gene1	gene2	pval	qval
CDKN1B	TP53BP1	0.00174	1
BRAF	SMG7	0.0026	1
RPTN	ZNF709	0.0026	1
BRAF	OR4D5	0.00429	1
MED15	RPTN	0.00429	1
FOXA1	TNRC18	0.0111	1
SMAD4	TP53	0.0212	1
CTNNB1	PIK3CA	0.0336	1
KIDINS220	SMAD4	0.0342	1
KIDINS220	EDC4	0.0342	1
SMAD4	EDC4	0.0342	1
CDKN1B	RNF31	0.0602	1
CDKN1B	SMG7	0.0602	1
CDKN1B	ZNF709	0.0602	1
RNF31	SMG7	0.0602	1
RNF31	ZNF709	0.0602	1
SMG7	TNRC18	0.0602	1
SMG7	ZNF709	0.0602	1
LMOD2	KDM6A	0.0676	1
CTNNB1	PTEN	0.0677	1
IDH1	MED15	0.0749	1
NKX3-1	TCEB3	0.0749	1
OR4D5	MLLT10	0.0749	1
CDKN1B	MED15	0.0749	1
MED15	RNF31	0.0749	1
MED15	SMG7	0.0749	1
MED15	ZNF709	0.0749	1
RNF31	TP53BP1	0.0749	1
SMG7	TP53BP1	0.0749	1
TCEB3	TP53BP1	0.0749	1
TP53BP1	ZNF709	0.0749	1
ATM	TP53	0.0778	1
SMAD4	CDK12	0.0786	1
SPOP	CNTNAP1	0.0792	1
BRAF	CDKN1B	0.0893	1
BRAF	MLLT10	0.0893	1
BRAF	RNF31	0.0893	1
BRAF	TNRC18	0.0893	1
BRAF	ZNF709	0.0893	1
IDH1	ZMYM3	0.0893	1
LILRB5	ZNF709	0.0893	1
CDKN1B	RPTN	0.0893	1
CDKN1B	ZMYM3	0.0893	1
RNF31	RPTN	0.0893	1
RNF31	ZMYM3	0.0893	1
RPTN	SMG7	0.0893	1
SMG7	ZMYM3	0.0893	1
ZMYM3	ZNF709	0.0893	1
NTM	OR4D5	0.0929	1
MED15	TP53BP1	0.0929	1
CTNNB1	LMOD2	0.1	1
CTNNB1	SMAD4	0.1	1
SMAD4	PIK3CA	0.1	1
EDC4	PIK3CA	0.1	1
CDK12	RNF31	0.104	1
FOXA1	SPOP	0.105	1
BRAF	MED15	0.111	1
BRAF	TP53BP1	0.111	1
NTM	ZMYM3	0.111	1
OR4D5	ZMYM3	0.111	1
MED15	ZMYM3	0.111	1
RPTN	TP53BP1	0.111	1
TP53BP1	ZMYM3	0.111	1
BRAF	SPOP	0.112	1
FAM47C	MLLT10	0.118	1
FAM47C	SMG7	0.118	1
CDK12	CNTNAP1	0.128	1
BRAF	RPTN	0.131	1
BRAF	ZMYM3	0.131	1
RPTN	ZMYM3	0.131	1
ATM	KIDINS220	0.132	1
ATM	LMOD2	0.132	1
CTNNB1	CDKN1B	0.132	1
PIK3CA	TNRC18	0.132	1
PIK3CA	ZNF709	0.132	1
LMOD2	PTEN	0.143	1
SPOP	CDK12	0.147	1
CDK12	RPTN	0.152	1
FAM47C	RPTN	0.172	1
ATM	CDKN1B	0.173	1
ATM	SMG7	0.173	1
FOXA1	SMG7	0.173	1
CTNNB1	TP53	0.183	1
