557	1
7p-Amp	Del_17q21.31	0.557	1
7q-Amp	Del_1q42.3	0.557	1
Del_11q23.2	Del_19q13.2	0.557	1
3p-Amp	Del_8p23.2	0.559	1
Del_2q22.1	Del_18q21.31	0.559	1
NTM	Del_5q11.2	0.56	1
OR4D5	Del_5q11.2	0.56	1
PTEN	Del_4q28.2	0.56	1
PTEN	Del_21q22.2	0.56	1
MED15	Del_5q11.2	0.56	1
Amp_7p14.3	Del_21q22.2	0.56	1
Amp_7q22.1	Del_21q22.2	0.56	1
Amp_Xq21.1	Del_5q11.2	0.56	1
Amp_8q22.1	Del_21q22.3	0.562	1
22q-Del	Del_13q14.13	0.565	1
Amp_Xq27.1	Del_2q22.1	0.565	1
7p-Amp	12p-Del	0.567	1
7p-Amp	Del_15q21.3	0.567	1
8p-Amp	Amp_3q26.2	0.567	1
8p-Amp	Del_12p13.1	0.567	1
Amp_3q26.2	Del_15q21.3	0.567	1
BRAF	18q-Del	0.568	1
TP53	CDK12	0.568	1
TP53	KDM6A	0.568	1
TP53	RPTN	0.568	1
TP53	ZMYM3	0.568	1
TP53	3q-Amp	0.568	1
TP53	6q-Del	0.568	1
KDM6A	18q-Del	0.568	1
RPTN	18q-Del	0.568	1
ZMYM3	18q-Del	0.568	1
1q-Amp	Del_17p13.1	0.569	1
Amp_13q12.11	Del_17p13.1	0.569	1
TP53	Del_11q23.2	0.572	1
OR4D5	Del_17q21.31	0.573	1
MED15	Del_17q21.31	0.573	1
TP53BP1	Del_3p13	0.573	1
TP53BP1	Del_17q21.31	0.573	1
Xq-Del	Del_3p13	0.573	1
Xq-Del	Del_17q21.31	0.573	1
Amp_11q13.2	Del_3p13	0.573	1
Amp_11q13.2	Del_17q21.31	0.573	1
Del_3p13	Del_12q24.32	0.573	1
Del_12q24.32	Del_17q21.31	0.573	1
CDKN1B	Del_18q23	0.576	1
CNTNAP1	Del_18q23	0.576	1
TCEB3	Del_18q23	0.576	1
ZNF709	Del_18q23	0.576	1
3p-Amp	Del_21q22.3	0.576	1
10q-Del	Del_21q22.3	0.576	1
Amp_15q11.2	Del_21q22.3	0.576	1
Amp_Xq25	Del_18q23	0.576	1
PTEN	Del_5q11.2	0.577	1
RNF31	Del_13q22.1	0.577	1
Amp_12q23.1	Del_13q22.1	0.577	1
CTNNB1	18p-Del	0.578	1
Del_4q28.2	Del_18q23	0.578	1
ATM	Del_10q23.31	0.579	1
Amp_Xq27.1	Del_8p21.3	0.58	1
8q-Amp	Amp_Xq27.1	0.582	1
Amp_Xq27.1	Del_2q22.3	0.582	1
Amp_Xq27.1	Del_5q13.2	0.582	1
BRAF	16q-Del	0.583	1
CDK12	16q-Del	0.583	1
KDM6A	16q-Del	0.583	1
NTM	Amp_8q22.1	0.585	1
NTM	Amp_8q24.21	0.585	1
OR4D5	Del_5q21.1	0.585	1
MED15	Amp_8q22.1	0.585	1
MED15	Amp_8q24.21	0.585	1
TP53BP1	Amp_8q22.1	0.585	1
Amp_8q22.1	Amp_Xq21.1	0.585	1
Amp_8q24.21	Amp_Xq21.1	0.585	1
Amp_8q24.21	Del_12q24.32	0.585	1
Amp_Xq21.1	Del_5q21.1	0.585	1
ATM	Del_21q22.2	0.586	1
FOXA1	Del_21q22.2	0.586	1
7q-Amp	Del_21q22.2	0.586	1
Amp_3q21.3	Del_1q42.3	0.586	1
PTEN	8p-Amp	0.591	1
12p-Del	Amp_7p14.3	0.591	1
12p-Del	Amp_7q22.1	0.591	1
Amp_7q22.1	Del_15q21.3	0.591	1
Amp_9q33.3	Del_10q23.31	0.593	1
FAM47C	17p-Del	0.595	1
FAM47C	Del_11q23.2	0.595	1
16q-Del	Del_11q23.2	0.595	1
Del_1p22.1	Del_8p23.2	0.595	1
Amp_7p14.3	Del_17q21.31	0.596	1
Amp_7q22.1	Del_3p13	0.596	1
Amp_7q22.1	Del_17q21.31	0.596	1
CDKN1B	Del_18q21.31	0.597	1
CNTNAP1	Del_18q21.31	0.597	1
TCEB3	Del_18q21.31	0.597	1
ZNF709	Del_18q21.31	0.597	1
Amp_Xq25	Del_18q21.31	0.597	1
SPOP	Del_12q24.32	0.598	1
Amp_Xq27.1	Del_1p31.3	0.599	1
CTNNB1	Amp_3q26.2	0.6	1
CNTNAP1	Del_8p21.3	0.6	1
MLLT10	Del_8p21.3	0.6	1
PIK3CA	Amp_3q26.2	0.6	1
SMG7	Del_8p21.3	0.6	1
ZNF709	Del_8p21.3	0.6	1
7p-Amp	Del_1p22.1	0.6	1
Amp_3q26.2	Del_1p22.1	0.6	1
Amp_3q26.2	Del_9p23	0.6	1
Amp_3q26.2	Del_11q22.3	0.6	1
Amp_Xq25	Del_8p21.3	0.6	1
BRAF	Del_16q24.1	0.604	1
KDM6A	Del_16q24.1	0.604	1
Amp_14q21.1	Del_13q22.1	0.604	1
Del_6q14.3	Del_10q23.31	0.605	1
3p-Amp	Del_16q24.1	0.606	1
10q-Del	Del_16q24.1	0.606	1
8q-Amp	Del_1p31.3	0.61	1
Del_4q28.2	Del_18q21.31	0.61	1
Del_18q21.31	Del_21q22.2	0.61	1
Del_2q22.1	Del_8p23.2	0.611	1
BRAF	Del_2q22.1	0.613	1
ZMYM3	Del_2q22.1	0.613	1
13q-Del	Del_21q22.2	0.613	1
Amp_3q21.3	Del_21q22.2	0.613	1
Amp_7q22.1	Del_17p13.1	0.613	1
Amp_Xp22.11	Del_2q22.1	0.613	1
Del_4q28.2	Del_21q22.2	0.613	1
FAM47C	18p-Del	0.615	1
ATM	8p-Amp	0.616	1
ATM	Del_15q21.3	0.616	1
FOXA1	12p-Del	0.616	1
7q-Amp	12p-Del	0.616	1
7q-Amp	Del_15q21.3	0.616	1
8p-Amp	Del_1q42.3	0.616	1
ATM	Del_5q11.2	0.618	1
ATM	8p-Del	0.622	1
7q-Amp	8p-Del	0.622	1
CTNNB1	Amp_7p14.3	0.623	1
PTEN	Del_1p22.1	0.623	1
PTEN	Del_9p23	0.623	1
PTEN	Del_19q13.2	0.623	1
PIK3CA	Amp_7p14.3	0.623	1
Amp_7p14.3	Del_1p22.1	0.623	1
Amp_7q22.1	Del_1p22.1	0.623	1
Amp_7q22.1	Del_9p23	0.623	1
OR4D5	TP53	0.625	1
OR4D5	18q-Del	0.625	1
TP53	MED15	0.625	1
TP53	TP53BP1	0.625	1
TP53	Xq-Del	0.625	1
TP53	Amp_11q13.2	0.625	1
TP53BP1	18q-Del	0.625	1
18q-Del	Amp_11q13.2	0.625	1
8p-Del	Amp_Xq27.1	0.626	1
LMOD2	Del_12p13.1	0.627	1
RNF31	Del_12p13.1	0.627	1
12p-Del	Del_18q23	0.627	1
CTNNB1	Del_21q22.3	0.628	1
Del_1p22.1	Del_21q22.3	0.628	1
BRAF	Del_2q22.3	0.629	1
BRAF	Del_5q13.2	0.629	1
LILRB5	Del_2q22.3	0.629	1
NTM	Del_8p23.2	0.629	1
OR4D5	Del_8p23.2	0.629	1
MED15	Del_8p23.2	0.629	1
RPTN	Del_2q22.3	0.629	1
RPTN	Del_5q13.2	0.629	1
ZMYM3	8q-Amp	0.629	1
ZMYM3	Del_2q22.3	0.629	1
ZMYM3	Del_5q13.2	0.629	1
3q-Amp	8q-Amp	0.629	1
3q-Amp	Del_5q13.2	0.629	1
8q-Amp	Del_6p25.1	0.629	1
6q-Del	Del_5q13.2	0.629	1
Xq-Del	Del_8p23.2	0.629	1
Amp_Xp22.11	Del_2q22.3	0.629	1
Amp_Xp22.11	Del_5q13.2	0.629	1
IDH1	Del_5q11.2	0.63	1
NKX3-1	Del_5q11.2	0.63	1
CDKN1B	Del_5q11.2	0.63	1
SMG7	Del_5q11.2	0.63	1
ZNF709	Del_5q11.2	0.63	1
Amp_Xp21.1	Del_5q11.2	0.63	1
PTEN	SPOP	0.635	1
17p-Del	Amp_Xq27.1	0.635	1
Amp_9q33.3	Del_11q23.2	0.635	1
Amp_Xq27.1	Del_11q23.2	0.635	1
FAM47C	7p-Amp	0.636	1
FAM47C	Amp_3q26.2	0.636	1
7q-Amp	Del_3p13	0.636	1
7q-Amp	Del_17q21.31	0.636	1
Del_1q42.3	Del_17q21.31	0.636	1
OR4D5	Del_13q14.13	0.637	1
TP53BP1	Del_13q14.13	0.637	1
Amp_Xq21.1	Del_13q14.13	0.637	1
Del_12q24.32	Del_13q14.13	0.637	1
TP53BP1	16q-Del	0.638	1
16q-Del	Amp_Xq21.1	0.638	1
TP53	7p-Amp	0.64	1
TP53	Amp_3q26.2	0.64	1
IDH1	Del_3p13	0.641	1
IDH1	Del_17q21.31	0.641	1
NKX3-1	Del_17q21.31	0.641	1
CNTNAP1	Del_3p13	0.641	1
CNTNAP1	Del_17q21.31	0.641	1
MLLT10	Del_3p13	0.641	1
MLLT10	Del_17q21.31	0.641	1
SMG7	Del_3p13	0.641	1
SMG7	Del_17q21.31	0.641	1
TCEB3	Del_3p13	0.641	1
TNRC18	Del_17q21.31	0.641	1
ZNF709	Del_17q21.31	0.641	1
Amp_Xp21.1	Del_17q21.31	0.641	1
Amp_Xq25	Del_3p13	0.641	1
Amp_Xq25	Del_17q21.31	0.641	1
8p-Amp	Del_21q22.2	0.642	1
12p-Del	13q-Del	0.642	1
12p-Del	Del_4q28.2	0.642	1
13q-Del	Del_15q21.3	0.642	1
Amp_3q21.3	Del_15q21.3	0.642	1
Del_15q21.3	Del_21q22.2	0.642	1
10q-Del	Del_6q14.3	0.643	1
17p-Del	Del_2q22.1	0.643	1
22q-Del	Del_6q14.3	0.643	1
BRAF	Del_1p31.3	0.645	1
FOXA1	Del_8p21.3	0.645	1
LILRB5	Del_1p31.3	0.645	1
CDK12	Del_1p31.3	0.645	1
KDM6A	Del_1p31.3	0.645	1
RPTN	Del_1p31.3	0.645	1
ZMYM3	Del_1p31.3	0.645	1
Amp_1q22	Del_1p31.3	0.645	1
ATM	CTNNB1	0.647	1
ATM	PIK3CA	0.647	1
ATM	Del_1p22.1	0.647	1
CTNNB1	Del_1q42.3	0.647	1
FOXA1	Del_1p22.1	0.647	1
FOXA1	Del_9p23	0.647	1
FOXA1	Del_19q13.2	0.647	1
PIK3CA	Del_1q42.3	0.647	1
7q-Amp	Del_1p22.1	0.647	1
3p-Amp	Del_10q23.31	0.649	1
Amp_15q11.2	Del_10q23.31	0.649	1
IDH1	Amp_8q22.1	0.652	1
IDH1	Amp_8q24.21	0.652	1
IDH1	Del_5q21.1	0.652	1
NKX3-1	Del_5q21.1	0.652	1
CDKN1B	Amp_8q22.1	0.652	1
CDKN1B	Amp_8q24.21	0.652	1
CDKN1B	Del_5q21.1	0.652	1
TCEB3	Amp_8q22.1	0.652	1
TCEB3	Amp_8q24.21	0.652	1
TCEB3	Del_5q21.1	0.652	1
ZNF709	Del_5q21.1	0.652	1
Amp_8q22.1	Amp_Xq25	0.652	1
Amp_8q24.21	Amp_Xp21.1	0.652	1
Amp_8q24.21	Amp_Xq25	0.652	1
Amp_Xp21.1	Del_5q21.1	0.652	1
Amp_Xq25	Del_5q21.1	0.652	1
OR4D5	Del_21q22.3	0.653	1
MED15	Del_21q22.3	0.653	1
ATM	Amp_8q24.21	0.654	1
18p-Del	Amp_Xq27.1	0.654	1
PTEN	FAM47C	0.657	1
FAM47C	Amp_7p14.3	0.657	1
FAM47C	Amp_7q22.1	0.657	1
12p-Del	Del_18q21.31	0.657	1
Del_2q22.1	Del_10q23.31	0.659	1
LILRB5	Del_6q14.3	0.661	1
RPTN	Del_6q14.3	0.661	1
ZMYM3	Del_6q14.3	0.661	1
LMOD2	Del_18q23	0.662	1
1q-Amp	Del_18q23	0.662	1
Amp_13q12.11	Del_18q23	0.662	1
Del_1p22.1	Del_8p21.3	0.662	1
IDH1	SPOP	0.664	1
NKX3-1	SPOP	0.664	1
SPOP	CDKN1B	0.664	1
SPOP	SMG7	0.664	1
SPOP	TCEB3	0.664	1
SPOP	ZNF709	0.664	1
SPOP	Amp_Xp21.1	0.664	1
Del_11q23.2	Del_18q23	0.664	1
ATM	Del_17p13.1	0.665	1
7q-Amp	Del_17p13.1	0.665	1
Del_5q21.1	Del_8p21.3	0.665	1
NTM	Del_2q22.1	0.666	1
OR4D5	Del_2q22.1	0.666	1
Amp_Xq21.1	Del_2q22.1	0.666	1
Del_2q22.3	Del_11q23.2	0.667	1
Del_3p13	Del_5q11.2	0.667	1
3p-Amp	8p-Del	0.668	1
3p-Amp	Del_16q22.3	0.668	1
10q-Del	Del_16q22.3	0.668	1
8p-Del	Amp_15q11.2	0.668	1
TP53	Del_13q22.1	0.669	1
8p-Amp	12p-Del	0.669	1
12p-Del	Del_15q21.3	0.669	1
BRAF	Del_10q23.31	0.671	1
CTNNB1	Amp_3q21.3	0.671	1
CTNNB1	Del_21q22.2	0.671	1
PIK3CA	Amp_3q21.3	0.671	1
PIK3CA	Del_4q28.2	0.671	1
PIK3CA	Del_21q22.2	0.671	1
RPTN	Del_10q23.31	0.671	1
13q-Del	Del_1p22.1	0.671	1
13q-Del	Del_11q22.3	0.671	1
6q-Del	Del_10q23.31	0.671	1
Amp_3q21.3	Del_1p22.1	0.671	1
Amp_17q23.2	Del_8p21.3	0.671	1
Amp_Xp22.11	Del_10q23.31	0.671	1
Del_4q28.2	Del_9p23	0.671	1
Del_4q28.2	Del_19q13.2	0.671	1
Del_5q21.1	Del_16q22.3	0.672	1
ATM	SPOP	0.673	1
7p-Amp	Amp_Xq27.1	0.673	1
PTEN	TP53	0.674	1
TP53	Amp_7p14.3	0.674	1
Amp_14q21.1	Del_8p23.2	0.675	1
13q-Del	Del_3p13	0.677	1
Del_17q21.31	Del_21q22.2	0.677	1
BRAF	Del_11q23.2	0.678	1
LILRB5	17p-Del	0.678	1
LILRB5	Del_11q23.2	0.678	1
CDK12	17p-Del	0.678	1
KDM6A	17p-Del	0.678	1
RPTN	17p-Del	0.678	1
RPTN	Del_11q23.2	0.678	1
ZMYM3	17p-Del	0.678	1
ZMYM3	Del_11q23.2	0.678	1
17p-Del	Amp_1q22	0.678	1
8p-Del	Del_4q28.2	0.678	1
Amp_Xp22.11	Del_11q23.2	0.678	1
Del_6p25.1	Del_11q23.2	0.678	1
ATM	FAM47C	0.679	1
ATM	Amp_8p11.23	0.679	1
ATM	Amp_14q21.1	0.679	1
FOXA1	FAM47C	0.679	1
FOXA1	Amp_8p11.23	0.679	1
FAM47C	7q-Amp	0.679	1
FAM47C	Del_1q42.3	0.679	1
Amp_8p11.23	Del_1q42.3	0.679	1
LMOD2	Del_18q21.31	0.68	1
NTM	8q-Amp	0.68	1
NTM	Del_2q22.3	0.68	1
NTM	Del_5q13.2	0.68	1
OR4D5	Del_2q22.3	0.68	1
OR4D5	Del_5q13.2	0.68	1
MED15	8q-Amp	0.68	1
MED15	Del_2q22.3	0.68	1
TP53BP1	Del_2q22.3	0.68	1
1q-Amp	Del_18q21.31	0.68	1
8q-Amp	Amp_Xq21.1	0.68	1
8q-Amp	Del_12q24.32	0.68	1
Amp_13q12.11	Del_18q21.31	0.68	1
Amp_Xq21.1	Del_5q13.2	0.68	1
Del_2q22.1	Del_8p21.3	0.681	1
8q-Amp	Del_3p13	0.682	1
8q-Amp	Del_17q21.31	0.682	1
Del_2q22.3	Del_17q21.31	0.682	1
Amp_8p11.23	Del_13q14.13	0.685	1
Amp_14q21.1	Del_13q14.13	0.685	1
12p-Del	Del_6q14.3	0.686	1
IDH1	TP53	0.687	1
NKX3-1	TP53	0.687	1
NKX3-1	18q-Del	0.687	1
TP53	CDKN1B	0.687	1
TP53	CNTNAP1	0.687	1
TP53	ZNF709	0.687	1
TP53	Amp_Xp21.1	0.687	1
TP53	Amp_Xq25	0.687	1
CDKN1B	18q-Del	0.687	1
CNTNAP1	18q-Del	0.687	1
SMG7	18q-Del	0.687	1
TCEB3	18q-Del	0.687	1
ZNF709	18q-Del	0.687	1
3p-Amp	Del_17p13.1	0.687	1
18q-Del	Amp_Xq25	0.687	1
Amp_15q11.2	Del_17p13.1	0.687	1
BRAF	Del_8p21.3	0.689	1
LILRB5	Del_8p21.3	0.689	1
KDM6A	Del_8p21.3	0.689	1
Amp_1q22	Del_8p21.3	0.689	1
Del_6p25.1	Del_8p21.3	0.689	1
Del_1p31.3	Del_11q23.2	0.691	1
PTEN	Amp_9q33.3	0.693	1
PTEN	Amp_Xq27.1	0.693	1
Amp_7p14.3	Amp_Xq27.1	0.693	1
Amp_7q22.1	Amp_Xq27.1	0.693	1
TP53BP1	Del_16q24.1	0.694	1
22q-Del	Del_13q22.1	0.694	1
Amp_8q22.1	Del_21q22.2	0.694	1
Amp_8q24.21	Del_21q22.2	0.694	1
Amp_15q11.2	Del_13q22.1	0.694	1
Del_5q21.1	Del_21q22.2	0.694	1
NTM	Del_1p31.3	0.695	1
OR4D5	Del_1p31.3	0.695	1
MED15	Del_1p31.3	0.695	1
TP53BP1	Del_1p31.3	0.695	1
Xq-Del	Del_1p31.3	0.695	1
Amp_11q13.2	Del_1p31.3	0.695	1
Amp_Xq21.1	Del_1p31.3	0.695	1
BRAF	18p-Del	0.696	1
CDK12	18p-Del	0.696	1
KDM6A	18p-Del	0.696	1
RPTN	18p-Del	0.696	1
ZMYM3	18p-Del	0.696	1
3q-Amp	18p-Del	0.696	1
18p-Del	Amp_1q22	0.696	1
18p-Del	Amp_Xp22.11	0.696	1
18p-Del	Del_6p25.1	0.696	1
CTNNB1	12p-Del	0.697	1
12p-Del	Del_1p22.1	0.697	1
12p-Del	Del_11q22.3	0.697	1
Del_15q21.3	Del_19q13.2	0.697	1
Del_3p13	Del_17p13.1	0.698	1
Del_17p13.1	Del_17q21.31	0.698	1
IDH1	16q-Del	0.699	1
NKX3-1	16q-Del	0.699	1
CDKN1B	16q-Del	0.699	1
CNTNAP1	16q-Del	0.699	1
MLLT10	16q-Del	0.699	1
SMG7	16q-Del	0.699	1
TNRC18	16q-Del	0.699	1
16q-Del	Amp_Xq25	0.699	1
BRAF	8p-Del	0.7	1
BRAF	Del_16q22.3	0.7	1
LILRB5	8p-Del	0.7	1
CDK12	Del_16q22.3	0.7	1
KDM6A	Del_16q22.3	0.7	1
RPTN	8p-Del	0.7	1
3q-Amp	8p-Del	0.7	1
6q-Del	Del_16q22.3	0.7	1
8p-Del	Amp_Xp22.11	0.7	1
FAM47C	13q-Del	0.702	1
FAM47C	Amp_3q21.3	0.702	1
FAM47C	Del_4q28.2	0.702	1
13q-Del	Amp_14q21.1	0.702	1
Amp_8p11.23	Del_21q22.2	0.702	1
Amp_14q21.1	Del_4q28.2	0.702	1
Del_2q22.3	Del_10q23.31	0.703	1
Del_5q13.2	Del_10q23.31	0.703	1
FAM47C	Del_21q22.3	0.704	1
CTNNB1	Del_18q21.31	0.705	1
KIDINS220	Del_5q11.2	0.707	1
LMOD2	Del_5q11.2	0.707	1
RNF31	Del_5q11.2	0.707	1
8q-Del	Del_5q11.2	0.707	1
TP53	7q-Amp	0.709	1
Del_5q13.2	Del_21q22.3	0.709	1
SPOP	13q-Del	0.711	1
BRAF	7p-Amp	0.713	1
BRAF	Amp_3q26.2	0.713	1
KDM6A	Amp_3q26.2	0.713	1
RPTN	7p-Amp	0.713	1
ZMYM3	7p-Amp	0.713	1
ZMYM3	Amp_3q26.2	0.713	1
Del_1p31.3	Del_3p13	0.713	1
FOXA1	Amp_Xq27.1	0.714	1
7q-Amp	Amp_Xq27.1	0.714	1
Amp_Xq27.1	Del_1q42.3	0.714	1
KIDINS220	Del_3p13	0.717	1
KIDINS220	Del_17q21.31	0.717	1
LMOD2	Del_3p13	0.717	1
LMOD2	Del_17q21.31	0.717	1
SMAD4	Del_3p13	0.717	1
SMAD4	Del_17q21.31	0.717	1
EDC4	Del_3p13	0.717	1
EDC4	Del_17q21.31	0.717	1
RNF31	Del_3p13	0.717	1
RNF31	Del_17q21.31	0.717	1
1q-Amp	Del_17q21.31	0.717	1
9q-Amp	Del_3p13	0.717	1
9q-Amp	Del_17q21.31	0.717	1
Amp_12q23.1	Del_3p13	0.717	1
Amp_12q23.1	Del_17q21.31	0.717	1
Amp_13q12.11	Del_3p13	0.717	1
Amp_13q12.11	Del_17q21.31	0.717	1
Amp_16q11.2	Del_17q21.31	0.717	1
8q-Amp	Del_12p13.1	0.718	1
Amp_8q22.1	Del_3p13	0.718	1
Amp_8q22.1	Del_17q21.31	0.718	1
Amp_8q24.21	Del_3p13	0.718	1
Del_11q23.2	Del_17p13.1	0.718	1
Del_3p13	Del_13q22.1	0.719	1
Del_3p13	Del_15q21.3	0.719	1
Del_13q14.13	Del_21q22.2	0.721	1
CTNNB1	Del_1p22.1	0.723	1
CTNNB1	Del_9p23	0.723	1
CTNNB1	Del_19q13.2	0.723	1
IDH1	Del_2q22.1	0.723	1
CDKN1B	Del_2q22.1	0.723	1
CNTNAP1	Del_2q22.1	0.723	1
MLLT10	Del_2q22.1	0.723	1
PIK3CA	Del_9p23	0.723	1
PIK3CA	Del_11q22.3	0.723	1
SMG7	Del_2q22.1	0.723	1
TCEB3	Del_2q22.1	0.723	1
TNRC18	Del_2q22.1	0.723	1
ZNF709	Del_2q22.1	0.723	1
Amp_Xp21.1	Del_2q22.1	0.723	1
Amp_Xq25	Del_2q22.1	0.723	1
Del_1p22.1	Del_9p23	0.723	1
Del_9p23	Del_19q13.2	0.723	1
NTM	17p-Del	0.724	1
NTM	Del_11q23.2	0.724	1
OR4D5	17p-Del	0.724	1
OR4D5	Del_11q23.2	0.724	1
MED15	Del_11q23.2	0.724	1
TP53BP1	17p-Del	0.724	1
17p-Del	Xq-Del	0.724	1
17p-Del	Amp_11q13.2	0.724	1
17p-Del	Del_11p11.2	0.724	1
Amp_Xq21.1	Del_11q23.2	0.724	1
8q-Amp	Amp_3q26.2	0.725	1
Amp_3q26.2	Del_2q22.3	0.725	1
KIDINS220	Amp_8q22.1	0.726	1
KIDINS220	Amp_8q24.21	0.726	1
LMOD2	Amp_8q22.1	0.726	1
LMOD2	Amp_8q24.21	0.726	1
LMOD2	Del_5q21.1	0.726	1
EDC4	Amp_8q24.21	0.726	1
FAM47C	8p-Amp	0.726	1
FAM47C	12p-Del	0.726	1
FAM47C	Del_15q21.3	0.726	1
RNF31	Amp_8q22.1	0.726	1
RNF31	Amp_8q24.21	0.726	1
RNF31	Del_5q21.1	0.726	1
1q-Amp	Amp_8q22.1	0.726	1
8p-Amp	Amp_14q21.1	0.726	1
12p-Del	Amp_8p11.23	0.726	1
12p-Del	Amp_14q21.1	0.726	1
8q-Del	Amp_8q22.1	0.726	1
8q-Del	Amp_8q24.21	0.726	1
8q-Del	Del_5q21.1	0.726	1
Amp_8p11.23	Del_15q21.3	0.726	1
Amp_14q21.1	Del_15q21.3	0.726	1
ATM	16q-Del	0.728	1
BRAF	Del_17p13.1	0.728	1
FOXA1	16q-Del	0.728	1
LILRB5	Del_17p13.1	0.728	1
KDM6A	Del_17p13.1	0.728	1
3q-Amp	Del_17p13.1	0.728	1
Amp_1q22	Del_17p13.1	0.728	1
Amp_8p11.23	Del_18q23	0.728	1
Del_13q22.1	Del_21q22.2	0.729	1
BRAF	PTEN	0.731	1
BRAF	Amp_7p14.3	0.731	1
BRAF	Amp_7q22.1	0.731	1
LILRB5	PTEN	0.731	1
PTEN	CDK12	0.731	1
PTEN	RPTN	0.731	1
PTEN	3q-Amp	0.731	1
PTEN	Amp_1q22	0.731	1
RPTN	Amp_7p14.3	0.731	1
RPTN	Amp_7q22.1	0.731	1
ZMYM3	Amp_7p14.3	0.731	1
ZMYM3	Amp_7q22.1	0.731	1
Amp_7q22.1	Del_6p25.1	0.731	1
3p-Amp	Del_12p13.1	0.733	1
22q-Del	Del_12p13.1	0.733	1
Amp_4q13.3	Del_12p13.1	0.733	1
Amp_8q22.1	Del_1p31.3	0.733	1
Amp_15q11.2	Del_12p13.1	0.733	1
Del_1p31.3	Del_5q21.1	0.733	1
12p-Del	Del_5q21.1	0.734	1
13q-Del	Amp_Xq27.1	0.734	1
Amp_3q21.3	Amp_Xq27.1	0.734	1
Amp_8q22.1	Del_15q21.3	0.734	1
Amp_8q24.21	Del_15q21.3	0.734	1
Amp_Xq27.1	Del_4q28.2	0.734	1
Del_5q21.1	Del_15q21.3	0.734	1
IDH1	8q-Amp	0.735	1
IDH1	Del_2q22.3	0.735	1
IDH1	Del_5q13.2	0.735	1
NKX3-1	8q-Amp	0.735	1
NKX3-1	Del_5q13.2	0.735	1
CDKN1B	8q-Amp	0.735	1
CDKN1B	Del_2q22.3	0.735	1
CDKN1B	Del_5q13.2	0.735	1
CNTNAP1	Del_2q22.3	0.735	1
MLLT10	Del_2q22.3	0.735	1
SMG7	Del_2q22.3	0.735	1
SMG7	Del_5q13.2	0.735	1
TCEB3	8q-Amp	0.735	1
TCEB3	Del_2q22.3	0.735	1
TNRC18	Del_2q22.3	0.735	1
TNRC18	Del_5q13.2	0.735	1
ZNF709	Del_2q22.3	0.735	1
ZNF709	Del_5q13.2	0.735	1
8q-Amp	Amp_Xp21.1	0.735	1
8q-Amp	Amp_Xq25	0.735	1
Amp_8q24.21	Del_21q22.3	0.735	1
Amp_Xp21.1	Del_2q22.3	0.735	1
Amp_Xp21.1	Del_5q13.2	0.735	1
Amp_Xq25	Del_2q22.3	0.735	1
KIDINS220	SPOP	0.736	1
LMOD2	SPOP	0.736	1
SPOP	EDC4	0.736	1
SPOP	RNF31	0.736	1
SPOP	1q-Amp	0.736	1
SPOP	8q-Del	0.736	1
SPOP	Amp_12q23.1	0.736	1
SPOP	Amp_13q12.11	0.736	1
SPOP	Amp_16q11.2	0.736	1
CDKN1B	Del_8p23.2	0.736	1
MLLT10	Del_8p23.2	0.736	1
SMG7	Del_8p23.2	0.736	1
ZNF709	Del_8p23.2	0.736	1
Amp_Xq25	Del_8p23.2	0.736	1
CDK12	Del_13q22.1	0.738	1
ZMYM3	Del_13q22.1	0.738	1
Amp_Xp22.11	Del_13q22.1	0.738	1
OR4D5	18p-Del	0.739	1
TP53BP1	18p-Del	0.739	1
18p-Del	Xq-Del	0.739	1
18p-Del	Amp_11q13.2	0.739	1
18p-Del	Amp_Xq21.1	0.739	1
17p-Del	Del_11q23.2	0.74	1
NKX3-1	Del_13q14.13	0.742	1
SMG7	Del_13q14.13	0.742	1
TNRC18	Del_13q14.13	0.742	1
Amp_Xp21.1	Del_13q14.13	0.742	1
NTM	Del_6q14.3	0.743	1
MED15	Del_6q14.3	0.743	1
13q-Del	Del_21q22.3	0.743	1
Amp_3q21.3	Del_21q22.3	0.743	1
Amp_8q22.1	Del_5q21.1	0.743	1
TP53	Amp_3q21.3	0.744	1
TP53	Del_4q28.2	0.744	1
18q-Del	Del_21q22.2	0.744	1
CTNNB1	Del_5q11.2	0.746	1
Amp_3q26.2	Del_1p31.3	0.746	1
CTNNB1	Del_6q14.3	0.747	1
IDH1	Del_1p31.3	0.747	1
LMOD2	Del_8p21.3	0.747	1
SMAD4	Del_8p21.3	0.747	1
CDKN1B	Del_1p31.3	0.747	1
CNTNAP1	Del_1p31.3	0.747	1
MLLT10	Del_1p31.3	0.747	1
PIK3CA	Del_6q14.3	0.747	1
RNF31	Del_8p21.3	0.747	1
SMG7	Del_1p31.3	0.747	1
TCEB3	Del_1p31.3	0.747	1
ZNF709	Del_1p31.3	0.747	1
Del_6q14.3	Del_19q13.2	0.747	1
Amp_17q23.2	Del_8p23.2	0.748	1
ATM	BRAF	0.749	1
ATM	KDM6A	0.749	1
ATM	RPTN	0.749	1
ATM	ZMYM3	0.749	1
ATM	Amp_1q22	0.749	1
ATM	Del_6p25.1	0.749	1
BRAF	FOXA1	0.749	1
BRAF	7q-Amp	0.749	1
BRAF	Del_1q42.3	0.749	1
FOXA1	KDM6A	0.749	1
FOXA1	ZMYM3	0.749	1
FOXA1	Amp_Xp22.11	0.749	1
LILRB5	Del_1q42.3	0.749	1
SPOP	8p-Amp	0.749	1
SPOP	Del_15q21.3	0.749	1
CDK12	Del_1q42.3	0.749	1
KDM6A	Del_1q42.3	0.749	1
RPTN	7q-Amp	0.749	1
RPTN	Del_1q42.3	0.749	1
ZMYM3	7q-Amp	0.749	1
ZMYM3	Del_1q42.3	0.749	1
3q-Amp	Del_1q42.3	0.749	1
7q-Amp	Del_6p25.1	0.749	1
Amp_1q22	Del_1q42.3	0.749	1
Amp_Xp22.11	Del_1q42.3	0.749	1
Del_17q21.31	Del_18q23	0.749	1
CTNNB1	FAM47C	0.75	1
CTNNB1	Amp_8p11.23	0.75	1
CTNNB1	Amp_14q21.1	0.75	1
FAM47C	PIK3CA	0.75	1
FAM47C	Del_1p22.1	0.75	1
FAM47C	Del_9p23	0.75	1
FAM47C	Del_11q22.3	0.75	1
PIK3CA	Amp_8p11.23	0.75	1
PIK3CA	Amp_14q21.1	0.75	1
Amp_8p11.23	Del_1p22.1	0.75	1
Amp_8p11.23	Del_19q13.2	0.75	1
