Sample	Chromosome	Start.bp	End.bp	Num.Markers	Seg.CN
TCGA-AF-2691-01A-01D-1167-02	1	132	247199705	3206	0.000000
TCGA-AF-2691-01A-01D-1167-02	2	2892000	242281708	3138	0.000000
TCGA-AF-2691-01A-01D-1167-02	3	35174	44224657	563	0.000000
TCGA-AF-2691-01A-01D-1167-02	3	44267014	87427790	614	-0.435854
TCGA-AF-2691-01A-01D-1167-02	3	87427791	199444000	1602	0.000000
TCGA-AF-2691-01A-01D-1167-02	4	1811000	191032661	3036	0.000000
TCGA-AF-2691-01A-01D-1167-02	5	998000	180361001	2463	0.000000
TCGA-AF-2691-01A-01D-1167-02	6	17001	170892857	2350	0.000000
TCGA-AF-2691-01A-01D-1167-02	7	756000	158091001	2247	0.000000
TCGA-AF-2691-01A-01D-1167-02	8	6292	144756001	2224	0.000000
TCGA-AF-2691-01A-01D-1167-02	9	804000	139905340	1580	0.000000
TCGA-AF-2691-01A-01D-1167-02	10	51818	135188211	2155	0.000000
TCGA-AF-2691-01A-01D-1167-02	11	53001	87500988	1237	0.000000
TCGA-AF-2691-01A-01D-1167-02	11	87500989	88541395	14	-0.456479
TCGA-AF-2691-01A-01D-1167-02	11	88541396	132756071	712	0.000000
TCGA-AF-2691-01A-01D-1167-02	12	62751	132289520	1939	0.000000
TCGA-AF-2691-01A-01D-1167-02	13	18415005	113970604	1285	0.000000
TCGA-AF-2691-01A-01D-1167-02	14	20572000	105990001	1455	0.000000
TCGA-AF-2691-01A-01D-1167-02	15	23702313	100260330	1152	0.000000
TCGA-AF-2691-01A-01D-1167-02	16	1	88276535	884	0.000000
TCGA-AF-2691-01A-01D-1167-02	17	1932000	78551107	950	0.000000
TCGA-AF-2691-01A-01D-1167-02	18	332831	76101089	1133	0.000000
TCGA-AF-2691-01A-01D-1167-02	19	21880	46640638	393	0.000000
TCGA-AF-2691-01A-01D-1167-02	19	46640639	47191932	12	0.446643
TCGA-AF-2691-01A-01D-1167-02	19	47191933	63806637	142	0.000000
TCGA-AF-2691-01A-01D-1167-02	20	8001	59964001	1181	0.000000
TCGA-AF-2691-01A-01D-1167-02	21	16017370	46276972	583	0.000000
TCGA-AF-2691-01A-01D-1167-02	22	15247720	49317642	414	0.000000
TCGA-AF-2691-01A-01D-1167-02	X	3286603	22759001	136	0.000000
TCGA-AF-2691-01A-01D-1167-02	X	23443601	25299954	43	0.321714
TCGA-AF-2691-01A-01D-1167-02	X	25299955	153623131	1189	0.000000
TCGA-AF-2692-01A-01D-1167-02	1	132	247199705	3206	0.000000
TCGA-AF-2692-01A-01D-1167-02	2	2892000	242281708	3138	0.000000
TCGA-AF-2692-01A-01D-1167-02	3	35174	199444000	2779	0.000000
TCGA-AF-2692-01A-01D-1167-02	4	1811000	9820000	83	0.000000
TCGA-AF-2692-01A-01D-1167-02	4	9820001	9843000	12	-1.082239
TCGA-AF-2692-01A-01D-1167-02	4	9843001	22786000	208	0.000000
TCGA-AF-2692-01A-01D-1167-02	4	22786001	34512000	210	0.318130
TCGA-AF-2692-01A-01D-1167-02	4	34512001	191032661	2523	0.000000
TCGA-AF-2692-01A-01D-1167-02	5	998000	180361001	2463	0.000000
TCGA-AF-2692-01A-01D-1167-02	6	17001	170892857	2350	0.000000
TCGA-AF-2692-01A-01D-1167-02	7	756000	38250000	495	0.000000
TCGA-AF-2692-01A-01D-1167-02	7	38250001	38275001	21	0.760337
