		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	40 (8%)	452	9.9999e-06	0.00648	0.00044	0.2	0.00162	0.674	0.02075	1	0.00098999	0.431	0.00176	0.723	0.0129	1	4e-04	0.183	0.03943	1	0.01912	1
amp_3q21.3	75 (15%)	417	9.9999e-06	0.00648	6.9999e-05	0.0349	0.17356	1	0.20082	1	0.00311	1	0.0057399	1	0.0173	1	0.00041	0.187	0.0093099	1	0.00025	0.117
amp_3q26.2	86 (17%)	406	9.9999e-06	0.00648	0.092889	1	0.15093	1	0.39819	1	0.01307	1	0.051229	1	0.082109	1	0.0077899	1	0.0074199	1	2e-05	0.0105
amp_4p16.3	20 (4%)	472	9.9999e-06	0.00648	0.03936	1	0.50726	1	0.28435	1	0.01597	1	0.076699	1	0.40797	1	0.073169	1	0.74588	1	0.58441	1
amp_4q13.3	22 (4%)	470	9.9999e-06	0.00648	0.38992	1	0.4707	1	0.78087	1	0.2012	1	0.25499	1	0.02693	1	0.066549	1	0.03635	1	0.16423	1
amp_5q35.3	28 (6%)	464	9.9999e-06	0.00648	0.02355	1	0.11109	1	0.19324	1	0.067229	1	0.070219	1	0.18344	1	0.00091999	0.402	0.01675	1	0.29625	1
amp_7p14.3	104 (21%)	388	9.9999e-06	0.00648	9.9999e-06	0.00648	0.35532	1	0.56426	1	9.9999e-06	0.00648	0.00039	0.179	0.00363	1	0.00058999	0.263	0.00111	0.476	0.0087599	1
amp_7q22.1	101 (21%)	391	9.9999e-06	0.00648	9.9999e-06	0.00648	0.4089	1	0.58322	1	9.9999e-06	0.00648	8.9999e-05	0.0441	0.0058199	1	9.9999e-06	0.00648	0.00045	0.203	0.00363	1
amp_8p11.23	67 (14%)	425	9.9999e-06	0.00648	9.9999e-06	0.00648	0.096709	1	0.16197	1	7.9999e-05	0.0395	0.01898	1	0.046	1	0.0013	0.549	9.9999e-06	0.00648	0.00053999	0.242
amp_8q22.1	157 (32%)	335	9.9999e-06	0.00648	9.9999e-06	0.00648	0.0061799	1	0.0066099	1	8.9999e-05	0.0441	0.01728	1	3e-05	0.0153	9.9999e-06	0.00648	9.9999e-06	0.00648	6.9999e-05	0.0349
amp_8q24.21	152 (31%)	340	9.9999e-06	0.00648	9.9999e-06	0.00648	0.0061699	1	0.0064999	1	2e-05	0.0105	0.00118	0.503	9.9999e-06	0.00648	9.9999e-06	0.00648	9.9999e-06	0.00648	0.00044	0.2
amp_9q33.3	62 (13%)	430	9.9999e-06	0.00648	0.00252	1	0.057239	1	0.04304	1	0.00386	1	0.00219	0.88	0.01884	1	0.00095999	0.419	0.0168	1	0.0084199	1
amp_11q13.2	48 (10%)	444	9.9999e-06	0.00648	0.02667	1	0.52193	1	0.52421	1	0.02828	1	0.00075999	0.337	0.03213	1	0.00018	0.0855	0.0071299	1	0.02959	1
amp_12q23.1	36 (7%)	456	2e-05	0.0105	7.9999e-05	0.0395	0.057089	1	0.11062	1	0.16081	1	0.02041	1	0.65043	1	0.00214	0.867	0.28841	1	0.1237	1
amp_13q12.11	25 (5%)	467	9.9999e-06	0.00648	0.01287	1	0.04259	1	0.03326	1	0.0065699	1	0.12544	1	0.01463	1	0.03226	1	0.067019	1	0.073909	1
amp_14q21.1	30 (6%)	462	9.9999e-06	0.00648	0.12677	1	0.16719	1	0.17956	1	0.093469	1	0.055369	1	0.0081499	1	0.01076	1	0.067829	1	0.02877	1