Amp_14q21.1	Del_1p22.1	0.75	1
Amp_14q21.1	Del_9p23	0.75	1
Amp_14q21.1	Del_19q13.2	0.75	1
Amp_14q21.1	Del_16q24.1	0.751	1
Del_10q23.31	Del_12q24.32	0.751	1
Amp_8p11.23	Del_18q21.31	0.752	1
Amp_17q23.2	Del_13q14.13	0.752	1
Amp_20q13.2	Del_13q14.13	0.752	1
KIDINS220	18q-Del	0.755	1
LMOD2	TP53	0.755	1
LMOD2	18q-Del	0.755	1
NKX3-1	Del_21q22.3	0.755	1
NTM	7p-Amp	0.755	1
NTM	Amp_3q26.2	0.755	1
OR4D5	7p-Amp	0.755	1
OR4D5	Amp_3q26.2	0.755	1
TP53	1q-Amp	0.755	1
TP53	9q-Amp	0.755	1
TP53	Amp_13q12.11	0.755	1
CDKN1B	Del_21q22.3	0.755	1
MED15	7p-Amp	0.755	1
RNF31	18q-Del	0.755	1
TCEB3	Del_21q22.3	0.755	1
TP53BP1	Amp_3q26.2	0.755	1
1q-Amp	18q-Del	0.755	1
7p-Amp	Amp_Xq21.1	0.755	1
18q-Del	Amp_13q12.11	0.755	1
Xq-Del	Amp_3q26.2	0.755	1
Amp_3q26.2	Amp_Xq21.1	0.755	1
8p-Amp	Amp_Xq27.1	0.756	1
12p-Del	Amp_Xq27.1	0.756	1
Amp_9q33.3	Del_15q21.3	0.756	1
Amp_Xq27.1	Del_15q21.3	0.756	1
Del_1p22.1	Del_10q23.31	0.757	1
PTEN	Del_6q14.3	0.758	1
Del_2q22.1	Del_18q23	0.758	1
PIK3CA	Del_17q21.31	0.76	1
3p-Amp	Del_18q23	0.76	1
10p-Del	Del_21q22.3	0.76	1
Amp_15q11.2	Del_18q23	0.76	1
Amp_17q23.2	Del_21q22.3	0.76	1
Amp_20q13.2	Del_21q22.3	0.76	1
Del_3p13	Del_11q22.3	0.76	1
Del_17q21.31	Del_19q13.2	0.76	1
16q-Del	Del_21q22.2	0.761	1
Amp_Xq27.1	Del_13q14.13	0.763	1
ATM	Del_2q22.1	0.764	1
KIDINS220	16q-Del	0.765	1
LMOD2	16q-Del	0.765	1
RNF31	16q-Del	0.765	1
16q-Del	Amp_12q23.1	0.765	1
BRAF	13q-Del	0.768	1
BRAF	Amp_3q21.3	0.768	1
BRAF	Del_4q28.2	0.768	1
BRAF	Del_21q22.2	0.768	1
LILRB5	13q-Del	0.768	1
LILRB5	Del_21q22.2	0.768	1
CDK12	13q-Del	0.768	1
CDK12	Del_4q28.2	0.768	1
CDK12	Del_21q22.2	0.768	1
KDM6A	Amp_3q21.3	0.768	1
KDM6A	Del_21q22.2	0.768	1
RPTN	13q-Del	0.768	1
RPTN	Del_21q22.2	0.768	1
ZMYM3	13q-Del	0.768	1
ZMYM3	Amp_3q21.3	0.768	1
ZMYM3	Del_4q28.2	0.768	1
3q-Amp	Del_21q22.2	0.768	1
6q-Del	Del_21q22.2	0.768	1
Amp_1q22	Del_21q22.2	0.768	1
Amp_Xp22.11	Del_4q28.2	0.768	1
Amp_Xp22.11	Del_21q22.2	0.768	1
Del_6p25.1	Del_21q22.2	0.768	1
NTM	PTEN	0.771	1
NTM	Amp_7q22.1	0.771	1
OR4D5	PTEN	0.771	1
OR4D5	Amp_7p14.3	0.771	1
OR4D5	Amp_7q22.1	0.771	1
PTEN	MED15	0.771	1
PTEN	TP53BP1	0.771	1
PTEN	Xq-Del	0.771	1
PTEN	Amp_11q13.2	0.771	1
PTEN	Amp_Xq21.1	0.771	1
PTEN	Del_11p11.2	0.771	1
PTEN	Del_12q24.32	0.771	1
MED15	Amp_7p14.3	0.771	1
MED15	Amp_7q22.1	0.771	1
TP53BP1	Amp_7q22.1	0.771	1
Amp_7p14.3	Amp_Xq21.1	0.771	1
Amp_7q22.1	Amp_Xq21.1	0.771	1
IDH1	17p-Del	0.773	1
IDH1	Del_11q23.2	0.773	1
NKX3-1	17p-Del	0.773	1
NKX3-1	Del_11q23.2	0.773	1
CDKN1B	17p-Del	0.773	1
CNTNAP1	17p-Del	0.773	1
CNTNAP1	Del_11q23.2	0.773	1
SMG7	Del_11q23.2	0.773	1
TCEB3	Del_11q23.2	0.773	1
TNRC18	Del_11q23.2	0.773	1
ZNF709	17p-Del	0.773	1
ZNF709	Del_11q23.2	0.773	1
17p-Del	Amp_Xq25	0.773	1
17p-Del	Del_3p13	0.773	1
18p-Del	Del_13q22.1	0.773	1
Amp_Xp21.1	Del_11q23.2	0.773	1
Amp_Xq25	Del_11q23.2	0.773	1
Del_3p13	Del_11q23.2	0.773	1
CTNNB1	Amp_8q22.1	0.774	1
CTNNB1	Amp_8q24.21	0.774	1
CTNNB1	Del_5q21.1	0.774	1
MED15	8p-Del	0.774	1
PIK3CA	Del_5q21.1	0.774	1
TP53BP1	Del_16q22.3	0.774	1
3p-Amp	Del_18q21.31	0.774	1
8p-Del	Amp_11q13.2	0.774	1
8p-Del	Del_12q24.32	0.774	1
Amp_3q26.2	Del_21q22.3	0.774	1
Amp_8q22.1	Del_1p22.1	0.774	1
Amp_8q24.21	Del_9p23	0.774	1
Amp_8q24.21	Del_19q13.2	0.774	1
Amp_11q13.2	Del_16q22.3	0.774	1
Amp_15q11.2	Del_18q21.31	0.774	1
Del_5q21.1	Del_9p23	0.774	1
Del_5q21.1	Del_19q13.2	0.774	1
FAM47C	Amp_8p11.23	0.775	1
FAM47C	Amp_14q21.1	0.775	1
Del_5q21.1	Del_18q23	0.775	1
Amp_7q22.1	Del_18q23	0.777	1
Del_6q14.3	Del_17p13.1	0.777	1
CTNNB1	Amp_9q33.3	0.778	1
CTNNB1	Amp_Xq27.1	0.778	1
TP53	8p-Del	0.778	1
PIK3CA	Amp_9q33.3	0.778	1
PIK3CA	Amp_Xq27.1	0.778	1
Amp_9q33.3	Del_9p23	0.778	1
Amp_Xq27.1	Del_1p22.1	0.778	1
Amp_Xq27.1	Del_9p23	0.778	1
Amp_Xq27.1	Del_11q22.3	0.778	1
Amp_Xq27.1	Del_19q13.2	0.778	1
10p-Del	Del_16q24.1	0.779	1
12p-Del	18q-Del	0.779	1
Amp_17q23.2	Del_16q24.1	0.779	1
Amp_20q13.2	Del_16q24.1	0.779	1
ATM	8q-Amp	0.782	1
ATM	Del_5q13.2	0.782	1
FOXA1	Del_2q22.3	0.782	1
FOXA1	Del_5q13.2	0.782	1
Amp_8q22.1	Del_10q23.31	0.783	1
LMOD2	Del_2q22.1	0.784	1
RNF31	Del_2q22.1	0.784	1
8q-Del	Del_2q22.1	0.784	1
Amp_12q23.1	Del_2q22.1	0.784	1
Amp_16q11.2	Del_2q22.1	0.784	1
IDH1	18p-Del	0.786	1
NKX3-1	18p-Del	0.786	1
CDKN1B	18p-Del	0.786	1
CNTNAP1	18p-Del	0.786	1
SMG7	18p-Del	0.786	1
TCEB3	18p-Del	0.786	1
TNRC18	18p-Del	0.786	1
ZNF709	18p-Del	0.786	1
18p-Del	Amp_Xp21.1	0.786	1
18p-Del	Amp_Xq25	0.786	1
ATM	NTM	0.787	1
ATM	OR4D5	0.787	1
ATM	MED15	0.787	1
ATM	TP53BP1	0.787	1
ATM	Xq-Del	0.787	1
ATM	Amp_11q13.2	0.787	1
ATM	Del_11p11.2	0.787	1
BRAF	12p-Del	0.787	1
BRAF	Del_15q21.3	0.787	1
CTNNB1	SPOP	0.787	1
CTNNB1	8p-Del	0.787	1
FOXA1	NTM	0.787	1
FOXA1	TP53BP1	0.787	1
FOXA1	Amp_Xq21.1	0.787	1
FOXA1	Del_12q24.32	0.787	1
LILRB5	Del_15q21.3	0.787	1
NTM	7q-Amp	0.787	1
NTM	Del_1q42.3	0.787	1
OR4D5	7q-Amp	0.787	1
OR4D5	Del_1q42.3	0.787	1
SPOP	Del_11q22.3	0.787	1
CDKN1B	Del_16q24.1	0.787	1
CDK12	8p-Amp	0.787	1
CDK12	12p-Del	0.787	1
CNTNAP1	Del_16q24.1	0.787	1
KDM6A	12p-Del	0.787	1
KDM6A	Del_15q21.3	0.787	1
MED15	7q-Amp	0.787	1
MLLT10	Del_16q24.1	0.787	1
PIK3CA	8p-Del	0.787	1
RPTN	8p-Amp	0.787	1
RPTN	12p-Del	0.787	1
RPTN	Del_15q21.3	0.787	1
SMG7	Del_16q24.1	0.787	1
TP53BP1	Del_1q42.3	0.787	1
ZMYM3	8p-Amp	0.787	1
ZMYM3	12p-Del	0.787	1
ZMYM3	Del_15q21.3	0.787	1
3q-Amp	8p-Amp	0.787	1
3q-Amp	12p-Del	0.787	1
3q-Amp	Del_15q21.3	0.787	1
7q-Amp	Amp_Xq21.1	0.787	1
8p-Amp	Del_6p25.1	0.787	1
12p-Del	6q-Del	0.787	1
12p-Del	Amp_1q22	0.787	1
12p-Del	Amp_Xp22.11	0.787	1
12p-Del	Del_6p25.1	0.787	1
6q-Del	Del_15q21.3	0.787	1
8p-Del	Del_1p22.1	0.787	1
8p-Del	Del_11q22.3	0.787	1
8p-Del	Del_19q13.2	0.787	1
Xq-Del	Del_1q42.3	0.787	1
Amp_1q22	Del_15q21.3	0.787	1
Amp_11q13.2	Del_1q42.3	0.787	1
Amp_Xp22.11	Del_15q21.3	0.787	1
Amp_Xq21.1	Del_1q42.3	0.787	1
Amp_Xq25	Del_16q24.1	0.787	1
Del_1q42.3	Del_11p11.2	0.787	1
Amp_14q21.1	Del_5q11.2	0.789	1
17p-Del	Del_5q21.1	0.79	1
Del_17q21.31	Del_18q21.31	0.791	1
18q-Del	Del_3p13	0.792	1
18q-Del	Del_17q21.31	0.792	1
BRAF	Del_12p13.1	0.793	1
LILRB5	Del_12p13.1	0.793	1
CDK12	Del_12p13.1	0.793	1
ZMYM3	Del_12p13.1	0.793	1
6q-Del	Del_12p13.1	0.793	1
Amp_1q22	Del_12p13.1	0.793	1
Amp_Xp22.11	Del_12p13.1	0.793	1
Del_6p25.1	Del_12p13.1	0.793	1
KIDINS220	8q-Amp	0.794	1
KIDINS220	Del_2q22.3	0.794	1
KIDINS220	Del_5q13.2	0.794	1
LMOD2	8q-Amp	0.794	1
LMOD2	Del_2q22.3	0.794	1
LMOD2	Del_5q13.2	0.794	1
SMAD4	Del_2q22.3	0.794	1
EDC4	Del_5q13.2	0.794	1
RNF31	8q-Amp	0.794	1
RNF31	Del_2q22.3	0.794	1
RNF31	Del_5q13.2	0.794	1
1q-Amp	Del_2q22.3	0.794	1
3p-Amp	Del_5q11.2	0.794	1
8q-Amp	8q-Del	0.794	1
10q-Del	Del_5q11.2	0.794	1
16q-Del	Del_15q21.3	0.794	1
22q-Del	Del_5q11.2	0.794	1
Amp_12q23.1	Del_2q22.3	0.794	1
Amp_15q11.2	Del_5q11.2	0.794	1
Amp_16q11.2	Del_2q22.3	0.794	1
Del_4q28.2	Del_16q24.1	0.794	1
NTM	Del_17p13.1	0.797	1
MED15	Del_17p13.1	0.797	1
Amp_Xq21.1	Del_17p13.1	0.797	1
NTM	Del_8p21.3	0.798	1
OR4D5	Del_8p21.3	0.798	1
MED15	Del_8p21.3	0.798	1
Xq-Del	Del_8p21.3	0.798	1
Amp_11q13.2	Del_8p21.3	0.798	1
Amp_Xq21.1	Del_8p21.3	0.798	1
IDH1	7p-Amp	0.799	1
IDH1	Amp_3q26.2	0.799	1
NKX3-1	7p-Amp	0.799	1
NKX3-1	Amp_3q26.2	0.799	1
CDKN1B	7p-Amp	0.799	1
CDKN1B	Amp_3q26.2	0.799	1
CNTNAP1	7p-Amp	0.799	1
CNTNAP1	Amp_3q26.2	0.799	1
MLLT10	7p-Amp	0.799	1
MLLT10	Amp_3q26.2	0.799	1
SMG7	7p-Amp	0.799	1
SMG7	Amp_3q26.2	0.799	1
TCEB3	7p-Amp	0.799	1
TCEB3	Amp_3q26.2	0.799	1
TNRC18	7p-Amp	0.799	1
TNRC18	Amp_3q26.2	0.799	1
ZNF709	7p-Amp	0.799	1
ZNF709	Amp_3q26.2	0.799	1
7p-Amp	Amp_Xq25	0.799	1
7p-Amp	Del_17p13.1	0.799	1
Amp_3q26.2	Amp_Xq25	0.799	1
Amp_3q26.2	Del_17p13.1	0.799	1
ATM	Del_1p31.3	0.8	1
FAM47C	Amp_9q33.3	0.8	1
Amp_8p11.23	Amp_Xq27.1	0.8	1
Amp_14q21.1	Amp_Xq27.1	0.8	1
FAM47C	Del_3p13	0.801	1
FAM47C	Del_17q21.31	0.801	1
3p-Amp	Del_3p13	0.801	1
3p-Amp	Del_17q21.31	0.801	1
10q-Del	Del_3p13	0.801	1
22q-Del	Del_17q21.31	0.801	1
Amp_4q13.3	Del_17q21.31	0.801	1
Amp_15q11.2	Del_3p13	0.801	1
Amp_15q11.2	Del_17q21.31	0.801	1
Amp_17q23.2	Del_6q14.3	0.802	1
Amp_20q13.2	Del_6q14.3	0.802	1
Del_4q28.2	Del_12p13.1	0.802	1
NTM	13q-Del	0.803	1
NTM	Amp_3q21.3	0.803	1
NTM	Del_4q28.2	0.803	1
NTM	Del_21q22.2	0.803	1
OR4D5	13q-Del	0.803	1
OR4D5	Amp_3q21.3	0.803	1
OR4D5	Del_21q22.2	0.803	1
MED15	13q-Del	0.803	1
MED15	Del_21q22.2	0.803	1
TP53BP1	Del_4q28.2	0.803	1
TP53BP1	Del_21q22.2	0.803	1
Xq-Del	Amp_3q21.3	0.803	1
Xq-Del	Del_21q22.2	0.803	1
Amp_3q21.3	Amp_Xq21.1	0.803	1
Amp_11q13.2	Del_21q22.2	0.803	1
Amp_Xq21.1	Del_4q28.2	0.803	1
Amp_Xq21.1	Del_21q22.2	0.803	1
Del_4q28.2	Del_12q24.32	0.803	1
Del_11p11.2	Del_21q22.2	0.803	1
Del_12q24.32	Del_21q22.2	0.803	1
KIDINS220	Del_1p31.3	0.804	1
LMOD2	Del_1p31.3	0.804	1
SMAD4	Del_1p31.3	0.804	1
RNF31	Del_1p31.3	0.804	1
1q-Amp	Del_1p31.3	0.804	1
9q-Amp	Del_1p31.3	0.804	1
Amp_12q23.1	Del_1p31.3	0.804	1
MED15	Del_13q22.1	0.805	1
8p-Del	Amp_7q22.1	0.805	1
Amp_7q22.1	Del_18q21.31	0.805	1
Amp_Xq21.1	Del_13q22.1	0.805	1
Del_12q24.32	Del_13q22.1	0.805	1
BRAF	CTNNB1	0.806	1
BRAF	PIK3CA	0.806	1
BRAF	Del_1p22.1	0.806	1
BRAF	Del_9p23	0.806	1
BRAF	Del_11q22.3	0.806	1
BRAF	Del_19q13.2	0.806	1
CTNNB1	LILRB5	0.806	1
CTNNB1	CDK12	0.806	1
CTNNB1	ZMYM3	0.806	1
CTNNB1	3q-Amp	0.806	1
CTNNB1	6q-Del	0.806	1
CTNNB1	Del_6p25.1	0.806	1
LILRB5	PIK3CA	0.806	1
LILRB5	Del_1p22.1	0.806	1
LILRB5	Del_9p23	0.806	1
LILRB5	Del_11q22.3	0.806	1
LILRB5	Del_19q13.2	0.806	1
CDK12	PIK3CA	0.806	1
CDK12	Del_1p22.1	0.806	1
CDK12	Del_9p23	0.806	1
CDK12	Del_19q13.2	0.806	1
KDM6A	PIK3CA	0.806	1
KDM6A	Del_1p22.1	0.806	1
KDM6A	Del_9p23	0.806	1
KDM6A	Del_19q13.2	0.806	1
PIK3CA	ZMYM3	0.806	1
PIK3CA	3q-Amp	0.806	1
PIK3CA	Del_6p25.1	0.806	1
RPTN	Del_1p22.1	0.806	1
RPTN	Del_9p23	0.806	1
RPTN	Del_11q22.3	0.806	1
RPTN	Del_19q13.2	0.806	1
ZMYM3	Del_1p22.1	0.806	1
ZMYM3	Del_9p23	0.806	1
ZMYM3	Del_11q22.3	0.806	1
3q-Amp	Del_1p22.1	0.806	1
3q-Amp	Del_9p23	0.806	1
3q-Amp	Del_11q22.3	0.806	1
10p-Del	Del_10q23.31	0.806	1
6q-Del	Del_9p23	0.806	1
Amp_1q22	Del_1p22.1	0.806	1
Amp_1q22	Del_19q13.2	0.806	1
Amp_17q23.2	Del_10q23.31	0.806	1
Amp_20q13.2	Del_10q23.31	0.806	1
Amp_Xp22.11	Del_1p22.1	0.806	1
Amp_Xp22.11	Del_9p23	0.806	1
Amp_Xp22.11	Del_11q22.3	0.806	1
Del_6p25.1	Del_9p23	0.806	1
Del_6p25.1	Del_11q22.3	0.806	1
Del_6p25.1	Del_19q13.2	0.806	1
3p-Amp	Amp_8q22.1	0.808	1
3p-Amp	Amp_8q24.21	0.808	1
10q-Del	Amp_8q22.1	0.808	1
10q-Del	Amp_8q24.21	0.808	1
10q-Del	Del_5q21.1	0.808	1
22q-Del	Amp_8q22.1	0.808	1
22q-Del	Amp_8q24.21	0.808	1
22q-Del	Del_5q21.1	0.808	1
Amp_4q13.3	Del_5q21.1	0.808	1
Amp_15q11.2	Del_5q21.1	0.808	1
18p-Del	Amp_3q26.2	0.809	1
8q-Amp	Amp_3q21.3	0.81	1
8q-Amp	Del_21q22.2	0.81	1
Amp_3q21.3	Del_2q22.3	0.81	1
TP53	Del_5q21.1	0.811	1
18q-Del	Del_5q21.1	0.811	1
IDH1	Amp_7p14.3	0.812	1
IDH1	Amp_7q22.1	0.812	1
NKX3-1	PTEN	0.812	1
NKX3-1	Amp_7p14.3	0.812	1
NKX3-1	Amp_7q22.1	0.812	1
PTEN	CDKN1B	0.812	1
PTEN	CNTNAP1	0.812	1
PTEN	MLLT10	0.812	1
PTEN	TCEB3	0.812	1
PTEN	ZNF709	0.812	1
PTEN	Amp_Xq25	0.812	1
PTEN	Del_11q23.2	0.812	1
CDKN1B	Amp_7p14.3	0.812	1
CDKN1B	Amp_7q22.1	0.812	1
CNTNAP1	Amp_7p14.3	0.812	1
CNTNAP1	Amp_7q22.1	0.812	1
MLLT10	Amp_7p14.3	0.812	1
MLLT10	Amp_7q22.1	0.812	1
SMG7	Amp_7p14.3	0.812	1
SMG7	Amp_7q22.1	0.812	1
TCEB3	Amp_7p14.3	0.812	1
TCEB3	Amp_7q22.1	0.812	1
TNRC18	Amp_7p14.3	0.812	1
TNRC18	Amp_7q22.1	0.812	1
ZNF709	Amp_7p14.3	0.812	1
ZNF709	Amp_7q22.1	0.812	1
17p-Del	Amp_7q22.1	0.812	1
Amp_7p14.3	Amp_Xq25	0.812	1
Amp_7q22.1	Amp_Xq25	0.812	1
Del_5q21.1	Del_16q24.1	0.812	1
FAM47C	Del_10q23.31	0.813	1
7q-Amp	Del_18q23	0.813	1
Amp_14q21.1	Del_10q23.31	0.813	1
CTNNB1	18q-Del	0.814	1
TP53	PIK3CA	0.814	1
TP53	Del_11q22.3	0.814	1
SPOP	10q-Del	0.815	1
SPOP	22q-Del	0.815	1
SPOP	Amp_4q13.3	0.815	1
SPOP	Amp_15q11.2	0.815	1
CTNNB1	Del_17p13.1	0.816	1
Amp_3q26.2	Del_5q11.2	0.816	1
Del_1p22.1	Del_17p13.1	0.816	1
Del_11q22.3	Del_17p13.1	0.816	1
10p-Del	Del_16q22.3	0.818	1
18p-Del	Amp_8q24.21	0.818	1
18p-Del	Del_5q21.1	0.818	1
8p-Del	Amp_17q23.2	0.818	1
Amp_17q23.2	Del_16q22.3	0.818	1
Amp_20q13.2	Del_16q22.3	0.818	1
NTM	8p-Amp	0.819	1
NTM	12p-Del	0.819	1
OR4D5	12p-Del	0.819	1
MED15	8p-Amp	0.819	1
MED15	12p-Del	0.819	1
MED15	Del_15q21.3	0.819	1
TP53BP1	12p-Del	0.819	1
TP53BP1	Del_15q21.3	0.819	1
8p-Amp	Amp_Xq21.1	0.819	1
8p-Amp	Del_12q24.32	0.819	1
12p-Del	Xq-Del	0.819	1
12p-Del	Amp_11q13.2	0.819	1
12p-Del	Amp_Xq21.1	0.819	1
12p-Del	Del_11p11.2	0.819	1
Amp_11q13.2	Del_15q21.3	0.819	1
Amp_Xq21.1	Del_15q21.3	0.819	1
TP53	Del_13q14.13	0.82	1
Amp_7p14.3	Del_21q22.3	0.823	1
Amp_9q33.3	Amp_Xq27.1	0.823	1
Del_10q23.31	Del_11q23.2	0.823	1
NKX3-1	Del_6q14.3	0.824	1
SPOP	Amp_14q21.1	0.824	1
CDKN1B	Del_6q14.3	0.824	1
MLLT10	Del_6q14.3	0.824	1
SMG7	Del_6q14.3	0.824	1
TCEB3	Del_6q14.3	0.824	1
TNRC18	Del_6q14.3	0.824	1
Del_6q14.3	Del_18q23	0.824	1
KIDINS220	Del_11q23.2	0.825	1
LMOD2	17p-Del	0.825	1
EDC4	Del_11q23.2	0.825	1
RNF31	17p-Del	0.825	1
RNF31	Del_11q23.2	0.825	1
1q-Amp	17p-Del	0.825	1
9q-Amp	17p-Del	0.825	1
9q-Amp	Del_11q23.2	0.825	1
17p-Del	Amp_13q12.11	0.825	1
8q-Del	Del_11q23.2	0.825	1
Del_1p22.1	Del_13q22.1	0.825	1
Del_10q23.31	Del_16q24.1	0.825	1
ATM	IDH1	0.826	1
ATM	NKX3-1	0.826	1
ATM	CNTNAP1	0.826	1
ATM	MLLT10	0.826	1
ATM	TCEB3	0.826	1
ATM	TNRC18	0.826	1
ATM	ZNF709	0.826	1
ATM	Amp_Xq25	0.826	1
BRAF	FAM47C	0.826	1
BRAF	Amp_8p11.23	0.826	1
BRAF	Amp_14q21.1	0.826	1
FOXA1	IDH1	0.826	1
FOXA1	NKX3-1	0.826	1
FOXA1	CDKN1B	0.826	1
FOXA1	MLLT10	0.826	1
FOXA1	TCEB3	0.826	1
FOXA1	ZNF709	0.826	1
FOXA1	Amp_Xp21.1	0.826	1
FOXA1	Amp_Xq25	0.826	1
IDH1	7q-Amp	0.826	1
IDH1	Del_1q42.3	0.826	1
LILRB5	FAM47C	0.826	1
LILRB5	Amp_14q21.1	0.826	1
NKX3-1	7q-Amp	0.826	1
NKX3-1	Del_1q42.3	0.826	1
CDKN1B	7q-Amp	0.826	1
CDK12	Amp_8p11.23	0.826	1
CNTNAP1	7q-Amp	0.826	1
CNTNAP1	Del_1q42.3	0.826	1
FAM47C	KDM6A	0.826	1
FAM47C	ZMYM3	0.826	1
FAM47C	3q-Amp	0.826	1
FAM47C	6q-Del	0.826	1
FAM47C	Amp_1q22	0.826	1
FAM47C	Amp_Xp22.11	0.826	1
FAM47C	Del_6p25.1	0.826	1
KDM6A	Amp_8p11.23	0.826	1
KDM6A	Amp_14q21.1	0.826	1
MLLT10	7q-Amp	0.826	1
MLLT10	Del_1q42.3	0.826	1
RPTN	Amp_8p11.23	0.826	1
RPTN	Amp_14q21.1	0.826	1
SMG7	7q-Amp	0.826	1
TCEB3	7q-Amp	0.826	1
TCEB3	Del_1q42.3	0.826	1
TNRC18	7q-Amp	0.826	1
TNRC18	Del_1q42.3	0.826	1
ZMYM3	Amp_8p11.23	0.826	1
ZMYM3	Amp_14q21.1	0.826	1
ZNF709	7q-Amp	0.826	1
ZNF709	Del_1q42.3	0.826	1
7q-Amp	Amp_Xq25	0.826	1
6q-Del	Amp_8p11.23	0.826	1
6q-Del	Amp_14q21.1	0.826	1
Amp_8p11.23	Amp_Xp22.11	0.826	1
Amp_8p11.23	Del_6p25.1	0.826	1
Amp_14q21.1	Del_6p25.1	0.826	1
Amp_Xp21.1	Del_1q42.3	0.826	1
Amp_Xq25	Del_1q42.3	0.826	1
Del_1p31.3	Del_4q28.2	0.826	1
Del_1p31.3	Del_21q22.2	0.826	1
CTNNB1	16q-Del	0.827	1
16q-Del	Del_9p23	0.827	1
BRAF	Del_18q23	0.829	1
LILRB5	Del_18q23	0.829	1
TP53	3p-Amp	0.829	1
TP53	Amp_15q11.2	0.829	1
3p-Amp	18q-Del	0.829	1
3q-Amp	Del_18q23	0.829	1
10p-Del	Del_17p13.1	0.829	1
18q-Del	Amp_15q11.2	0.829	1
8p-Del	Amp_8q22.1	0.829	1
Amp_1q22	Del_18q23	0.829	1
Amp_17q23.2	Del_17p13.1	0.829	1
Amp_20q13.2	Del_17p13.1	0.829	1
Del_6p25.1	Del_18q23	0.829	1
BRAF	Del_8p23.2	0.83	1
IDH1	Del_10q23.31	0.83	1
LILRB5	Del_8p23.2	0.83	1
NKX3-1	Del_10q23.31	0.83	1
PTEN	18p-Del	0.83	1
MLLT10	Del_10q23.31	0.83	1
TCEB3	Del_10q23.31	0.83	1
18p-Del	Amp_7p14.3	0.83	1
Amp_3q26.2	Del_3p13	0.83	1
Amp_Xq25	Del_10q23.31	0.83	1
Del_6p25.1	Del_8p23.2	0.83	1
Amp_Xq27.1	Del_5q11.2	0.831	1
Amp_17q23.2	Del_13q22.1	0.833	1
Amp_20q13.2	Del_13q22.1	0.833	1
CTNNB1	Del_8p23.2	0.834	1
Del_8p23.2	Del_11q22.3	0.834	1
Del_8p23.2	Del_19q13.2	0.834	1
ATM	Del_8p21.3	0.835	1
ATM	Del_11q23.2	0.835	1
KIDINS220	18p-Del	0.835	1
LMOD2	18p-Del	0.835	1
SMAD4	18p-Del	0.835	1
RNF31	18p-Del	0.835	1
1q-Amp	18p-Del	0.835	1
7q-Amp	17p-Del	0.835	1
18p-Del	Amp_13q12.11	0.835	1
CTNNB1	NTM	0.836	1
CTNNB1	OR4D5	0.836	1
CTNNB1	MED15	0.836	1
CTNNB1	TP53BP1	0.836	1
CTNNB1	Xq-Del	0.836	1
CTNNB1	Amp_11q13.2	0.836	1
CTNNB1	Amp_Xq21.1	0.836	1
CTNNB1	Del_12q24.32	0.836	1
NTM	PIK3CA	0.836	1
NTM	Del_1p22.1	0.836	1
NTM	Del_11q22.3	0.836	1
NTM	Del_19q13.2	0.836	1
OR4D5	PIK3CA	0.836	1
OR4D5	Del_1p22.1	0.836	1
OR4D5	Del_9p23	0.836	1
OR4D5	Del_11q22.3	0.836	1
OR4D5	Del_19q13.2	0.836	1
CDK12	Del_13q14.13	0.836	1
MED15	PIK3CA	0.836	1
MED15	Del_1p22.1	0.836	1
MED15	Del_9p23	0.836	1
MED15	Del_11q22.3	0.836	1
MED15	Del_19q13.2	0.836	1
PIK3CA	TP53BP1	0.836	1
PIK3CA	Xq-Del	0.836	1
PIK3CA	Amp_11q13.2	0.836	1
PIK3CA	Amp_Xq21.1	0.836	1
PIK3CA	Del_11p11.2	0.836	1
TP53BP1	Del_19q13.2	0.836	1
3p-Amp	16q-Del	0.836	1
10q-Del	16q-Del	0.836	1
16q-Del	22q-Del	0.836	1
16q-Del	Amp_15q11.2	0.836	1
Xq-Del	Del_9p23	0.836	1
Xq-Del	Del_19q13.2	0.836	1
Amp_1q22	Del_13q14.13	0.836	1
Amp_11q13.2	Del_1p22.1	0.836	1
Amp_11q13.2	Del_19q13.2	0.836	1
Amp_Xq21.1	Del_1p22.1	0.836	1
Amp_Xq21.1	Del_11q22.3	0.836	1
Amp_Xq21.1	Del_19q13.2	0.836	1
Del_1p22.1	Del_11p11.2	0.836	1
Del_9p23	Del_11p11.2	0.836	1
Del_10q23.31	Del_16q22.3	0.836	1
Del_11p11.2	Del_19q13.2	0.836	1
7q-Amp	Del_18q21.31	0.837	1
Amp_7p14.3	Del_17p13.1	0.837	1
8q-Amp	12p-Del	0.838	1
8q-Amp	Del_15q21.3	0.838	1
IDH1	13q-Del	0.839	1
IDH1	Amp_3q21.3	0.839	1
IDH1	Del_4q28.2	0.839	1
IDH1	Del_21q22.2	0.839	1
NKX3-1	13q-Del	0.839	1
NKX3-1	Amp_3q21.3	0.839	1
NKX3-1	Del_4q28.2	0.839	1
NKX3-1	Del_21q22.2	0.839	1
CDKN1B	Amp_3q21.3	0.839	1
CDKN1B	Del_21q22.2	0.839	1
CNTNAP1	13q-Del	0.839	1
CNTNAP1	Del_4q28.2	0.839	1
CNTNAP1	Del_21q22.2	0.839	1
MLLT10	13q-Del	0.839	1
MLLT10	Amp_3q21.3	0.839	1
MLLT10	Del_4q28.2	0.839	1
SMG7	Amp_3q21.3	0.839	1
SMG7	Del_4q28.2	0.839	1
SMG7	Del_21q22.2	0.839	1
TCEB3	13q-Del	0.839	1
TCEB3	Amp_3q21.3	0.839	1
TCEB3	Del_4q28.2	0.839	1
TNRC18	Del_4q28.2	0.839	1
TNRC18	Del_21q22.2	0.839	1
ZNF709	13q-Del	0.839	1
ZNF709	Amp_3q21.3	0.839	1
ZNF709	Del_4q28.2	0.839	1
13q-Del	Amp_Xq25	0.839	1
Amp_3q21.3	Amp_Xq25	0.839	1
Amp_Xp21.1	Del_4q28.2	0.839	1
Amp_Xp21.1	Del_21q22.2	0.839	1
Amp_Xq25	Del_4q28.2	0.839	1
Amp_Xq25	Del_21q22.2	0.839	1
Amp_9q33.3	Del_3p13	0.841	1
Del_1p22.1	Del_13q14.13	0.842	1
Del_11q23.2	Del_21q22.3	0.842	1
SMAD4	Del_8p23.2	0.843	1
RNF31	Del_8p23.2	0.843	1
1q-Amp	Del_8p23.2	0.843	1
9q-Amp	Del_8p23.2	0.843	1
Amp_13q12.11	Del_8p23.2	0.843	1
ATM	Del_16q22.3	0.844	1
FOXA1	Del_16q22.3	0.844	1
Amp_3q26.2	Del_5q21.1	0.844	1
KIDINS220	7p-Amp	0.845	1