TCGA-AF-2692-01A-01D-1167-02	7	38623533	141727001	1491	0.000000
TCGA-AF-2692-01A-01D-1167-02	7	141911000	141972001	12	0.332798
TCGA-AF-2692-01A-01D-1167-02	7	142634599	158091001	228	0.000000
TCGA-AF-2692-01A-01D-1167-02	8	6292	39169001	517	0.000000
TCGA-AF-2692-01A-01D-1167-02	8	39401000	39507000	17	0.575824
TCGA-AF-2692-01A-01D-1167-02	8	39507001	144756001	1690	0.000000
TCGA-AF-2692-01A-01D-1167-02	9	804000	139905340	1580	0.000000
TCGA-AF-2692-01A-01D-1167-02	10	51818	38819000	571	0.000000
TCGA-AF-2692-01A-01D-1167-02	10	38819001	50877768	58	0.324628
TCGA-AF-2692-01A-01D-1167-02	10	52483000	135188211	1526	0.000000
TCGA-AF-2692-01A-01D-1167-02	11	53001	132756071	1963	0.000000
TCGA-AF-2692-01A-01D-1167-02	12	62751	17661000	256	-0.384254
TCGA-AF-2692-01A-01D-1167-02	12	17661001	132289520	1683	0.000000
TCGA-AF-2692-01A-01D-1167-02	13	18415005	113970604	1285	0.000000
TCGA-AF-2692-01A-01D-1167-02	14	20572000	105990001	1455	0.000000
TCGA-AF-2692-01A-01D-1167-02	15	23702313	100260330	1152	0.000000
TCGA-AF-2692-01A-01D-1167-02	16	1	69373000	689	0.000000
TCGA-AF-2692-01A-01D-1167-02	16	69373001	69826000	18	0.339501
TCGA-AF-2692-01A-01D-1167-02	16	69826001	88276535	177	0.000000
TCGA-AF-2692-01A-01D-1167-02	17	1932000	50524000	585	0.000000
TCGA-AF-2692-01A-01D-1167-02	17	50524001	65573000	252	0.493931
TCGA-AF-2692-01A-01D-1167-02	17	65573001	78551107	113	0.000000
TCGA-AF-2692-01A-01D-1167-02	18	332831	76101089	1133	0.000000
TCGA-AF-2692-01A-01D-1167-02	19	21880	63806637	547	0.000000
TCGA-AF-2692-01A-01D-1167-02	20	8001	59964001	1181	0.000000
TCGA-AF-2692-01A-01D-1167-02	21	16017370	46276972	583	0.000000
TCGA-AF-2692-01A-01D-1167-02	22	15247720	49317642	414	0.000000
TCGA-AF-2692-01A-01D-1167-02	X	3286603	153623131	1368	0.000000
TCGA-AF-3913-01A-02D-1115-02	1	132	12763000	150	0.000000
TCGA-AF-3913-01A-02D-1115-02	1	12763001	33310001	283	-0.650899
TCGA-AF-3913-01A-02D-1115-02	1	33437000	247199705	2773	0.000000
TCGA-AF-3913-01A-02D-1115-02	2	2892000	242281708	3138	0.000000
TCGA-AF-3913-01A-02D-1115-02	3	35174	199444000	2779	0.000000
TCGA-AF-3913-01A-02D-1115-02	4	1811000	67946034	1041	0.000000
TCGA-AF-3913-01A-02D-1115-02	4	67949944	67973000	18	-0.350211
TCGA-AF-3913-01A-02D-1115-02	4	67973001	191032661	1977	0.000000
TCGA-AF-3913-01A-02D-1115-02	5	998000	180361001	2463	0.000000
TCGA-AF-3913-01A-02D-1115-02	6	17001	170892857	2350	0.000000
TCGA-AF-3913-01A-02D-1115-02	7	756000	158091001	2247	0.000000
TCGA-AF-3913-01A-02D-1115-02	8	6292	38367000	500	0.000000
TCGA-AF-3913-01A-02D-1115-02	8	38367001	39708000	40	-0.678071
TCGA-AF-3913-01A-02D-1115-02	8	39708001	41823000	50	0.000000
TCGA-AF-3913-01A-02D-1115-02	8	41823001	42845000	24	0.715737
TCGA-AF-3913-01A-02D-1115-02	8	42845001	64426000	245	0.000000
