[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTSARC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/11589723/SARC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/11546378/transformed.cor.cli.txt"

nPatients in clinical file=261, in cluster file=257, common to both=257
[1]  66 257
[1] "AMP PEAK  1(1P32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           94                           163 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           94                           163 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          104                           153 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          104                           153 
[1] "AMP PEAK  3(1Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE 
                          102                           155 
  AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE 
                          102                           155 
[1] "AMP PEAK  4(2P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE 
                           64                           193 
  AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE 
                           64                           193 
[1] "AMP PEAK  5(3P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE 
                           69                           188 
  AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE 
                           69                           188 
[1] "AMP PEAK  6(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         78                         179 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                         78                         179 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           119                            138 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           119                            138 
[1] "AMP PEAK  8(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                           60                           197 
  AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE 
                           60                           197 
[1] "AMP PEAK  9(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE 
                           75                           182 
  AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE 
                           75                           182 
[1] "AMP PEAK 10(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                           77                           180 
  AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE 
                           77                           180 
[1] "AMP PEAK 11(8P11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE 
                            81                            176 
  AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE 
                            81                            176 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            83                            174 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            83                            174 
[1] "AMP PEAK 13(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE 
                            36                            221 
  AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE 
                            36                            221 
[1] "AMP PEAK 14(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE 
                          94                          163 
  AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE 
                          94                          163 
[1] "AMP PEAK 15(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          54                          203 
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          54                          203 
[1] "AMP PEAK 16(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            84                            173 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            84                            173 
[1] "AMP PEAK 17(17P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE 
                         102                          155 
  AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE 
                         102                          155 
[1] "AMP PEAK 18(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                           104                            153 
  AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE 
                           104                            153 
[1] "AMP PEAK 19(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE 
                            79                            178 
  AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE 
                            79                            178 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           107                            150 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           107                            150 
[1] "AMP PEAK 21(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          93                          164 
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                          93                          164 
[1] "AMP PEAK 22(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                             98                             159 
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                             98                             159 
[1] "AMP PEAK 23(21Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE 
                            73                            184 
  AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE 
                            73                            184 
[1] "AMP PEAK 24(XP21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE 
                           97                           160 
  AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE 
                           97                           160 
[1] "AMP PEAK 25(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           46                           211 
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           46                           211 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            69                            188 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            69                            188 
[1] "DEL PEAK  2(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         80                         177 
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         80                         177 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           94                           163 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           94                           163 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          108                           149 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          108                           149 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          110                           147 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          110                           147 
[1] "DEL PEAK  6(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            65                            192 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            65                            192 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            51                            206 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            51                            206 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         54                         203 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         54                         203 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           94                           163 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           94                           163 
[1] "DEL PEAK 10(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            33                            224 
  DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE 
                            33                            224 
[1] "DEL PEAK 11(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           81                           176 
  DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE 
                           81                           176 
[1] "DEL PEAK 12(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE 
                           78                           179 
  DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE 
                           78                           179 
[1] "DEL PEAK 13(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           71                           186 
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           71                           186 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           81                           176 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           81                           176 
[1] "DEL PEAK 15(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          100                           157 
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          100                           157 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          114                           143 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          114                           143 
[1] "DEL PEAK 17(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           61                           196 
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           61                           196 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           128                            129 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           128                            129 
[1] "DEL PEAK 19(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            138                             119 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            138                             119 
[1] "DEL PEAK 20(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           132                            125 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           132                            125 
[1] "DEL PEAK 21(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           110                            147 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           110                            147 
[1] "DEL PEAK 22(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE 
                           123                            134 
  DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE 
                           123                            134 
[1] "DEL PEAK 23(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE 
                            87                            170 
  DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE 
                            87                            170 
[1] "DEL PEAK 24(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE 
                          56                          201 
  DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE 
                          56                          201 
[1] "DEL PEAK 25(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE 
                             69                             188 
  DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE 
                             69                             188 
[1] "DEL PEAK 26(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           180                             77 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           180                             77 
[1] "DEL PEAK 27(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE 
                            80                            177 
  DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE 
                            80                            177 
[1] "DEL PEAK 28(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE 
                           130                            127 
  DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE 
                           130                            127 
[1] "DEL PEAK 29(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                           134                            123 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                           134                            123 
[1] "DEL PEAK 30(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE 
                           129                            128 
  DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE 
                           129                            128 
[1] "DEL PEAK 31(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE 
                            81                            176 
  DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE 
                            81                            176 
[1] "DEL PEAK 32(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE 
                            67                            190 
  DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE 
                            67                            190 
[1] "DEL PEAK 33(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                          86                          171 
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                          86                          171 
[1] "DEL PEAK 34(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                            70                            187 
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                            70                            187 
[1] "DEL PEAK 35(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE 
                            106                             151 
  DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE 
                            106                             151 
[1] "DEL PEAK 36(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE 
                            51                            206 
  DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE 
                            51                            206 
[1] "DEL PEAK 37(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                            66                            191 
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                            66                            191 
[1] "DEL PEAK 38(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                             83                             174 
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                             83                             174 
[1] "DEL PEAK 39(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE 
                           55                           202 
  DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE 
                           55                           202 
[1] "DEL PEAK 40(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE 
                          114                           143 
  DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE 
                          114                           143 
[1] "DEL PEAK 41(XQ22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE 
                          123                           134 
  DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE 
                          123                           134 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 257 columns.

