[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
                          Clinical feature           
AGE                       "AGE"                      
AGE_mutation.rate         "AGE_mutation rate"        
PATHOLOGY.T.STAGE         "PATHOLOGY T STAGE"        
PATHOLOGY.N.STAGE         "PATHOLOGY N STAGE"        
HISTOLOGICAL.TYPE         "HISTOLOGICAL TYPE"        
COMPLETENESS.OF.RESECTION "COMPLETENESS OF RESECTION"
NUMBER.OF.LYMPH.NODES     "NUMBER OF LYMPH NODES"    
GLEASON_SCORE_COMBINED    "GLEASON_SCORE_COMBINED"   
GLEASON_SCORE_PRIMARY     "GLEASON_SCORE_PRIMARY"    
GLEASON_SCORE_SECONDARY   "GLEASON_SCORE_SECONDARY"  
GLEASON_SCORE             "GLEASON_SCORE"            
PSA_RESULT_PREOP          "PSA_RESULT_PREOP"         
PSA_VALUE                 "PSA_VALUE"                
RACE                      "RACE"                     
                          Statistical test             Significant variables
AGE                       "Spearman correlation test"  "N=2"                
AGE_mutation.rate         "Linear Regression Analysis" "N=0"                
PATHOLOGY.T.STAGE         "Spearman correlation test"  "N=1"                
PATHOLOGY.N.STAGE         "Wilcoxon test"              "N=0"                
HISTOLOGICAL.TYPE         "Wilcoxon test"              "N=1"                
COMPLETENESS.OF.RESECTION "Kruskal-Wallis test"        "N=0"                
NUMBER.OF.LYMPH.NODES     "Spearman correlation test"  "N=0"                
GLEASON_SCORE_COMBINED    "Spearman correlation test"  "N=2"                
GLEASON_SCORE_PRIMARY     "Spearman correlation test"  "N=2"                
GLEASON_SCORE_SECONDARY   "Spearman correlation test"  "N=0"                
GLEASON_SCORE             "Spearman correlation test"  "N=2"                
PSA_RESULT_PREOP          "Spearman correlation test"  "N=2"                
PSA_VALUE                 "Spearman correlation test"  "N=2"                
RACE                      "Kruskal-Wallis test"        "N=0"                
                          Associated with                      
AGE                       "older"                              
AGE_mutation.rate         " "                                  
PATHOLOGY.T.STAGE         "higher stage"                       
PATHOLOGY.N.STAGE         " "                                  
HISTOLOGICAL.TYPE         "prostate adenocarcinoma acinar type"
COMPLETENESS.OF.RESECTION " "                                  
NUMBER.OF.LYMPH.NODES     " "                                  
GLEASON_SCORE_COMBINED    "higher score"                       
GLEASON_SCORE_PRIMARY     "higher score"                       
GLEASON_SCORE_SECONDARY   " "                                  
GLEASON_SCORE             "higher score"                       
PSA_RESULT_PREOP          "higher psa_result_preop"            
PSA_VALUE                 "higher psa_value"                   
RACE                      " "                                  
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
AGE                       "N=2"                                                                                     
AGE_mutation.rate         " "                                                                                       
PATHOLOGY.T.STAGE         "N=1"                                                                                     
PATHOLOGY.N.STAGE         " "                                                                                       
HISTOLOGICAL.TYPE         "N=1"                                                                                     
COMPLETENESS.OF.RESECTION " "                                                                                       
NUMBER.OF.LYMPH.NODES     " "                                                                                       
GLEASON_SCORE_COMBINED    "N=2"                                                                                     
GLEASON_SCORE_PRIMARY     "N=2"                                                                                     
GLEASON_SCORE_SECONDARY   " "                                                                                       
GLEASON_SCORE             "N=2"                                                                                     
PSA_RESULT_PREOP          "N=2"                                                                                     
PSA_VALUE                 "N=2"                                                                                     
RACE                      " "                                                                                       
                          Associated with                               
AGE                       "younger"                                "N=0"
AGE_mutation.rate         " "                                      " "  
PATHOLOGY.T.STAGE         "lower stage"                            "N=0"
PATHOLOGY.N.STAGE         " "                                      " "  
HISTOLOGICAL.TYPE         "prostate adenocarcinoma  other subtype" "N=0"
COMPLETENESS.OF.RESECTION " "                                      " "  
NUMBER.OF.LYMPH.NODES     " "                                      " "  
GLEASON_SCORE_COMBINED    "lower score"                            "N=0"
GLEASON_SCORE_PRIMARY     "lower score"                            "N=0"
GLEASON_SCORE_SECONDARY   " "                                      " "  
GLEASON_SCORE             "lower score"                            "N=0"
PSA_RESULT_PREOP          "lower psa_result_preop"                 "N=0"
PSA_VALUE                 "lower psa_value"                        "N=0"
RACE                      " "                                      " "  