KIDINS220	Amp_3q26.2	0.845	1
LMOD2	7p-Amp	0.845	1
LMOD2	Amp_3q26.2	0.845	1
SMAD4	Amp_3q26.2	0.845	1
EDC4	7p-Amp	0.845	1
EDC4	Amp_3q26.2	0.845	1
RNF31	7p-Amp	0.845	1
RNF31	Amp_3q26.2	0.845	1
1q-Amp	Amp_3q26.2	0.845	1
7p-Amp	8q-Del	0.845	1
7p-Amp	Amp_12q23.1	0.845	1
9q-Amp	Amp_3q26.2	0.845	1
8q-Del	Amp_3q26.2	0.845	1
Amp_3q26.2	Amp_12q23.1	0.845	1
BRAF	Amp_9q33.3	0.846	1
BRAF	Amp_Xq27.1	0.846	1
BRAF	Del_18q21.31	0.846	1
LILRB5	Amp_Xq27.1	0.846	1
LILRB5	Del_18q21.31	0.846	1
CDK12	Amp_Xq27.1	0.846	1
CDK12	Del_18q21.31	0.846	1
KDM6A	Amp_9q33.3	0.846	1
RPTN	Amp_9q33.3	0.846	1
RPTN	Amp_Xq27.1	0.846	1
ZMYM3	Amp_9q33.3	0.846	1
ZMYM3	Amp_Xq27.1	0.846	1
3q-Amp	Del_18q21.31	0.846	1
6q-Del	Amp_9q33.3	0.846	1
6q-Del	Amp_Xq27.1	0.846	1
Amp_1q22	Amp_Xq27.1	0.846	1
Amp_1q22	Del_18q21.31	0.846	1
Amp_3q21.3	Del_18q23	0.846	1
Amp_9q33.3	Del_6p25.1	0.846	1
Amp_Xp22.11	Amp_Xq27.1	0.846	1
Amp_Xq27.1	Del_6p25.1	0.846	1
Del_6p25.1	Del_18q21.31	0.846	1
Del_18q23	Del_21q22.2	0.846	1
KIDINS220	Del_13q14.13	0.847	1
LMOD2	Del_13q14.13	0.847	1
CDKN1B	8p-Del	0.847	1
CDKN1B	Del_16q22.3	0.847	1
SMG7	Del_16q22.3	0.847	1
TCEB3	Del_16q22.3	0.847	1
TNRC18	8p-Del	0.847	1
ZNF709	8p-Del	0.847	1
1q-Amp	Del_13q14.13	0.847	1
18q-Del	Amp_8p11.23	0.847	1
8p-Del	Amp_Xp21.1	0.847	1
Amp_12q23.1	Del_13q14.13	0.847	1
6q-Del	Del_21q22.3	0.848	1
Del_6q14.3	Del_21q22.2	0.848	1
NTM	Del_12p13.1	0.849	1
OR4D5	Del_12p13.1	0.849	1
Amp_Xq21.1	Del_12p13.1	0.849	1
Amp_Xq27.1	Del_5q21.1	0.85	1
10q-Del	Del_2q22.1	0.851	1
22q-Del	Del_2q22.1	0.851	1
Amp_4q13.3	Del_2q22.1	0.851	1
Amp_15q11.2	Del_2q22.1	0.851	1
CTNNB1	Del_2q22.1	0.852	1
PIK3CA	Del_2q22.1	0.852	1
8p-Amp	Del_1p31.3	0.852	1
12p-Del	Del_1p31.3	0.852	1
Amp_8q22.1	Del_12p13.1	0.852	1
Amp_8q24.21	Del_12p13.1	0.852	1
Del_2q22.1	Del_9p23	0.852	1
Del_2q22.1	Del_19q13.2	0.852	1
IDH1	8p-Amp	0.853	1
IDH1	12p-Del	0.853	1
IDH1	Del_15q21.3	0.853	1
NKX3-1	8p-Amp	0.853	1
NKX3-1	12p-Del	0.853	1
NKX3-1	Del_15q21.3	0.853	1
NTM	FAM47C	0.853	1
NTM	Amp_8p11.23	0.853	1
NTM	Amp_14q21.1	0.853	1
OR4D5	FAM47C	0.853	1
OR4D5	Amp_8p11.23	0.853	1
OR4D5	Amp_14q21.1	0.853	1
CDKN1B	8p-Amp	0.853	1
CDKN1B	12p-Del	0.853	1
CNTNAP1	12p-Del	0.853	1
CNTNAP1	Del_15q21.3	0.853	1
FAM47C	MED15	0.853	1
FAM47C	TP53BP1	0.853	1
FAM47C	Xq-Del	0.853	1
FAM47C	Amp_11q13.2	0.853	1
FAM47C	Amp_Xq21.1	0.853	1
FAM47C	Del_11p11.2	0.853	1
FAM47C	Del_12q24.32	0.853	1
MED15	Amp_8p11.23	0.853	1
MED15	Amp_14q21.1	0.853	1
MLLT10	8p-Amp	0.853	1
MLLT10	12p-Del	0.853	1
MLLT10	Del_15q21.3	0.853	1
SMG7	12p-Del	0.853	1
SMG7	Del_15q21.3	0.853	1
TCEB3	8p-Amp	0.853	1
TCEB3	Del_15q21.3	0.853	1
TNRC18	12p-Del	0.853	1
TNRC18	Del_15q21.3	0.853	1
TP53BP1	Amp_14q21.1	0.853	1
ZNF709	8p-Amp	0.853	1
ZNF709	12p-Del	0.853	1
ZNF709	Del_15q21.3	0.853	1
8p-Amp	Amp_Xp21.1	0.853	1
8p-Amp	Amp_Xq25	0.853	1
12p-Del	Amp_Xp21.1	0.853	1
Xq-Del	Amp_14q21.1	0.853	1
Amp_8p11.23	Amp_Xq21.1	0.853	1
Amp_8p11.23	Del_12q24.32	0.853	1
Amp_14q21.1	Amp_Xq21.1	0.853	1
Amp_14q21.1	Del_11p11.2	0.853	1
Amp_14q21.1	Del_12q24.32	0.853	1
Amp_Xp21.1	Del_15q21.3	0.853	1
Amp_Xq25	Del_15q21.3	0.853	1
Del_5q11.2	Del_10q23.31	0.853	1
Del_11q23.2	Del_16q22.3	0.855	1
KIDINS220	PTEN	0.856	1
KIDINS220	Amp_7p14.3	0.856	1
KIDINS220	Amp_7q22.1	0.856	1
KIDINS220	Del_21q22.3	0.856	1
LMOD2	Amp_7p14.3	0.856	1
LMOD2	Amp_7q22.1	0.856	1
PTEN	SMAD4	0.856	1
PTEN	EDC4	0.856	1
PTEN	RNF31	0.856	1
PTEN	1q-Amp	0.856	1
PTEN	9q-Amp	0.856	1
PTEN	8q-Del	0.856	1
PTEN	Amp_12q23.1	0.856	1
PTEN	Amp_13q12.11	0.856	1
PTEN	Amp_16q11.2	0.856	1
SMAD4	Amp_7p14.3	0.856	1
SMAD4	Del_21q22.3	0.856	1
EDC4	Amp_7p14.3	0.856	1
EDC4	Amp_7q22.1	0.856	1
EDC4	Del_21q22.3	0.856	1
RNF31	Amp_7p14.3	0.856	1
RNF31	Amp_7q22.1	0.856	1
1q-Amp	Amp_7q22.1	0.856	1
1q-Amp	Del_21q22.3	0.856	1
9q-Amp	Del_21q22.3	0.856	1
8q-Del	Amp_7p14.3	0.856	1
8q-Del	Amp_7q22.1	0.856	1
8q-Del	Del_21q22.3	0.856	1
Amp_7p14.3	Amp_12q23.1	0.856	1
Amp_7q22.1	Amp_12q23.1	0.856	1
Amp_12q23.1	Del_21q22.3	0.856	1
Amp_13q12.11	Del_21q22.3	0.856	1
Amp_16q11.2	Del_21q22.3	0.856	1
Del_9p23	Del_21q22.3	0.856	1
Del_11q22.3	Del_21q22.3	0.856	1
PTEN	Del_17q21.31	0.857	1
SPOP	Amp_3q26.2	0.857	1
13q-Del	Del_10q23.31	0.857	1
Amp_17q23.2	Del_12p13.1	0.857	1
Amp_20q13.2	Del_12p13.1	0.857	1
Del_10q23.31	Del_21q22.2	0.857	1
Del_11q23.2	Del_21q22.2	0.857	1
3p-Amp	8q-Amp	0.858	1
3p-Amp	Del_2q22.3	0.858	1
3p-Amp	Del_5q13.2	0.858	1
8q-Amp	10q-Del	0.858	1
8q-Amp	22q-Del	0.858	1
10q-Del	Del_5q13.2	0.858	1
16q-Del	Amp_8p11.23	0.858	1
22q-Del	Del_2q22.3	0.858	1
22q-Del	Del_5q13.2	0.858	1
Amp_4q13.3	Del_2q22.3	0.858	1
Amp_4q13.3	Del_5q13.2	0.858	1
Amp_15q11.2	Del_2q22.3	0.858	1
Amp_15q11.2	Del_5q13.2	0.858	1
SPOP	Amp_9q33.3	0.86	1
Amp_8p11.23	Del_17p13.1	0.861	1
Amp_14q21.1	Del_17p13.1	0.861	1
Del_13q22.1	Del_17q21.31	0.862	1
18p-Del	Del_13q14.13	0.863	1
CTNNB1	8q-Amp	0.864	1
CTNNB1	Del_2q22.3	0.864	1
NKX3-1	Del_17p13.1	0.864	1
MLLT10	Del_17p13.1	0.864	1
PIK3CA	Del_5q13.2	0.864	1
SMG7	Del_17p13.1	0.864	1
8q-Amp	Del_1p22.1	0.864	1
8q-Amp	Del_9p23	0.864	1
Amp_Xp21.1	Del_17p13.1	0.864	1
Amp_Xq25	Del_17p13.1	0.864	1
Del_2q22.3	Del_9p23	0.864	1
Del_2q22.3	Del_11q22.3	0.864	1
Del_2q22.3	Del_19q13.2	0.864	1
Del_5q13.2	Del_19q13.2	0.864	1
3p-Amp	Del_1p31.3	0.865	1
10q-Del	Del_1p31.3	0.865	1
Amp_15q11.2	Del_1p31.3	0.865	1
Amp_Xq27.1	Del_10q23.31	0.865	1
Del_8p21.3	Del_19q13.2	0.865	1
ATM	SMAD4	0.866	1
ATM	EDC4	0.866	1
ATM	RNF31	0.866	1
ATM	9q-Amp	0.866	1
ATM	Amp_12q23.1	0.866	1
ATM	Amp_13q12.11	0.866	1
FOXA1	KIDINS220	0.866	1
FOXA1	LMOD2	0.866	1
FOXA1	SMAD4	0.866	1
FOXA1	EDC4	0.866	1
FOXA1	RNF31	0.866	1
FOXA1	1q-Amp	0.866	1
FOXA1	8q-Del	0.866	1
FOXA1	Amp_16q11.2	0.866	1
KIDINS220	7q-Amp	0.866	1
KIDINS220	Del_1q42.3	0.866	1
LMOD2	7q-Amp	0.866	1
LMOD2	Del_1q42.3	0.866	1
SMAD4	Del_1q42.3	0.866	1
EDC4	7q-Amp	0.866	1
EDC4	Del_1q42.3	0.866	1
RNF31	7q-Amp	0.866	1
RNF31	Del_1q42.3	0.866	1
7q-Amp	8q-Del	0.866	1
7q-Amp	Amp_12q23.1	0.866	1
9q-Amp	Del_1q42.3	0.866	1
Amp_12q23.1	Del_1q42.3	0.866	1
Amp_13q12.11	Del_1q42.3	0.866	1
Amp_16q11.2	Del_1q42.3	0.866	1
Del_12p13.1	Del_13q22.1	0.866	1
BRAF	LILRB5	0.867	1
BRAF	CDK12	0.867	1
BRAF	KDM6A	0.867	1
BRAF	3q-Amp	0.867	1
BRAF	6q-Del	0.867	1
BRAF	Amp_1q22	0.867	1
BRAF	Del_6p25.1	0.867	1
CTNNB1	IDH1	0.867	1
CTNNB1	NKX3-1	0.867	1
CTNNB1	CNTNAP1	0.867	1
CTNNB1	MLLT10	0.867	1
CTNNB1	SMG7	0.867	1
CTNNB1	TCEB3	0.867	1
CTNNB1	TNRC18	0.867	1
CTNNB1	ZNF709	0.867	1
CTNNB1	Amp_Xq25	0.867	1
IDH1	PIK3CA	0.867	1
IDH1	Del_1p22.1	0.867	1
IDH1	Del_9p23	0.867	1
IDH1	Del_11q22.3	0.867	1
IDH1	Del_19q13.2	0.867	1
LILRB5	CDK12	0.867	1
LILRB5	KDM6A	0.867	1
LILRB5	RPTN	0.867	1
LILRB5	ZMYM3	0.867	1
LILRB5	3q-Amp	0.867	1
LILRB5	6q-Del	0.867	1
LILRB5	Amp_1q22	0.867	1
LILRB5	Amp_Xp22.11	0.867	1
LILRB5	Del_6p25.1	0.867	1
NKX3-1	PIK3CA	0.867	1
NKX3-1	Del_1p22.1	0.867	1
NKX3-1	Del_11q22.3	0.867	1
NKX3-1	Del_19q13.2	0.867	1
PTEN	Del_16q24.1	0.867	1
CDKN1B	PIK3CA	0.867	1
CDKN1B	Del_1p22.1	0.867	1
CDKN1B	Del_9p23	0.867	1
CDKN1B	Del_19q13.2	0.867	1
CDK12	KDM6A	0.867	1
CDK12	ZMYM3	0.867	1
CDK12	3q-Amp	0.867	1
CDK12	6q-Del	0.867	1
CDK12	Del_6p25.1	0.867	1
CNTNAP1	PIK3CA	0.867	1
CNTNAP1	Del_1p22.1	0.867	1
CNTNAP1	Del_9p23	0.867	1
CNTNAP1	Del_11q22.3	0.867	1
CNTNAP1	Del_19q13.2	0.867	1
KDM6A	RPTN	0.867	1
KDM6A	ZMYM3	0.867	1
KDM6A	3q-Amp	0.867	1
KDM6A	6q-Del	0.867	1
KDM6A	Amp_1q22	0.867	1
KDM6A	Amp_Xp22.11	0.867	1
KDM6A	Del_6p25.1	0.867	1
MLLT10	PIK3CA	0.867	1
MLLT10	Del_1p22.1	0.867	1
MLLT10	Del_9p23	0.867	1
MLLT10	Del_19q13.2	0.867	1
PIK3CA	SMG7	0.867	1
PIK3CA	TCEB3	0.867	1
RPTN	Amp_1q22	0.867	1
SMG7	Del_1p22.1	0.867	1
SMG7	Del_9p23	0.867	1
SMG7	Del_11q22.3	0.867	1
SMG7	Del_19q13.2	0.867	1
TCEB3	Del_1p22.1	0.867	1
TCEB3	Del_9p23	0.867	1
TCEB3	Del_11q22.3	0.867	1
TCEB3	Del_19q13.2	0.867	1
TNRC18	Del_1p22.1	0.867	1
TNRC18	Del_9p23	0.867	1
TNRC18	Del_11q22.3	0.867	1
TNRC18	Del_19q13.2	0.867	1
ZMYM3	3q-Amp	0.867	1
ZMYM3	6q-Del	0.867	1
ZMYM3	Amp_Xp22.11	0.867	1
ZMYM3	Del_6p25.1	0.867	1
ZNF709	Del_1p22.1	0.867	1
ZNF709	Del_9p23	0.867	1
ZNF709	Del_11q22.3	0.867	1
ZNF709	Del_19q13.2	0.867	1
3q-Amp	Amp_1q22	0.867	1
6q-Del	Amp_1q22	0.867	1
6q-Del	Amp_Xp22.11	0.867	1
8p-Del	Del_2q22.1	0.867	1
Amp_1q22	Del_6p25.1	0.867	1
Amp_3q21.3	Del_18q21.31	0.867	1
Amp_Xp22.11	Del_6p25.1	0.867	1
Amp_Xp21.1	Del_1p22.1	0.867	1
Amp_Xp21.1	Del_9p23	0.867	1
Amp_Xp21.1	Del_11q22.3	0.867	1
Amp_Xq25	Del_1p22.1	0.867	1
Amp_Xq25	Del_9p23	0.867	1
Amp_Xq25	Del_11q22.3	0.867	1
Amp_Xq25	Del_19q13.2	0.867	1
FOXA1	7p-Amp	0.868	1
FOXA1	Amp_3q26.2	0.868	1
7q-Amp	Amp_3q26.2	0.868	1
Amp_8p11.23	Del_13q22.1	0.868	1
NKX3-1	Del_13q22.1	0.869	1
PTEN	Del_5q21.1	0.869	1
SMG7	Del_13q22.1	0.869	1
TNRC18	Del_13q22.1	0.869	1
ZNF709	Del_13q22.1	0.869	1
Amp_Xp21.1	Del_13q22.1	0.869	1
CDK12	Del_5q11.2	0.87	1
KDM6A	Del_5q11.2	0.87	1
FOXA1	Del_5q11.2	0.871	1
NTM	Amp_9q33.3	0.871	1
NTM	Amp_Xq27.1	0.871	1
OR4D5	Amp_9q33.3	0.871	1
OR4D5	Amp_Xq27.1	0.871	1
MED15	Amp_9q33.3	0.871	1
MED15	Amp_Xq27.1	0.871	1
TP53BP1	Amp_9q33.3	0.871	1
TP53BP1	Amp_Xq27.1	0.871	1
Xq-Del	Amp_Xq27.1	0.871	1
Amp_9q33.3	Amp_Xq21.1	0.871	1
Amp_11q13.2	Amp_Xq27.1	0.871	1
Amp_Xq21.1	Amp_Xq27.1	0.871	1
Amp_Xq27.1	Del_11p11.2	0.871	1
Amp_Xq27.1	Del_12q24.32	0.871	1
Del_1q42.3	Del_5q11.2	0.871	1
Del_6q14.3	Del_18q21.31	0.871	1
10p-Del	Del_18q23	0.872	1
Amp_17q23.2	Del_18q23	0.872	1
Amp_20q13.2	Del_18q23	0.872	1
CTNNB1	Del_12p13.1	0.876	1
LILRB5	Del_16q24.1	0.876	1
LMOD2	Del_16q24.1	0.876	1
NTM	Del_18q23	0.876	1
EDC4	Del_16q24.1	0.876	1
MED15	Del_18q23	0.876	1
RNF31	Del_16q24.1	0.876	1
RPTN	Del_16q24.1	0.876	1
1q-Amp	Del_16q24.1	0.876	1
3q-Amp	Del_16q24.1	0.876	1
6q-Del	Del_16q24.1	0.876	1
Amp_13q12.11	Del_16q24.1	0.876	1
Amp_Xp22.11	Del_16q24.1	0.876	1
Amp_Xq21.1	Del_18q23	0.876	1
Del_1p31.3	Del_9p23	0.876	1
Del_1p31.3	Del_11q22.3	0.876	1
Del_1p22.1	Del_12p13.1	0.876	1
Del_6p25.1	Del_16q24.1	0.876	1
Del_11p11.2	Del_18q23	0.876	1
Del_12p13.1	Del_19q13.2	0.876	1
KIDINS220	13q-Del	0.877	1
KIDINS220	Amp_3q21.3	0.877	1
KIDINS220	Del_4q28.2	0.877	1
KIDINS220	Del_21q22.2	0.877	1
LMOD2	13q-Del	0.877	1
LMOD2	Amp_3q21.3	0.877	1
LMOD2	Del_4q28.2	0.877	1
LMOD2	Del_21q22.2	0.877	1
SMAD4	Amp_3q21.3	0.877	1
SMAD4	Del_4q28.2	0.877	1
SMAD4	Del_21q22.2	0.877	1
EDC4	13q-Del	0.877	1
EDC4	Amp_3q21.3	0.877	1
EDC4	Del_4q28.2	0.877	1
EDC4	Del_21q22.2	0.877	1
RNF31	13q-Del	0.877	1
RNF31	Amp_3q21.3	0.877	1
RNF31	Del_4q28.2	0.877	1
RNF31	Del_21q22.2	0.877	1
1q-Amp	13q-Del	0.877	1
1q-Amp	Del_21q22.2	0.877	1
9q-Amp	13q-Del	0.877	1
9q-Amp	Amp_3q21.3	0.877	1
9q-Amp	Del_21q22.2	0.877	1
13q-Del	Amp_12q23.1	0.877	1
8q-Del	Amp_3q21.3	0.877	1
8q-Del	Del_4q28.2	0.877	1
8q-Del	Del_21q22.2	0.877	1
Amp_3q21.3	Amp_13q12.11	0.877	1
Amp_12q23.1	Del_4q28.2	0.877	1
Amp_13q12.11	Del_21q22.2	0.877	1
Amp_16q11.2	Del_4q28.2	0.877	1
RPTN	Del_3p13	0.878	1
ZMYM3	Del_17q21.31	0.878	1
3q-Amp	Del_3p13	0.878	1
6q-Del	Del_3p13	0.878	1
6q-Del	Del_17q21.31	0.878	1
Amp_1q22	Del_3p13	0.878	1
Amp_Xp22.11	Del_3p13	0.878	1
Del_6p25.1	Del_17q21.31	0.878	1
TP53	Amp_9q33.3	0.879	1
Del_11q23.2	Del_15q21.3	0.879	1
FOXA1	Del_13q22.1	0.88	1
SPOP	Amp_7p14.3	0.88	1
3p-Amp	17p-Del	0.88	1
3p-Amp	Del_11q23.2	0.88	1
10p-Del	Del_18q21.31	0.88	1
10q-Del	Del_11q23.2	0.88	1
17p-Del	22q-Del	0.88	1
17p-Del	Amp_15q11.2	0.88	1
22q-Del	Del_11q23.2	0.88	1
Amp_4q13.3	Del_11q23.2	0.88	1
Amp_15q11.2	Del_11q23.2	0.88	1
Amp_17q23.2	Del_18q21.31	0.88	1
Amp_20q13.2	Del_18q21.31	0.88	1
IDH1	FAM47C	0.881	1
IDH1	Amp_8p11.23	0.881	1
IDH1	Amp_14q21.1	0.881	1
NKX3-1	FAM47C	0.881	1
NKX3-1	Amp_14q21.1	0.881	1
CDKN1B	FAM47C	0.881	1
CDKN1B	Amp_8p11.23	0.881	1
CDKN1B	Amp_14q21.1	0.881	1
CNTNAP1	FAM47C	0.881	1
FAM47C	TCEB3	0.881	1
FAM47C	TNRC18	0.881	1
FAM47C	ZNF709	0.881	1
FAM47C	Amp_Xp21.1	0.881	1
FAM47C	Amp_Xq25	0.881	1
MLLT10	Amp_8p11.23	0.881	1
SMG7	Amp_8p11.23	0.881	1
SMG7	Amp_14q21.1	0.881	1
TCEB3	Amp_8p11.23	0.881	1
TCEB3	Amp_14q21.1	0.881	1
TNRC18	Amp_8p11.23	0.881	1
TNRC18	Amp_14q21.1	0.881	1
ZNF709	Amp_8p11.23	0.881	1
ZNF709	Amp_14q21.1	0.881	1
13q-Del	Del_16q22.3	0.881	1
8p-Del	Amp_3q21.3	0.881	1
8p-Del	Del_21q22.2	0.881	1
Amp_3q21.3	Del_16q22.3	0.881	1
Amp_8p11.23	Amp_Xp21.1	0.881	1
Amp_8p11.23	Amp_Xq25	0.881	1
Amp_14q21.1	Amp_Xq25	0.881	1
Del_4q28.2	Del_16q22.3	0.881	1
Del_16q22.3	Del_21q22.2	0.881	1
ATM	Del_17q21.31	0.882	1
Del_1q42.3	Del_3p13	0.882	1
Amp_8q24.21	Del_13q22.1	0.883	1
ATM	PTEN	0.884	1
FOXA1	PTEN	0.884	1
FOXA1	Amp_7p14.3	0.884	1
FOXA1	Amp_7q22.1	0.884	1
BRAF	Amp_8q22.1	0.886	1
BRAF	Amp_8q24.21	0.886	1
BRAF	Del_5q21.1	0.886	1
LILRB5	Del_5q21.1	0.886	1
CDK12	Amp_8q22.1	0.886	1
KDM6A	Amp_8q22.1	0.886	1
KDM6A	Amp_8q24.21	0.886	1
RPTN	Amp_8q22.1	0.886	1
RPTN	Amp_8q24.21	0.886	1
RPTN	Del_5q21.1	0.886	1
ZMYM3	Amp_8q22.1	0.886	1
ZMYM3	Amp_8q24.21	0.886	1
3q-Amp	Amp_8q22.1	0.886	1
6q-Del	Del_5q21.1	0.886	1
Amp_8q24.21	Del_6p25.1	0.886	1
Del_5q21.1	Del_6p25.1	0.886	1
3p-Amp	18p-Del	0.887	1
10q-Del	18p-Del	0.887	1
18p-Del	Amp_4q13.3	0.887	1
18p-Del	Amp_15q11.2	0.887	1
Del_4q28.2	Del_8p23.2	0.887	1
Del_6q14.3	Del_15q21.3	0.887	1
BRAF	NTM	0.888	1
BRAF	Xq-Del	0.888	1
BRAF	Amp_11q13.2	0.888	1
BRAF	Del_11p11.2	0.888	1
BRAF	Del_12q24.32	0.888	1
CTNNB1	Del_16q24.1	0.888	1
KIDINS220	8p-Amp	0.888	1
KIDINS220	12p-Del	0.888	1
KIDINS220	Del_15q21.3	0.888	1
LILRB5	NTM	0.888	1
LILRB5	OR4D5	0.888	1
LILRB5	MED15	0.888	1
LILRB5	TP53BP1	0.888	1
LILRB5	Amp_11q13.2	0.888	1
LILRB5	Amp_Xq21.1	0.888	1
LILRB5	Del_11p11.2	0.888	1
LILRB5	Del_12q24.32	0.888	1
LMOD2	8p-Amp	0.888	1
LMOD2	12p-Del	0.888	1
LMOD2	Del_15q21.3	0.888	1
NTM	CDK12	0.888	1
NTM	KDM6A	0.888	1
NTM	RPTN	0.888	1
NTM	3q-Amp	0.888	1
NTM	6q-Del	0.888	1
NTM	Amp_Xp22.11	0.888	1
NTM	Del_6p25.1	0.888	1
OR4D5	CDK12	0.888	1
OR4D5	KDM6A	0.888	1
OR4D5	RPTN	0.888	1
OR4D5	3q-Amp	0.888	1
OR4D5	6q-Del	0.888	1
OR4D5	Amp_Xp22.11	0.888	1
OR4D5	Del_6p25.1	0.888	1
SMAD4	12p-Del	0.888	1
CDK12	MED15	0.888	1
CDK12	TP53BP1	0.888	1
CDK12	Amp_Xq21.1	0.888	1
CDK12	Del_12q24.32	0.888	1
EDC4	12p-Del	0.888	1
EDC4	Del_15q21.3	0.888	1
KDM6A	MED15	0.888	1
KDM6A	TP53BP1	0.888	1
KDM6A	Amp_Xq21.1	0.888	1
KDM6A	Del_11p11.2	0.888	1
KDM6A	Del_12q24.32	0.888	1
MED15	Amp_1q22	0.888	1
MED15	Amp_Xp22.11	0.888	1
RNF31	8p-Amp	0.888	1
RNF31	12p-Del	0.888	1
RNF31	Del_15q21.3	0.888	1
RPTN	Xq-Del	0.888	1
RPTN	Amp_11q13.2	0.888	1
RPTN	Amp_Xq21.1	0.888	1
RPTN	Del_11p11.2	0.888	1
RPTN	Del_12q24.32	0.888	1
TP53BP1	3q-Amp	0.888	1
TP53BP1	6q-Del	0.888	1
TP53BP1	Amp_Xp22.11	0.888	1
ZMYM3	Xq-Del	0.888	1
ZMYM3	Amp_11q13.2	0.888	1
ZMYM3	Amp_Xq21.1	0.888	1
ZMYM3	Del_11p11.2	0.888	1
ZMYM3	Del_12q24.32	0.888	1
1q-Amp	12p-Del	0.888	1
1q-Amp	Del_15q21.3	0.888	1
3q-Amp	Xq-Del	0.888	1
3q-Amp	Amp_Xq21.1	0.888	1
8p-Amp	8q-Del	0.888	1
8p-Amp	Amp_12q23.1	0.888	1
8p-Amp	Amp_16q11.2	0.888	1
9q-Amp	12p-Del	0.888	1
9q-Amp	Del_15q21.3	0.888	1
12p-Del	8q-Del	0.888	1
12p-Del	Amp_12q23.1	0.888	1
12p-Del	Amp_13q12.11	0.888	1
12p-Del	Amp_16q11.2	0.888	1
6q-Del	Xq-Del	0.888	1
6q-Del	Amp_11q13.2	0.888	1
6q-Del	Amp_Xq21.1	0.888	1
6q-Del	Del_11p11.2	0.888	1
6q-Del	Del_12q24.32	0.888	1
Xq-Del	Amp_1q22	0.888	1
Xq-Del	Amp_Xp22.11	0.888	1
Xq-Del	Del_6p25.1	0.888	1
Amp_1q22	Amp_Xq21.1	0.888	1
Amp_1q22	Del_11p11.2	0.888	1
Amp_1q22	Del_12q24.32	0.888	1
Amp_11q13.2	Del_6p25.1	0.888	1
Amp_13q12.11	Del_15q21.3	0.888	1
Amp_16q11.2	Del_15q21.3	0.888	1
Amp_Xp22.11	Amp_Xq21.1	0.888	1
Amp_Xp22.11	Del_11p11.2	0.888	1
Amp_Xq21.1	Del_6p25.1	0.888	1
Del_6p25.1	Del_11p11.2	0.888	1
Del_6p25.1	Del_12q24.32	0.888	1
Del_9p23	Del_16q24.1	0.888	1
NTM	Del_18q21.31	0.889	1
MED15	Del_18q21.31	0.889	1
Xq-Del	Del_18q21.31	0.889	1
Amp_3q26.2	Del_10q23.31	0.889	1
Amp_Xq21.1	Del_18q21.31	0.889	1
Del_4q28.2	Del_8p21.3	0.889	1
Del_11p11.2	Del_18q21.31	0.889	1
Amp_8q24.21	Del_2q22.3	0.89	1
Amp_14q21.1	Del_5q13.2	0.89	1
Del_3p13	Del_16q24.1	0.89	1
Del_5q11.2	Del_16q22.3	0.89	1
Del_11q23.2	Del_18q21.31	0.89	1
10p-Del	Del_5q11.2	0.891	1
Amp_17q23.2	Del_5q11.2	0.891	1
Amp_20q13.2	Del_5q11.2	0.891	1
ATM	Del_5q21.1	0.892	1
8p-Amp	18p-Del	0.892	1
10q-Del	Del_8p21.3	0.892	1
22q-Del	Del_8p21.3	0.892	1
8p-Del	Del_5q13.2	0.892	1
Amp_15q11.2	Del_8p21.3	0.892	1
Del_1q42.3	Del_5q21.1	0.892	1
16q-Del	Del_10q23.31	0.893	1
LILRB5	SPOP	0.894	1
SPOP	KDM6A	0.894	1
SPOP	RPTN	0.894	1
SPOP	6q-Del	0.894	1
SPOP	Amp_1q22	0.894	1
SPOP	Del_6p25.1	0.894	1
CDKN1B	Del_8p21.3	0.894	1
TCEB3	Del_8p21.3	0.894	1
3p-Amp	7p-Amp	0.894	1
7p-Amp	10q-Del	0.894	1
7p-Amp	22q-Del	0.894	1
7p-Amp	Amp_15q11.2	0.894	1
10q-Del	Amp_3q26.2	0.894	1
16q-Del	Amp_3q26.2	0.894	1
22q-Del	Amp_3q26.2	0.894	1
Amp_3q26.2	Amp_4q13.3	0.894	1
Amp_3q26.2	Amp_15q11.2	0.894	1
Amp_Xp21.1	Del_8p21.3	0.894	1
IDH1	Amp_9q33.3	0.895	1
IDH1	Amp_Xq27.1	0.895	1
NKX3-1	Amp_9q33.3	0.895	1
NKX3-1	Amp_Xq27.1	0.895	1
CDKN1B	Amp_9q33.3	0.895	1
CDKN1B	Amp_Xq27.1	0.895	1
CNTNAP1	Amp_9q33.3	0.895	1
CNTNAP1	Amp_Xq27.1	0.895	1
MLLT10	Amp_9q33.3	0.895	1
MLLT10	Amp_Xq27.1	0.895	1
SMG7	Amp_9q33.3	0.895	1
SMG7	Amp_Xq27.1	0.895	1
TCEB3	Amp_9q33.3	0.895	1
TCEB3	Amp_Xq27.1	0.895	1
TNRC18	Amp_9q33.3	0.895	1
TNRC18	Amp_Xq27.1	0.895	1
ZNF709	Amp_9q33.3	0.895	1
10p-Del	Del_3p13	0.895	1
10p-Del	Del_17q21.31	0.895	1
Amp_9q33.3	Amp_Xq25	0.895	1
Amp_17q23.2	Del_3p13	0.895	1
Amp_17q23.2	Del_17q21.31	0.895	1
Amp_20q13.2	Del_3p13	0.895	1
Amp_20q13.2	Del_17q21.31	0.895	1
Amp_Xp21.1	Amp_Xq27.1	0.895	1
Amp_Xq25	Amp_Xq27.1	0.895	1
13q-Del	Del_5q11.2	0.896	1
Del_1p31.3	Del_17q21.31	0.896	1
17p-Del	Del_5q13.2	0.897	1
Amp_8q24.21	Del_5q21.1	0.897	1
Amp_11q13.2	Del_8p23.2	0.897	1
Amp_Xq21.1	Del_8p23.2	0.897	1
Del_8p23.2	Del_11p11.2	0.897	1
Amp_8q24.21	Del_10q23.31	0.898	1
ATM	FOXA1	0.899	1
CTNNB1	KIDINS220	0.899	1
CTNNB1	EDC4	0.899	1
CTNNB1	RNF31	0.899	1
CTNNB1	1q-Amp	0.899	1
CTNNB1	9q-Amp	0.899	1
CTNNB1	8q-Del	0.899	1
CTNNB1	Amp_12q23.1	0.899	1
CTNNB1	Amp_13q12.11	0.899	1
CTNNB1	Amp_16q11.2	0.899	1
CTNNB1	Del_11q23.2	0.899	1
FOXA1	7q-Amp	0.899	1
FOXA1	Del_1q42.3	0.899	1
KIDINS220	PIK3CA	0.899	1
KIDINS220	Del_1p22.1	0.899	1
KIDINS220	Del_9p23	0.899	1
KIDINS220	Del_11q22.3	0.899	1
KIDINS220	Del_19q13.2	0.899	1
LMOD2	PIK3CA	0.899	1
LMOD2	Del_1p22.1	0.899	1
LMOD2	Del_9p23	0.899	1