TCGA-AF-3913-01A-02D-1115-02	8	64426001	66014000	24	0.442720
TCGA-AF-3913-01A-02D-1115-02	8	66014001	66768903	21	1.114712
TCGA-AF-3913-01A-02D-1115-02	8	67136000	69106000	45	1.421606
TCGA-AF-3913-01A-02D-1115-02	8	69106001	70766000	34	0.762467
TCGA-AF-3913-01A-02D-1115-02	8	70766001	84950000	282	1.120323
TCGA-AF-3913-01A-02D-1115-02	8	84950001	86915000	24	0.442720
TCGA-AF-3913-01A-02D-1115-02	8	86915001	112610000	438	0.000000
TCGA-AF-3913-01A-02D-1115-02	8	112610001	115701000	28	0.546145
TCGA-AF-3913-01A-02D-1115-02	8	115701001	116966000	22	1.095387
TCGA-AF-3913-01A-02D-1115-02	8	116966001	142284299	417	0.000000
TCGA-AF-3913-01A-02D-1115-02	8	143534000	144756001	30	0.804576
TCGA-AF-3913-01A-02D-1115-02	9	804000	139905340	1580	0.000000
TCGA-AF-3913-01A-02D-1115-02	10	51818	124798000	1982	0.000000
TCGA-AF-3913-01A-02D-1115-02	10	124798001	128139000	110	-0.520688
TCGA-AF-3913-01A-02D-1115-02	10	128139001	135188211	63	0.000000
TCGA-AF-3913-01A-02D-1115-02	11	53001	132756071	1963	0.000000
TCGA-AF-3913-01A-02D-1115-02	12	62751	111626000	1689	0.000000
TCGA-AF-3913-01A-02D-1115-02	12	111626001	113300000	24	0.622240
TCGA-AF-3913-01A-02D-1115-02	12	113300001	115013000	24	1.272289
TCGA-AF-3913-01A-02D-1115-02	12	115013001	132289520	202	0.000000
TCGA-AF-3913-01A-02D-1115-02	13	18415005	72457001	753	0.000000
TCGA-AF-3913-01A-02D-1115-02	13	72542027	72664000	13	1.379632
TCGA-AF-3913-01A-02D-1115-02	13	72664001	113970604	519	0.000000
TCGA-AF-3913-01A-02D-1115-02	14	20572000	99690000	1356	0.000000
TCGA-AF-3913-01A-02D-1115-02	14	99690001	105990001	99	0.757384
TCGA-AF-3913-01A-02D-1115-02	15	23702313	100260330	1152	0.000000
TCGA-AF-3913-01A-02D-1115-02	16	1	6254001	77	0.000000
TCGA-AF-3913-01A-02D-1115-02	16	6435000	6627001	26	-1.229815
TCGA-AF-3913-01A-02D-1115-02	16	7422000	18964000	89	0.000000
TCGA-AF-3913-01A-02D-1115-02	16	18964001	21154000	22	-0.698509
TCGA-AF-3913-01A-02D-1115-02	16	21154001	28535203	82	0.000000
TCGA-AF-3913-01A-02D-1115-02	16	29255000	31765001	28	3.085954
TCGA-AF-3913-01A-02D-1115-02	16	46514000	88276535	560	0.000000
TCGA-AF-3913-01A-02D-1115-02	17	1932000	63448000	795	0.000000
TCGA-AF-3913-01A-02D-1115-02	17	63448001	67578000	60	-0.439078
TCGA-AF-3913-01A-02D-1115-02	17	67578001	78551107	95	0.000000
TCGA-AF-3913-01A-02D-1115-02	18	332831	76101089	1133	0.000000
TCGA-AF-3913-01A-02D-1115-02	19	21880	24004001	181	0.000000
TCGA-AF-3913-01A-02D-1115-02	19	32585136	34885000	58	1.027588
TCGA-AF-3913-01A-02D-1115-02	19	34885001	63806637	308	0.000000
TCGA-AF-3913-01A-02D-1115-02	20	8001	14497000	256	0.000000
TCGA-AF-3913-01A-02D-1115-02	20	14497001	14688001	19	-0.830766
TCGA-AF-3913-01A-02D-1115-02	20	15176338	15745001	38	-0.421528
TCGA-AF-3913-01A-02D-1115-02	20	15911000	59964001	868	0.000000