amp_15q11.2	16 (3%)	476	0.0096499	1	0.068699	1	0.78485	1	0.78065	1	0.94819	1	0.56295	1	0.13257	1	0.68477	1	0.53207	1	0.15434	1
amp_16q11.2	30 (6%)	462	9.9999e-06	0.00648	0.00090999	0.399	1	1	1	1	0.17881	1	0.01518	1	0.0017	0.704	0.00109	0.469	0.081619	1	0.24225	1
amp_17q23.2	25 (5%)	467	9.9999e-06	0.00648	0.00299	1	1	1	0.32139	1	0.082839	1	0.21828	1	0.5209	1	0.01407	1	0.37875	1	0.089939	1
amp_19q13.43	19 (4%)	473	9.9999e-06	0.00648	0.13439	1	0.44951	1	0.3864	1	0.17999	1	0.16626	1	0.0063099	1	0.00139	0.584	0.15227	1	0.0118	1
amp_20q13.2	45 (9%)	447	9.9999e-06	0.00648	2e-05	0.0105	0.30511	1	0.32735	1	0.0127	1	0.01347	1	0.00044	0.2	5.9999e-05	0.03	0.16018	1	6.9999e-05	0.0349
amp_xp22.11	26 (5%)	466	9.9999e-06	0.00648	0.23612	1	NA	NA	NA	NA	0.093889	1	0.097239	1	0.01545	1	0.0050799	1	0.04496	1	0.31127	1
amp_xp22.11	25 (5%)	467	2e-05	0.0105	0.25279	1	0.093809	1	0.18638	1	0.03881	1	0.01152	1	0.0078999	1	0.0098599	1	0.04644	1	0.23448	1
amp_xp21.1	23 (5%)	469	2e-05	0.0105	0.0073199	1	0.85006	1	0.73605	1	0.067199	1	0.068239	1	0.02015	1	0.0091399	1	0.0052499	1	0.14641	1
amp_xq21.1	16 (3%)	476	0.00088999	0.391	0.18157	1	0.48427	1	0.64088	1	0.01147	1	0.065659	1	0.31258	1	0.45418	1	0.45032	1	0.39292	1
amp_xq21.1	14 (3%)	478	0.00252	1	0.18412	1	0.44863	1	1	1	0.082649	1	0.0118	1	0.052129	1	0.23616	1	0.30103	1	0.77723	1
amp_xq25	19 (4%)	473	0.00263	1	0.00325	1	1	1	0.87844	1	0.13825	1	0.02524	1	0.20348	1	0.15142	1	0.72953	1	0.14281	1
amp_xq27.1	19 (4%)	473	0.00424	1	0.070639	1	0.41837	1	0.21693	1	0.13129	1	0.26251	1	0.00103	0.446	0.00013	0.0628	0.03599	1	0.12563	1
del_1p31.3	60 (12%)	432	9.9999e-06	0.00648	9.9999e-06	0.00648	0.33645	1	0.52792	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.00181	0.738	0.16633	1	0.0055099	1	0.00124	0.525
del_1p22.1	58 (12%)	434	9.9999e-06	0.00648	7.9999e-05	0.0395	0.23023	1	0.093319	1	0.00336	1	0.03504	1	0.0079399	1	0.00308	1	0.01014	1	0.0072199	1
del_1q23.1	28 (6%)	464	0.0050199	1	0.00082999	0.366	0.24082	1	0.28612	1	0.00131	0.552	0.03402	1	0.04486	1	0.053599	1	0.02031	1	0.18794	1
del_1q42.3	47 (10%)	445	0.00108	0.465	6.9999e-05	0.0349	0.93283	1	0.10606	1	0.10673	1	0.45611	1	0.11071	1	0.03199	1	0.6977	1	0.04725	1
del_2p21	46 (9%)	446	9.9999e-06	0.00648	0.00022	0.103	0.14354	1	0.5816	1	2e-04	0.0948	0.0097499	1	0.00065999	0.294	0.072489	1	0.03321	1	0.01452	1
del_2q22.1	92 (19%)	400	9.9999e-06	0.00648	9.9999e-06	0.00648	0.02467	1	0.062739	1	9.9999e-06	0.00648	0.00027	0.125	2e-05	0.0105	9.9999e-06	0.00648	0.00173	0.714	0.00115	0.491