IDH1	PTEN	0.186	1
PTEN	SMG7	0.186	1
PTEN	TNRC18	0.186	1
CTNNB1	KDM6A	0.192	1
CTNNB1	RPTN	0.192	1
PIK3CA	RPTN	0.192	1
CDK12	FAM47C	0.198	1
FOXA1	OR4D5	0.211	1
FOXA1	CNTNAP1	0.211	1
FOXA1	MED15	0.211	1
KIDINS220	TP53	0.243	1
TP53	EDC4	0.243	1
ATM	LILRB5	0.248	1
FOXA1	LILRB5	0.248	1
FOXA1	RPTN	0.248	1
PTEN	KDM6A	0.266	1
PTEN	ZMYM3	0.266	1
SMAD4	SPOP	0.271	1
ATM	CDK12	0.284	1
FOXA1	CDK12	0.284	1
TP53	MLLT10	0.31	1
TP53	RNF31	0.31	1
TP53	SMG7	0.31	1
TP53	TCEB3	0.31	1
TP53	TNRC18	0.31	1
SPOP	MLLT10	0.344	1
SPOP	TNRC18	0.344	1
CTNNB1	FOXA1	0.35	1
FOXA1	PIK3CA	0.35	1
NTM	TP53	0.372	1
PTEN	PIK3CA	0.373	1
NTM	SPOP	0.411	1
OR4D5	SPOP	0.411	1
SPOP	MED15	0.411	1
SPOP	TP53BP1	0.411	1
BRAF	TP53	0.428	1
LILRB5	TP53	0.428	1
ATM	FOXA1	0.439	1
ATM	PTEN	0.466	1
FOXA1	PTEN	0.466	1
LILRB5	SPOP	0.471	1
SPOP	KDM6A	0.471	1
SPOP	RPTN	0.471	1
TP53	PIK3CA	0.57	1
CTNNB1	SPOP	0.617	1
PTEN	TP53	0.707	1
ATM	SPOP	0.724	1
PTEN	SPOP	0.753	1
SPOP	TP53	0.92	1
ATM	BRAF	1	1
ATM	CTNNB1	1	1
ATM	IDH1	1	1
ATM	NKX3-1	1	1
ATM	NTM	1	1
ATM	OR4D5	1	1
ATM	SMAD4	1	1
ATM	CNTNAP1	1	1
ATM	EDC4	1	1
ATM	FAM47C	1	1
ATM	KDM6A	1	1
ATM	MED15	1	1
ATM	MLLT10	1	1
ATM	PIK3CA	1	1
ATM	RNF31	1	1
ATM	RPTN	1	1
ATM	TCEB3	1	1
ATM	TNRC18	1	1
ATM	TP53BP1	1	1
ATM	ZMYM3	1	1
ATM	ZNF709	1	1
BRAF	CTNNB1	1	1
BRAF	FOXA1	1	1
BRAF	IDH1	1	1
BRAF	KIDINS220	1	1
BRAF	LILRB5	1	1
BRAF	LMOD2	1	1
BRAF	NKX3-1	1	1
BRAF	NTM	1	1
BRAF	PTEN	1	1
BRAF	SMAD4	1	1
BRAF	CDK12	1	1
BRAF	CNTNAP1	1	1
BRAF	EDC4	1	1
BRAF	FAM47C	1	1
BRAF	KDM6A	1	1
BRAF	PIK3CA	1	1
BRAF	TCEB3	1	1
CTNNB1	IDH1	1	1
CTNNB1	KIDINS220	1	1
CTNNB1	LILRB5	1	1
CTNNB1	NKX3-1	1	1
CTNNB1	NTM	1	1
CTNNB1	OR4D5	1	1
CTNNB1	CDK12	1	1
CTNNB1	CNTNAP1	1	1
CTNNB1	EDC4	1	1
CTNNB1	FAM47C	1	1
CTNNB1	MED15	1	1
CTNNB1	MLLT10	1	1
CTNNB1	RNF31	1	1
