Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_all_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_all.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_all_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_List_of_inputs.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz2.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz3.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz5.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz4.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01i_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01a.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04c_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01g.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04a_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04a_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01f_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01f.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04h_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04i_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04b.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04f_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04c_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum10c_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04h.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04b_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_non_clusters.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04h_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_G_C_clusters.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_APOBECenrich_ClustSize.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01c_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01f_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04f_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01a_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04i_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01i_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04b_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01b_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01i.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04a.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_scattered.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04g_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01h_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_clusters_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04g_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04c.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01b.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04g.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01b_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum10c.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01h.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_scattered_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum10c_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04i.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01c_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_clusters_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_non_clusters_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01g_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01g_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01h_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_non_clusters_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_G_C_clusters_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_clusters.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01a_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01c.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_scattered_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_G_C_clusters_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04f.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph5.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph8.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph4.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph1.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph6.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph2.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph9.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph3.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph7.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Readme_columns_in_sum_files.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Readme_columns_in_anz_MAF_files.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Readme_content_of_files.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_preprocess:maffile	PRAD-TP.final_analysis_set.maf	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_all_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_all.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_all_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_List_of_inputs.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz2.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz3.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz5.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_anz4.txt	Mutations-APOBEC_Signature	Level_4	maf	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01i_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01a.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04c_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01g.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04a_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04a_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01f_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01f.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04h_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04i_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04b.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04f_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04c_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum10c_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04h.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04b_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_non_clusters.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04h_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_G_C_clusters.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_APOBECenrich_ClustSize.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01c_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01f_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04f_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01a_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04i_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01i_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04b_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01b_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01i.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04a.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_scattered.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04g_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01h_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_clusters_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04g_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04c.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01b.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04g.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01b_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum10c.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01h.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_scattered_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum10c_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04i.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01c_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_clusters_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_non_clusters_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01g_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01g_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01h_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_non_clusters_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_G_C_clusters_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_clusters.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01a_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum01c.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_scattered_fisher.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum_G_C_clusters_fisher_Pcorr.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_sum04f.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph5.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph8.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph4.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph1.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph6.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph2.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph9.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph3.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Mutsig_maf_modified.maf_sorted_graph7.png	Mutations-APOBEC_Signature	Level_4	png	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Readme_columns_in_sum_files.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Readme_columns_in_anz_MAF_files.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	Readme_content_of_files.txt	Mutations-APOBEC_Signature	Level_4	text	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
APOBEC_Analyses:hg19fasta	hg19canonical.fa	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10909:10	Mutation_APOBEC_2014101700	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PRAD-TP.Mutation_APOBEC.Level_4.2014101700.1.0	yes