LMOD2	Del_19q13.2	0.899	1
SMAD4	Del_1p22.1	0.899	1
SMAD4	Del_6q14.3	0.899	1
SMAD4	Del_9p23	0.899	1
SMAD4	Del_19q13.2	0.899	1
EDC4	Del_6q14.3	0.899	1
EDC4	Del_9p23	0.899	1
EDC4	Del_11q22.3	0.899	1
PIK3CA	RNF31	0.899	1
PIK3CA	1q-Amp	0.899	1
PIK3CA	9q-Amp	0.899	1
PIK3CA	17p-Del	0.899	1
PIK3CA	8q-Del	0.899	1
PIK3CA	Amp_12q23.1	0.899	1
PIK3CA	Amp_13q12.11	0.899	1
RNF31	Del_1p22.1	0.899	1
RNF31	Del_9p23	0.899	1
RNF31	Del_11q22.3	0.899	1
RNF31	Del_19q13.2	0.899	1
1q-Amp	Del_1p22.1	0.899	1
1q-Amp	Del_19q13.2	0.899	1
9q-Amp	Del_1p22.1	0.899	1
9q-Amp	Del_9p23	0.899	1
9q-Amp	Del_19q13.2	0.899	1
10p-Del	Amp_8q22.1	0.899	1
10p-Del	Amp_8q24.21	0.899	1
10p-Del	Del_5q21.1	0.899	1
17p-Del	Del_1p22.1	0.899	1
17p-Del	Del_11q22.3	0.899	1
8q-Del	Del_1p22.1	0.899	1
8q-Del	Del_11q22.3	0.899	1
8q-Del	Del_19q13.2	0.899	1
Amp_12q23.1	Del_1p22.1	0.899	1
Amp_12q23.1	Del_9p23	0.899	1
Amp_12q23.1	Del_19q13.2	0.899	1
Amp_13q12.11	Del_1p22.1	0.899	1
Amp_13q12.11	Del_9p23	0.899	1
Amp_13q12.11	Del_19q13.2	0.899	1
Amp_16q11.2	Del_1p22.1	0.899	1
Amp_16q11.2	Del_9p23	0.899	1
Amp_17q23.2	Del_5q21.1	0.899	1
Amp_20q13.2	Del_5q21.1	0.899	1
Del_1p22.1	Del_11q23.2	0.899	1
PTEN	Amp_3q21.3	0.9	1
MLLT10	Del_12p13.1	0.9	1
Amp_Xp21.1	Del_12p13.1	0.9	1
Amp_Xq25	Del_12p13.1	0.9	1
Del_5q11.2	Del_21q22.3	0.9	1
ATM	Del_16q24.1	0.901	1
FOXA1	Del_16q24.1	0.901	1
MED15	Del_13q14.13	0.901	1
18p-Del	Del_2q22.1	0.901	1
Amp_11q13.2	Del_13q14.13	0.901	1
Del_1q42.3	Del_16q24.1	0.901	1
PTEN	3p-Amp	0.902	1
PTEN	22q-Del	0.902	1
PTEN	Amp_15q11.2	0.902	1
PTEN	Del_12p13.1	0.902	1
SPOP	7q-Amp	0.902	1
TP53	Amp_7q22.1	0.902	1
3p-Amp	Amp_7p14.3	0.902	1
3p-Amp	Amp_7q22.1	0.902	1
10q-Del	Amp_7p14.3	0.902	1
10q-Del	Amp_7q22.1	0.902	1
18q-Del	Amp_7q22.1	0.902	1
22q-Del	Amp_7p14.3	0.902	1
22q-Del	Amp_7q22.1	0.902	1
Amp_3q21.3	Del_17p13.1	0.902	1
Amp_4q13.3	Amp_7p14.3	0.902	1
Amp_7p14.3	Amp_15q11.2	0.902	1
Amp_7q22.1	Amp_15q11.2	0.902	1
KIDINS220	Del_10q23.31	0.903	1
SMAD4	Del_10q23.31	0.903	1
SPOP	10p-Del	0.903	1
SPOP	Amp_17q23.2	0.903	1
SPOP	Amp_20q13.2	0.903	1
EDC4	Del_10q23.31	0.903	1
8q-Del	Del_10q23.31	0.903	1
Amp_16q11.2	Del_10q23.31	0.903	1
12p-Del	Amp_3q26.2	0.904	1
Del_1p31.3	Del_12p13.1	0.904	1
Del_3p13	Del_13q14.13	0.904	1
13q-Del	Del_17q21.31	0.905	1
BRAF	Del_6q14.3	0.906	1
CTNNB1	Del_18q23	0.906	1
NTM	MED15	0.906	1
NTM	TP53BP1	0.906	1
NTM	Xq-Del	0.906	1
NTM	Amp_11q13.2	0.906	1
NTM	Amp_Xq21.1	0.906	1
NTM	Del_11p11.2	0.906	1
OR4D5	MED15	0.906	1
OR4D5	TP53BP1	0.906	1
OR4D5	Xq-Del	0.906	1
OR4D5	Amp_11q13.2	0.906	1
OR4D5	Del_11p11.2	0.906	1
OR4D5	Del_12q24.32	0.906	1
CDK12	Del_6q14.3	0.906	1
MED15	Xq-Del	0.906	1
MED15	Amp_11q13.2	0.906	1
MED15	Amp_Xq21.1	0.906	1
MED15	Del_11p11.2	0.906	1
MED15	Del_12q24.32	0.906	1
TP53BP1	Xq-Del	0.906	1
TP53BP1	Amp_Xq21.1	0.906	1
TP53BP1	Del_11p11.2	0.906	1
TP53BP1	Del_12q24.32	0.906	1
ZMYM3	Del_8p21.3	0.906	1
3q-Amp	Del_8p21.3	0.906	1
Xq-Del	Amp_Xq21.1	0.906	1
Xq-Del	Del_12q24.32	0.906	1
Amp_8q24.21	Del_18q23	0.906	1
Amp_11q13.2	Amp_Xq21.1	0.906	1
Amp_11q13.2	Del_12q24.32	0.906	1
Amp_Xp22.11	Del_6q14.3	0.906	1
Amp_Xp22.11	Del_8p21.3	0.906	1
Amp_Xq21.1	Del_11p11.2	0.906	1
Amp_Xq21.1	Del_12q24.32	0.906	1
Del_11p11.2	Del_12q24.32	0.906	1
Del_11q22.3	Del_18q23	0.906	1
Amp_11q13.2	Del_5q11.2	0.907	1
Del_5q11.2	Del_12q24.32	0.907	1
BRAF	TP53	0.908	1
LILRB5	TP53	0.908	1
LILRB5	18q-Del	0.908	1
NTM	Del_21q22.3	0.908	1
TP53	Amp_1q22	0.908	1
TP53	Amp_Xp22.11	0.908	1
TP53	Del_6p25.1	0.908	1
CDK12	18q-Del	0.908	1
3q-Amp	18q-Del	0.908	1
18q-Del	Amp_1q22	0.908	1
18q-Del	Amp_Xp22.11	0.908	1
18q-Del	Del_6p25.1	0.908	1
Amp_Xq21.1	Del_21q22.3	0.908	1
Del_12q24.32	Del_21q22.3	0.908	1
ATM	3p-Amp	0.909	1
ATM	22q-Del	0.909	1
ATM	Amp_4q13.3	0.909	1
ATM	Amp_15q11.2	0.909	1
FOXA1	10q-Del	0.909	1
FOXA1	22q-Del	0.909	1
FOXA1	Amp_4q13.3	0.909	1
KIDINS220	FAM47C	0.909	1
KIDINS220	Amp_8p11.23	0.909	1
KIDINS220	Amp_14q21.1	0.909	1
LMOD2	FAM47C	0.909	1
LMOD2	Amp_8p11.23	0.909	1
LMOD2	Amp_14q21.1	0.909	1
SMAD4	FAM47C	0.909	1
SMAD4	Amp_8p11.23	0.909	1
SMAD4	Amp_14q21.1	0.909	1
EDC4	FAM47C	0.909	1
EDC4	Amp_8p11.23	0.909	1
EDC4	Amp_14q21.1	0.909	1
FAM47C	RNF31	0.909	1
FAM47C	1q-Amp	0.909	1
FAM47C	9q-Amp	0.909	1
FAM47C	8q-Del	0.909	1
FAM47C	Amp_12q23.1	0.909	1
FAM47C	Amp_13q12.11	0.909	1
FAM47C	Amp_16q11.2	0.909	1
RNF31	Amp_8p11.23	0.909	1
RNF31	Amp_14q21.1	0.909	1
1q-Amp	Amp_14q21.1	0.909	1
3p-Amp	7q-Amp	0.909	1
3p-Amp	Del_1q42.3	0.909	1
7q-Amp	10q-Del	0.909	1
7q-Amp	22q-Del	0.909	1
7q-Amp	Amp_15q11.2	0.909	1
9q-Amp	Amp_14q21.1	0.909	1
10q-Del	Del_1q42.3	0.909	1
8q-Del	Amp_8p11.23	0.909	1
8q-Del	Amp_14q21.1	0.909	1
Amp_4q13.3	Del_1q42.3	0.909	1
Amp_8p11.23	Amp_12q23.1	0.909	1
Amp_8p11.23	Amp_13q12.11	0.909	1
Amp_8p11.23	Amp_16q11.2	0.909	1
Amp_14q21.1	Del_12p13.1	0.909	1
Amp_15q11.2	Del_1q42.3	0.909	1
BRAF	IDH1	0.91	1
BRAF	NKX3-1	0.91	1
BRAF	CNTNAP1	0.91	1
BRAF	TCEB3	0.91	1
BRAF	Amp_Xp21.1	0.91	1
IDH1	LILRB5	0.91	1
IDH1	CDK12	0.91	1
IDH1	KDM6A	0.91	1
IDH1	RPTN	0.91	1
IDH1	3q-Amp	0.91	1
IDH1	6q-Del	0.91	1
IDH1	Amp_1q22	0.91	1
IDH1	Amp_Xp22.11	0.91	1
IDH1	Del_6p25.1	0.91	1
LILRB5	NKX3-1	0.91	1
LILRB5	CDKN1B	0.91	1
LILRB5	CNTNAP1	0.91	1
LILRB5	MLLT10	0.91	1
LILRB5	SMG7	0.91	1
LILRB5	TCEB3	0.91	1
LILRB5	TNRC18	0.91	1
LILRB5	Amp_Xp21.1	0.91	1
LILRB5	Amp_Xq25	0.91	1
NKX3-1	CDK12	0.91	1
NKX3-1	KDM6A	0.91	1
NKX3-1	RPTN	0.91	1
NKX3-1	ZMYM3	0.91	1
NKX3-1	3q-Amp	0.91	1
NKX3-1	6q-Del	0.91	1
NKX3-1	Amp_1q22	0.91	1
NKX3-1	Amp_Xp22.11	0.91	1
NKX3-1	Del_6p25.1	0.91	1
CDKN1B	CDK12	0.91	1
CDKN1B	KDM6A	0.91	1
CDKN1B	3q-Amp	0.91	1
CDKN1B	Amp_1q22	0.91	1
CDKN1B	Amp_Xp22.11	0.91	1
CDK12	MLLT10	0.91	1
CDK12	SMG7	0.91	1
CDK12	TCEB3	0.91	1
CDK12	TNRC18	0.91	1
CDK12	ZNF709	0.91	1
CDK12	Amp_Xp21.1	0.91	1
CDK12	Amp_Xq25	0.91	1
CNTNAP1	KDM6A	0.91	1
CNTNAP1	RPTN	0.91	1
CNTNAP1	ZMYM3	0.91	1
CNTNAP1	3q-Amp	0.91	1
CNTNAP1	6q-Del	0.91	1
CNTNAP1	Amp_Xp22.11	0.91	1
CNTNAP1	Del_6p25.1	0.91	1
KDM6A	MLLT10	0.91	1
KDM6A	SMG7	0.91	1
KDM6A	TCEB3	0.91	1
KDM6A	TNRC18	0.91	1
KDM6A	ZNF709	0.91	1
KDM6A	Amp_Xp21.1	0.91	1
KDM6A	Amp_Xq25	0.91	1
MLLT10	RPTN	0.91	1
MLLT10	ZMYM3	0.91	1
MLLT10	3q-Amp	0.91	1
MLLT10	6q-Del	0.91	1
MLLT10	Amp_1q22	0.91	1
MLLT10	Amp_Xp22.11	0.91	1
MLLT10	Del_6p25.1	0.91	1
PIK3CA	18p-Del	0.91	1
RPTN	TCEB3	0.91	1
RPTN	TNRC18	0.91	1
RPTN	Amp_Xp21.1	0.91	1
RPTN	Amp_Xq25	0.91	1
SMG7	3q-Amp	0.91	1
SMG7	6q-Del	0.91	1
SMG7	Amp_1q22	0.91	1
SMG7	Del_6p25.1	0.91	1
TCEB3	ZMYM3	0.91	1
TCEB3	3q-Amp	0.91	1
TCEB3	6q-Del	0.91	1
TCEB3	Amp_1q22	0.91	1
TCEB3	Amp_Xp22.11	0.91	1
TCEB3	Del_6p25.1	0.91	1
TNRC18	ZMYM3	0.91	1
TNRC18	3q-Amp	0.91	1
TNRC18	Amp_1q22	0.91	1
TNRC18	Del_6p25.1	0.91	1
ZMYM3	Amp_Xp21.1	0.91	1
ZMYM3	Amp_Xq25	0.91	1
ZNF709	3q-Amp	0.91	1
ZNF709	6q-Del	0.91	1
ZNF709	Amp_1q22	0.91	1
ZNF709	Amp_Xp22.11	0.91	1
ZNF709	Del_6p25.1	0.91	1
3q-Amp	Amp_Xq25	0.91	1
6q-Del	Amp_Xp21.1	0.91	1
6q-Del	Amp_Xq25	0.91	1
Amp_1q22	Amp_Xp21.1	0.91	1
Amp_1q22	Amp_Xq25	0.91	1
Amp_Xp22.11	Amp_Xq25	0.91	1
Amp_Xp21.1	Del_6p25.1	0.91	1
Amp_Xq25	Del_6p25.1	0.91	1
TP53	10p-Del	0.911	1
TP53	Amp_17q23.2	0.911	1
TP53	Amp_20q13.2	0.911	1
ZMYM3	Del_10q23.31	0.911	1
3q-Amp	Del_10q23.31	0.911	1
7p-Amp	8p-Del	0.911	1
10p-Del	18q-Del	0.911	1
18q-Del	Amp_17q23.2	0.911	1
18q-Del	Amp_20q13.2	0.911	1
8p-Del	Amp_3q26.2	0.911	1
Del_6p25.1	Del_10q23.31	0.911	1
PTEN	16q-Del	0.912	1
TP53	Del_2q22.1	0.912	1
7p-Amp	Del_18q23	0.912	1
8q-Amp	18p-Del	0.912	1
8p-Del	Del_15q21.3	0.912	1
Amp_3q26.2	Del_18q23	0.912	1
NTM	Del_3p13	0.913	1
NTM	Del_17q21.31	0.913	1
OR4D5	Del_3p13	0.913	1
TP53	Del_5q11.2	0.913	1
MED15	Del_3p13	0.913	1
13q-Del	Amp_8q24.21	0.913	1
13q-Del	Del_5q21.1	0.913	1
Amp_Xq21.1	Del_3p13	0.913	1
Del_3p13	Del_11p11.2	0.913	1
Del_11p11.2	Del_17q21.31	0.913	1
ATM	Del_4q28.2	0.914	1
FOXA1	13q-Del	0.914	1
LMOD2	Del_16q22.3	0.914	1
RNF31	Del_16q22.3	0.914	1
1q-Amp	8p-Del	0.914	1
1q-Amp	Del_16q22.3	0.914	1
9q-Amp	8p-Del	0.914	1
13q-Del	Del_1q42.3	0.914	1
8p-Del	Amp_12q23.1	0.914	1
8p-Del	Amp_13q12.11	0.914	1
8p-Del	Amp_16q11.2	0.914	1
Amp_9q33.3	Del_2q22.3	0.914	1
Amp_13q12.11	Del_16q22.3	0.914	1
Del_1q42.3	Del_4q28.2	0.914	1
Del_1q42.3	Del_21q22.2	0.914	1
10p-Del	16q-Del	0.915	1
16q-Del	Amp_17q23.2	0.915	1
16q-Del	Amp_20q13.2	0.915	1
Del_3p13	Del_18q21.31	0.915	1
LILRB5	16q-Del	0.916	1
PTEN	12p-Del	0.916	1
PTEN	Del_15q21.3	0.916	1
RPTN	16q-Del	0.916	1
3p-Amp	13q-Del	0.916	1
3p-Amp	Del_21q22.2	0.916	1
10q-Del	Amp_3q21.3	0.916	1
10q-Del	Del_4q28.2	0.916	1
10q-Del	Del_21q22.2	0.916	1
13q-Del	22q-Del	0.916	1
13q-Del	Amp_15q11.2	0.916	1
16q-Del	6q-Del	0.916	1
16q-Del	Amp_Xp22.11	0.916	1
16q-Del	Del_6p25.1	0.916	1
22q-Del	Amp_3q21.3	0.916	1
22q-Del	Del_4q28.2	0.916	1
Amp_3q21.3	Amp_15q11.2	0.916	1
Amp_3q26.2	Del_2q22.1	0.916	1
Amp_4q13.3	Del_4q28.2	0.916	1
Amp_4q13.3	Del_21q22.2	0.916	1
Amp_7p14.3	Del_15q21.3	0.916	1
Amp_15q11.2	Del_21q22.2	0.916	1
Del_2q22.3	Del_17p13.1	0.918	1
Del_5q11.2	Del_15q21.3	0.918	1
IDH1	Del_18q23	0.919	1
NKX3-1	Del_18q23	0.919	1
NTM	Del_5q21.1	0.919	1
OR4D5	Amp_8q22.1	0.919	1
OR4D5	Amp_8q24.21	0.919	1
MED15	Del_5q21.1	0.919	1
MLLT10	Del_18q23	0.919	1
SMG7	Del_18q23	0.919	1
TP53BP1	Amp_8q24.21	0.919	1
17p-Del	Amp_8p11.23	0.919	1
Amp_8p11.23	Del_11q23.2	0.919	1
Amp_8q22.1	Del_11p11.2	0.919	1
Amp_8q22.1	Del_12q24.32	0.919	1
Amp_8q24.21	Del_11p11.2	0.919	1
Del_5q21.1	Del_12q24.32	0.919	1
ATM	18q-Del	0.92	1
KIDINS220	Amp_9q33.3	0.92	1
KIDINS220	Amp_Xq27.1	0.92	1
LMOD2	Amp_9q33.3	0.92	1
LMOD2	Amp_Xq27.1	0.92	1
SMAD4	Amp_9q33.3	0.92	1
SMAD4	Amp_Xq27.1	0.92	1
EDC4	Amp_9q33.3	0.92	1
EDC4	Amp_Xq27.1	0.92	1
PIK3CA	Del_18q21.31	0.92	1
RNF31	Amp_9q33.3	0.92	1
RNF31	Amp_Xq27.1	0.92	1
1q-Amp	Amp_9q33.3	0.92	1
1q-Amp	Amp_Xq27.1	0.92	1
7q-Amp	18q-Del	0.92	1
9q-Amp	Amp_Xq27.1	0.92	1
8q-Del	Amp_9q33.3	0.92	1
8q-Del	Amp_Xq27.1	0.92	1
Amp_9q33.3	Amp_12q23.1	0.92	1
Amp_12q23.1	Amp_Xq27.1	0.92	1
Amp_13q12.11	Amp_Xq27.1	0.92	1
Amp_16q11.2	Amp_Xq27.1	0.92	1
Del_11q22.3	Del_18q21.31	0.92	1
SPOP	Amp_3q21.3	0.921	1
PIK3CA	7p-Amp	0.921	1
7p-Amp	Del_9p23	0.921	1
7p-Amp	Del_19q13.2	0.921	1
Amp_3q26.2	Del_19q13.2	0.921	1
Del_6q14.3	Del_9p23	0.921	1
10p-Del	Del_2q22.1	0.922	1
Amp_17q23.2	Del_2q22.1	0.922	1
Amp_20q13.2	Del_2q22.1	0.922	1
PTEN	Del_8p23.2	0.923	1
ATM	Del_12p13.1	0.924	1
IDH1	NTM	0.924	1
IDH1	OR4D5	0.924	1
IDH1	TP53BP1	0.924	1
IDH1	Xq-Del	0.924	1
IDH1	Amp_11q13.2	0.924	1
IDH1	Amp_Xq21.1	0.924	1
IDH1	Del_11p11.2	0.924	1
IDH1	Del_12q24.32	0.924	1
KIDINS220	Del_17p13.1	0.924	1
LILRB5	Del_16q22.3	0.924	1
LMOD2	Del_17p13.1	0.924	1
NKX3-1	NTM	0.924	1
NKX3-1	OR4D5	0.924	1
NKX3-1	MED15	0.924	1
NKX3-1	TP53BP1	0.924	1
NKX3-1	Xq-Del	0.924	1
NKX3-1	Amp_11q13.2	0.924	1
NKX3-1	Del_11p11.2	0.924	1
NKX3-1	Del_12q24.32	0.924	1
NTM	CDKN1B	0.924	1
NTM	CNTNAP1	0.924	1
NTM	MLLT10	0.924	1
NTM	SMG7	0.924	1
NTM	TCEB3	0.924	1
NTM	TNRC18	0.924	1
NTM	ZNF709	0.924	1
NTM	Amp_Xp21.1	0.924	1
NTM	Amp_Xq25	0.924	1
OR4D5	CDKN1B	0.924	1
OR4D5	CNTNAP1	0.924	1
OR4D5	SMG7	0.924	1
OR4D5	TCEB3	0.924	1
OR4D5	TNRC18	0.924	1
OR4D5	ZNF709	0.924	1
OR4D5	Amp_Xp21.1	0.924	1
TP53	Del_17q21.31	0.924	1
CDKN1B	Xq-Del	0.924	1
CDKN1B	Amp_11q13.2	0.924	1
CDKN1B	Amp_Xq21.1	0.924	1
CDKN1B	Del_11p11.2	0.924	1
CDKN1B	Del_12q24.32	0.924	1
CNTNAP1	MED15	0.924	1
CNTNAP1	TP53BP1	0.924	1
CNTNAP1	Xq-Del	0.924	1
CNTNAP1	Amp_Xq21.1	0.924	1
CNTNAP1	Del_11p11.2	0.924	1
CNTNAP1	Del_12q24.32	0.924	1
MED15	MLLT10	0.924	1
MED15	TCEB3	0.924	1
MED15	TNRC18	0.924	1
MED15	Amp_Xp21.1	0.924	1
MED15	Amp_Xq25	0.924	1
MLLT10	TP53BP1	0.924	1
MLLT10	Xq-Del	0.924	1
MLLT10	Amp_11q13.2	0.924	1
MLLT10	Del_11p11.2	0.924	1
MLLT10	Del_12q24.32	0.924	1
RNF31	Del_17p13.1	0.924	1
RPTN	Del_16q22.3	0.924	1
SMG7	Xq-Del	0.924	1
SMG7	Amp_11q13.2	0.924	1
SMG7	Amp_Xq21.1	0.924	1
SMG7	Del_11p11.2	0.924	1
SMG7	Del_12q24.32	0.924	1
TCEB3	Xq-Del	0.924	1
TCEB3	Amp_11q13.2	0.924	1
TCEB3	Del_11p11.2	0.924	1
TCEB3	Del_12q24.32	0.924	1
TNRC18	TP53BP1	0.924	1
TNRC18	Xq-Del	0.924	1
TNRC18	Amp_11q13.2	0.924	1
TNRC18	Amp_Xq21.1	0.924	1
TNRC18	Del_11p11.2	0.924	1
TNRC18	Del_12q24.32	0.924	1
TP53BP1	Amp_Xp21.1	0.924	1
TP53BP1	Amp_Xq25	0.924	1
ZNF709	Xq-Del	0.924	1
ZNF709	Amp_11q13.2	0.924	1
ZNF709	Amp_Xq21.1	0.924	1
ZNF709	Del_11p11.2	0.924	1
ZNF709	Del_12q24.32	0.924	1
3p-Amp	8p-Amp	0.924	1
3p-Amp	12p-Del	0.924	1
3p-Amp	Del_15q21.3	0.924	1
3q-Amp	Del_16q22.3	0.924	1
8p-Amp	10q-Del	0.924	1
8p-Amp	22q-Del	0.924	1
9q-Amp	Del_17p13.1	0.924	1
10q-Del	12p-Del	0.924	1
10q-Del	Del_15q21.3	0.924	1
12p-Del	22q-Del	0.924	1
12p-Del	Amp_4q13.3	0.924	1
12p-Del	Amp_15q11.2	0.924	1
8p-Del	Del_6p25.1	0.924	1
Xq-Del	Amp_Xp21.1	0.924	1
Xq-Del	Amp_Xq25	0.924	1
Amp_1q22	Del_16q22.3	0.924	1
Amp_4q13.3	Del_15q21.3	0.924	1
Amp_11q13.2	Amp_Xp21.1	0.924	1
Amp_11q13.2	Amp_Xq25	0.924	1
Amp_12q23.1	Del_17p13.1	0.924	1
Amp_Xp22.11	Del_16q22.3	0.924	1
Amp_Xp21.1	Amp_Xq21.1	0.924	1
Amp_Xp21.1	Del_11p11.2	0.924	1
Amp_Xq25	Del_11p11.2	0.924	1
Del_6p25.1	Del_16q22.3	0.924	1
NTM	SPOP	0.925	1
OR4D5	SPOP	0.925	1
SPOP	MED15	0.925	1
SPOP	TP53BP1	0.925	1
SPOP	Amp_11q13.2	0.925	1
SPOP	Amp_Xq21.1	0.925	1
8q-Amp	18q-Del	0.925	1
12p-Del	Del_3p13	0.925	1
8p-Del	Amp_8q24.21	0.925	1
PIK3CA	Del_10q23.31	0.926	1
8q-Amp	10p-Del	0.926	1
8q-Amp	Amp_20q13.2	0.926	1
10p-Del	Del_2q22.3	0.926	1
10p-Del	Del_5q13.2	0.926	1
Amp_8p11.23	Del_16q24.1	0.926	1
Amp_17q23.2	Del_2q22.3	0.926	1
Amp_17q23.2	Del_5q13.2	0.926	1
Amp_20q13.2	Del_2q22.3	0.926	1
Amp_20q13.2	Del_5q13.2	0.926	1
ATM	12p-Del	0.927	1
FOXA1	Del_15q21.3	0.927	1
KIDINS220	Del_13q22.1	0.927	1
LMOD2	Del_13q22.1	0.927	1
NTM	Del_16q24.1	0.927	1
OR4D5	Del_16q24.1	0.927	1
1q-Amp	Del_13q22.1	0.927	1
8q-Del	Del_13q22.1	0.927	1
Xq-Del	Del_16q24.1	0.927	1
Amp_3q26.2	Del_5q13.2	0.927	1
Amp_8q24.21	Del_18q21.31	0.927	1
Amp_11q13.2	Del_16q24.1	0.927	1
Del_2q22.3	Del_8p23.2	0.927	1
Del_5q21.1	Del_18q21.31	0.927	1
IDH1	Del_18q21.31	0.928	1
NKX3-1	Del_18q21.31	0.928	1
MLLT10	Del_18q21.31	0.928	1
SMG7	Del_18q21.31	0.928	1
7p-Amp	Del_18q21.31	0.928	1
17p-Del	Del_17q21.31	0.928	1
18p-Del	Amp_8p11.23	0.928	1
Amp_3q26.2	Del_18q21.31	0.928	1
Amp_Xp21.1	Del_18q21.31	0.928	1
LILRB5	Del_2q22.1	0.929	1
CDK12	Del_2q22.1	0.929	1
KDM6A	Del_2q22.1	0.929	1
RPTN	Del_2q22.1	0.929	1
6q-Del	Del_2q22.1	0.929	1
Del_15q21.3	Del_17p13.1	0.929	1
10p-Del	Del_1p31.3	0.93	1
Amp_17q23.2	Del_1p31.3	0.93	1
Amp_20q13.2	Del_1p31.3	0.93	1
Del_3p13	Del_12p13.1	0.93	1
CTNNB1	3p-Amp	0.931	1
CTNNB1	10q-Del	0.931	1
CTNNB1	22q-Del	0.931	1
CTNNB1	Amp_15q11.2	0.931	1
PTEN	PIK3CA	0.931	1
PTEN	Del_11q22.3	0.931	1
PIK3CA	3p-Amp	0.931	1
PIK3CA	10q-Del	0.931	1
PIK3CA	22q-Del	0.931	1
PIK3CA	Amp_7q22.1	0.931	1
PIK3CA	Amp_15q11.2	0.931	1
3p-Amp	Del_1p22.1	0.931	1
3p-Amp	Del_9p23	0.931	1
3p-Amp	Del_11q22.3	0.931	1
3p-Amp	Del_19q13.2	0.931	1
10q-Del	Del_1p22.1	0.931	1
10q-Del	Del_11q22.3	0.931	1
10q-Del	Del_19q13.2	0.931	1
18q-Del	Del_21q22.3	0.931	1
Amp_3q21.3	Del_16q24.1	0.931	1
Amp_4q13.3	Del_1p22.1	0.931	1
Amp_4q13.3	Del_9p23	0.931	1
Amp_4q13.3	Del_11q22.3	0.931	1
Amp_4q13.3	Del_19q13.2	0.931	1
Amp_7p14.3	Del_18q23	0.931	1
Amp_7p14.3	Del_19q13.2	0.931	1
Amp_7q22.1	Del_11q22.3	0.931	1
Amp_7q22.1	Del_19q13.2	0.931	1
Amp_15q11.2	Del_1p22.1	0.931	1
Amp_15q11.2	Del_9p23	0.931	1
Amp_15q11.2	Del_11q22.3	0.931	1
Amp_15q11.2	Del_19q13.2	0.931	1
Del_16q24.1	Del_21q22.2	0.931	1
BRAF	KIDINS220	0.932	1
BRAF	LMOD2	0.932	1
BRAF	SMAD4	0.932	1
BRAF	EDC4	0.932	1
BRAF	1q-Amp	0.932	1
BRAF	9q-Amp	0.932	1
BRAF	8q-Del	0.932	1
BRAF	Amp_12q23.1	0.932	1
BRAF	Amp_13q12.11	0.932	1
BRAF	Amp_16q11.2	0.932	1
KIDINS220	LILRB5	0.932	1
KIDINS220	CDK12	0.932	1
KIDINS220	KDM6A	0.932	1
KIDINS220	RPTN	0.932	1
KIDINS220	ZMYM3	0.932	1
KIDINS220	3q-Amp	0.932	1
KIDINS220	6q-Del	0.932	1
KIDINS220	Amp_1q22	0.932	1
KIDINS220	Amp_Xp22.11	0.932	1
KIDINS220	Del_6p25.1	0.932	1
LILRB5	LMOD2	0.932	1
LILRB5	SMAD4	0.932	1
LILRB5	EDC4	0.932	1
LILRB5	RNF31	0.932	1
LILRB5	1q-Amp	0.932	1
LILRB5	8q-Del	0.932	1
LILRB5	Amp_12q23.1	0.932	1
LILRB5	Amp_13q12.11	0.932	1
LILRB5	Amp_16q11.2	0.932	1
LMOD2	CDK12	0.932	1
LMOD2	RPTN	0.932	1
LMOD2	ZMYM3	0.932	1
LMOD2	3q-Amp	0.932	1
LMOD2	6q-Del	0.932	1
LMOD2	Amp_1q22	0.932	1
LMOD2	Amp_Xp22.11	0.932	1
LMOD2	Del_6p25.1	0.932	1
SMAD4	KDM6A	0.932	1
SMAD4	RPTN	0.932	1
SMAD4	ZMYM3	0.932	1
SMAD4	3q-Amp	0.932	1
SMAD4	6q-Del	0.932	1
SMAD4	Amp_Xp22.11	0.932	1
SMAD4	Del_6p25.1	0.932	1
CDK12	EDC4	0.932	1
CDK12	RNF31	0.932	1
CDK12	1q-Amp	0.932	1
CDK12	9q-Amp	0.932	1
CDK12	8q-Del	0.932	1
CDK12	Amp_16q11.2	0.932	1
EDC4	KDM6A	0.932	1
EDC4	RPTN	0.932	1
EDC4	ZMYM3	0.932	1
EDC4	3q-Amp	0.932	1
EDC4	Amp_1q22	0.932	1
EDC4	Amp_Xp22.11	0.932	1
EDC4	Del_6p25.1	0.932	1
KDM6A	RNF31	0.932	1
KDM6A	1q-Amp	0.932	1
KDM6A	9q-Amp	0.932	1
KDM6A	8q-Del	0.932	1
KDM6A	Amp_12q23.1	0.932	1
KDM6A	Amp_13q12.11	0.932	1
KDM6A	Amp_16q11.2	0.932	1
RNF31	3q-Amp	0.932	1
RNF31	6q-Del	0.932	1
RNF31	Amp_1q22	0.932	1
RNF31	Amp_Xp22.11	0.932	1
RNF31	Del_6p25.1	0.932	1
RPTN	1q-Amp	0.932	1
RPTN	9q-Amp	0.932	1
RPTN	8q-Del	0.932	1
RPTN	Amp_12q23.1	0.932	1
RPTN	Amp_13q12.11	0.932	1
ZMYM3	9q-Amp	0.932	1
ZMYM3	8q-Del	0.932	1
ZMYM3	Amp_12q23.1	0.932	1
ZMYM3	Amp_13q12.11	0.932	1
ZMYM3	Amp_16q11.2	0.932	1
1q-Amp	3q-Amp	0.932	1
1q-Amp	Amp_Xp22.11	0.932	1
1q-Amp	Del_6p25.1	0.932	1
3q-Amp	9q-Amp	0.932	1
3q-Amp	8q-Del	0.932	1
3q-Amp	Amp_12q23.1	0.932	1
3q-Amp	Amp_13q12.11	0.932	1
9q-Amp	6q-Del	0.932	1
9q-Amp	Amp_1q22	0.932	1
9q-Amp	Amp_Xp22.11	0.932	1
9q-Amp	Del_6p25.1	0.932	1
12p-Del	Amp_8q22.1	0.932	1
12p-Del	Amp_8q24.21	0.932	1
6q-Del	8q-Del	0.932	1
6q-Del	Amp_12q23.1	0.932	1
6q-Del	Amp_16q11.2	0.932	1
8q-Del	Amp_1q22	0.932	1
8q-Del	Amp_Xp22.11	0.932	1
8q-Del	Del_6p25.1	0.932	1
Amp_1q22	Amp_16q11.2	0.932	1
Amp_12q23.1	Amp_Xp22.11	0.932	1
Amp_12q23.1	Del_6p25.1	0.932	1
Amp_13q12.11	Del_6p25.1	0.932	1
Amp_14q21.1	Del_18q23	0.932	1
Amp_16q11.2	Del_6p25.1	0.932	1
PTEN	8p-Del	0.934	1
PTEN	Del_16q22.3	0.934	1
18q-Del	Amp_8q24.21	0.934	1
8p-Del	Amp_7p14.3	0.934	1
Del_13q22.1	Del_15q21.3	0.934	1
ATM	Del_6q14.3	0.935	1
BRAF	8q-Amp	0.935	1
LILRB5	8q-Amp	0.935	1
NTM	TP53	0.935	1
NTM	18q-Del	0.935	1
TP53	Del_11p11.2	0.935	1
TP53	Del_12q24.32	0.935	1
CDK12	8q-Amp	0.935	1