CTNNB1	SMG7	1	1
CTNNB1	TCEB3	1	1
CTNNB1	TNRC18	1	1
CTNNB1	TP53BP1	1	1
CTNNB1	ZMYM3	1	1
CTNNB1	ZNF709	1	1
FOXA1	IDH1	1	1
FOXA1	KIDINS220	1	1
FOXA1	LMOD2	1	1
FOXA1	NKX3-1	1	1
FOXA1	NTM	1	1
FOXA1	SMAD4	1	1
FOXA1	TP53	1	1
FOXA1	CDKN1B	1	1
FOXA1	EDC4	1	1
FOXA1	FAM47C	1	1
FOXA1	KDM6A	1	1
FOXA1	MLLT10	1	1
FOXA1	RNF31	1	1
FOXA1	TCEB3	1	1
FOXA1	TP53BP1	1	1
FOXA1	ZMYM3	1	1
FOXA1	ZNF709	1	1
IDH1	KIDINS220	1	1
IDH1	LILRB5	1	1
IDH1	LMOD2	1	1
IDH1	NKX3-1	1	1
IDH1	NTM	1	1
IDH1	OR4D5	1	1
IDH1	SMAD4	1	1
IDH1	SPOP	1	1
IDH1	TP53	1	1
IDH1	CDKN1B	1	1
IDH1	CDK12	1	1
IDH1	CNTNAP1	1	1
IDH1	EDC4	1	1
IDH1	FAM47C	1	1
IDH1	KDM6A	1	1
IDH1	MLLT10	1	1
IDH1	PIK3CA	1	1
IDH1	RNF31	1	1
IDH1	RPTN	1	1
IDH1	SMG7	1	1
IDH1	TCEB3	1	1
IDH1	TNRC18	1	1
IDH1	TP53BP1	1	1
IDH1	ZNF709	1	1
KIDINS220	LILRB5	1	1
KIDINS220	LMOD2	1	1
KIDINS220	NKX3-1	1	1
KIDINS220	NTM	1	1
KIDINS220	OR4D5	1	1
KIDINS220	PTEN	1	1
KIDINS220	SPOP	1	1
KIDINS220	CDKN1B	1	1
KIDINS220	CDK12	1	1
KIDINS220	CNTNAP1	1	1
KIDINS220	FAM47C	1	1
KIDINS220	KDM6A	1	1
KIDINS220	MED15	1	1
KIDINS220	MLLT10	1	1
KIDINS220	PIK3CA	1	1
KIDINS220	RNF31	1	1
KIDINS220	RPTN	1	1
KIDINS220	SMG7	1	1
KIDINS220	TCEB3	1	1
KIDINS220	TNRC18	1	1
KIDINS220	TP53BP1	1	1
KIDINS220	ZMYM3	1	1
KIDINS220	ZNF709	1	1
LILRB5	LMOD2	1	1
LILRB5	NKX3-1	1	1
LILRB5	NTM	1	1
LILRB5	OR4D5	1	1
LILRB5	PTEN	1	1
LILRB5	SMAD4	1	1
LILRB5	CDKN1B	1	1
LILRB5	CDK12	1	1
LILRB5	CNTNAP1	1	1
LILRB5	EDC4	1	1
LILRB5	FAM47C	1	1
LILRB5	KDM6A	1	1
LILRB5	MED15	1	1
LILRB5	MLLT10	1	1
LILRB5	PIK3CA	1	1
LILRB5	RNF31	1	1
LILRB5	RPTN	1	1
LILRB5	SMG7	1	1
LILRB5	TCEB3	1	1
LILRB5	TNRC18	1	1
LILRB5	TP53BP1	1	1
LILRB5	ZMYM3	1	1
LMOD2	NKX3-1	1	1
LMOD2	NTM	1	1
LMOD2	OR4D5	1	1
LMOD2	SMAD4	1	1
LMOD2	SPOP	1	1
LMOD2	TP53	1	1
LMOD2	CDKN1B	1	1
LMOD2	CDK12	1	1
LMOD2	CNTNAP1	1	1