del_2q22.3	85 (17%)	407	9.9999e-06	0.00648	9.9999e-06	0.00648	0.24447	1	0.086679	1	4e-05	0.0202	0.0018	0.738	0.00026	0.121	9.9999e-06	0.00648	0.01311	1	2e-04	0.0948
del_3p13	78 (16%)	414	5e-04	0.224	9.9999e-06	0.00648	0.83994	1	0.91939	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.29267	1	0.064339	1	0.02932	1	0.16835	1
del_3q29	32 (7%)	460	0.61178	1	0.20741	1	0.72807	1	0.13718	1	0.063819	1	0.00334	1	0.31234	1	0.25191	1	0.11928	1	0.60058	1
del_4q28.2	51 (10%)	441	9.9999e-06	0.00648	9.9999e-06	0.00648	0.090539	1	0.097449	1	2e-05	0.0105	0.03584	1	0.092099	1	0.0151	1	0.00105	0.454	0.02459	1
del_5q11.2	100 (20%)	392	9.9999e-06	0.00648	9.9999e-06	0.00648	0.00441	1	0.0314	1	0.0062099	1	0.00371	1	9.9999e-05	0.0488	9.9999e-06	0.00648	0.00113	0.484	0.00021	0.0989
del_5q13.2	99 (20%)	393	9.9999e-06	0.00648	4e-05	0.0202	0.02122	1	0.18286	1	0.0156	1	0.14415	1	0.00025	0.117	9.9999e-06	0.00648	0.00214	0.867	0.00027	0.125
del_5q21.1	109 (22%)	383	9.9999e-06	0.00648	9.9999e-06	0.00648	0.11985	1	0.096069	1	9.9999e-06	0.00648	2e-05	0.0105	0.00029	0.134	0.00295	1	0.099919	1	0.00483	1
del_6p25.1	46 (9%)	446	9.9999e-06	0.00648	0.01196	1	0.69638	1	0.93239	1	0.0080299	1	0.00158	0.659	0.14814	1	0.04912	1	0.38737	1	0.01654	1
del_6q14.3	180 (37%)	312	9.9999e-06	0.00648	9.9999e-06	0.00648	0.0074699	1	0.00242	0.97	9.9999e-06	0.00648	9.9999e-06	0.00648	9.9999e-06	0.00648	5e-05	0.0251	0.0018	0.738	0.00493	1
del_7q31.33	28 (6%)	464	0.00014	0.0672	0.03608	1	0.0281	1	0.0145	1	0.00013	0.0628	0.061949	1	0.00099999	0.434	0.00021	0.0989	0.75193	1	0.04787	1
del_8p23.2	224 (46%)	268	9.9999e-06	0.00648	9.9999e-06	0.00648	0.0061199	1	0.050979	1	9.9999e-06	0.00648	0.00011	0.0535	2e-04	0.0948	0.00041	0.187	0.0348	1	0.00146	0.612
del_8p21.3	294 (60%)	198	9.9999e-06	0.00648	9.9999e-06	0.00648	0.03092	1	0.051079	1	9.9999e-06	0.00648	2e-05	0.0105	3e-05	0.0153	9.9999e-06	0.00648	0.0091999	1	9.9999e-06	0.00648
del_9p23	45 (9%)	447	9.9999e-06	0.00648	0.086119	1	0.00331	1	0.03045	1	0.00016	0.0765	0.01227	1	0.02715	1	0.081529	1	0.075499	1	0.01662	1
del_10q23.31	157 (32%)	335	9.9999e-06	0.00648	9.9999e-06	0.00648	0.066749	1	0.14249	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.01407	1	9.9999e-06	0.00648	0.03912	1	9.9999e-06	0.00648
del_11p11.2	34 (7%)	458	9.9999e-06	0.00648	0.060259	1	0.04105	1	0.33909	1	0.00045	0.203	0.086569	1	0.03056	1	0.02397	1	0.0078899	1	0.475	1
del_11q22.3	43 (9%)	449	0.04353	1	0.01005	1	0.16344	1	0.37785	1	0.2928	1	0.03454	1	0.86235	1	0.78083	1	0.15645	1	0.01229	1