CDK12	Del_5q13.2	0.935	1
KDM6A	8q-Amp	0.935	1
KDM6A	Del_5q13.2	0.935	1
MED15	18q-Del	0.935	1
RPTN	8q-Amp	0.935	1
3q-Amp	Del_2q22.3	0.935	1
16q-Del	Del_5q13.2	0.935	1
18q-Del	Xq-Del	0.935	1
18q-Del	Amp_Xq21.1	0.935	1
6q-Del	Del_2q22.3	0.935	1
Amp_1q22	Del_2q22.3	0.935	1
Amp_1q22	Del_5q13.2	0.935	1
Del_5q13.2	Del_6p25.1	0.935	1
TP53	13q-Del	0.936	1
TP53	Del_21q22.2	0.936	1
ZMYM3	Del_17p13.1	0.936	1
7p-Amp	Amp_14q21.1	0.936	1
7p-Amp	Del_1p31.3	0.936	1
18q-Del	Amp_3q21.3	0.936	1
6q-Del	Del_17p13.1	0.936	1
Amp_3q26.2	Amp_8p11.23	0.936	1
Amp_8q22.1	Del_11q23.2	0.936	1
Amp_Xp22.11	Del_17p13.1	0.936	1
Del_5q21.1	Del_11q23.2	0.936	1
Del_6p25.1	Del_17p13.1	0.936	1
PTEN	Del_21q22.3	0.937	1
TP53	Del_1p31.3	0.937	1
10q-Del	Del_8p23.2	0.937	1
17p-Del	Amp_9q33.3	0.937	1
22q-Del	Del_8p23.2	0.937	1
Amp_9q33.3	Del_12p13.1	0.937	1
Amp_15q11.2	Del_8p23.2	0.937	1
Del_15q21.3	Del_21q22.3	0.937	1
8p-Amp	Amp_3q21.3	0.938	1
10p-Del	17p-Del	0.938	1
12p-Del	Amp_3q21.3	0.938	1
17p-Del	Amp_17q23.2	0.938	1
17p-Del	Amp_20q13.2	0.938	1
Amp_3q26.2	Del_16q24.1	0.938	1
Amp_17q23.2	Del_11q23.2	0.938	1
Amp_20q13.2	Del_11q23.2	0.938	1
Del_4q28.2	Del_15q21.3	0.938	1
Del_5q11.2	Del_9p23	0.938	1
Del_5q11.2	Del_19q13.2	0.938	1
CTNNB1	Del_16q22.3	0.939	1
IDH1	NKX3-1	0.939	1
IDH1	CDKN1B	0.939	1
IDH1	CNTNAP1	0.939	1
IDH1	MLLT10	0.939	1
IDH1	SMG7	0.939	1
IDH1	TCEB3	0.939	1
IDH1	TNRC18	0.939	1
IDH1	ZNF709	0.939	1
IDH1	Amp_Xp21.1	0.939	1
IDH1	Amp_Xq25	0.939	1
NKX3-1	CDKN1B	0.939	1
NKX3-1	CNTNAP1	0.939	1
NKX3-1	MLLT10	0.939	1
NKX3-1	SMG7	0.939	1
NKX3-1	TNRC18	0.939	1
NKX3-1	ZNF709	0.939	1
NKX3-1	Amp_Xp21.1	0.939	1
NKX3-1	Amp_Xq25	0.939	1
PTEN	8q-Amp	0.939	1
CDKN1B	CNTNAP1	0.939	1
CDKN1B	MLLT10	0.939	1
CDKN1B	TCEB3	0.939	1
CDKN1B	TNRC18	0.939	1
CDKN1B	Amp_Xp21.1	0.939	1
CDKN1B	Amp_Xq25	0.939	1
CNTNAP1	MLLT10	0.939	1
CNTNAP1	SMG7	0.939	1
CNTNAP1	TCEB3	0.939	1
CNTNAP1	TNRC18	0.939	1
CNTNAP1	ZNF709	0.939	1
CNTNAP1	Amp_Xp21.1	0.939	1
CNTNAP1	Amp_Xq25	0.939	1
FAM47C	3p-Amp	0.939	1
FAM47C	10q-Del	0.939	1
FAM47C	22q-Del	0.939	1
FAM47C	Amp_4q13.3	0.939	1
FAM47C	Amp_15q11.2	0.939	1
MLLT10	SMG7	0.939	1
MLLT10	TCEB3	0.939	1
MLLT10	TNRC18	0.939	1
MLLT10	ZNF709	0.939	1
MLLT10	Amp_Xp21.1	0.939	1
PIK3CA	Del_16q22.3	0.939	1
SMG7	TCEB3	0.939	1
SMG7	Amp_Xp21.1	0.939	1
SMG7	Amp_Xq25	0.939	1
TCEB3	TNRC18	0.939	1
TCEB3	ZNF709	0.939	1
TCEB3	Amp_Xp21.1	0.939	1
TCEB3	Amp_Xq25	0.939	1
TNRC18	ZNF709	0.939	1
TNRC18	Amp_Xp21.1	0.939	1
TNRC18	Amp_Xq25	0.939	1
ZNF709	Amp_Xp21.1	0.939	1
ZNF709	Amp_Xq25	0.939	1
3p-Amp	Amp_8p11.23	0.939	1
3p-Amp	Amp_14q21.1	0.939	1
3p-Amp	Del_13q14.13	0.939	1
10q-Del	Amp_8p11.23	0.939	1
10q-Del	Amp_14q21.1	0.939	1
10q-Del	Del_13q14.13	0.939	1
22q-Del	Amp_8p11.23	0.939	1
22q-Del	Amp_14q21.1	0.939	1
8p-Del	Del_9p23	0.939	1
Amp_4q13.3	Amp_8p11.23	0.939	1
Amp_4q13.3	Amp_14q21.1	0.939	1
Amp_7q22.1	Del_5q13.2	0.939	1
Amp_8p11.23	Amp_15q11.2	0.939	1
Amp_14q21.1	Amp_15q11.2	0.939	1
Amp_15q11.2	Del_13q14.13	0.939	1
Del_2q22.3	Del_18q21.31	0.939	1
Del_9p23	Del_16q22.3	0.939	1
Del_11q23.2	Del_12p13.1	0.939	1
Del_16q22.3	Del_19q13.2	0.939	1
ATM	Del_9p23	0.94	1
ATM	Del_11q22.3	0.94	1
ATM	Del_19q13.2	0.94	1
CTNNB1	FOXA1	0.94	1
FOXA1	PIK3CA	0.94	1
FOXA1	Del_11q22.3	0.94	1
LILRB5	Del_13q22.1	0.94	1
KDM6A	Del_13q22.1	0.94	1
PIK3CA	7q-Amp	0.94	1
7q-Amp	Del_9p23	0.94	1
7q-Amp	Del_19q13.2	0.94	1
Amp_1q22	Del_13q22.1	0.94	1
Del_1p22.1	Del_1q42.3	0.94	1
Del_1q42.3	Del_19q13.2	0.94	1
OR4D5	16q-Del	0.941	1
MED15	16q-Del	0.941	1
MLLT10	Del_5q11.2	0.941	1
TCEB3	Del_5q11.2	0.941	1
16q-Del	Xq-Del	0.941	1
16q-Del	Amp_11q13.2	0.941	1
Amp_9q33.3	Del_21q22.3	0.941	1
Amp_Xq25	Del_5q11.2	0.941	1
3q-Amp	Del_1p31.3	0.942	1
10p-Del	18p-Del	0.942	1
18p-Del	Amp_17q23.2	0.942	1
18p-Del	Amp_20q13.2	0.942	1
18q-Del	Del_6q14.3	0.942	1
Amp_14q21.1	Del_18q21.31	0.942	1
Amp_Xp22.11	Del_1p31.3	0.942	1
Del_1q42.3	Del_8p21.3	0.942	1
KIDINS220	NTM	0.943	1
KIDINS220	OR4D5	0.943	1
KIDINS220	MED15	0.943	1
KIDINS220	TP53BP1	0.943	1
KIDINS220	Xq-Del	0.943	1
KIDINS220	Amp_11q13.2	0.943	1
KIDINS220	Amp_Xq21.1	0.943	1
KIDINS220	Del_11p11.2	0.943	1
KIDINS220	Del_12q24.32	0.943	1
LMOD2	NTM	0.943	1
LMOD2	OR4D5	0.943	1
LMOD2	MED15	0.943	1
LMOD2	TP53BP1	0.943	1
LMOD2	Xq-Del	0.943	1
LMOD2	Amp_11q13.2	0.943	1
LMOD2	Amp_Xq21.1	0.943	1
LMOD2	Del_11p11.2	0.943	1
LMOD2	Del_12q24.32	0.943	1
NTM	SMAD4	0.943	1
NTM	EDC4	0.943	1
NTM	RNF31	0.943	1
NTM	9q-Amp	0.943	1
NTM	8q-Del	0.943	1
NTM	Amp_12q23.1	0.943	1
NTM	Amp_13q12.11	0.943	1
NTM	Amp_16q11.2	0.943	1
OR4D5	SMAD4	0.943	1
OR4D5	EDC4	0.943	1
OR4D5	RNF31	0.943	1
OR4D5	9q-Amp	0.943	1
OR4D5	8q-Del	0.943	1
OR4D5	Amp_12q23.1	0.943	1
OR4D5	Amp_13q12.11	0.943	1
OR4D5	Amp_16q11.2	0.943	1
SMAD4	MED15	0.943	1
SMAD4	TP53BP1	0.943	1
SMAD4	Amp_11q13.2	0.943	1
SMAD4	Amp_Xq21.1	0.943	1
SMAD4	Del_12q24.32	0.943	1
EDC4	MED15	0.943	1
EDC4	TP53BP1	0.943	1
EDC4	Xq-Del	0.943	1
EDC4	Amp_11q13.2	0.943	1
EDC4	Amp_Xq21.1	0.943	1
EDC4	Del_11p11.2	0.943	1
EDC4	Del_12q24.32	0.943	1
MED15	1q-Amp	0.943	1
MED15	9q-Amp	0.943	1
MED15	Amp_12q23.1	0.943	1
MED15	Amp_13q12.11	0.943	1
MED15	Amp_16q11.2	0.943	1
RNF31	Xq-Del	0.943	1
RNF31	Amp_11q13.2	0.943	1
RNF31	Amp_Xq21.1	0.943	1
RNF31	Del_11p11.2	0.943	1
RNF31	Del_12q24.32	0.943	1
TP53BP1	9q-Amp	0.943	1
TP53BP1	8q-Del	0.943	1
TP53BP1	Amp_12q23.1	0.943	1
TP53BP1	Amp_13q12.11	0.943	1
TP53BP1	Amp_16q11.2	0.943	1
1q-Amp	Xq-Del	0.943	1
1q-Amp	Amp_Xq21.1	0.943	1
1q-Amp	Del_11p11.2	0.943	1
1q-Amp	Del_12q24.32	0.943	1
9q-Amp	Amp_11q13.2	0.943	1
9q-Amp	Amp_Xq21.1	0.943	1
9q-Amp	Del_12q24.32	0.943	1
16q-Del	Amp_3q21.3	0.943	1
16q-Del	Del_4q28.2	0.943	1
22q-Del	Del_21q22.3	0.943	1
8q-Del	Xq-Del	0.943	1
8q-Del	Amp_11q13.2	0.943	1
8q-Del	Del_11p11.2	0.943	1
8q-Del	Del_12q24.32	0.943	1
Xq-Del	Amp_12q23.1	0.943	1
Xq-Del	Amp_16q11.2	0.943	1
Amp_4q13.3	Del_21q22.3	0.943	1
Amp_11q13.2	Amp_16q11.2	0.943	1
Amp_12q23.1	Amp_Xq21.1	0.943	1
Amp_12q23.1	Del_11p11.2	0.943	1
Amp_12q23.1	Del_12q24.32	0.943	1
Amp_13q12.11	Amp_Xq21.1	0.943	1
Amp_13q12.11	Del_12q24.32	0.943	1
Amp_16q11.2	Amp_Xq21.1	0.943	1
Amp_16q11.2	Del_11p11.2	0.943	1
CTNNB1	Del_17q21.31	0.944	1
FOXA1	Del_2q22.1	0.944	1
NKX3-1	Del_3p13	0.944	1
PTEN	Del_18q21.31	0.944	1
CDKN1B	Del_3p13	0.944	1
CDKN1B	Del_17q21.31	0.944	1
PIK3CA	Del_3p13	0.944	1
TCEB3	Del_17q21.31	0.944	1
TNRC18	Del_3p13	0.944	1
ZNF709	Del_3p13	0.944	1
18p-Del	Del_11q23.2	0.944	1
Amp_7p14.3	Del_18q21.31	0.944	1
Amp_Xp21.1	Del_3p13	0.944	1
Del_1p22.1	Del_3p13	0.944	1
Del_1q42.3	Del_2q22.1	0.944	1
Del_3p13	Del_9p23	0.944	1
Del_9p23	Del_17q21.31	0.944	1
Del_12p13.1	Del_21q22.2	0.944	1
KIDINS220	Del_12p13.1	0.945	1
PTEN	Amp_8p11.23	0.945	1
PTEN	Amp_14q21.1	0.945	1
EDC4	Del_12p13.1	0.945	1
9q-Amp	Del_12p13.1	0.945	1
16q-Del	Del_5q21.1	0.945	1
8q-Del	Del_12p13.1	0.945	1
Amp_7p14.3	Amp_14q21.1	0.945	1
Amp_7q22.1	Amp_14q21.1	0.945	1
Amp_13q12.11	Del_12p13.1	0.945	1
Amp_16q11.2	Del_12p13.1	0.945	1
TP53BP1	Del_6q14.3	0.946	1
3p-Amp	Amp_9q33.3	0.946	1
7p-Amp	10p-Del	0.946	1
7p-Amp	Amp_17q23.2	0.946	1
7p-Amp	Amp_20q13.2	0.946	1
10p-Del	Amp_3q26.2	0.946	1
10q-Del	Amp_9q33.3	0.946	1
10q-Del	Amp_Xq27.1	0.946	1
22q-Del	Amp_Xq27.1	0.946	1
Amp_3q26.2	Amp_20q13.2	0.946	1
Amp_4q13.3	Amp_9q33.3	0.946	1
Amp_4q13.3	Amp_Xq27.1	0.946	1
Amp_9q33.3	Amp_15q11.2	0.946	1
Amp_15q11.2	Amp_Xq27.1	0.946	1
18p-Del	Del_6q14.3	0.947	1
Amp_7p14.3	Del_1p31.3	0.947	1
Amp_7q22.1	Del_1p31.3	0.947	1
Del_2q22.3	Del_8p21.3	0.947	1
ATM	Del_8p23.2	0.948	1
ATM	Del_18q23	0.948	1
NKX3-1	Amp_8q22.1	0.948	1
NKX3-1	Amp_8q24.21	0.948	1
NTM	Del_10q23.31	0.948	1
CNTNAP1	Amp_8q22.1	0.948	1
CNTNAP1	Del_5q21.1	0.948	1
MLLT10	Amp_8q22.1	0.948	1
MLLT10	Amp_8q24.21	0.948	1
MLLT10	Del_5q21.1	0.948	1
SMG7	Amp_8q22.1	0.948	1
SMG7	Amp_8q24.21	0.948	1
SMG7	Del_5q21.1	0.948	1
TNRC18	Amp_8q22.1	0.948	1
TNRC18	Amp_8q24.21	0.948	1
TNRC18	Del_5q21.1	0.948	1
ZNF709	Amp_8q22.1	0.948	1
ZNF709	Amp_8q24.21	0.948	1
7q-Amp	Del_8p23.2	0.948	1
8p-Amp	Del_15q21.3	0.948	1
Amp_8q22.1	Amp_Xp21.1	0.948	1
Del_1q42.3	Del_8p23.2	0.948	1
Del_1q42.3	Del_18q23	0.948	1
CTNNB1	13q-Del	0.949	1
CTNNB1	Del_4q28.2	0.949	1
PIK3CA	Amp_8q24.21	0.949	1
13q-Del	Del_9p23	0.949	1
13q-Del	Del_19q13.2	0.949	1
18p-Del	Amp_8q22.1	0.949	1
Amp_3q21.3	Del_9p23	0.949	1
Amp_3q21.3	Del_11q22.3	0.949	1
Amp_3q21.3	Del_19q13.2	0.949	1
Amp_8q22.1	Del_11q22.3	0.949	1
Del_1p22.1	Del_4q28.2	0.949	1
Del_1p22.1	Del_21q22.2	0.949	1
Del_2q22.1	Del_5q11.2	0.949	1
Del_9p23	Del_21q22.2	0.949	1
NKX3-1	Del_8p23.2	0.95	1
PTEN	10p-Del	0.95	1
PTEN	Amp_17q23.2	0.95	1
PTEN	Amp_20q13.2	0.95	1
MED15	Del_2q22.1	0.95	1
TCEB3	Del_8p23.2	0.95	1
TNRC18	Del_8p23.2	0.95	1
TP53BP1	Del_2q22.1	0.95	1
10p-Del	Amp_7p14.3	0.95	1
10p-Del	Amp_7q22.1	0.95	1
8p-Del	Del_11q23.2	0.95	1
Amp_7p14.3	Amp_17q23.2	0.95	1
Amp_7p14.3	Amp_20q13.2	0.95	1
Amp_7q22.1	Amp_20q13.2	0.95	1
Amp_Xp21.1	Del_8p23.2	0.95	1
Del_2q22.1	Del_12q24.32	0.95	1
ATM	Del_2q22.3	0.951	1
TP53	8p-Amp	0.951	1
TP53	Del_15q21.3	0.951	1
8p-Amp	18q-Del	0.951	1
Amp_3q26.2	Amp_Xq27.1	0.951	1
Del_1q42.3	Del_2q22.3	0.951	1
Del_1q42.3	Del_5q13.2	0.951	1
Del_2q22.1	Del_16q22.3	0.951	1
ATM	Del_13q14.13	0.952	1
FOXA1	Amp_14q21.1	0.952	1
FOXA1	Del_13q14.13	0.952	1
SPOP	CNTNAP1	0.952	1
SPOP	MLLT10	0.952	1
SPOP	TNRC18	0.952	1
SPOP	Amp_Xq25	0.952	1
ZNF709	Del_13q14.13	0.952	1
7q-Amp	Amp_14q21.1	0.952	1
22q-Del	Del_16q24.1	0.952	1
Amp_4q13.3	Del_16q24.1	0.952	1
Amp_14q21.1	Del_1q42.3	0.952	1
Amp_15q11.2	Del_16q24.1	0.952	1
Del_2q22.1	Del_16q24.1	0.952	1
ATM	Amp_17q23.2	0.953	1
ATM	Amp_20q13.2	0.953	1
BRAF	17p-Del	0.953	1
FOXA1	10p-Del	0.953	1
FOXA1	Amp_17q23.2	0.953	1
FOXA1	Amp_20q13.2	0.953	1
CDK12	Del_11q23.2	0.953	1
3q-Amp	17p-Del	0.953	1
3q-Amp	Del_11q23.2	0.953	1
7p-Amp	17p-Del	0.953	1
7q-Amp	10p-Del	0.953	1
7q-Amp	Amp_17q23.2	0.953	1
7q-Amp	Amp_20q13.2	0.953	1
7q-Amp	Del_16q22.3	0.953	1
17p-Del	Amp_3q26.2	0.953	1
17p-Del	Del_6p25.1	0.953	1
Amp_1q22	Del_11q23.2	0.953	1
Amp_3q26.2	Del_11q23.2	0.953	1
Amp_17q23.2	Del_1q42.3	0.953	1
Amp_20q13.2	Del_1q42.3	0.953	1
Del_8p23.2	Del_9p23	0.953	1
BRAF	3p-Amp	0.954	1
BRAF	10q-Del	0.954	1
BRAF	22q-Del	0.954	1
BRAF	Amp_4q13.3	0.954	1
BRAF	Amp_15q11.2	0.954	1
IDH1	KIDINS220	0.954	1
IDH1	LMOD2	0.954	1
IDH1	SMAD4	0.954	1
IDH1	EDC4	0.954	1
IDH1	RNF31	0.954	1
IDH1	1q-Amp	0.954	1
IDH1	9q-Amp	0.954	1
IDH1	8q-Del	0.954	1
IDH1	Amp_12q23.1	0.954	1
IDH1	Amp_13q12.11	0.954	1
IDH1	Amp_16q11.2	0.954	1
KIDINS220	NKX3-1	0.954	1
KIDINS220	CDKN1B	0.954	1
KIDINS220	CNTNAP1	0.954	1
KIDINS220	MLLT10	0.954	1
KIDINS220	SMG7	0.954	1
KIDINS220	TCEB3	0.954	1
KIDINS220	TNRC18	0.954	1
KIDINS220	ZNF709	0.954	1
KIDINS220	Amp_Xp21.1	0.954	1
KIDINS220	Amp_Xq25	0.954	1
LILRB5	3p-Amp	0.954	1
LILRB5	10q-Del	0.954	1
LILRB5	22q-Del	0.954	1
LILRB5	Amp_4q13.3	0.954	1
LMOD2	NKX3-1	0.954	1
LMOD2	CDKN1B	0.954	1
LMOD2	CNTNAP1	0.954	1
LMOD2	MLLT10	0.954	1
LMOD2	SMG7	0.954	1
LMOD2	TCEB3	0.954	1
LMOD2	TNRC18	0.954	1
LMOD2	ZNF709	0.954	1
LMOD2	Amp_Xp21.1	0.954	1
LMOD2	Amp_Xq25	0.954	1
NKX3-1	SMAD4	0.954	1
NKX3-1	EDC4	0.954	1
NKX3-1	RNF31	0.954	1
NKX3-1	1q-Amp	0.954	1
NKX3-1	9q-Amp	0.954	1
NKX3-1	8q-Del	0.954	1
NKX3-1	Amp_12q23.1	0.954	1
NKX3-1	Amp_13q12.11	0.954	1
NKX3-1	Amp_16q11.2	0.954	1
SMAD4	CDKN1B	0.954	1
SMAD4	CNTNAP1	0.954	1
SMAD4	MLLT10	0.954	1
SMAD4	SMG7	0.954	1
SMAD4	TCEB3	0.954	1
SMAD4	TNRC18	0.954	1
SMAD4	ZNF709	0.954	1
SMAD4	Amp_Xp21.1	0.954	1
SMAD4	Amp_Xq25	0.954	1
CDKN1B	EDC4	0.954	1
CDKN1B	9q-Amp	0.954	1
CDKN1B	8q-Del	0.954	1
CDKN1B	Amp_12q23.1	0.954	1
CDKN1B	Amp_13q12.11	0.954	1
CDKN1B	Amp_16q11.2	0.954	1
CDK12	3p-Amp	0.954	1
CDK12	10q-Del	0.954	1
CDK12	22q-Del	0.954	1
CDK12	Amp_4q13.3	0.954	1
CDK12	Amp_15q11.2	0.954	1
CNTNAP1	EDC4	0.954	1
CNTNAP1	RNF31	0.954	1
CNTNAP1	1q-Amp	0.954	1
CNTNAP1	9q-Amp	0.954	1
CNTNAP1	8q-Del	0.954	1
CNTNAP1	Amp_13q12.11	0.954	1
CNTNAP1	Amp_16q11.2	0.954	1
EDC4	MLLT10	0.954	1
EDC4	SMG7	0.954	1
EDC4	TCEB3	0.954	1
EDC4	TNRC18	0.954	1
EDC4	ZNF709	0.954	1
EDC4	Amp_Xp21.1	0.954	1
EDC4	Amp_Xq25	0.954	1
KDM6A	3p-Amp	0.954	1
KDM6A	10q-Del	0.954	1
KDM6A	22q-Del	0.954	1
KDM6A	Amp_4q13.3	0.954	1
KDM6A	Amp_15q11.2	0.954	1
MLLT10	RNF31	0.954	1
MLLT10	1q-Amp	0.954	1
MLLT10	9q-Amp	0.954	1
MLLT10	8q-Del	0.954	1
MLLT10	Amp_13q12.11	0.954	1
RNF31	TCEB3	0.954	1
RNF31	TNRC18	0.954	1
RNF31	Amp_Xp21.1	0.954	1
RNF31	Amp_Xq25	0.954	1
RPTN	10q-Del	0.954	1
RPTN	22q-Del	0.954	1
RPTN	Amp_4q13.3	0.954	1
RPTN	Amp_15q11.2	0.954	1
SMG7	1q-Amp	0.954	1
SMG7	9q-Amp	0.954	1
SMG7	8q-Del	0.954	1
SMG7	Amp_12q23.1	0.954	1
SMG7	Amp_13q12.11	0.954	1
SMG7	Amp_16q11.2	0.954	1
TCEB3	1q-Amp	0.954	1
TCEB3	9q-Amp	0.954	1
TCEB3	8q-Del	0.954	1
TCEB3	Amp_12q23.1	0.954	1
TCEB3	Amp_13q12.11	0.954	1
TCEB3	Amp_16q11.2	0.954	1
TNRC18	1q-Amp	0.954	1
TNRC18	9q-Amp	0.954	1
TNRC18	8q-Del	0.954	1
TNRC18	Amp_12q23.1	0.954	1
TNRC18	Amp_13q12.11	0.954	1
TNRC18	Amp_16q11.2	0.954	1
ZMYM3	3p-Amp	0.954	1
ZMYM3	10q-Del	0.954	1
ZMYM3	22q-Del	0.954	1
ZMYM3	Amp_4q13.3	0.954	1
ZMYM3	Amp_15q11.2	0.954	1
ZNF709	1q-Amp	0.954	1
ZNF709	9q-Amp	0.954	1
ZNF709	8q-Del	0.954	1
ZNF709	Amp_12q23.1	0.954	1
ZNF709	Amp_13q12.11	0.954	1
1q-Amp	Amp_Xp21.1	0.954	1
1q-Amp	Amp_Xq25	0.954	1
3p-Amp	Amp_1q22	0.954	1
3p-Amp	Amp_Xp22.11	0.954	1
3q-Amp	10q-Del	0.954	1
3q-Amp	22q-Del	0.954	1
3q-Amp	Amp_4q13.3	0.954	1
3q-Amp	Amp_15q11.2	0.954	1
9q-Amp	Amp_Xp21.1	0.954	1
9q-Amp	Amp_Xq25	0.954	1
10q-Del	6q-Del	0.954	1
10q-Del	Amp_1q22	0.954	1
10q-Del	Amp_Xp22.11	0.954	1
10q-Del	Del_6p25.1	0.954	1
22q-Del	6q-Del	0.954	1
22q-Del	Amp_1q22	0.954	1
22q-Del	Amp_Xp22.11	0.954	1
22q-Del	Del_6p25.1	0.954	1
6q-Del	Amp_15q11.2	0.954	1
8q-Del	Amp_Xp21.1	0.954	1
8q-Del	Amp_Xq25	0.954	1
Amp_1q22	Amp_15q11.2	0.954	1
Amp_4q13.3	Amp_Xp22.11	0.954	1
Amp_4q13.3	Del_6p25.1	0.954	1
Amp_8q22.1	Del_13q22.1	0.954	1
Amp_12q23.1	Amp_Xp21.1	0.954	1
Amp_12q23.1	Amp_Xq25	0.954	1
Amp_13q12.11	Amp_Xp21.1	0.954	1
Amp_13q12.11	Amp_Xq25	0.954	1
Amp_15q11.2	Amp_Xp22.11	0.954	1
Amp_15q11.2	Del_6p25.1	0.954	1
Amp_16q11.2	Amp_Xq25	0.954	1
OR4D5	8q-Amp	0.955	1
MED15	Del_5q13.2	0.955	1
TP53BP1	8q-Amp	0.955	1
8q-Amp	Del_11p11.2	0.955	1
Amp_11q13.2	Del_5q13.2	0.955	1
Amp_Xq21.1	Del_2q22.3	0.955	1
Del_2q22.3	Del_12q24.32	0.955	1
Del_5q13.2	Del_12q24.32	0.955	1
KIDINS220	Del_18q23	0.956	1
MLLT10	Del_21q22.3	0.956	1
RNF31	Del_18q23	0.956	1
TNRC18	Del_21q22.3	0.956	1
9q-Amp	Del_18q23	0.956	1
12p-Del	16q-Del	0.956	1
13q-Del	Del_2q22.1	0.956	1
Amp_12q23.1	Del_18q23	0.956	1
Amp_Xq25	Del_21q22.3	0.956	1
Del_13q14.13	Del_19q13.2	0.956	1
ATM	Del_18q21.31	0.957	1
NTM	Del_16q22.3	0.957	1
OR4D5	Del_16q22.3	0.957	1
10p-Del	13q-Del	0.957	1
10p-Del	Amp_3q21.3	0.957	1
10p-Del	Del_21q22.2	0.957	1
13q-Del	Amp_17q23.2	0.957	1
13q-Del	Amp_20q13.2	0.957	1
18q-Del	Del_11q23.2	0.957	1
8p-Del	Amp_Xq21.1	0.957	1
8p-Del	Del_11p11.2	0.957	1
Xq-Del	Del_16q22.3	0.957	1
Amp_3q21.3	Amp_17q23.2	0.957	1
Amp_3q21.3	Amp_20q13.2	0.957	1
Amp_17q23.2	Del_4q28.2	0.957	1
Amp_17q23.2	Del_21q22.2	0.957	1
Amp_20q13.2	Del_4q28.2	0.957	1
Amp_20q13.2	Del_21q22.2	0.957	1
Del_1q42.3	Del_18q21.31	0.957	1
Del_10q23.31	Del_13q22.1	0.957	1
CTNNB1	8p-Amp	0.958	1
CTNNB1	Del_15q21.3	0.958	1
PIK3CA	12p-Del	0.958	1
PIK3CA	Del_15q21.3	0.958	1
7q-Amp	Del_1p31.3	0.958	1
8p-Amp	Del_1p22.1	0.958	1
8p-Amp	Del_9p23	0.958	1
8p-Amp	Del_19q13.2	0.958	1
12p-Del	Del_9p23	0.958	1
12p-Del	Del_19q13.2	0.958	1
Del_1p31.3	Del_1q42.3	0.958	1
Del_1p31.3	Del_6q14.3	0.958	1
Del_1p22.1	Del_15q21.3	0.958	1
Del_1q42.3	Del_21q22.3	0.958	1
Del_8p21.3	Del_11p11.2	0.958	1
Del_11q22.3	Del_15q21.3	0.958	1
IDH1	18q-Del	0.959	1
LILRB5	18p-Del	0.959	1
TP53	MLLT10	0.959	1
TP53	SMG7	0.959	1
TP53	TCEB3	0.959	1
TP53	TNRC18	0.959	1
MLLT10	18q-Del	0.959	1
TNRC18	18q-Del	0.959	1
18p-Del	6q-Del	0.959	1
18q-Del	Amp_Xp21.1	0.959	1
Amp_3q21.3	Del_10q23.31	0.959	1
Del_1p31.3	Del_11p11.2	0.959	1
Del_1p31.3	Del_12q24.32	0.959	1
Del_2q22.3	Del_5q11.2	0.959	1
Del_8p21.3	Del_11q23.2	0.959	1
Del_13q14.13	Del_17q21.31	0.959	1
FAM47C	Del_21q22.2	0.96	1
8q-Amp	Del_2q22.3	0.96	1
13q-Del	Amp_8p11.23	0.96	1
Amp_7p14.3	Del_5q11.2	0.96	1
Amp_7q22.1	Del_5q11.2	0.96	1
Amp_14q21.1	Del_21q22.2	0.96	1
Del_3p13	Del_18q23	0.96	1
KIDINS220	Del_18q21.31	0.961	1
PIK3CA	Del_21q22.3	0.961	1
RNF31	Del_18q21.31	0.961	1
8p-Amp	10p-Del	0.961	1
8p-Amp	Amp_17q23.2	0.961	1
8p-Amp	Amp_20q13.2	0.961	1
9q-Amp	Del_18q21.31	0.961	1
10p-Del	12p-Del	0.961	1
10p-Del	Del_15q21.3	0.961	1
12p-Del	Amp_17q23.2	0.961	1
12p-Del	Amp_20q13.2	0.961	1
8p-Del	Amp_8p11.23	0.961	1
Amp_8p11.23	Del_16q22.3	0.961	1
Amp_12q23.1	Del_18q21.31	0.961	1
Amp_17q23.2	Del_15q21.3	0.961	1
Amp_20q13.2	Del_15q21.3	0.961	1
Del_8p23.2	Del_13q22.1	0.961	1
Del_11q23.2	Del_16q24.1	0.961	1
Del_18q21.31	Del_21q22.3	0.961	1
Del_19q13.2	Del_21q22.3	0.961	1
NTM	3p-Amp	0.962	1
NTM	10q-Del	0.962	1
NTM	22q-Del	0.962	1
NTM	Amp_4q13.3	0.962	1
NTM	Amp_15q11.2	0.962	1
OR4D5	3p-Amp	0.962	1
OR4D5	10q-Del	0.962	1
OR4D5	22q-Del	0.962	1
OR4D5	Amp_4q13.3	0.962	1
PTEN	17p-Del	0.962	1
MED15	10q-Del	0.962	1
MED15	22q-Del	0.962	1
MED15	Amp_4q13.3	0.962	1
MED15	Amp_15q11.2	0.962	1
TCEB3	16q-Del	0.962	1
TP53BP1	3p-Amp	0.962	1
TP53BP1	10q-Del	0.962	1
TP53BP1	22q-Del	0.962	1
TP53BP1	Amp_4q13.3	0.962	1
TP53BP1	Amp_15q11.2	0.962	1
ZNF709	16q-Del	0.962	1
3p-Amp	Xq-Del	0.962	1
3p-Amp	Amp_11q13.2	0.962	1
3p-Amp	Amp_Xq21.1	0.962	1
3p-Amp	Del_6q14.3	0.962	1
3p-Amp	Del_11p11.2	0.962	1
3p-Amp	Del_12q24.32	0.962	1
8q-Amp	13q-Del	0.962	1
10q-Del	Xq-Del	0.962	1
10q-Del	Amp_11q13.2	0.962	1
10q-Del	Del_11p11.2	0.962	1
10q-Del	Del_12q24.32	0.962	1
16q-Del	Amp_Xp21.1	0.962	1
17p-Del	Amp_7p14.3	0.962	1
22q-Del	Xq-Del	0.962	1
22q-Del	Amp_11q13.2	0.962	1
22q-Del	Amp_Xq21.1	0.962	1
22q-Del	Del_11p11.2	0.962	1
22q-Del	Del_12q24.32	0.962	1
Xq-Del	Amp_4q13.3	0.962	1
Xq-Del	Amp_15q11.2	0.962	1
Amp_3q21.3	Del_5q13.2	0.962	1
Amp_4q13.3	Amp_11q13.2	0.962	1
Amp_4q13.3	Amp_Xq21.1	0.962	1
Amp_4q13.3	Del_6q14.3	0.962	1
Amp_4q13.3	Del_11p11.2	0.962	1
Amp_4q13.3	Del_12q24.32	0.962	1
Amp_7q22.1	Del_11q23.2	0.962	1
Amp_8q22.1	Del_2q22.1	0.962	1
Amp_11q13.2	Amp_15q11.2	0.962	1
Amp_15q11.2	Amp_Xq21.1	0.962	1
Amp_15q11.2	Del_6q14.3	0.962	1