LMOD2	EDC4	1	1
LMOD2	FAM47C	1	1
LMOD2	MED15	1	1
LMOD2	MLLT10	1	1
LMOD2	PIK3CA	1	1
LMOD2	RNF31	1	1
LMOD2	RPTN	1	1
LMOD2	SMG7	1	1
LMOD2	TCEB3	1	1
LMOD2	TNRC18	1	1
LMOD2	TP53BP1	1	1
LMOD2	ZMYM3	1	1
LMOD2	ZNF709	1	1
NKX3-1	NTM	1	1
NKX3-1	OR4D5	1	1
NKX3-1	PTEN	1	1
NKX3-1	SMAD4	1	1
NKX3-1	SPOP	1	1
NKX3-1	TP53	1	1
NKX3-1	CDKN1B	1	1
NKX3-1	CDK12	1	1
NKX3-1	CNTNAP1	1	1
NKX3-1	EDC4	1	1
NKX3-1	FAM47C	1	1
NKX3-1	KDM6A	1	1
NKX3-1	MED15	1	1
NKX3-1	MLLT10	1	1
NKX3-1	PIK3CA	1	1
NKX3-1	RNF31	1	1
NKX3-1	RPTN	1	1
NKX3-1	SMG7	1	1
NKX3-1	TNRC18	1	1
NKX3-1	TP53BP1	1	1
NKX3-1	ZMYM3	1	1
NKX3-1	ZNF709	1	1
NTM	PTEN	1	1
NTM	SMAD4	1	1
NTM	CDKN1B	1	1
NTM	CDK12	1	1
NTM	CNTNAP1	1	1
NTM	EDC4	1	1
NTM	FAM47C	1	1
NTM	KDM6A	1	1
NTM	MED15	1	1
NTM	MLLT10	1	1
NTM	PIK3CA	1	1
NTM	RNF31	1	1
NTM	RPTN	1	1
NTM	SMG7	1	1
NTM	TCEB3	1	1
NTM	TNRC18	1	1
NTM	TP53BP1	1	1
NTM	ZNF709	1	1
OR4D5	PTEN	1	1
OR4D5	SMAD4	1	1
OR4D5	TP53	1	1
OR4D5	CDKN1B	1	1
OR4D5	CDK12	1	1
OR4D5	CNTNAP1	1	1
OR4D5	EDC4	1	1
OR4D5	FAM47C	1	1
OR4D5	KDM6A	1	1
OR4D5	MED15	1	1
OR4D5	PIK3CA	1	1
OR4D5	RNF31	1	1
OR4D5	RPTN	1	1
OR4D5	SMG7	1	1
OR4D5	TCEB3	1	1
OR4D5	TNRC18	1	1
OR4D5	TP53BP1	1	1
OR4D5	ZNF709	1	1
PTEN	SMAD4	1	1
PTEN	CDKN1B	1	1
PTEN	CDK12	1	1
PTEN	CNTNAP1	1	1
PTEN	EDC4	1	1
PTEN	FAM47C	1	1
PTEN	MED15	1	1
PTEN	MLLT10	1	1
PTEN	RNF31	1	1
PTEN	RPTN	1	1
PTEN	TCEB3	1	1
PTEN	TP53BP1	1	1
PTEN	ZNF709	1	1
SMAD4	CDKN1B	1	1
SMAD4	CNTNAP1	1	1
SMAD4	FAM47C	1	1
SMAD4	KDM6A	1	1
SMAD4	MED15	1	1
SMAD4	MLLT10	1	1
SMAD4	RNF31	1	1
SMAD4	RPTN	1	1
SMAD4	SMG7	1	1
SMAD4	TCEB3	1	1
SMAD4	TNRC18	1	1
SMAD4	TP53BP1	1	1
SMAD4	ZMYM3	1	1
SMAD4	ZNF709	1	1
SPOP	CDKN1B	1	1
SPOP	EDC4	1	1
SPOP	FAM47C	1	1
SPOP	PIK3CA	1	1
SPOP	RNF31	1	1
SPOP	SMG7	1	1
SPOP	TCEB3	1	1
SPOP	ZMYM3	1	1
SPOP	ZNF709	1	1
TP53	CDKN1B	1	1
TP53	CDK12	1	1