TCGA-AF-3913-01A-02D-1115-02	21	16017370	46276972	583	0.000000
TCGA-AF-3913-01A-02D-1115-02	22	15247720	49317642	414	0.000000
TCGA-AF-3913-01A-02D-1115-02	X	3286603	153623131	1368	0.000000
TCGA-AG-3574-01A-01D-1167-02	1	132	247199705	3206	0.000000
TCGA-AG-3574-01A-01D-1167-02	2	2892000	242281708	3138	0.000000
TCGA-AG-3574-01A-01D-1167-02	3	35174	199444000	2779	0.000000
TCGA-AG-3574-01A-01D-1167-02	4	1811000	191032661	3036	0.000000
TCGA-AG-3574-01A-01D-1167-02	5	998000	180361001	2463	0.000000
TCGA-AG-3574-01A-01D-1167-02	6	17001	170892857	2350	0.000000
TCGA-AG-3574-01A-01D-1167-02	7	756000	158091001	2247	0.000000
TCGA-AG-3574-01A-01D-1167-02	8	6292	144756001	2224	0.000000
TCGA-AG-3574-01A-01D-1167-02	9	804000	139905340	1580	0.000000
TCGA-AG-3574-01A-01D-1167-02	10	51818	135188211	2155	0.000000
TCGA-AG-3574-01A-01D-1167-02	11	53001	132756071	1963	0.000000
TCGA-AG-3574-01A-01D-1167-02	12	62751	12416311	152	0.000000
TCGA-AG-3574-01A-01D-1167-02	12	12416312	13767581	24	-0.845588
TCGA-AG-3574-01A-01D-1167-02	12	13767582	87008830	1121	0.000000
TCGA-AG-3574-01A-01D-1167-02	12	87008831	92385386	98	-0.841357
TCGA-AG-3574-01A-01D-1167-02	12	92385387	132289520	544	0.000000
TCGA-AG-3574-01A-01D-1167-02	13	18415005	113970604	1285	0.000000
TCGA-AG-3574-01A-01D-1167-02	14	20572000	105990001	1455	0.000000
TCGA-AG-3574-01A-01D-1167-02	15	23702313	100260330	1152	0.000000
TCGA-AG-3574-01A-01D-1167-02	16	1	88276535	884	0.000000
TCGA-AG-3574-01A-01D-1167-02	17	1932000	10614282	100	0.000000
TCGA-AG-3574-01A-01D-1167-02	17	10614283	12788453	32	-0.690873
TCGA-AG-3574-01A-01D-1167-02	17	12788454	78551107	818	0.000000
TCGA-AG-3574-01A-01D-1167-02	18	332831	76101089	1133	0.000000
TCGA-AG-3574-01A-01D-1167-02	19	21880	63806637	547	0.000000
TCGA-AG-3574-01A-01D-1167-02	20	8001	59964001	1181	0.000000
TCGA-AG-3574-01A-01D-1167-02	21	16017370	46276972	583	0.000000
TCGA-AG-3574-01A-01D-1167-02	22	15247720	49317642	414	0.000000
TCGA-AG-3574-01A-01D-1167-02	X	3286603	153623131	1368	0.000000
TCGA-AG-3727-01A-01D-1167-02	1	132	5183849	28	0.000000
TCGA-AG-3727-01A-01D-1167-02	1	5183850	31307524	360	-0.773353
TCGA-AG-3727-01A-01D-1167-02	1	31307525	96349574	998	0.000000
TCGA-AG-3727-01A-01D-1167-02	1	96349575	97391240	32	-0.889123
TCGA-AG-3727-01A-01D-1167-02	1	97391241	195815136	1075	0.000000
TCGA-AG-3727-01A-01D-1167-02	1	195815137	200639388	74	-0.843902
TCGA-AG-3727-01A-01D-1167-02	1	200639389	207460033	128	0.000000
TCGA-AG-3727-01A-01D-1167-02	1	207479770	247199705	511	0.839468
TCGA-AG-3727-01A-01D-1167-02	2	2892000	33674327	419	0.000000
TCGA-AG-3727-01A-01D-1167-02	2	33674328	54172191	324	-0.855260
TCGA-AG-3727-01A-01D-1167-02	2	54172192	242281708	2395	0.000000