Amp_15q11.2	Del_11p11.2	0.962	1
Amp_15q11.2	Del_12q24.32	0.962	1
Del_2q22.3	Del_12p13.1	0.962	1
ATM	Amp_9q33.3	0.963	1
ATM	Amp_Xq27.1	0.963	1
CTNNB1	TP53	0.963	1
CTNNB1	Del_8p21.3	0.963	1
FOXA1	Amp_9q33.3	0.963	1
TP53	Del_8p21.3	0.963	1
TP53	Del_19q13.2	0.963	1
PIK3CA	18q-Del	0.963	1
3q-Amp	Del_8p23.2	0.963	1
18q-Del	Del_11q22.3	0.963	1
22q-Del	Del_10q23.31	0.963	1
Amp_3q26.2	Del_6q14.3	0.963	1
Amp_4q13.3	Del_10q23.31	0.963	1
Amp_9q33.3	Del_1q42.3	0.963	1
Amp_Xp22.11	Del_8p23.2	0.963	1
Del_2q22.3	Del_16q22.3	0.963	1
Del_8p21.3	Del_11q22.3	0.963	1
LILRB5	7p-Amp	0.964	1
LILRB5	Amp_3q26.2	0.964	1
CDK12	7p-Amp	0.964	1
CDK12	Amp_3q26.2	0.964	1
KDM6A	7p-Amp	0.964	1
RPTN	Amp_3q26.2	0.964	1
7p-Amp	6q-Del	0.964	1
7p-Amp	Amp_Xp22.11	0.964	1
7p-Amp	Del_6p25.1	0.964	1
18p-Del	8p-Del	0.964	1
6q-Del	Amp_3q26.2	0.964	1
Amp_1q22	Amp_3q26.2	0.964	1
Amp_14q21.1	Del_5q21.1	0.964	1
Del_12q24.32	Del_17p13.1	0.964	1
CTNNB1	10p-Del	0.965	1
CTNNB1	Amp_17q23.2	0.965	1
CTNNB1	Amp_20q13.2	0.965	1
KIDINS220	LMOD2	0.965	1
KIDINS220	RNF31	0.965	1
KIDINS220	1q-Amp	0.965	1
KIDINS220	9q-Amp	0.965	1
KIDINS220	8q-Del	0.965	1
KIDINS220	Amp_12q23.1	0.965	1
KIDINS220	Amp_13q12.11	0.965	1
KIDINS220	Amp_16q11.2	0.965	1
LILRB5	Del_13q14.13	0.965	1
LMOD2	SMAD4	0.965	1
LMOD2	EDC4	0.965	1
LMOD2	RNF31	0.965	1
LMOD2	1q-Amp	0.965	1
LMOD2	9q-Amp	0.965	1
LMOD2	8q-Del	0.965	1
LMOD2	Amp_12q23.1	0.965	1
LMOD2	Amp_13q12.11	0.965	1
LMOD2	Amp_16q11.2	0.965	1
PTEN	Del_3p13	0.965	1
SMAD4	RNF31	0.965	1
SMAD4	1q-Amp	0.965	1
SMAD4	9q-Amp	0.965	1
SMAD4	8q-Del	0.965	1
SMAD4	Amp_12q23.1	0.965	1
SMAD4	Amp_13q12.11	0.965	1
SMAD4	Amp_16q11.2	0.965	1
SPOP	7p-Amp	0.965	1
EDC4	RNF31	0.965	1
EDC4	1q-Amp	0.965	1
EDC4	9q-Amp	0.965	1
EDC4	8q-Del	0.965	1
EDC4	Amp_12q23.1	0.965	1
EDC4	Amp_13q12.11	0.965	1
EDC4	Amp_16q11.2	0.965	1
KDM6A	Del_13q14.13	0.965	1
PIK3CA	10p-Del	0.965	1
PIK3CA	Amp_17q23.2	0.965	1
PIK3CA	Amp_20q13.2	0.965	1
RNF31	1q-Amp	0.965	1
RNF31	9q-Amp	0.965	1
RNF31	8q-Del	0.965	1
RNF31	Amp_12q23.1	0.965	1
RNF31	Amp_13q12.11	0.965	1
RNF31	Amp_16q11.2	0.965	1
RPTN	Del_13q14.13	0.965	1
TCEB3	Del_16q24.1	0.965	1
ZMYM3	Del_13q14.13	0.965	1
ZNF709	Del_16q24.1	0.965	1
1q-Amp	9q-Amp	0.965	1
1q-Amp	8q-Del	0.965	1
1q-Amp	Amp_12q23.1	0.965	1
1q-Amp	Amp_13q12.11	0.965	1
1q-Amp	Amp_16q11.2	0.965	1
1q-Amp	Del_8p21.3	0.965	1
3q-Amp	Del_13q14.13	0.965	1
9q-Amp	8q-Del	0.965	1
9q-Amp	Amp_12q23.1	0.965	1
9q-Amp	Amp_16q11.2	0.965	1
9q-Amp	Del_8p21.3	0.965	1
10p-Del	Del_1p22.1	0.965	1
10p-Del	Del_9p23	0.965	1
10p-Del	Del_19q13.2	0.965	1
8q-Del	Amp_12q23.1	0.965	1
8q-Del	Amp_13q12.11	0.965	1
8q-Del	Amp_16q11.2	0.965	1
Amp_12q23.1	Amp_13q12.11	0.965	1
Amp_12q23.1	Del_8p21.3	0.965	1
Amp_13q12.11	Amp_16q11.2	0.965	1
Amp_13q12.11	Del_8p21.3	0.965	1
Amp_17q23.2	Del_1p22.1	0.965	1
Amp_17q23.2	Del_9p23	0.965	1
Amp_17q23.2	Del_11q22.3	0.965	1
Amp_17q23.2	Del_19q13.2	0.965	1
Amp_20q13.2	Del_1p22.1	0.965	1
Amp_20q13.2	Del_9p23	0.965	1
Amp_20q13.2	Del_11q22.3	0.965	1
Amp_20q13.2	Del_19q13.2	0.965	1
Amp_Xp21.1	Del_16q24.1	0.965	1
Del_3p13	Del_16q22.3	0.965	1
Del_16q22.3	Del_17q21.31	0.965	1
CTNNB1	Del_11q22.3	0.966	1
PIK3CA	Del_1p22.1	0.966	1
PIK3CA	Del_19q13.2	0.966	1
TP53BP1	Del_13q22.1	0.966	1
Amp_11q13.2	Del_13q22.1	0.966	1
Del_9p23	Del_11q22.3	0.966	1
Del_11q22.3	Del_19q13.2	0.966	1
ATM	Del_13q22.1	0.967	1
SPOP	Amp_8p11.23	0.967	1
10q-Del	8p-Del	0.967	1
22q-Del	8p-Del	0.967	1
8p-Del	Amp_4q13.3	0.967	1
Amp_3q21.3	Del_1p31.3	0.967	1
Amp_4q13.3	Del_16q22.3	0.967	1
Amp_15q11.2	Del_16q22.3	0.967	1
Del_1p31.3	Del_5q11.2	0.967	1
Del_1q42.3	Del_13q22.1	0.967	1
Del_8p21.3	Del_21q22.2	0.967	1
EDC4	Del_5q11.2	0.968	1
MED15	17p-Del	0.968	1
TP53BP1	Del_11q23.2	0.968	1
1q-Amp	Del_5q11.2	0.968	1
13q-Del	8p-Del	0.968	1
16q-Del	Del_11q22.3	0.968	1
17p-Del	Amp_Xq21.1	0.968	1
17p-Del	Del_12q24.32	0.968	1
Amp_13q12.11	Del_5q11.2	0.968	1
Amp_16q11.2	Del_5q11.2	0.968	1
Del_8p23.2	Del_21q22.2	0.968	1
Del_11p11.2	Del_11q23.2	0.968	1
Del_11q23.2	Del_12q24.32	0.968	1
ATM	17p-Del	0.969	1
IDH1	3p-Amp	0.969	1
IDH1	22q-Del	0.969	1
IDH1	Amp_4q13.3	0.969	1
IDH1	Amp_15q11.2	0.969	1
LILRB5	Amp_7p14.3	0.969	1
LILRB5	Amp_7q22.1	0.969	1
NKX3-1	3p-Amp	0.969	1
NKX3-1	10q-Del	0.969	1
NKX3-1	22q-Del	0.969	1
NKX3-1	Amp_4q13.3	0.969	1
NKX3-1	Amp_15q11.2	0.969	1
NKX3-1	Del_2q22.1	0.969	1
PTEN	KDM6A	0.969	1
PTEN	ZMYM3	0.969	1
PTEN	6q-Del	0.969	1
PTEN	Amp_8q22.1	0.969	1
PTEN	Amp_8q24.21	0.969	1
PTEN	Amp_Xp22.11	0.969	1
PTEN	Del_6p25.1	0.969	1
CDKN1B	3p-Amp	0.969	1
CDKN1B	10q-Del	0.969	1
CDKN1B	22q-Del	0.969	1
CDKN1B	Amp_4q13.3	0.969	1
CDKN1B	Amp_15q11.2	0.969	1
CDK12	Amp_7p14.3	0.969	1
CNTNAP1	3p-Amp	0.969	1
CNTNAP1	10q-Del	0.969	1
CNTNAP1	22q-Del	0.969	1
CNTNAP1	Amp_4q13.3	0.969	1
CNTNAP1	Amp_15q11.2	0.969	1
FAM47C	10p-Del	0.969	1
FAM47C	Amp_17q23.2	0.969	1
FAM47C	Amp_20q13.2	0.969	1
KDM6A	Amp_7p14.3	0.969	1
KDM6A	Amp_7q22.1	0.969	1
MLLT10	3p-Amp	0.969	1
MLLT10	10q-Del	0.969	1
MLLT10	22q-Del	0.969	1
MLLT10	Amp_4q13.3	0.969	1
MLLT10	Amp_15q11.2	0.969	1
SMG7	3p-Amp	0.969	1
SMG7	10q-Del	0.969	1
SMG7	22q-Del	0.969	1
SMG7	Amp_4q13.3	0.969	1
SMG7	Amp_15q11.2	0.969	1
TCEB3	3p-Amp	0.969	1
TCEB3	10q-Del	0.969	1
TCEB3	22q-Del	0.969	1
TCEB3	Amp_4q13.3	0.969	1
TCEB3	Amp_15q11.2	0.969	1
TNRC18	3p-Amp	0.969	1
TNRC18	10q-Del	0.969	1
TNRC18	22q-Del	0.969	1
TNRC18	Amp_15q11.2	0.969	1
ZMYM3	Del_21q22.3	0.969	1
ZNF709	3p-Amp	0.969	1
ZNF709	10q-Del	0.969	1
ZNF709	22q-Del	0.969	1
ZNF709	Amp_4q13.3	0.969	1
3p-Amp	Amp_Xp21.1	0.969	1
3p-Amp	Amp_Xq25	0.969	1
10p-Del	Amp_8p11.23	0.969	1
10p-Del	Amp_14q21.1	0.969	1
10q-Del	Amp_Xp21.1	0.969	1
10q-Del	Amp_Xq25	0.969	1
13q-Del	Amp_9q33.3	0.969	1
22q-Del	Amp_Xp21.1	0.969	1
22q-Del	Amp_Xq25	0.969	1
6q-Del	Amp_7p14.3	0.969	1
6q-Del	Amp_7q22.1	0.969	1
Amp_1q22	Amp_7p14.3	0.969	1
Amp_3q21.3	Amp_9q33.3	0.969	1
Amp_4q13.3	Amp_Xp21.1	0.969	1
Amp_4q13.3	Amp_Xq25	0.969	1
Amp_7p14.3	Amp_Xp22.11	0.969	1
Amp_7p14.3	Del_6p25.1	0.969	1
Amp_8p11.23	Amp_17q23.2	0.969	1
Amp_8p11.23	Amp_20q13.2	0.969	1
Amp_9q33.3	Del_21q22.2	0.969	1
Amp_14q21.1	Amp_20q13.2	0.969	1
Amp_15q11.2	Amp_Xp21.1	0.969	1
Amp_15q11.2	Amp_Xq25	0.969	1
Amp_Xq27.1	Del_21q22.2	0.969	1
Del_1q42.3	Del_11q23.2	0.969	1
Del_6p25.1	Del_21q22.3	0.969	1
1q-Amp	Del_3p13	0.97	1
8q-Amp	Del_5q21.1	0.97	1
8q-Del	Del_3p13	0.97	1
8q-Del	Del_17q21.31	0.97	1
Amp_8q22.1	Del_2q22.3	0.97	1
Amp_9q33.3	Del_6q14.3	0.97	1
Amp_16q11.2	Del_3p13	0.97	1
NTM	18p-Del	0.971	1
PTEN	Del_8p21.3	0.971	1
MED15	18p-Del	0.971	1
10q-Del	Del_17p13.1	0.971	1
18p-Del	Del_11p11.2	0.971	1
22q-Del	Del_17p13.1	0.971	1
Del_5q13.2	Del_15q21.3	0.971	1
Del_12p13.1	Del_17p13.1	0.971	1
KIDINS220	Del_5q21.1	0.972	1
NKX3-1	Del_2q22.3	0.972	1
SMAD4	Amp_8q22.1	0.972	1
SMAD4	Amp_8q24.21	0.972	1
CNTNAP1	8q-Amp	0.972	1
CNTNAP1	Del_5q13.2	0.972	1
EDC4	Amp_8q22.1	0.972	1
EDC4	Del_5q21.1	0.972	1
MLLT10	8q-Amp	0.972	1
MLLT10	Del_5q13.2	0.972	1
SMG7	8q-Amp	0.972	1
TCEB3	Del_5q13.2	0.972	1
TNRC18	8q-Amp	0.972	1
ZNF709	8q-Amp	0.972	1
1q-Amp	Amp_8q24.21	0.972	1
1q-Amp	Del_5q21.1	0.972	1
7q-Amp	Del_16q24.1	0.972	1
Amp_8q22.1	Amp_12q23.1	0.972	1
Amp_12q23.1	Del_5q21.1	0.972	1
Amp_13q12.11	Del_5q21.1	0.972	1
Amp_16q11.2	Del_5q21.1	0.972	1
Amp_Xq25	Del_5q13.2	0.972	1
Del_12p13.1	Del_18q23	0.972	1
ATM	LILRB5	0.973	1
ATM	CDK12	0.973	1
ATM	3q-Amp	0.973	1
ATM	Amp_Xp22.11	0.973	1
FOXA1	LILRB5	0.973	1
FOXA1	CDK12	0.973	1
FOXA1	RPTN	0.973	1
FOXA1	3q-Amp	0.973	1
FOXA1	6q-Del	0.973	1
FOXA1	Amp_1q22	0.973	1
FOXA1	Del_6p25.1	0.973	1
LILRB5	7q-Amp	0.973	1
SPOP	Amp_7q22.1	0.973	1
CDK12	7q-Amp	0.973	1
FAM47C	Del_19q13.2	0.973	1
KDM6A	7q-Amp	0.973	1
PIK3CA	Del_12p13.1	0.973	1
3p-Amp	Del_13q22.1	0.973	1
3q-Amp	7q-Amp	0.973	1
7q-Amp	6q-Del	0.973	1
7q-Amp	Amp_Xp22.11	0.973	1
8p-Amp	Del_18q23	0.973	1
10p-Del	Amp_9q33.3	0.973	1
10p-Del	Amp_Xq27.1	0.973	1
10q-Del	Del_13q22.1	0.973	1
6q-Del	Del_1q42.3	0.973	1
Amp_8p11.23	Del_9p23	0.973	1
Amp_8p11.23	Del_11q22.3	0.973	1
Amp_9q33.3	Amp_20q13.2	0.973	1
Amp_14q21.1	Del_11q22.3	0.973	1
Amp_17q23.2	Amp_Xq27.1	0.973	1
Amp_20q13.2	Amp_Xq27.1	0.973	1
Del_1q42.3	Del_6p25.1	0.973	1
Del_9p23	Del_12p13.1	0.973	1
Del_16q24.1	Del_19q13.2	0.973	1
Del_18q23	Del_21q22.3	0.973	1
SMAD4	SPOP	0.974	1
SPOP	9q-Amp	0.974	1
TP53	Amp_14q21.1	0.974	1
7p-Amp	18q-Del	0.974	1
12p-Del	Amp_9q33.3	0.974	1
18q-Del	Amp_3q26.2	0.974	1
18q-Del	Amp_14q21.1	0.974	1
8p-Del	Del_13q22.1	0.974	1
Del_2q22.1	Del_11q23.2	0.974	1
Del_13q22.1	Del_16q22.3	0.974	1
NKX3-1	Del_1p31.3	0.975	1
TP53	Del_21q22.3	0.975	1
CNTNAP1	Del_6q14.3	0.975	1
TNRC18	Del_1p31.3	0.975	1
TP53BP1	7p-Amp	0.975	1
Amp_3q26.2	Del_11p11.2	0.975	1
Amp_3q26.2	Del_12q24.32	0.975	1
Amp_3q26.2	Del_16q22.3	0.975	1
Amp_Xp22.11	Del_18q21.31	0.975	1
Amp_Xp21.1	Del_6q14.3	0.975	1
Amp_Xq25	Del_1p31.3	0.975	1
Del_13q22.1	Del_16q24.1	0.975	1
SMG7	Del_10q23.31	0.976	1
TNRC18	Del_10q23.31	0.976	1
ZNF709	Del_10q23.31	0.976	1
13q-Del	Del_11q23.2	0.976	1
13q-Del	Del_17p13.1	0.976	1
16q-Del	Del_12p13.1	0.976	1
17p-Del	Amp_3q21.3	0.976	1
Del_4q28.2	Del_11q23.2	0.976	1
Del_8p23.2	Del_11q23.2	0.976	1
Del_17p13.1	Del_21q22.2	0.976	1
ATM	Amp_8q22.1	0.977	1
BRAF	10p-Del	0.977	1
BRAF	Amp_17q23.2	0.977	1
BRAF	Amp_20q13.2	0.977	1
FOXA1	Amp_8q22.1	0.977	1
KIDINS220	3p-Amp	0.977	1
KIDINS220	10q-Del	0.977	1
KIDINS220	22q-Del	0.977	1
KIDINS220	Amp_4q13.3	0.977	1
KIDINS220	Amp_15q11.2	0.977	1
LILRB5	10p-Del	0.977	1
LILRB5	Amp_3q21.3	0.977	1
LILRB5	Amp_17q23.2	0.977	1
LILRB5	Amp_20q13.2	0.977	1
LILRB5	Del_4q28.2	0.977	1
LMOD2	3p-Amp	0.977	1
LMOD2	10q-Del	0.977	1
LMOD2	22q-Del	0.977	1
LMOD2	Amp_4q13.3	0.977	1
LMOD2	Amp_15q11.2	0.977	1
SMAD4	3p-Amp	0.977	1
SMAD4	10q-Del	0.977	1
SMAD4	22q-Del	0.977	1
SMAD4	Amp_15q11.2	0.977	1
CDK12	10p-Del	0.977	1
CDK12	Amp_3q21.3	0.977	1
CDK12	Amp_20q13.2	0.977	1
CDK12	Del_16q24.1	0.977	1
EDC4	3p-Amp	0.977	1
EDC4	10q-Del	0.977	1
EDC4	22q-Del	0.977	1
EDC4	Amp_4q13.3	0.977	1
EDC4	Amp_15q11.2	0.977	1
KDM6A	10p-Del	0.977	1
KDM6A	13q-Del	0.977	1
KDM6A	Amp_17q23.2	0.977	1
KDM6A	Amp_20q13.2	0.977	1
KDM6A	Del_4q28.2	0.977	1
RNF31	3p-Amp	0.977	1
RNF31	10q-Del	0.977	1
RNF31	22q-Del	0.977	1
RNF31	Amp_4q13.3	0.977	1
RNF31	Amp_15q11.2	0.977	1
RPTN	10p-Del	0.977	1
RPTN	Amp_3q21.3	0.977	1
RPTN	Amp_17q23.2	0.977	1
RPTN	Amp_20q13.2	0.977	1
ZMYM3	10p-Del	0.977	1
ZMYM3	Amp_17q23.2	0.977	1
ZMYM3	Amp_20q13.2	0.977	1
ZMYM3	Del_21q22.2	0.977	1
1q-Amp	3p-Amp	0.977	1
1q-Amp	10q-Del	0.977	1
1q-Amp	22q-Del	0.977	1
1q-Amp	Amp_4q13.3	0.977	1
1q-Amp	Amp_15q11.2	0.977	1
3p-Amp	9q-Amp	0.977	1
3p-Amp	8q-Del	0.977	1
3p-Amp	Amp_12q23.1	0.977	1
3p-Amp	Amp_13q12.11	0.977	1
3p-Amp	Amp_16q11.2	0.977	1
3q-Amp	10p-Del	0.977	1
3q-Amp	Amp_17q23.2	0.977	1
3q-Amp	Amp_20q13.2	0.977	1
8q-Amp	Del_13q14.13	0.977	1
8q-Amp	Del_13q22.1	0.977	1
9q-Amp	10q-Del	0.977	1
9q-Amp	22q-Del	0.977	1
9q-Amp	Amp_4q13.3	0.977	1
9q-Amp	Amp_15q11.2	0.977	1
10p-Del	Amp_1q22	0.977	1
10p-Del	Amp_Xp22.11	0.977	1
10p-Del	Del_6p25.1	0.977	1
10q-Del	Amp_12q23.1	0.977	1
10q-Del	Amp_13q12.11	0.977	1
10q-Del	Amp_16q11.2	0.977	1
13q-Del	Amp_1q22	0.977	1
13q-Del	Amp_Xp22.11	0.977	1
13q-Del	Del_6p25.1	0.977	1
22q-Del	8q-Del	0.977	1
22q-Del	Amp_12q23.1	0.977	1
22q-Del	Amp_13q12.11	0.977	1
22q-Del	Amp_16q11.2	0.977	1
6q-Del	Amp_17q23.2	0.977	1
6q-Del	Amp_20q13.2	0.977	1
8q-Del	Amp_4q13.3	0.977	1
8q-Del	Amp_15q11.2	0.977	1
Amp_1q22	Amp_20q13.2	0.977	1
Amp_1q22	Del_4q28.2	0.977	1
Amp_1q22	Del_16q24.1	0.977	1
Amp_3q21.3	Amp_Xp22.11	0.977	1
Amp_3q21.3	Del_6p25.1	0.977	1
Amp_4q13.3	Amp_12q23.1	0.977	1
Amp_4q13.3	Amp_13q12.11	0.977	1
Amp_4q13.3	Amp_16q11.2	0.977	1
Amp_12q23.1	Amp_15q11.2	0.977	1
Amp_13q12.11	Amp_15q11.2	0.977	1
Amp_15q11.2	Amp_16q11.2	0.977	1
Amp_17q23.2	Del_6p25.1	0.977	1
Amp_20q13.2	Amp_Xp22.11	0.977	1
Amp_20q13.2	Del_6p25.1	0.977	1
Del_4q28.2	Del_6p25.1	0.977	1
Del_5q13.2	Del_13q14.13	0.977	1
Del_5q13.2	Del_13q22.1	0.977	1
KIDINS220	TP53	0.978	1
NTM	Amp_7p14.3	0.978	1
TP53	EDC4	0.978	1
TP53	RNF31	0.978	1
TP53	8q-Del	0.978	1
TP53	Amp_12q23.1	0.978	1
TP53	Amp_16q11.2	0.978	1
EDC4	18q-Del	0.978	1
PIK3CA	Del_2q22.3	0.978	1
TP53BP1	Amp_7p14.3	0.978	1
8p-Amp	Del_18q21.31	0.978	1
8q-Amp	Del_11q23.2	0.978	1
8q-Amp	Del_18q23	0.978	1
8q-Amp	Del_19q13.2	0.978	1
9q-Amp	18q-Del	0.978	1
17p-Del	Del_2q22.3	0.978	1
18q-Del	Amp_12q23.1	0.978	1
8p-Del	Amp_9q33.3	0.978	1
Xq-Del	Del_12p13.1	0.978	1
Amp_7q22.1	Del_8p23.2	0.978	1
Amp_8p11.23	Amp_14q21.1	0.978	1
Del_1p22.1	Del_5q13.2	0.978	1
Del_2q22.3	Del_18q23	0.978	1
Del_4q28.2	Del_5q11.2	0.978	1
Del_5q11.2	Del_21q22.2	0.978	1
Del_5q13.2	Del_11q23.2	0.978	1
Del_5q13.2	Del_18q23	0.978	1
Del_11p11.2	Del_12p13.1	0.978	1
Del_12p13.1	Del_12q24.32	0.978	1
ATM	7p-Amp	0.979	1
ATM	Amp_3q26.2	0.979	1
16q-Del	Del_5q11.2	0.979	1
Amp_9q33.3	Del_1p22.1	0.979	1
FOXA1	SPOP	0.98	1
NKX3-1	8p-Del	0.98	1
PTEN	18q-Del	0.98	1
PTEN	Del_13q14.13	0.98	1
SMAD4	16q-Del	0.98	1
CDKN1B	Del_11q23.2	0.98	1
EDC4	16q-Del	0.98	1
MLLT10	17p-Del	0.98	1
MLLT10	Del_11q23.2	0.98	1
SMG7	17p-Del	0.98	1
TCEB3	17p-Del	0.98	1
TCEB3	8p-Del	0.98	1
ZNF709	Del_16q22.3	0.98	1
1q-Amp	16q-Del	0.98	1
8p-Amp	Del_16q22.3	0.98	1
10q-Del	Del_12p13.1	0.98	1
12p-Del	Del_16q22.3	0.98	1
16q-Del	8q-Del	0.98	1
16q-Del	Amp_13q12.11	0.98	1
17p-Del	Amp_Xp21.1	0.98	1
17p-Del	Del_5q11.2	0.98	1
18p-Del	Del_21q22.2	0.98	1
18q-Del	Amp_7p14.3	0.98	1
Amp_Xp21.1	Del_16q22.3	0.98	1
BRAF	8p-Amp	0.981	1
LILRB5	8p-Amp	0.981	1
LILRB5	12p-Del	0.981	1
NTM	10p-Del	0.981	1
NTM	Amp_17q23.2	0.981	1
NTM	Amp_20q13.2	0.981	1
OR4D5	10p-Del	0.981	1
OR4D5	Amp_17q23.2	0.981	1
OR4D5	Amp_20q13.2	0.981	1
CDK12	Del_15q21.3	0.981	1
KDM6A	8p-Amp	0.981	1
MED15	10p-Del	0.981	1
MED15	Amp_17q23.2	0.981	1
MED15	Amp_20q13.2	0.981	1
TP53BP1	10p-Del	0.981	1
TP53BP1	Amp_17q23.2	0.981	1
TP53BP1	Amp_20q13.2	0.981	1
8p-Amp	6q-Del	0.981	1
8p-Amp	Amp_Xp22.11	0.981	1
10p-Del	Xq-Del	0.981	1
10p-Del	Amp_11q13.2	0.981	1
10p-Del	Amp_Xq21.1	0.981	1
10p-Del	Del_11p11.2	0.981	1
10p-Del	Del_12q24.32	0.981	1
Xq-Del	Amp_17q23.2	0.981	1
Xq-Del	Amp_20q13.2	0.981	1
Amp_3q21.3	Del_3p13	0.981	1
Amp_11q13.2	Amp_20q13.2	0.981	1
Amp_17q23.2	Amp_Xq21.1	0.981	1
Amp_17q23.2	Del_11p11.2	0.981	1
Amp_17q23.2	Del_12q24.32	0.981	1
Amp_20q13.2	Amp_Xq21.1	0.981	1
Amp_20q13.2	Del_11p11.2	0.981	1
Amp_20q13.2	Del_12q24.32	0.981	1
Del_5q21.1	Del_12p13.1	0.981	1
Del_6p25.1	Del_15q21.3	0.981	1
Del_12p13.1	Del_18q21.31	0.981	1
ATM	Amp_Xq21.1	0.982	1
ATM	Del_12q24.32	0.982	1
FOXA1	OR4D5	0.982	1
FOXA1	MED15	0.982	1
FOXA1	Xq-Del	0.982	1
FOXA1	Amp_11q13.2	0.982	1
FOXA1	Del_11p11.2	0.982	1
TP53	8q-Amp	0.982	1
TP53	Amp_8q22.1	0.982	1
TP53	Amp_8q24.21	0.982	1
TP53	Del_2q22.3	0.982	1
TP53	Del_5q13.2	0.982	1
MED15	Del_1q42.3	0.982	1
MLLT10	18p-Del	0.982	1
TP53BP1	7q-Amp	0.982	1
8p-Amp	17p-Del	0.982	1
8p-Amp	Del_8p23.2	0.982	1
8p-Amp	Del_11q23.2	0.982	1
12p-Del	17p-Del	0.982	1
16q-Del	Del_21q22.3	0.982	1
17p-Del	Del_1p31.3	0.982	1
18q-Del	Amp_8q22.1	0.982	1
18q-Del	Del_2q22.3	0.982	1
6q-Del	Del_5q11.2	0.982	1
Amp_1q22	Del_5q11.2	0.982	1
Amp_9q33.3	Del_17p13.1	0.982	1
Del_1q42.3	Del_12q24.32	0.982	1
ATM	Amp_7p14.3	0.983	1
ATM	Amp_7q22.1	0.983	1
PTEN	Del_1q42.3	0.983	1
13q-Del	Amp_8q22.1	0.983	1
13q-Del	Del_16q24.1	0.983	1
16q-Del	Del_3p13	0.983	1
16q-Del	Del_17q21.31	0.983	1
18p-Del	Del_2q22.3	0.983	1
Amp_3q21.3	Amp_8q22.1	0.983	1
Amp_3q21.3	Del_5q21.1	0.983	1
Amp_7q22.1	Del_16q22.3	0.983	1
Amp_8p11.23	Del_8p21.3	0.983	1
Del_1p22.1	Del_6q14.3	0.983	1
Del_8p23.2	Del_17q21.31	0.983	1
Del_12p13.1	Del_13q14.13	0.983	1
Del_13q14.13	Del_15q21.3	0.983	1
Del_16q24.1	Del_17q21.31	0.983	1
FOXA1	Del_6q14.3	0.984	1
IDH1	10p-Del	0.984	1
IDH1	Amp_17q23.2	0.984	1
IDH1	Amp_20q13.2	0.984	1
KIDINS220	Del_2q22.1	0.984	1
NKX3-1	10p-Del	0.984	1
NKX3-1	Amp_17q23.2	0.984	1
NKX3-1	Amp_20q13.2	0.984	1
SMAD4	Del_2q22.1	0.984	1
CDKN1B	Amp_17q23.2	0.984	1
CDKN1B	Amp_20q13.2	0.984	1
CNTNAP1	10p-Del	0.984	1
CNTNAP1	Amp_17q23.2	0.984	1
CNTNAP1	Amp_20q13.2	0.984	1
EDC4	Del_2q22.1	0.984	1
FAM47C	Amp_Xq27.1	0.984	1
MLLT10	10p-Del	0.984	1
MLLT10	Amp_17q23.2	0.984	1
MLLT10	Amp_20q13.2	0.984	1
SMG7	10p-Del	0.984	1
SMG7	Amp_17q23.2	0.984	1
SMG7	Amp_20q13.2	0.984	1
TCEB3	10p-Del	0.984	1
TCEB3	Amp_17q23.2	0.984	1
TCEB3	Amp_20q13.2	0.984	1
TCEB3	Del_17p13.1	0.984	1
TNRC18	10p-Del	0.984	1
TNRC18	Amp_17q23.2	0.984	1
TNRC18	Amp_20q13.2	0.984	1
ZNF709	10p-Del	0.984	1
ZNF709	Amp_17q23.2	0.984	1
ZNF709	Amp_20q13.2	0.984	1
1q-Amp	Del_2q22.1	0.984	1
8p-Amp	Del_8p21.3	0.984	1
8q-Amp	Del_18q21.31	0.984	1
10p-Del	Amp_Xp21.1	0.984	1
10p-Del	Amp_Xq25	0.984	1
13q-Del	Amp_3q26.2	0.984	1
6q-Del	Del_8p21.3	0.984	1
Amp_3q26.2	Del_4q28.2	0.984	1
Amp_8p11.23	Amp_9q33.3	0.984	1
Amp_9q33.3	Amp_14q21.1	0.984	1
Amp_13q12.11	Del_2q22.1	0.984	1
Amp_17q23.2	Amp_Xp21.1	0.984	1
Amp_17q23.2	Amp_Xq25	0.984	1
Amp_20q13.2	Amp_Xp21.1	0.984	1
Amp_20q13.2	Amp_Xq25	0.984	1
Del_12q24.32	Del_18q23	0.984	1
ATM	TP53	0.985	1
CTNNB1	KDM6A	0.985	1
CTNNB1	RPTN	0.985	1
CTNNB1	Amp_1q22	0.985	1
CTNNB1	Amp_Xp22.11	0.985	1
LILRB5	Amp_8q22.1	0.985	1
LILRB5	Amp_8q24.21	0.985	1
OR4D5	Del_4q28.2	0.985	1
PTEN	Del_18q23	0.985	1
SMAD4	8q-Amp	0.985	1
SMAD4	Del_5q13.2	0.985	1
TP53	Del_1q42.3	0.985	1
CDK12	Amp_8q24.21	0.985	1
CDK12	Del_11q22.3	0.985	1
EDC4	8q-Amp	0.985	1
EDC4	Del_2q22.3	0.985	1
EDC4	Del_13q14.13	0.985	1
KDM6A	Del_5q21.1	0.985	1
KDM6A	Del_6q14.3	0.985	1
KDM6A	Del_11q22.3	0.985	1
MED15	Amp_3q21.3	0.985	1
MED15	Del_4q28.2	0.985	1
PIK3CA	RPTN	0.985	1
PIK3CA	6q-Del	0.985	1
PIK3CA	Amp_1q22	0.985	1
PIK3CA	Amp_Xp22.11	0.985	1
TP53BP1	13q-Del	0.985	1
TP53BP1	Amp_3q21.3	0.985	1
ZMYM3	Del_19q13.2	0.985	1
1q-Amp	8q-Amp	0.985	1
1q-Amp	Del_5q13.2	0.985	1
3p-Amp	10q-Del	0.985	1
3p-Amp	22q-Del	0.985	1
3p-Amp	Amp_4q13.3	0.985	1
3p-Amp	Amp_15q11.2	0.985	1
3q-Amp	Del_5q21.1	0.985	1
3q-Amp	Del_19q13.2	0.985	1
7q-Amp	Del_8p21.3	0.985	1
8p-Amp	Del_17p13.1	0.985	1
8q-Amp	Amp_12q23.1	0.985	1
9q-Amp	Del_2q22.3	0.985	1
10q-Del	22q-Del	0.985	1
10q-Del	Amp_4q13.3	0.985	1
10q-Del	Amp_15q11.2	0.985	1
12p-Del	18p-Del	0.985	1
12p-Del	Del_17p13.1	0.985	1
13q-Del	Xq-Del	0.985	1
13q-Del	Amp_Xq21.1	0.985	1
13q-Del	Del_11p11.2	0.985	1
13q-Del	Del_12q24.32	0.985	1