TP53	CNTNAP1	1	1
TP53	FAM47C	1	1
TP53	KDM6A	1	1
TP53	MED15	1	1
TP53	RPTN	1	1
TP53	TP53BP1	1	1
TP53	ZMYM3	1	1
TP53	ZNF709	1	1
CDKN1B	CDK12	1	1
CDKN1B	CNTNAP1	1	1
CDKN1B	EDC4	1	1
CDKN1B	FAM47C	1	1
CDKN1B	KDM6A	1	1
CDKN1B	MLLT10	1	1
CDKN1B	PIK3CA	1	1
CDKN1B	TCEB3	1	1
CDKN1B	TNRC18	1	1
CDK12	EDC4	1	1
CDK12	KDM6A	1	1
CDK12	MED15	1	1
CDK12	MLLT10	1	1
CDK12	PIK3CA	1	1
CDK12	SMG7	1	1
CDK12	TCEB3	1	1
CDK12	TNRC18	1	1
CDK12	TP53BP1	1	1
CDK12	ZMYM3	1	1
CDK12	ZNF709	1	1
CNTNAP1	EDC4	1	1
CNTNAP1	FAM47C	1	1
CNTNAP1	KDM6A	1	1
CNTNAP1	MED15	1	1
CNTNAP1	MLLT10	1	1
CNTNAP1	PIK3CA	1	1
CNTNAP1	RNF31	1	1
CNTNAP1	RPTN	1	1
CNTNAP1	SMG7	1	1
CNTNAP1	TCEB3	1	1
CNTNAP1	TNRC18	1	1
CNTNAP1	TP53BP1	1	1
CNTNAP1	ZMYM3	1	1
CNTNAP1	ZNF709	1	1
EDC4	FAM47C	1	1
EDC4	KDM6A	1	1
EDC4	MED15	1	1
EDC4	MLLT10	1	1
EDC4	RNF31	1	1
EDC4	RPTN	1	1
EDC4	SMG7	1	1
EDC4	TCEB3	1	1
EDC4	TNRC18	1	1
EDC4	TP53BP1	1	1
EDC4	ZMYM3	1	1
EDC4	ZNF709	1	1
FAM47C	KDM6A	1	1
FAM47C	MED15	1	1
FAM47C	PIK3CA	1	1
FAM47C	RNF31	1	1
FAM47C	TCEB3	1	1
FAM47C	TNRC18	1	1
FAM47C	TP53BP1	1	1
FAM47C	ZMYM3	1	1
FAM47C	ZNF709	1	1
KDM6A	MED15	1	1
KDM6A	MLLT10	1	1
KDM6A	PIK3CA	1	1
KDM6A	RNF31	1	1
KDM6A	RPTN	1	1
KDM6A	SMG7	1	1
KDM6A	TCEB3	1	1
KDM6A	TNRC18	1	1
KDM6A	TP53BP1	1	1
KDM6A	ZMYM3	1	1
KDM6A	ZNF709	1	1
MED15	MLLT10	1	1
MED15	PIK3CA	1	1
MED15	TCEB3	1	1
MED15	TNRC18	1	1
MLLT10	PIK3CA	1	1
MLLT10	RNF31	1	1
MLLT10	RPTN	1	1
MLLT10	SMG7	1	1
MLLT10	TCEB3	1	1
MLLT10	TNRC18	1	1
MLLT10	TP53BP1	1	1
MLLT10	ZMYM3	1	1
MLLT10	ZNF709	1	1
PIK3CA	RNF31	1	1
PIK3CA	SMG7	1	1
PIK3CA	TCEB3	1	1
PIK3CA	TP53BP1	1	1
PIK3CA	ZMYM3	1	1
RNF31	TCEB3	1	1
RNF31	TNRC18	1	1
RPTN	TCEB3	1	1
RPTN	TNRC18	1	1
SMG7	TCEB3	1	1
TCEB3	TNRC18	1	1
TCEB3	ZMYM3	1	1
TCEB3	ZNF709	1	1
TNRC18	TP53BP1	1	1
TNRC18	ZMYM3	1	1
TNRC18	ZNF709	1	1