del_11q23.2	48 (10%)	444	0.13272	1	0.19232	1	0.2341	1	0.15897	1	0.81049	1	0.89331	1	0.23263	1	0.46491	1	0.30388	1	0.25868	1
del_12p13.1	124 (25%)	368	9.9999e-06	0.00648	3e-05	0.0153	0.059429	1	0.079559	1	0.00083999	0.37	0.00364	1	0.063249	1	3e-05	0.0153	6.9999e-05	0.0349	0.00295	1
del_12q24.32	43 (9%)	449	5e-05	0.0251	0.3126	1	1	1	0.82907	1	0.21491	1	0.19398	1	0.63003	1	0.54943	1	0.39199	1	0.072879	1
del_13q14.13	227 (46%)	265	9.9999e-06	0.00648	9.9999e-06	0.00648	0.077449	1	0.22269	1	2e-05	0.0105	0.00267	1	0.00011	0.0535	4e-04	0.183	0.00016	0.0765	7.9999e-05	0.0395
del_13q22.1	176 (36%)	316	9.9999e-06	0.00648	0.00065999	0.294	0.0089199	1	0.03987	1	4e-05	0.0202	0.00254	1	0.00497	1	0.00123	0.523	0.00175	0.721	0.00011	0.0535
del_15q21.3	67 (14%)	425	9.9999e-06	0.00648	9.9999e-05	0.0488	0.00194	0.788	0.0069099	1	9.9999e-06	0.00648	0.00016	0.0765	9.9999e-06	0.00648	5e-05	0.0251	0.00013	0.0628	9.9999e-06	0.00648
del_16q22.3	191 (39%)	301	9.9999e-06	0.00648	9.9999e-06	0.00648	0.42277	1	0.21795	1	9.9999e-06	0.00648	9.9999e-06	0.00648	3e-05	0.0153	9.9999e-06	0.00648	9.9999e-06	0.00648	9.9999e-06	0.00648
del_16q24.1	213 (43%)	279	9.9999e-06	0.00648	9.9999e-06	0.00648	0.67935	1	0.49517	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.00028	0.129	9.9999e-06	0.00648	0.00262	1	9.9999e-06	0.00648
del_17p13.1	163 (33%)	329	9.9999e-06	0.00648	9.9999e-06	0.00648	0.03208	1	0.04915	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.00015	0.0718	9.9999e-06	0.00648	0.00151	0.631	9.9999e-06	0.00648
del_17q21.31	96 (20%)	396	9.9999e-06	0.00648	9.9999e-06	0.00648	0.52317	1	0.7488	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.55499	1	0.054339	1	0.17126	1	0.31278	1
del_18q21.31	131 (27%)	361	9.9999e-06	0.00648	0.00191	0.777	0.28601	1	0.21771	1	0.00162	0.674	0.067279	1	0.00021	0.0989	0.01782	1	0.0035	1	9.9999e-06	0.00648
del_18q23	137 (28%)	355	9.9999e-06	0.00648	0.01598	1	0.92022	1	0.3075	1	0.00031	0.143	0.02252	1	0.01102	1	0.0072899	1	0.0093399	1	9.9999e-06	0.00648
del_19q13.2	52 (11%)	440	9.9999e-06	0.00648	0.072279	1	0.35467	1	0.35793	1	0.0051499	1	0.04398	1	0.00274	1	0.00075999	0.337	0.00218	0.879	0.00123	0.523
del_21q22.2	52 (11%)	440	0.00055999	0.25	0.00351	1	0.41981	1	0.76533	1	2e-05	0.0105	9.9999e-06	0.00648	0.16531	1	0.0406	1	0.83315	1	0.00322	1
del_21q22.3	147 (30%)	345	9.9999e-06	0.00648	9.9999e-06	0.00648	0.078059	1	0.36748	1	9.9999e-06	0.00648	9.9999e-06	0.00648	0.03214	1	2e-05	0.0105	0.76994	1	9.9999e-06	0.00648