18q-Del	Del_1q42.3	0.985	1
22q-Del	Amp_4q13.3	0.985	1
22q-Del	Amp_15q11.2	0.985	1
6q-Del	Amp_8q22.1	0.985	1
6q-Del	Del_1p22.1	0.985	1
6q-Del	Del_11q22.3	0.985	1
6q-Del	Del_19q13.2	0.985	1
8q-Del	Del_2q22.3	0.985	1
8q-Del	Del_5q13.2	0.985	1
8q-Del	Del_13q14.13	0.985	1
Amp_1q22	Amp_8q22.1	0.985	1
Amp_1q22	Del_5q21.1	0.985	1
Amp_1q22	Del_6q14.3	0.985	1
Amp_1q22	Del_9p23	0.985	1
Amp_1q22	Del_11q22.3	0.985	1
Amp_3q21.3	Del_11p11.2	0.985	1
Amp_3q21.3	Del_12q24.32	0.985	1
Amp_3q26.2	Amp_Xp21.1	0.985	1
Amp_4q13.3	Amp_15q11.2	0.985	1
Amp_8p11.23	Del_2q22.3	0.985	1
Amp_8q24.21	Amp_Xp22.11	0.985	1
Amp_12q23.1	Del_5q13.2	0.985	1
Amp_12q23.1	Del_8p23.2	0.985	1
Amp_13q12.11	Del_2q22.3	0.985	1
Amp_13q12.11	Del_5q13.2	0.985	1
Amp_13q12.11	Del_13q14.13	0.985	1
Amp_14q21.1	Del_2q22.3	0.985	1
Amp_16q11.2	Del_5q13.2	0.985	1
Amp_16q11.2	Del_13q14.13	0.985	1
Amp_Xp22.11	Del_19q13.2	0.985	1
Del_1p22.1	Del_6p25.1	0.985	1
Del_10q23.31	Del_13q14.13	0.985	1
Del_10q23.31	Del_19q13.2	0.985	1
TP53	Del_16q24.1	0.986	1
16q-Del	Amp_8q24.21	0.986	1
22q-Del	Del_18q21.31	0.986	1
Amp_8q24.21	Del_11q23.2	0.986	1
Del_13q14.13	Del_18q23	0.986	1
Del_13q22.1	Del_17p13.1	0.986	1
Del_18q21.31	Del_19q13.2	0.986	1
ATM	7q-Amp	0.987	1
ATM	Del_1q42.3	0.987	1
BRAF	SPOP	0.987	1
IDH1	PTEN	0.987	1
NTM	Del_15q21.3	0.987	1
OR4D5	8p-Amp	0.987	1
OR4D5	Del_15q21.3	0.987	1
PTEN	SMG7	0.987	1
PTEN	TNRC18	0.987	1
PTEN	13q-Del	0.987	1
PTEN	Amp_Xp21.1	0.987	1
SPOP	CDK12	0.987	1
SPOP	3q-Amp	0.987	1
EDC4	Del_1p31.3	0.987	1
TP53BP1	8p-Amp	0.987	1
7p-Amp	Del_5q13.2	0.987	1
8p-Amp	Del_11p11.2	0.987	1
12p-Del	Del_12q24.32	0.987	1
12p-Del	Del_17q21.31	0.987	1
16q-Del	Del_1q42.3	0.987	1
17p-Del	8p-Del	0.987	1
17p-Del	Del_9p23	0.987	1
17p-Del	Del_16q22.3	0.987	1
17p-Del	Del_19q13.2	0.987	1
8q-Del	Del_1p31.3	0.987	1
Xq-Del	Del_15q21.3	0.987	1
Amp_3q21.3	Amp_7q22.1	0.987	1
Amp_7q22.1	Amp_Xp21.1	0.987	1
Amp_13q12.11	Del_1p31.3	0.987	1
Amp_16q11.2	Del_1p31.3	0.987	1
Del_2q22.1	Del_12p13.1	0.987	1
Del_3p13	Del_17q21.31	0.987	1
Del_9p23	Del_11q23.2	0.987	1
Del_11p11.2	Del_15q21.3	0.987	1
Del_12q24.32	Del_15q21.3	0.987	1
Del_12q24.32	Del_18q21.31	0.987	1
Del_15q21.3	Del_17q21.31	0.987	1
KIDINS220	10p-Del	0.988	1
KIDINS220	Amp_17q23.2	0.988	1
KIDINS220	Amp_20q13.2	0.988	1
LILRB5	Amp_8p11.23	0.988	1
LMOD2	10p-Del	0.988	1
LMOD2	Amp_17q23.2	0.988	1
LMOD2	Amp_20q13.2	0.988	1
PTEN	Del_17p13.1	0.988	1
SMAD4	10p-Del	0.988	1
SMAD4	Amp_17q23.2	0.988	1
SMAD4	Amp_20q13.2	0.988	1
CDK12	FAM47C	0.988	1
EDC4	10p-Del	0.988	1
EDC4	Amp_17q23.2	0.988	1
EDC4	Amp_20q13.2	0.988	1
FAM47C	RPTN	0.988	1
RNF31	10p-Del	0.988	1
RNF31	Amp_17q23.2	0.988	1
RNF31	Amp_20q13.2	0.988	1
1q-Amp	Amp_17q23.2	0.988	1
1q-Amp	Amp_20q13.2	0.988	1
3q-Amp	Amp_8p11.23	0.988	1
3q-Amp	Amp_14q21.1	0.988	1
9q-Amp	10p-Del	0.988	1
9q-Amp	Amp_17q23.2	0.988	1
9q-Amp	Amp_20q13.2	0.988	1
10p-Del	8q-Del	0.988	1
10p-Del	Amp_12q23.1	0.988	1
10p-Del	Amp_13q12.11	0.988	1
10p-Del	Amp_16q11.2	0.988	1
8p-Del	Del_17q21.31	0.988	1
8q-Del	Amp_17q23.2	0.988	1
8q-Del	Amp_20q13.2	0.988	1
Amp_1q22	Amp_8p11.23	0.988	1
Amp_9q33.3	Del_8p23.2	0.988	1
Amp_12q23.1	Amp_17q23.2	0.988	1
Amp_12q23.1	Amp_20q13.2	0.988	1
Amp_13q12.11	Amp_20q13.2	0.988	1
Amp_14q21.1	Amp_Xp22.11	0.988	1
Amp_16q11.2	Amp_17q23.2	0.988	1
Amp_16q11.2	Amp_20q13.2	0.988	1
Del_1p22.1	Del_16q22.3	0.988	1
ATM	CDKN1B	0.989	1
ATM	SMG7	0.989	1
ATM	Amp_Xp21.1	0.989	1
FOXA1	CNTNAP1	0.989	1
FOXA1	SMG7	0.989	1
NKX3-1	Del_8p21.3	0.989	1
PTEN	Del_13q22.1	0.989	1
CDKN1B	Del_1q42.3	0.989	1
SMG7	Del_1q42.3	0.989	1
TNRC18	Del_8p21.3	0.989	1
7p-Amp	Del_5q11.2	0.989	1
8p-Amp	Del_5q21.1	0.989	1
10q-Del	Del_17q21.31	0.989	1
18p-Del	Del_1p22.1	0.989	1
18p-Del	Del_11q22.3	0.989	1
18p-Del	Del_19q13.2	0.989	1
18p-Del	Del_21q22.3	0.989	1
22q-Del	Del_3p13	0.989	1
6q-Del	8p-Del	0.989	1
8p-Del	Del_18q21.31	0.989	1
Amp_4q13.3	Del_3p13	0.989	1
Amp_9q33.3	Del_2q22.1	0.989	1
ATM	Amp_3q21.3	0.99	1
CTNNB1	Del_11p11.2	0.99	1
FOXA1	Amp_3q21.3	0.99	1
KIDINS220	17p-Del	0.99	1
LMOD2	Del_11q23.2	0.99	1
NTM	Del_9p23	0.99	1
SMAD4	17p-Del	0.99	1
SMAD4	Del_11q23.2	0.99	1
SMAD4	Del_16q24.1	0.99	1
CDKN1B	Del_12p13.1	0.99	1
PIK3CA	Del_12q24.32	0.99	1
TCEB3	Del_12p13.1	0.99	1
TP53BP1	Del_1p22.1	0.99	1
TP53BP1	Del_5q11.2	0.99	1
TP53BP1	Del_9p23	0.99	1
TP53BP1	Del_11q22.3	0.99	1
3p-Amp	Del_5q21.1	0.99	1
7q-Amp	Amp_3q21.3	0.99	1
8q-Amp	Del_2q22.1	0.99	1
9q-Amp	Del_16q24.1	0.99	1
17p-Del	Amp_12q23.1	0.99	1
18q-Del	6q-Del	0.99	1
8p-Del	Del_1q42.3	0.99	1
8p-Del	Del_2q22.3	0.99	1
8q-Del	Del_16q24.1	0.99	1
Xq-Del	Del_1p22.1	0.99	1
Amp_4q13.3	Amp_8q22.1	0.99	1
Amp_4q13.3	Amp_8q24.21	0.99	1
Amp_7p14.3	Del_5q13.2	0.99	1
Amp_7q22.1	Del_16q24.1	0.99	1
Amp_8q22.1	Amp_15q11.2	0.99	1
Amp_8q24.21	Amp_15q11.2	0.99	1
Amp_11q13.2	Del_9p23	0.99	1
Amp_11q13.2	Del_11q22.3	0.99	1
Amp_12q23.1	Del_11q23.2	0.99	1
Amp_12q23.1	Del_16q24.1	0.99	1
Amp_13q12.11	Del_11q23.2	0.99	1
Amp_16q11.2	Del_11q23.2	0.99	1
Amp_Xq21.1	Del_9p23	0.99	1
Del_1p22.1	Del_5q11.2	0.99	1
Del_1p22.1	Del_12q24.32	0.99	1
Del_1q42.3	Del_16q22.3	0.99	1
Del_2q22.3	Del_16q24.1	0.99	1
Del_5q11.2	Del_11p11.2	0.99	1
Del_9p23	Del_12q24.32	0.99	1
Del_11q22.3	Del_12q24.32	0.99	1
Del_12q24.32	Del_19q13.2	0.99	1
CTNNB1	7p-Amp	0.991	1
SPOP	3p-Amp	0.991	1
CDKN1B	13q-Del	0.991	1
CDKN1B	Del_4q28.2	0.991	1
CDK12	Amp_9q33.3	0.991	1
CNTNAP1	Amp_3q21.3	0.991	1
EDC4	18p-Del	0.991	1
KDM6A	Amp_Xq27.1	0.991	1
MED15	Del_16q24.1	0.991	1
MLLT10	Del_21q22.2	0.991	1
PIK3CA	Del_8p23.2	0.991	1
PIK3CA	Del_17p13.1	0.991	1
SMG7	13q-Del	0.991	1
TCEB3	Del_21q22.2	0.991	1
TNRC18	13q-Del	0.991	1
TNRC18	Amp_3q21.3	0.991	1
ZMYM3	16q-Del	0.991	1
ZNF709	Del_21q22.2	0.991	1
3q-Amp	16q-Del	0.991	1
3q-Amp	Amp_9q33.3	0.991	1
3q-Amp	Amp_Xq27.1	0.991	1
7p-Amp	Del_8p23.2	0.991	1
7p-Amp	Del_11q22.3	0.991	1
8p-Amp	Del_16q24.1	0.991	1
9q-Amp	18p-Del	0.991	1
13q-Del	16q-Del	0.991	1
13q-Del	Amp_Xp21.1	0.991	1
16q-Del	Amp_1q22	0.991	1
17p-Del	Amp_14q21.1	0.991	1
18p-Del	8q-Del	0.991	1
18p-Del	Amp_12q23.1	0.991	1
18p-Del	Amp_16q11.2	0.991	1
Amp_1q22	Amp_9q33.3	0.991	1
Amp_3q21.3	Amp_Xp21.1	0.991	1
Amp_8p11.23	Del_6q14.3	0.991	1
Amp_8q22.1	Del_18q23	0.991	1
Amp_8q24.21	Del_2q22.1	0.991	1
Amp_14q21.1	Del_6q14.3	0.991	1
Amp_14q21.1	Del_11q23.2	0.991	1
Amp_Xq21.1	Del_17q21.31	0.991	1
Del_13q22.1	Del_18q23	0.991	1
Del_15q21.3	Del_16q24.1	0.991	1
Del_17p13.1	Del_19q13.2	0.991	1
CTNNB1	Del_3p13	0.992	1
CTNNB1	Del_13q14.13	0.992	1
FOXA1	8p-Amp	0.992	1
PTEN	Del_1p31.3	0.992	1
SMAD4	7p-Amp	0.992	1
TP53	10q-Del	0.992	1
TP53	22q-Del	0.992	1
TP53	Amp_4q13.3	0.992	1
CDKN1B	Del_15q21.3	0.992	1
CNTNAP1	8p-Amp	0.992	1
PIK3CA	Del_13q14.13	0.992	1
RPTN	Del_13q22.1	0.992	1
SMG7	8p-Amp	0.992	1
TNRC18	8p-Amp	0.992	1
TP53BP1	Amp_8p11.23	0.992	1
TP53BP1	Del_5q21.1	0.992	1
1q-Amp	7p-Amp	0.992	1
3p-Amp	10p-Del	0.992	1
3p-Amp	Amp_17q23.2	0.992	1
3p-Amp	Amp_20q13.2	0.992	1
7p-Amp	Amp_16q11.2	0.992	1
10p-Del	10q-Del	0.992	1
10p-Del	22q-Del	0.992	1
10p-Del	Amp_4q13.3	0.992	1
10p-Del	Amp_15q11.2	0.992	1
10q-Del	Amp_17q23.2	0.992	1
10q-Del	Amp_20q13.2	0.992	1
12p-Del	Amp_Xq25	0.992	1
13q-Del	Del_4q28.2	0.992	1
17p-Del	Del_13q22.1	0.992	1
18p-Del	Amp_14q21.1	0.992	1
18q-Del	22q-Del	0.992	1
18q-Del	Del_12p13.1	0.992	1
22q-Del	Amp_17q23.2	0.992	1
22q-Del	Amp_20q13.2	0.992	1
Xq-Del	Amp_8p11.23	0.992	1
Amp_3q21.3	Del_4q28.2	0.992	1
Amp_3q26.2	Amp_8q22.1	0.992	1
Amp_3q26.2	Amp_8q24.21	0.992	1
Amp_3q26.2	Amp_13q12.11	0.992	1
Amp_3q26.2	Amp_16q11.2	0.992	1
Amp_3q26.2	Del_13q14.13	0.992	1
Amp_4q13.3	Amp_17q23.2	0.992	1
Amp_4q13.3	Amp_20q13.2	0.992	1
Amp_8p11.23	Del_11p11.2	0.992	1
Amp_8q22.1	Amp_11q13.2	0.992	1
Amp_11q13.2	Del_5q21.1	0.992	1
Amp_15q11.2	Amp_17q23.2	0.992	1
Amp_15q11.2	Amp_20q13.2	0.992	1
Del_1q42.3	Del_15q21.3	0.992	1
Del_2q22.3	Del_5q13.2	0.992	1
Del_3p13	Del_19q13.2	0.992	1
Del_5q11.2	Del_16q24.1	0.992	1
Del_11q22.3	Del_13q14.13	0.992	1
Del_13q22.1	Del_19q13.2	0.992	1
BRAF	RPTN	0.993	1
BRAF	ZMYM3	0.993	1
BRAF	Amp_Xp22.11	0.993	1
CTNNB1	PTEN	0.993	1
CTNNB1	Amp_7q22.1	0.993	1
FOXA1	8q-Amp	0.993	1
LMOD2	PTEN	0.993	1
SMAD4	Amp_7q22.1	0.993	1
CDK12	RPTN	0.993	1
CDK12	Amp_Xp22.11	0.993	1
PIK3CA	Amp_8q22.1	0.993	1
PIK3CA	Del_8p21.3	0.993	1
RPTN	ZMYM3	0.993	1
RPTN	3q-Amp	0.993	1
RPTN	6q-Del	0.993	1
RPTN	Amp_Xp22.11	0.993	1
RPTN	Del_6p25.1	0.993	1
TNRC18	Del_18q23	0.993	1
ZMYM3	Amp_1q22	0.993	1
1q-Amp	Amp_7p14.3	0.993	1
3q-Amp	6q-Del	0.993	1
3q-Amp	Amp_Xp22.11	0.993	1
3q-Amp	Del_2q22.1	0.993	1
3q-Amp	Del_6p25.1	0.993	1
7p-Amp	Del_11q23.2	0.993	1
7q-Amp	Del_5q13.2	0.993	1
8q-Amp	Del_17p13.1	0.993	1
9q-Amp	Del_6q14.3	0.993	1
13q-Del	Del_8p21.3	0.993	1
16q-Del	Amp_4q13.3	0.993	1
6q-Del	Del_6p25.1	0.993	1
Amp_1q22	Amp_Xp22.11	0.993	1
Amp_1q22	Del_2q22.1	0.993	1
Amp_3q21.3	Del_8p21.3	0.993	1
Amp_7p14.3	Amp_16q11.2	0.993	1
Amp_7p14.3	Del_9p23	0.993	1
Amp_7p14.3	Del_11q22.3	0.993	1
Amp_7q22.1	Amp_16q11.2	0.993	1
Amp_7q22.1	Del_8p21.3	0.993	1
Amp_8q22.1	Del_19q13.2	0.993	1
Amp_8q24.21	Del_11q22.3	0.993	1
Amp_12q23.1	Del_6q14.3	0.993	1
Amp_13q12.11	Del_6q14.3	0.993	1
Amp_16q11.2	Del_6q14.3	0.993	1
Amp_Xp21.1	Del_18q23	0.993	1
Del_1p31.3	Del_16q22.3	0.993	1
Del_1p22.1	Del_5q21.1	0.993	1
Del_1q42.3	Del_17p13.1	0.993	1
Del_5q13.2	Del_17p13.1	0.993	1
Del_8p21.3	Del_9p23	0.993	1
Del_13q14.13	Del_17p13.1	0.993	1
Del_13q14.13	Del_18q21.31	0.993	1
ATM	KIDINS220	0.994	1
ATM	LMOD2	0.994	1
ATM	1q-Amp	0.994	1
ATM	8q-Del	0.994	1
ATM	Amp_16q11.2	0.994	1
CTNNB1	CDKN1B	0.994	1
CTNNB1	7q-Amp	0.994	1
CTNNB1	Amp_Xp21.1	0.994	1
FOXA1	9q-Amp	0.994	1
FOXA1	Amp_12q23.1	0.994	1
FOXA1	Amp_13q12.11	0.994	1
LILRB5	Del_5q13.2	0.994	1
NKX3-1	Del_9p23	0.994	1
OR4D5	Del_6q14.3	0.994	1
SMAD4	7q-Amp	0.994	1
SMAD4	Del_16q22.3	0.994	1
SPOP	Del_1p22.1	0.994	1
TP53	Amp_Xq21.1	0.994	1
CDKN1B	Del_11q22.3	0.994	1
CDK12	Del_2q22.3	0.994	1
KDM6A	Del_2q22.3	0.994	1
MLLT10	Del_11q22.3	0.994	1
PIK3CA	TNRC18	0.994	1
PIK3CA	ZNF709	0.994	1
PIK3CA	Amp_Xp21.1	0.994	1
PIK3CA	Amp_Xq25	0.994	1
TNRC18	Del_18q21.31	0.994	1
1q-Amp	7q-Amp	0.994	1
1q-Amp	Del_1q42.3	0.994	1
3p-Amp	Del_2q22.1	0.994	1
7q-Amp	Amp_16q11.2	0.994	1
7q-Amp	Del_11q22.3	0.994	1
8p-Amp	13q-Del	0.994	1
8p-Amp	16q-Del	0.994	1
8q-Amp	6q-Del	0.994	1
8q-Amp	Amp_Xp22.11	0.994	1
9q-Amp	Del_16q22.3	0.994	1
12p-Del	Del_21q22.2	0.994	1
18p-Del	Del_8p21.3	0.994	1
18q-Del	Del_11p11.2	0.994	1
18q-Del	Del_12q24.32	0.994	1
8q-Del	Del_1q42.3	0.994	1
8q-Del	Del_16q22.3	0.994	1
Amp_3q21.3	Del_2q22.1	0.994	1
Amp_3q21.3	Del_13q14.13	0.994	1
Amp_3q26.2	Amp_14q21.1	0.994	1
Amp_8q22.1	Del_5q13.2	0.994	1
Amp_8q22.1	Del_18q21.31	0.994	1
Amp_9q33.3	Amp_11q13.2	0.994	1
Amp_9q33.3	Del_8p21.3	0.994	1
Amp_9q33.3	Del_11p11.2	0.994	1
Amp_9q33.3	Del_12q24.32	0.994	1
Amp_11q13.2	Del_6q14.3	0.994	1
Amp_16q11.2	Del_16q22.3	0.994	1
Amp_Xp21.1	Del_19q13.2	0.994	1
Del_1p31.3	Del_5q13.2	0.994	1
Del_1p31.3	Del_16q24.1	0.994	1
Del_1q42.3	Del_9p23	0.994	1
Del_1q42.3	Del_11q22.3	0.994	1
Del_2q22.3	Del_6p25.1	0.994	1
Del_6q14.3	Del_11p11.2	0.994	1
Del_6q14.3	Del_12q24.32	0.994	1
NKX3-1	Amp_8p11.23	0.995	1
NTM	16q-Del	0.995	1
SMAD4	13q-Del	0.995	1
SMAD4	Del_17p13.1	0.995	1
TP53	Del_9p23	0.995	1
CNTNAP1	Amp_8p11.23	0.995	1
CNTNAP1	Amp_14q21.1	0.995	1
EDC4	Del_17p13.1	0.995	1
FAM47C	MLLT10	0.995	1
FAM47C	SMG7	0.995	1
MLLT10	Amp_14q21.1	0.995	1
1q-Amp	Amp_3q21.3	0.995	1
1q-Amp	Del_4q28.2	0.995	1
7p-Amp	Del_16q22.3	0.995	1
7q-Amp	Del_5q11.2	0.995	1
8q-Amp	Amp_4q13.3	0.995	1
8q-Amp	Amp_15q11.2	0.995	1
10q-Del	Del_2q22.3	0.995	1
12p-Del	Del_10q23.31	0.995	1
13q-Del	8q-Del	0.995	1
13q-Del	Amp_13q12.11	0.995	1
13q-Del	Amp_16q11.2	0.995	1
13q-Del	Del_2q22.3	0.995	1
13q-Del	Del_18q21.31	0.995	1
17p-Del	Del_13q14.13	0.995	1
18p-Del	Amp_9q33.3	0.995	1
18q-Del	Del_1p22.1	0.995	1
18q-Del	Del_19q13.2	0.995	1
22q-Del	Del_1p31.3	0.995	1
8p-Del	Del_5q11.2	0.995	1
Amp_3q21.3	Amp_12q23.1	0.995	1
Amp_3q21.3	Amp_16q11.2	0.995	1
Amp_4q13.3	Del_1p31.3	0.995	1
Amp_7p14.3	Amp_8q22.1	0.995	1
Amp_7p14.3	Del_8p23.2	0.995	1
Amp_7p14.3	Del_11q23.2	0.995	1
Amp_7q22.1	Amp_8p11.23	0.995	1
Amp_8q24.21	Del_6q14.3	0.995	1
Amp_9q33.3	Del_18q21.31	0.995	1
Amp_12q23.1	Del_21q22.2	0.995	1
Amp_13q12.11	Del_4q28.2	0.995	1
Amp_14q21.1	Amp_Xp21.1	0.995	1
Amp_16q11.2	Del_17p13.1	0.995	1
Amp_16q11.2	Del_21q22.2	0.995	1
Amp_Xq21.1	Del_10q23.31	0.995	1
Del_1p31.3	Del_6p25.1	0.995	1
Del_3p13	Del_8p23.2	0.995	1
Del_4q28.2	Del_5q13.2	0.995	1
Del_5q13.2	Del_21q22.2	0.995	1
Del_10q23.31	Del_15q21.3	0.995	1
Del_11q23.2	Del_13q14.13	0.995	1
Del_13q22.1	Del_18q21.31	0.995	1
BRAF	MED15	0.996	1
BRAF	TP53BP1	0.996	1
BRAF	Amp_Xq21.1	0.996	1
LILRB5	Xq-Del	0.996	1
NTM	ZMYM3	0.996	1
NTM	Amp_1q22	0.996	1
OR4D5	ZMYM3	0.996	1
OR4D5	Amp_1q22	0.996	1
SMAD4	8p-Amp	0.996	1
SMAD4	Del_15q21.3	0.996	1
CDKN1B	Del_13q14.13	0.996	1
CDK12	Xq-Del	0.996	1
CDK12	Del_11p11.2	0.996	1
CNTNAP1	Del_5q11.2	0.996	1
EDC4	8p-Amp	0.996	1
EDC4	Del_13q22.1	0.996	1
KDM6A	Xq-Del	0.996	1
KDM6A	Amp_11q13.2	0.996	1
KDM6A	Del_11q23.2	0.996	1
MED15	ZMYM3	0.996	1
MED15	3q-Amp	0.996	1
MED15	6q-Del	0.996	1
MED15	Del_6p25.1	0.996	1
MED15	Del_16q22.3	0.996	1
PIK3CA	13q-Del	0.996	1
PIK3CA	16q-Del	0.996	1
RPTN	TP53BP1	0.996	1
TNRC18	Del_5q11.2	0.996	1
TP53BP1	ZMYM3	0.996	1
TP53BP1	Amp_1q22	0.996	1
TP53BP1	Del_6p25.1	0.996	1
ZNF709	Amp_Xq27.1	0.996	1
1q-Amp	8p-Amp	0.996	1
3q-Amp	Amp_11q13.2	0.996	1
3q-Amp	Del_11p11.2	0.996	1
3q-Amp	Del_12q24.32	0.996	1
7p-Amp	Amp_3q26.2	0.996	1
7p-Amp	Del_16q24.1	0.996	1
7q-Amp	Amp_8p11.23	0.996	1
7q-Amp	Del_11q23.2	0.996	1
8p-Amp	Amp_13q12.11	0.996	1
10p-Del	Amp_17q23.2	0.996	1
10p-Del	Amp_20q13.2	0.996	1
10q-Del	17p-Del	0.996	1
13q-Del	Del_1p31.3	0.996	1
16q-Del	Del_1p22.1	0.996	1
16q-Del	Del_13q22.1	0.996	1
16q-Del	Del_19q13.2	0.996	1
17p-Del	6q-Del	0.996	1
17p-Del	Amp_4q13.3	0.996	1
17p-Del	Amp_Xp22.11	0.996	1
17p-Del	Del_1q42.3	0.996	1
6q-Del	Del_8p23.2	0.996	1
6q-Del	Del_11q23.2	0.996	1
8p-Del	Del_21q22.3	0.996	1
8q-Del	Del_15q21.3	0.996	1
Amp_3q21.3	Del_13q22.1	0.996	1
Amp_3q26.2	Amp_9q33.3	0.996	1
Amp_8p11.23	Del_5q21.1	0.996	1
Amp_8p11.23	Del_8p23.2	0.996	1
Amp_8q22.1	Amp_14q21.1	0.996	1
Amp_9q33.3	Amp_Xp21.1	0.996	1
Amp_11q13.2	Amp_Xp22.11	0.996	1
Amp_12q23.1	Del_15q21.3	0.996	1
Amp_13q12.11	Del_13q22.1	0.996	1
Amp_16q11.2	Del_13q22.1	0.996	1
Amp_17q23.2	Amp_20q13.2	0.996	1
Amp_Xp22.11	Del_12q24.32	0.996	1
Del_1p22.1	Del_16q24.1	0.996	1
Del_4q28.2	Del_11q22.3	0.996	1
Del_5q11.2	Del_11q23.2	0.996	1
Del_5q11.2	Del_18q23	0.996	1
Del_6p25.1	Del_13q14.13	0.996	1
Del_6q14.3	Del_16q24.1	0.996	1
Del_8p21.3	Del_12q24.32	0.996	1
Del_11q22.3	Del_21q22.2	0.996	1
Del_15q21.3	Del_18q23	0.996	1
Del_19q13.2	Del_21q22.2	0.996	1
BRAF	CDKN1B	0.997	1
BRAF	MLLT10	0.997	1
BRAF	TNRC18	0.997	1
BRAF	ZNF709	0.997	1
BRAF	Amp_Xq25	0.997	1
CTNNB1	LMOD2	0.997	1
CTNNB1	SMAD4	0.997	1
FOXA1	Amp_8q24.21	0.997	1
FOXA1	Del_5q21.1	0.997	1
IDH1	ZMYM3	0.997	1
LILRB5	ZNF709	0.997	1
LMOD2	Del_11q22.3	0.997	1
NTM	OR4D5	0.997	1
NTM	Del_12q24.32	0.997	1
OR4D5	Amp_Xq21.1	0.997	1
SMAD4	PIK3CA	0.997	1
SMAD4	Del_11q22.3	0.997	1
SMAD4	Del_12p13.1	0.997	1
SPOP	Del_13q22.1	0.997	1
TP53	Del_8p23.2	0.997	1
TP53	Del_16q22.3	0.997	1
CDKN1B	RPTN	0.997	1
CDKN1B	ZMYM3	0.997	1
CDKN1B	6q-Del	0.997	1
CDKN1B	Del_6p25.1	0.997	1
CDK12	CNTNAP1	0.997	1
CNTNAP1	Amp_1q22	0.997	1
CNTNAP1	Amp_8q24.21	0.997	1
EDC4	PIK3CA	0.997	1
EDC4	Del_1p22.1	0.997	1
EDC4	Del_19q13.2	0.997	1
MED15	TP53BP1	0.997	1
PIK3CA	8p-Amp	0.997	1
PIK3CA	Amp_16q11.2	0.997	1
RPTN	SMG7	0.997	1
SMG7	ZMYM3	0.997	1
SMG7	Amp_Xp22.11	0.997	1
TNRC18	6q-Del	0.997	1
TNRC18	Amp_Xp22.11	0.997	1
TP53BP1	Amp_11q13.2	0.997	1
TP53BP1	Del_5q13.2	0.997	1
ZMYM3	ZNF709	0.997	1
1q-Amp	Del_9p23	0.997	1
1q-Amp	Del_12p13.1	0.997	1
3q-Amp	Amp_Xp21.1	0.997	1
7p-Amp	Amp_4q13.3	0.997	1
7p-Amp	Del_8p21.3	0.997	1
8p-Amp	Del_2q22.3	0.997	1
8p-Amp	Del_11q22.3	0.997	1
8p-Amp	Del_13q14.13	0.997	1
8q-Amp	16q-Del	0.997	1
8q-Amp	17p-Del	0.997	1
9q-Amp	Del_11q22.3	0.997	1
13q-Del	17p-Del	0.997	1
16q-Del	Del_2q22.1	0.997	1
17p-Del	Del_8p21.3	0.997	1
17p-Del	Del_21q22.2	0.997	1
18p-Del	22q-Del	0.997	1
18p-Del	Del_8p23.2	0.997	1
18p-Del	Del_10q23.31	0.997	1
18q-Del	Del_5q13.2	0.997	1
18q-Del	Del_13q14.13	0.997	1
6q-Del	Del_18q23	0.997	1
Xq-Del	Amp_11q13.2	0.997	1
Xq-Del	Del_2q22.3	0.997	1
Amp_3q21.3	Amp_8p11.23	0.997	1
Amp_3q21.3	Amp_14q21.1	0.997	1
Amp_3q21.3	Del_5q11.2	0.997	1
Amp_3q21.3	Del_11q23.2	0.997	1
Amp_3q26.2	Amp_7p14.3	0.997	1
Amp_3q26.2	Amp_7q22.1	0.997	1
Amp_3q26.2	Del_8p21.3	0.997	1
Amp_3q26.2	Del_13q22.1	0.997	1
Amp_7p14.3	Del_16q22.3	0.997	1
Amp_8p11.23	Del_4q28.2	0.997	1
Amp_8q24.21	Del_13q14.13	0.997	1
Amp_11q13.2	Del_2q22.3	0.997	1
Amp_11q13.2	Del_11p11.2	0.997	1
Amp_12q23.1	Del_11q22.3	0.997	1
Amp_12q23.1	Del_12p13.1	0.997	1
Amp_13q12.11	Del_11q22.3	0.997	1
Amp_16q11.2	Del_11q22.3	0.997	1
Amp_16q11.2	Del_19q13.2	0.997	1
Amp_Xp22.11	Del_18q23	0.997	1
Del_1p31.3	Del_8p21.3	0.997	1
Del_1p31.3	Del_15q21.3	0.997	1
Del_2q22.1	Del_11q22.3	0.997	1
Del_3p13	Del_21q22.2	0.997	1
Del_5q13.2	Del_11p11.2	0.997	1
Del_5q13.2	Del_18q21.31	0.997	1
Del_6q14.3	Del_16q22.3	0.997	1
Del_8p23.2	Del_15q21.3	0.997	1
Del_8p21.3	Del_15q21.3	0.997	1
ATM	10q-Del	0.998	1
CTNNB1	PIK3CA	0.998	1
FOXA1	3p-Amp	0.998	1
FOXA1	Amp_15q11.2	0.998	1
IDH1	MED15	0.998	1
NKX3-1	Amp_Xq21.1	0.998	1
OR4D5	MLLT10	0.998	1
OR4D5	Amp_Xq25	0.998	1
PTEN	10q-Del	0.998	1
PTEN	Amp_4q13.3	0.998	1
SMAD4	Del_18q23	0.998	1
CDKN1B	MED15	0.998	1
CDK12	Amp_7q22.1	0.998	1
CNTNAP1	Amp_11q13.2	0.998	1
EDC4	Del_18q21.31	0.998	1
EDC4	Del_18q23	0.998	1
MED15	SMG7	0.998	1
MED15	ZNF709	0.998	1
MLLT10	Amp_Xq21.1	0.998	1
PIK3CA	8q-Amp	0.998	1
PIK3CA	Del_1p31.3	0.998	1
PIK3CA	Del_18q23	0.998	1
SMG7	TP53BP1	0.998	1
TCEB3	TP53BP1	0.998	1
TCEB3	Amp_Xq21.1	0.998	1
TP53BP1	ZNF709	0.998	1
ZMYM3	Del_16q24.1	0.998	1
1q-Amp	Amp_8p11.23	0.998	1
3p-Amp	Amp_3q21.3	0.998	1
3p-Amp	Del_4q28.2	0.998	1
3q-Amp	7p-Amp	0.998	1
3q-Amp	Amp_7p14.3	0.998	1
3q-Amp	Amp_7q22.1	0.998	1
7p-Amp	Amp_1q22	0.998	1
7q-Amp	16q-Del	0.998	1
7q-Amp	Amp_4q13.3	0.998	1
8p-Amp	Del_13q22.1	0.998	1
8q-Amp	Del_11q22.3	0.998	1
8q-Amp	Del_16q22.3	0.998	1
9q-Amp	Amp_8p11.23	0.998	1