TCGA-AG-3727-01A-01D-1167-02	3	35174	15788064	197	-0.876552
TCGA-AG-3727-01A-01D-1167-02	3	15788065	199444000	2582	0.000000
TCGA-AG-3727-01A-01D-1167-02	4	1811000	191032661	3036	0.000000
TCGA-AG-3727-01A-01D-1167-02	5	998000	180361001	2463	0.000000
TCGA-AG-3727-01A-01D-1167-02	6	17001	170892857	2350	0.000000
TCGA-AG-3727-01A-01D-1167-02	7	756000	127396065	1738	0.000000
TCGA-AG-3727-01A-01D-1167-02	7	127396066	158091001	509	0.827014
TCGA-AG-3727-01A-01D-1167-02	8	6292	113011142	1737	0.000000
TCGA-AG-3727-01A-01D-1167-02	8	113011143	129175534	246	0.897365
TCGA-AG-3727-01A-01D-1167-02	8	129175535	133829257	82	0.000000
TCGA-AG-3727-01A-01D-1167-02	8	133829258	144756001	159	0.806448
TCGA-AG-3727-01A-01D-1167-02	9	804000	139905340	1580	0.000000
TCGA-AG-3727-01A-01D-1167-02	10	51818	135188211	2155	0.000000
TCGA-AG-3727-01A-01D-1167-02	11	53001	2087371	14	0.000000
TCGA-AG-3727-01A-01D-1167-02	11	2087372	2246328	14	1.301555
TCGA-AG-3727-01A-01D-1167-02	11	2246329	105355198	1496	0.000000
TCGA-AG-3727-01A-01D-1167-02	11	105355199	126541399	338	-0.874972
TCGA-AG-3727-01A-01D-1167-02	11	126541400	132756071	101	0.000000
TCGA-AG-3727-01A-01D-1167-02	12	62751	132289520	1939	0.000000
TCGA-AG-3727-01A-01D-1167-02	13	18415005	72542027	754	0.000000
TCGA-AG-3727-01A-01D-1167-02	13	72542028	73489635	36	0.357032
TCGA-AG-3727-01A-01D-1167-02	13	73489636	113970604	495	0.000000
TCGA-AG-3727-01A-01D-1167-02	14	20572000	105990001	1455	0.000000
TCGA-AG-3727-01A-01D-1167-02	15	23702313	40326701	192	0.000000
TCGA-AG-3727-01A-01D-1167-02	15	40326745	58094469	336	-0.848410
TCGA-AG-3727-01A-01D-1167-02	15	58094470	100260330	624	0.000000
TCGA-AG-3727-01A-01D-1167-02	16	1	88276535	884	0.000000
TCGA-AG-3727-01A-01D-1167-02	17	1932000	78551107	950	0.000000
TCGA-AG-3727-01A-01D-1167-02	18	332831	76101089	1133	0.000000
TCGA-AG-3727-01A-01D-1167-02	19	21880	63806637	547	0.000000
TCGA-AG-3727-01A-01D-1167-02	20	8001	59964001	1181	0.000000
TCGA-AG-3727-01A-01D-1167-02	21	16017370	39105776	508	0.000000
TCGA-AG-3727-01A-01D-1167-02	21	39105777	46276972	75	-0.858320
TCGA-AG-3727-01A-01D-1167-02	22	15247720	49317642	414	0.000000
TCGA-AG-3727-01A-01D-1167-02	X	3286603	153623131	1368	0.000000
TCGA-AG-3728-01A-01D-1115-02	1	132	247199705	3206	0.000000
TCGA-AG-3728-01A-01D-1115-02	2	2892000	242281708	3138	0.000000
TCGA-AG-3728-01A-01D-1115-02	3	35174	199444000	2779	0.000000
TCGA-AG-3728-01A-01D-1115-02	4	1811000	191032661	3036	0.000000
TCGA-AG-3728-01A-01D-1115-02	5	998000	180361001	2463	0.000000
TCGA-AG-3728-01A-01D-1115-02	6	17001	105681000	1388	0.000000
TCGA-AG-3728-01A-01D-1115-02	6	105681001	107717000	42	1.260286
TCGA-AG-3728-01A-01D-1115-02	6	107717001	170892857	920	0.000000
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