10q-Del	13q-Del	0.998	1
12p-Del	Del_21q22.3	0.998	1
17p-Del	Amp_8q24.21	0.998	1
18p-Del	Del_1p31.3	0.998	1
18p-Del	Del_5q11.2	0.998	1
18p-Del	Del_12p13.1	0.998	1
22q-Del	Del_1q42.3	0.998	1
22q-Del	Del_21q22.2	0.998	1
6q-Del	Del_18q21.31	0.998	1
8p-Del	Del_18q23	0.998	1
8q-Del	Del_18q21.31	0.998	1
8q-Del	Del_18q23	0.998	1
Xq-Del	Del_11q23.2	0.998	1
Amp_1q22	Amp_7q22.1	0.998	1
Amp_3q21.3	Amp_4q13.3	0.998	1
Amp_3q21.3	Amp_8q24.21	0.998	1
Amp_3q26.2	Amp_Xp22.11	0.998	1
Amp_3q26.2	Del_6p25.1	0.998	1
Amp_3q26.2	Del_8p23.2	0.998	1
Amp_4q13.3	Amp_7q22.1	0.998	1
Amp_7p14.3	Del_16q24.1	0.998	1
Amp_7q22.1	Amp_Xp22.11	0.998	1
Amp_8q22.1	Del_4q28.2	0.998	1
Amp_8q24.21	Amp_9q33.3	0.998	1
Amp_8q24.21	Del_4q28.2	0.998	1
Amp_9q33.3	Amp_16q11.2	0.998	1
Amp_9q33.3	Del_4q28.2	0.998	1
Amp_9q33.3	Del_5q21.1	0.998	1
Amp_11q13.2	Del_11q23.2	0.998	1
Amp_13q12.11	Amp_14q21.1	0.998	1
Amp_14q21.1	Amp_16q11.2	0.998	1
Amp_15q11.2	Del_4q28.2	0.998	1
Amp_16q11.2	Del_18q21.31	0.998	1
Amp_16q11.2	Del_18q23	0.998	1
Amp_Xp21.1	Del_12q24.32	0.998	1
Amp_Xq21.1	Amp_Xq25	0.998	1
Amp_Xq25	Del_12q24.32	0.998	1
Del_1p31.3	Del_1p22.1	0.998	1
Del_1p31.3	Del_18q21.31	0.998	1
Del_1p22.1	Del_2q22.3	0.998	1
Del_1p22.1	Del_11q22.3	0.998	1
Del_1p22.1	Del_18q21.31	0.998	1
Del_1p22.1	Del_19q13.2	0.998	1
Del_1q42.3	Del_13q14.13	0.998	1
Del_5q11.2	Del_13q22.1	0.998	1
Del_5q13.2	Del_8p23.2	0.998	1
Del_5q13.2	Del_9p23	0.998	1
Del_5q13.2	Del_16q22.3	0.998	1
Del_9p23	Del_10q23.31	0.998	1
Del_18q23	Del_19q13.2	0.998	1
ATM	13q-Del	0.999	1
ATM	6q-Del	0.999	1
BRAF	RNF31	0.999	1
CTNNB1	Amp_4q13.3	0.999	1
CTNNB1	Del_13q22.1	0.999	1
FOXA1	Del_4q28.2	0.999	1
LILRB5	Del_5q11.2	0.999	1
LMOD2	KDM6A	0.999	1
NKX3-1	TCEB3	0.999	1
NTM	1q-Amp	0.999	1
OR4D5	1q-Amp	0.999	1
PTEN	Del_10q23.31	0.999	1
SMAD4	TP53	0.999	1
SMAD4	CDK12	0.999	1
SMAD4	18q-Del	0.999	1
SMAD4	Xq-Del	0.999	1
SMAD4	Amp_1q22	0.999	1
SMAD4	Del_5q11.2	0.999	1
SMAD4	Del_5q21.1	0.999	1
SMAD4	Del_11p11.2	0.999	1
SPOP	Del_2q22.3	0.999	1
SPOP	Del_5q13.2	0.999	1
TP53	12p-Del	0.999	1
TP53	16q-Del	0.999	1
TP53	Del_10q23.31	0.999	1
CDKN1B	RNF31	0.999	1
CDKN1B	SMG7	0.999	1
CDKN1B	ZNF709	0.999	1
CDKN1B	1q-Amp	0.999	1
CDKN1B	Del_13q22.1	0.999	1
CDK12	Amp_12q23.1	0.999	1
CDK12	Amp_13q12.11	0.999	1
CDK12	Del_5q21.1	0.999	1
CNTNAP1	Amp_12q23.1	0.999	1
EDC4	6q-Del	0.999	1
MED15	RNF31	0.999	1
MED15	8q-Del	0.999	1
MED15	Amp_3q26.2	0.999	1
MLLT10	Amp_12q23.1	0.999	1
MLLT10	Amp_16q11.2	0.999	1
MLLT10	Amp_Xq25	0.999	1
PIK3CA	Amp_4q13.3	0.999	1
PIK3CA	Del_5q11.2	0.999	1
PIK3CA	Del_13q22.1	0.999	1
RNF31	RPTN	0.999	1
RNF31	SMG7	0.999	1
RNF31	TP53BP1	0.999	1
RNF31	ZMYM3	0.999	1
RNF31	ZNF709	0.999	1
RPTN	Amp_16q11.2	0.999	1
RPTN	Del_4q28.2	0.999	1
SMG7	TNRC18	0.999	1
SMG7	ZNF709	0.999	1
TNRC18	17p-Del	0.999	1
TNRC18	Del_17p13.1	0.999	1
TP53BP1	1q-Amp	0.999	1
ZMYM3	1q-Amp	0.999	1
ZMYM3	Del_3p13	0.999	1
ZMYM3	Del_16q22.3	0.999	1
ZNF709	Amp_16q11.2	0.999	1
1q-Amp	6q-Del	0.999	1
1q-Amp	Amp_11q13.2	0.999	1
3p-Amp	Amp_Xq27.1	0.999	1
3q-Amp	13q-Del	0.999	1
3q-Amp	Amp_16q11.2	0.999	1
3q-Amp	Del_4q28.2	0.999	1
3q-Amp	Del_6q14.3	0.999	1
3q-Amp	Del_13q22.1	0.999	1
7p-Amp	Amp_3q21.3	0.999	1
7p-Amp	Amp_8q22.1	0.999	1
7p-Amp	Del_12q24.32	0.999	1
7q-Amp	Amp_1q22	0.999	1
7q-Amp	Amp_11q13.2	0.999	1
7q-Amp	Del_4q28.2	0.999	1
7q-Amp	Del_11p11.2	0.999	1
7q-Amp	Del_12q24.32	0.999	1
8p-Amp	Amp_1q22	0.999	1
8p-Amp	Amp_4q13.3	0.999	1
8p-Amp	Amp_9q33.3	0.999	1
8p-Amp	Amp_15q11.2	0.999	1
8p-Amp	Del_6q14.3	0.999	1
8q-Amp	Amp_7p14.3	0.999	1
8q-Amp	Amp_9q33.3	0.999	1
8q-Amp	Amp_14q21.1	0.999	1
8q-Amp	Del_5q13.2	0.999	1
8q-Amp	Del_8p21.3	0.999	1
9q-Amp	16q-Del	0.999	1
9q-Amp	Amp_8q22.1	0.999	1
9q-Amp	Amp_8q24.21	0.999	1
9q-Amp	Del_5q21.1	0.999	1
9q-Amp	Del_11p11.2	0.999	1
10q-Del	Del_9p23	0.999	1
12p-Del	Del_16q24.1	0.999	1
13q-Del	18q-Del	0.999	1
13q-Del	6q-Del	0.999	1
13q-Del	Amp_3q21.3	0.999	1
13q-Del	Amp_11q13.2	0.999	1
13q-Del	Del_6q14.3	0.999	1
13q-Del	Del_8p23.2	0.999	1
13q-Del	Del_18q23	0.999	1
16q-Del	17p-Del	0.999	1
16q-Del	Amp_16q11.2	0.999	1
16q-Del	Del_6q14.3	0.999	1
17p-Del	Del_6q14.3	0.999	1
18p-Del	Del_12q24.32	0.999	1
18p-Del	Del_15q21.3	0.999	1
18q-Del	8p-Del	0.999	1
18q-Del	8q-Del	0.999	1
18q-Del	Amp_9q33.3	0.999	1
18q-Del	Amp_16q11.2	0.999	1
18q-Del	Del_13q22.1	0.999	1
22q-Del	Amp_9q33.3	0.999	1
22q-Del	Del_1p22.1	0.999	1
22q-Del	Del_9p23	0.999	1
22q-Del	Del_11q22.3	0.999	1
22q-Del	Del_15q21.3	0.999	1
22q-Del	Del_19q13.2	0.999	1
6q-Del	Amp_3q21.3	0.999	1
6q-Del	Amp_13q12.11	0.999	1
6q-Del	Del_4q28.2	0.999	1
8p-Del	Del_6q14.3	0.999	1
8p-Del	Del_10q23.31	0.999	1
8p-Del	Del_13q14.13	0.999	1
8q-Del	Amp_Xq21.1	0.999	1
Xq-Del	Amp_13q12.11	0.999	1
Xq-Del	Del_5q11.2	0.999	1
Amp_1q22	Amp_3q21.3	0.999	1
Amp_1q22	Amp_12q23.1	0.999	1
Amp_1q22	Amp_13q12.11	0.999	1
Amp_3q21.3	Amp_7p14.3	0.999	1
Amp_3q21.3	Del_6q14.3	0.999	1
Amp_3q21.3	Del_8p23.2	0.999	1
Amp_3q26.2	Amp_11q13.2	0.999	1
Amp_7p14.3	Amp_8q24.21	0.999	1
Amp_7p14.3	Del_8p21.3	0.999	1
Amp_7p14.3	Del_11p11.2	0.999	1
Amp_7p14.3	Del_13q14.13	0.999	1
Amp_7q22.1	Amp_8q24.21	0.999	1
Amp_7q22.1	Del_12q24.32	0.999	1
Amp_8p11.23	Del_5q13.2	0.999	1
Amp_8q22.1	Amp_13q12.11	0.999	1
Amp_8q22.1	Amp_Xp22.11	0.999	1
Amp_8q22.1	Del_6q14.3	0.999	1
Amp_8q22.1	Del_13q14.13	0.999	1
Amp_8q24.21	Amp_12q23.1	0.999	1
Amp_8q24.21	Amp_13q12.11	0.999	1
Amp_8q24.21	Amp_16q11.2	0.999	1
Amp_8q24.21	Del_5q13.2	0.999	1
Amp_8q24.21	Del_17p13.1	0.999	1
Amp_9q33.3	Del_1p31.3	0.999	1
Amp_9q33.3	Del_5q13.2	0.999	1
Amp_9q33.3	Del_11q22.3	0.999	1
Amp_9q33.3	Del_13q14.13	0.999	1
Amp_9q33.3	Del_16q24.1	0.999	1
Amp_11q13.2	Amp_12q23.1	0.999	1
Amp_11q13.2	Amp_13q12.11	0.999	1
Amp_11q13.2	Del_4q28.2	0.999	1
Amp_12q23.1	Del_5q11.2	0.999	1
Amp_13q12.11	Amp_Xp22.11	0.999	1
Amp_13q12.11	Del_11p11.2	0.999	1
Amp_15q11.2	Del_15q21.3	0.999	1
Amp_16q11.2	Amp_Xp22.11	0.999	1
Amp_16q11.2	Amp_Xp21.1	0.999	1
Amp_16q11.2	Del_12q24.32	0.999	1
Amp_Xp21.1	Amp_Xq25	0.999	1
Amp_Xp21.1	Del_1p31.3	0.999	1
Del_1p31.3	Del_2q22.1	0.999	1
Del_1p31.3	Del_2q22.3	0.999	1
Del_1p31.3	Del_13q22.1	0.999	1
Del_1p31.3	Del_21q22.3	0.999	1
Del_2q22.1	Del_5q13.2	0.999	1
Del_2q22.3	Del_13q22.1	0.999	1
Del_3p13	Del_10q23.31	0.999	1
Del_4q28.2	Del_11p11.2	0.999	1
Del_5q11.2	Del_11q22.3	0.999	1
Del_5q11.2	Del_17p13.1	0.999	1
Del_5q21.1	Del_11q22.3	0.999	1
Del_6p25.1	Del_6q14.3	0.999	1
Del_6p25.1	Del_13q22.1	0.999	1
Del_6q14.3	Del_13q22.1	0.999	1
Del_8p23.2	Del_12q24.32	0.999	1
Del_8p21.3	Del_10q23.31	0.999	1
Del_8p21.3	Del_13q22.1	0.999	1
Del_8p21.3	Del_17q21.31	0.999	1
Del_9p23	Del_17p13.1	0.999	1
Del_11q22.3	Del_13q22.1	0.999	1
Del_12p13.1	Del_15q21.3	0.999	1
Del_12p13.1	Del_21q22.3	0.999	1
Del_13q14.13	Del_21q22.3	0.999	1
Del_16q22.3	Del_21q22.3	0.999	1
ATM	10p-Del	1	1
BRAF	OR4D5	1	1
BRAF	SMG7	1	1
FOXA1	TNRC18	1	1
IDH1	10q-Del	1	1
KIDINS220	SMAD4	1	1
KIDINS220	EDC4	1	1
LILRB5	9q-Amp	1	1
LILRB5	Amp_9q33.3	1	1
LILRB5	Amp_15q11.2	1	1
OR4D5	Amp_15q11.2	1	1
SMAD4	EDC4	1	1
SMAD4	Amp_4q13.3	1	1
SMAD4	Del_13q14.13	1	1
SMAD4	Del_13q22.1	1	1
SMAD4	Del_18q21.31	1	1
SPOP	Xq-Del	1	1
SPOP	Del_2q22.1	1	1
SPOP	Del_4q28.2	1	1
SPOP	Del_5q11.2	1	1
SPOP	Del_5q21.1	1	1
SPOP	Del_6q14.3	1	1
SPOP	Del_11p11.2	1	1
SPOP	Del_13q14.13	1	1
TP53	17p-Del	1	1
TP53	18p-Del	1	1
TP53	18q-Del	1	1
TP53	Del_12p13.1	1	1
TP53	Del_17p13.1	1	1
TP53	Del_18q21.31	1	1
TP53	Del_18q23	1	1
CDKN1B	TP53BP1	1	1
CDKN1B	10p-Del	1	1
CDK12	Amp_1q22	1	1
CDK12	Amp_11q13.2	1	1
CDK12	Amp_14q21.1	1	1
CDK12	Amp_17q23.2	1	1
EDC4	17p-Del	1	1
MED15	RPTN	1	1
MED15	3p-Amp	1	1
PIK3CA	Del_16q24.1	1	1
RPTN	ZNF709	1	1
RPTN	3p-Amp	1	1
TCEB3	12p-Del	1	1
TNRC18	Amp_4q13.3	1	1
ZNF709	Amp_15q11.2	1	1
1q-Amp	10p-Del	1	1
1q-Amp	Amp_1q22	1	1
1q-Amp	Del_6q14.3	1	1
1q-Amp	Del_11q22.3	1	1
1q-Amp	Del_11q23.2	1	1
3p-Amp	3q-Amp	1	1
3p-Amp	6q-Del	1	1
3p-Amp	Amp_3q26.2	1	1
3p-Amp	Del_6p25.1	1	1
3q-Amp	Amp_3q21.3	1	1
3q-Amp	Amp_3q26.2	1	1
7p-Amp	7q-Amp	1	1
7p-Amp	8p-Amp	1	1
7p-Amp	8q-Amp	1	1
7p-Amp	9q-Amp	1	1
7p-Amp	13q-Del	1	1
7p-Amp	16q-Del	1	1
7p-Amp	Xq-Del	1	1
7p-Amp	Amp_7p14.3	1	1
7p-Amp	Amp_7q22.1	1	1
7p-Amp	Amp_8p11.23	1	1
7p-Amp	Amp_8q24.21	1	1
7p-Amp	Amp_9q33.3	1	1
7p-Amp	Amp_11q13.2	1	1
7p-Amp	Amp_13q12.11	1	1
7p-Amp	Amp_Xp21.1	1	1
7p-Amp	Del_2q22.1	1	1
7p-Amp	Del_2q22.3	1	1
7p-Amp	Del_4q28.2	1	1
7p-Amp	Del_5q21.1	1	1
7p-Amp	Del_6q14.3	1	1
7p-Amp	Del_11p11.2	1	1
7p-Amp	Del_13q14.13	1	1
7p-Amp	Del_13q22.1	1	1
7q-Amp	8p-Amp	1	1
7q-Amp	8q-Amp	1	1
7q-Amp	9q-Amp	1	1
7q-Amp	13q-Del	1	1
7q-Amp	Xq-Del	1	1
7q-Amp	Amp_7p14.3	1	1
7q-Amp	Amp_7q22.1	1	1
7q-Amp	Amp_8q22.1	1	1
7q-Amp	Amp_8q24.21	1	1
7q-Amp	Amp_9q33.3	1	1
7q-Amp	Amp_13q12.11	1	1
7q-Amp	Amp_Xp21.1	1	1
7q-Amp	Del_2q22.1	1	1
7q-Amp	Del_2q22.3	1	1
7q-Amp	Del_5q21.1	1	1
7q-Amp	Del_6q14.3	1	1
7q-Amp	Del_13q14.13	1	1
7q-Amp	Del_13q22.1	1	1
8p-Amp	8q-Amp	1	1
8p-Amp	9q-Amp	1	1
8p-Amp	Xq-Del	1	1
8p-Amp	Amp_7p14.3	1	1
8p-Amp	Amp_7q22.1	1	1
8p-Amp	Amp_8p11.23	1	1
8p-Amp	Amp_8q22.1	1	1
8p-Amp	Amp_8q24.21	1	1
8p-Amp	Amp_11q13.2	1	1
8p-Amp	Del_2q22.1	1	1
8p-Amp	Del_4q28.2	1	1
8p-Amp	Del_5q11.2	1	1
8p-Amp	Del_5q13.2	1	1
8q-Amp	9q-Amp	1	1
8q-Amp	Xq-Del	1	1
8q-Amp	Amp_1q22	1	1
8q-Amp	Amp_7q22.1	1	1
8q-Amp	Amp_8p11.23	1	1
8q-Amp	Amp_8q22.1	1	1
8q-Amp	Amp_8q24.21	1	1
8q-Amp	Amp_11q13.2	1	1
8q-Amp	Amp_13q12.11	1	1
8q-Amp	Amp_16q11.2	1	1
8q-Amp	Amp_17q23.2	1	1
8q-Amp	Del_4q28.2	1	1
8q-Amp	Del_5q11.2	1	1
8q-Amp	Del_6q14.3	1	1
8q-Amp	Del_8p23.2	1	1
8q-Amp	Del_16q24.1	1	1
9q-Amp	Xq-Del	1	1
9q-Amp	Amp_7p14.3	1	1
9q-Amp	Amp_7q22.1	1	1
9q-Amp	Amp_9q33.3	1	1
9q-Amp	Amp_13q12.11	1	1
9q-Amp	Del_2q22.1	1	1
9q-Amp	Del_4q28.2	1	1
9q-Amp	Del_5q11.2	1	1
9q-Amp	Del_5q13.2	1	1
9q-Amp	Del_13q14.13	1	1
9q-Amp	Del_13q22.1	1	1
10p-Del	6q-Del	1	1
10p-Del	8p-Del	1	1
10p-Del	Del_1q42.3	1	1
10p-Del	Del_4q28.2	1	1
10p-Del	Del_6q14.3	1	1
10p-Del	Del_8p23.2	1	1
10p-Del	Del_8p21.3	1	1
10p-Del	Del_11q22.3	1	1
10p-Del	Del_11q23.2	1	1
10p-Del	Del_12p13.1	1	1
10p-Del	Del_13q14.13	1	1
10p-Del	Del_13q22.1	1	1
10q-Del	18q-Del	1	1
10q-Del	8q-Del	1	1
10q-Del	Amp_Xq21.1	1	1
10q-Del	Del_10q23.31	1	1
10q-Del	Del_18q21.31	1	1
10q-Del	Del_18q23	1	1
12p-Del	8p-Del	1	1
12p-Del	Del_1q42.3	1	1
12p-Del	Del_5q11.2	1	1
12p-Del	Del_5q13.2	1	1
12p-Del	Del_8p23.2	1	1
12p-Del	Del_8p21.3	1	1
12p-Del	Del_12p13.1	1	1
13q-Del	Amp_4q13.3	1	1
13q-Del	Amp_7p14.3	1	1
13q-Del	Amp_7q22.1	1	1
13q-Del	Del_13q14.13	1	1
13q-Del	Del_13q22.1	1	1
16q-Del	18p-Del	1	1
16q-Del	18q-Del	1	1
16q-Del	8p-Del	1	1
16q-Del	Amp_7p14.3	1	1
16q-Del	Amp_7q22.1	1	1
16q-Del	Amp_8q22.1	1	1
16q-Del	Amp_9q33.3	1	1
16q-Del	Del_1p31.3	1	1
16q-Del	Del_2q22.3	1	1
16q-Del	Del_8p23.2	1	1
16q-Del	Del_8p21.3	1	1
16q-Del	Del_11p11.2	1	1
16q-Del	Del_12q24.32	1	1
16q-Del	Del_13q14.13	1	1
16q-Del	Del_16q22.3	1	1
16q-Del	Del_16q24.1	1	1
16q-Del	Del_17p13.1	1	1
16q-Del	Del_18q21.31	1	1
16q-Del	Del_18q23	1	1
17p-Del	18p-Del	1	1
17p-Del	18q-Del	1	1
17p-Del	8q-Del	1	1
17p-Del	Amp_8q22.1	1	1
17p-Del	Amp_16q11.2	1	1
17p-Del	Del_8p23.2	1	1
17p-Del	Del_10q23.31	1	1
17p-Del	Del_12p13.1	1	1
17p-Del	Del_16q24.1	1	1
17p-Del	Del_17p13.1	1	1
17p-Del	Del_18q21.31	1	1
17p-Del	Del_18q23	1	1
17p-Del	Del_21q22.3	1	1
18p-Del	18q-Del	1	1
18p-Del	Del_1q42.3	1	1
18p-Del	Del_5q13.2	1	1
18p-Del	Del_9p23	1	1
18p-Del	Del_16q22.3	1	1
18p-Del	Del_16q24.1	1	1
18p-Del	Del_17p13.1	1	1
18p-Del	Del_18q21.31	1	1
18p-Del	Del_18q23	1	1
18q-Del	Amp_4q13.3	1	1
18q-Del	Del_1p31.3	1	1
18q-Del	Del_5q11.2	1	1
18q-Del	Del_8p23.2	1	1
18q-Del	Del_8p21.3	1	1
18q-Del	Del_9p23	1	1
18q-Del	Del_10q23.31	1	1
18q-Del	Del_15q21.3	1	1
18q-Del	Del_16q22.3	1	1
18q-Del	Del_16q24.1	1	1
18q-Del	Del_17p13.1	1	1
18q-Del	Del_18q21.31	1	1
18q-Del	Del_18q23	1	1
22q-Del	Del_16q22.3	1	1
22q-Del	Del_18q23	1	1
6q-Del	Amp_4q13.3	1	1
6q-Del	Del_1p31.3	1	1
6q-Del	Del_6q14.3	1	1
6q-Del	Del_13q14.13	1	1
6q-Del	Del_13q22.1	1	1
8p-Del	8q-Del	1	1
8p-Del	Amp_20q13.2	1	1
8p-Del	Del_1p31.3	1	1
8p-Del	Del_3p13	1	1
8p-Del	Del_8p23.2	1	1
8p-Del	Del_8p21.3	1	1
8p-Del	Del_12p13.1	1	1
8p-Del	Del_16q22.3	1	1
8p-Del	Del_16q24.1	1	1
8p-Del	Del_17p13.1	1	1
8q-Del	Del_8p23.2	1	1
8q-Del	Del_8p21.3	1	1
8q-Del	Del_9p23	1	1
8q-Del	Del_17p13.1	1	1
Xq-Del	Amp_7p14.3	1	1
Xq-Del	Amp_7q22.1	1	1
Xq-Del	Amp_8q22.1	1	1
Xq-Del	Amp_8q24.21	1	1
Xq-Del	Amp_9q33.3	1	1
Xq-Del	Del_2q22.1	1	1
Xq-Del	Del_4q28.2	1	1
Xq-Del	Del_5q13.2	1	1
Xq-Del	Del_5q21.1	1	1
Xq-Del	Del_6q14.3	1	1
Xq-Del	Del_11p11.2	1	1
Xq-Del	Del_11q22.3	1	1
Xq-Del	Del_13q14.13	1	1
Xq-Del	Del_13q22.1	1	1
Amp_1q22	Amp_4q13.3	1	1
Amp_1q22	Amp_8q24.21	1	1
Amp_1q22	Amp_11q13.2	1	1
Amp_1q22	Amp_14q21.1	1	1
Amp_1q22	Amp_17q23.2	1	1
Amp_3q21.3	Amp_3q26.2	1	1
Amp_3q21.3	Amp_11q13.2	1	1
Amp_3q26.2	Amp_17q23.2	1	1
Amp_4q13.3	Del_5q11.2	1	1
Amp_4q13.3	Del_8p23.2	1	1
Amp_4q13.3	Del_8p21.3	1	1
Amp_4q13.3	Del_13q14.13	1	1
Amp_4q13.3	Del_13q22.1	1	1
Amp_4q13.3	Del_17p13.1	1	1
Amp_4q13.3	Del_18q21.31	1	1
Amp_4q13.3	Del_18q23	1	1
Amp_7p14.3	Amp_7q22.1	1	1
Amp_7p14.3	Amp_8p11.23	1	1
Amp_7p14.3	Amp_9q33.3	1	1
Amp_7p14.3	Amp_11q13.2	1	1
Amp_7p14.3	Amp_13q12.11	1	1
Amp_7p14.3	Amp_Xp21.1	1	1
Amp_7p14.3	Del_2q22.1	1	1
Amp_7p14.3	Del_2q22.3	1	1
Amp_7p14.3	Del_4q28.2	1	1
Amp_7p14.3	Del_5q21.1	1	1
Amp_7p14.3	Del_6q14.3	1	1
Amp_7p14.3	Del_12q24.32	1	1
Amp_7p14.3	Del_13q22.1	1	1
Amp_7q22.1	Amp_8q22.1	1	1
Amp_7q22.1	Amp_9q33.3	1	1
Amp_7q22.1	Amp_11q13.2	1	1
Amp_7q22.1	Amp_13q12.11	1	1
Amp_7q22.1	Amp_17q23.2	1	1
Amp_7q22.1	Del_2q22.1	1	1
Amp_7q22.1	Del_2q22.3	1	1
Amp_7q22.1	Del_4q28.2	1	1
Amp_7q22.1	Del_5q21.1	1	1
Amp_7q22.1	Del_6q14.3	1	1
Amp_7q22.1	Del_11p11.2	1	1
Amp_7q22.1	Del_13q14.13	1	1
Amp_7q22.1	Del_13q22.1	1	1
Amp_8p11.23	Amp_8q22.1	1	1
Amp_8p11.23	Amp_8q24.21	1	1
Amp_8p11.23	Amp_11q13.2	1	1
Amp_8p11.23	Del_2q22.1	1	1
Amp_8p11.23	Del_5q11.2	1	1
Amp_8q22.1	Amp_8q24.21	1	1
Amp_8q22.1	Amp_9q33.3	1	1
Amp_8q22.1	Amp_16q11.2	1	1
Amp_8q22.1	Amp_17q23.2	1	1
Amp_8q22.1	Amp_20q13.2	1	1
Amp_8q22.1	Del_5q11.2	1	1
Amp_8q22.1	Del_8p23.2	1	1
Amp_8q22.1	Del_8p21.3	1	1
Amp_8q22.1	Del_16q22.3	1	1
Amp_8q22.1	Del_16q24.1	1	1
Amp_8q22.1	Del_17p13.1	1	1
Amp_8q24.21	Amp_11q13.2	1	1
Amp_8q24.21	Amp_14q21.1	1	1
Amp_8q24.21	Amp_17q23.2	1	1
Amp_8q24.21	Amp_20q13.2	1	1
Amp_8q24.21	Del_5q11.2	1	1
Amp_8q24.21	Del_8p23.2	1	1
Amp_8q24.21	Del_8p21.3	1	1
Amp_8q24.21	Del_16q22.3	1	1
Amp_8q24.21	Del_16q24.1	1	1
Amp_9q33.3	Amp_13q12.11	1	1
Amp_9q33.3	Amp_17q23.2	1	1
Amp_9q33.3	Amp_Xp22.11	1	1
Amp_9q33.3	Del_5q11.2	1	1
Amp_9q33.3	Del_13q22.1	1	1
Amp_9q33.3	Del_16q22.3	1	1
Amp_9q33.3	Del_18q23	1	1
Amp_9q33.3	Del_19q13.2	1	1
Amp_11q13.2	Amp_14q21.1	1	1
Amp_11q13.2	Amp_17q23.2	1	1
Amp_11q13.2	Del_2q22.1	1	1
Amp_12q23.1	Amp_14q21.1	1	1
Amp_12q23.1	Amp_16q11.2	1	1
Amp_13q12.11	Amp_17q23.2	1	1
Amp_14q21.1	Amp_17q23.2	1	1
Amp_16q11.2	Del_8p23.2	1	1
Amp_16q11.2	Del_8p21.3	1	1
Amp_16q11.2	Del_16q24.1	1	1
Amp_17q23.2	Amp_Xp22.11	1	1
Amp_20q13.2	Del_8p23.2	1	1
Amp_20q13.2	Del_8p21.3	1	1
Amp_Xp22.11	Amp_Xp21.1	1	1
Del_1p31.3	Del_8p23.2	1	1
Del_1p31.3	Del_10q23.31	1	1
Del_1p31.3	Del_13q14.13	1	1
Del_1p31.3	Del_17p13.1	1	1
Del_1p31.3	Del_18q23	1	1
Del_1p31.3	Del_19q13.2	1	1
Del_1p22.1	Del_2q22.1	1	1
Del_1p22.1	Del_18q23	1	1
Del_1q42.3	Del_6q14.3	1	1
Del_1q42.3	Del_10q23.31	1	1
Del_1q42.3	Del_12p13.1	1	1
Del_2q22.1	Del_2q22.3	1	1
Del_2q22.1	Del_4q28.2	1	1
Del_2q22.1	Del_5q21.1	1	1
Del_2q22.1	Del_6p25.1	1	1
Del_2q22.1	Del_6q14.3	1	1
Del_2q22.1	Del_11p11.2	1	1
Del_2q22.1	Del_13q14.13	1	1
Del_2q22.1	Del_13q22.1	1	1
Del_2q22.3	Del_4q28.2	1	1
Del_2q22.3	Del_5q21.1	1	1
Del_2q22.3	Del_6q14.3	1	1
Del_2q22.3	Del_11p11.2	1	1
Del_2q22.3	Del_13q14.13	1	1
Del_3p13	Del_8p21.3	1	1
Del_3p13	Del_21q22.3	1	1
Del_4q28.2	Del_5q21.1	1	1
Del_4q28.2	Del_6q14.3	1	1
Del_4q28.2	Del_13q14.13	1	1
Del_4q28.2	Del_13q22.1	1	1
Del_5q11.2	Del_5q13.2	1	1
Del_5q11.2	Del_5q21.1	1	1
Del_5q11.2	Del_6q14.3	1	1
Del_5q11.2	Del_8p23.2	1	1
Del_5q11.2	Del_8p21.3	1	1
Del_5q11.2	Del_12p13.1	1	1
Del_5q11.2	Del_13q14.13	1	1
Del_5q11.2	Del_18q21.31	1	1
Del_5q13.2	Del_5q21.1	1	1
Del_5q13.2	Del_6q14.3	1	1
Del_5q13.2	Del_8p21.3	1	1
Del_5q13.2	Del_11q22.3	1	1
Del_5q13.2	Del_12p13.1	1	1
Del_5q13.2	Del_16q24.1	1	1
Del_5q21.1	Del_6q14.3	1	1
Del_5q21.1	Del_11p11.2	1	1
Del_5q21.1	Del_13q14.13	1	1
Del_5q21.1	Del_13q22.1	1	1
Del_6q14.3	Del_8p23.2	1	1
Del_6q14.3	Del_8p21.3	1	1
Del_6q14.3	Del_11q22.3	1	1
Del_6q14.3	Del_11q23.2	1	1
Del_6q14.3	Del_12p13.1	1	1
Del_6q14.3	Del_13q14.13	1	1
Del_8p23.2	Del_8p21.3	1	1
Del_8p23.2	Del_10q23.31	1	1
Del_8p23.2	Del_12p13.1	1	1
Del_8p23.2	Del_13q14.13	1	1
Del_8p23.2	Del_16q22.3	1	1
Del_8p23.2	Del_16q24.1	1	1
Del_8p23.2	Del_17p13.1	1	1
Del_8p23.2	Del_18q21.31	1	1
Del_8p23.2	Del_18q23	1	1
Del_8p23.2	Del_21q22.3	1	1
Del_8p21.3	Del_12p13.1	1	1
Del_8p21.3	Del_13q14.13	1	1
Del_8p21.3	Del_16q22.3	1	1
Del_8p21.3	Del_16q24.1	1	1
Del_8p21.3	Del_17p13.1	1	1
Del_8p21.3	Del_18q21.31	1	1
Del_8p21.3	Del_18q23	1	1
Del_8p21.3	Del_21q22.3	1	1
Del_9p23	Del_15q21.3	1	1
Del_9p23	Del_18q21.31	1	1
Del_9p23	Del_18q23	1	1
Del_10q23.31	Del_12p13.1	1	1
Del_10q23.31	Del_17p13.1	1	1
Del_10q23.31	Del_17q21.31	1	1
Del_10q23.31	Del_18q21.31	1	1
Del_10q23.31	Del_18q23	1	1
Del_10q23.31	Del_21q22.3	1	1
Del_11p11.2	Del_11q22.3	1	1
Del_11p11.2	Del_13q14.13	1	1
Del_11p11.2	Del_13q22.1	1	1
Del_11p11.2	Del_16q22.3	1	1
Del_11p11.2	Del_16q24.1	1	1
Del_11q22.3	Del_11q23.2	1	1
Del_11q22.3	Del_12p13.1	1	1
Del_11q22.3	Del_16q22.3	1	1
Del_11q22.3	Del_16q24.1	1	1
Del_11q23.2	Del_13q22.1	1	1
Del_12p13.1	Del_16q22.3	1	1
Del_12p13.1	Del_16q24.1	1	1
Del_12p13.1	Del_17q21.31	1	1
Del_12q24.32	Del_16q22.3	1	1
Del_12q24.32	Del_16q24.1	1	1
Del_13q14.13	Del_13q22.1	1	1
Del_13q14.13	Del_16q22.3	1	1
Del_13q14.13	Del_16q24.1	1	1
Del_13q22.1	Del_21q22.3	1	1
Del_15q21.3	Del_16q22.3	1	1
Del_15q21.3	Del_18q21.31	1	1
Del_16q22.3	Del_16q24.1	1	1
Del_16q22.3	Del_17p13.1	1	1
Del_16q22.3	Del_18q21.31	1	1
Del_16q22.3	Del_18q23	1	1
Del_16q24.1	Del_17p13.1	1	1
Del_16q24.1	Del_18q21.31	1	1
Del_16q24.1	Del_18q23	1	1
Del_16q24.1	Del_21q22.3	1	1
Del_17p13.1	Del_18q21.31	1	1
Del_17p13.1	Del_18q23	1	1
Del_17p13.1	Del_21q22.3	1	1
Del_17q21.31	Del_21q22.3	1	1
Del_18q21.31	Del_18q23	1	1
Del_21q22.2	Del_21q22.3	1	1