Variable 1:'CN_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 257 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=7, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=8, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       12     13     19     10     16     24
  AMP PEAK  1(1P32.1) WILD-TYPE     14     45     24     41     18     20
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED        0
  AMP PEAK  1(1P32.1) WILD-TYPE      1
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                          13                            45
  CLUS_3                          19                            24
  CLUS_4                          10                            41
  CLUS_5                          16                            18
  CLUS_6                          24                            20
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       15     14     12      3      3     35
  AMP PEAK  1(1P32.1) WILD-TYPE     27     27     45     29     15      8
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED        3
  AMP PEAK  1(1P32.1) WILD-TYPE      2
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          15                            27
  CLUS_2                          14                            27
  CLUS_3                          12                            45
  CLUS_4                           3                            29
  CLUS_5                           3                            15
  CLUS_6                          35                             8
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       25     16     45      8
  AMP PEAK  1(1P32.1) WILD-TYPE     43     60     18     38
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          25                            43
  CLUS_2                          16                            60
  CLUS_3                          45                            18
  CLUS_4                           8                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       19      8     10      7     43      6
  AMP PEAK  1(1P32.1) WILD-TYPE     28     14     39     21     16     23
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED        1
  AMP PEAK  1(1P32.1) WILD-TYPE     18
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                           8                            14
  CLUS_3                          10                            39
  CLUS_4                           7                            21
  CLUS_5                          43                            16
  CLUS_6                           6                            23
  CLUS_7                           1                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       44     23     25
  AMP PEAK  1(1P32.1) WILD-TYPE     65     24     74
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          44                            65
  CLUS_2                          23                            24
  CLUS_3                          25                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       40     15     34      3
  AMP PEAK  1(1P32.1) WILD-TYPE     42     22     80     19
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          40                            42
  CLUS_2                          15                            22
  CLUS_3                          34                            80
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       33     22     23
  AMP PEAK  1(1P32.1) WILD-TYPE     52     42     22
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          33                            52
  CLUS_2                          22                            42
  CLUS_3                          23                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       10     12     11     11      2     17
  AMP PEAK  1(1P32.1) WILD-TYPE     14     20     26     12     10      6
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  1(1P32.1) MUTATED       12      3
  AMP PEAK  1(1P32.1) WILD-TYPE      9     19
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          12                            20
  CLUS_3                          11                            26
  CLUS_4                          11                            12
  CLUS_5                           2                            10
  CLUS_6                          17                             6
  CLUS_7                          12                             9
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       15      6     17     15     18     32
  AMP PEAK  2(1Q21.3) WILD-TYPE     11     52     26     36     16     12
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED        1
  AMP PEAK  2(1Q21.3) WILD-TYPE      0
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          15                            11
  CLUS_2                           6                            52
  CLUS_3                          17                            26
  CLUS_4                          15                            36
  CLUS_5                          18                            16
  CLUS_6                          32                            12
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       14      9     21     11      7     27
  AMP PEAK  2(1Q21.3) WILD-TYPE     28     32     36     21     11     16
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED        3
  AMP PEAK  2(1Q21.3) WILD-TYPE      2
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                           9                            32
  CLUS_3                          21                            36
  CLUS_4                          11                            21
  CLUS_5                           7                            11
  CLUS_6                          27                            16
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       24     31     33     16
  AMP PEAK  2(1Q21.3) WILD-TYPE     44     45     30     30
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          24                            44
  CLUS_2                          31                            45
  CLUS_3                          33                            30
  CLUS_4                          16                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       20      7     14     10     30     17
  AMP PEAK  2(1Q21.3) WILD-TYPE     27     15     35     18     29     12
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED        6
  AMP PEAK  2(1Q21.3) WILD-TYPE     13
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          20                            27
  CLUS_2                           7                            15
  CLUS_3                          14                            35
  CLUS_4                          10                            18
  CLUS_5                          30                            29
  CLUS_6                          17                            12
  CLUS_7                           6                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       41     22     39
  AMP PEAK  2(1Q21.3) WILD-TYPE     68     25     60
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          41                            68
  CLUS_2                          22                            25
  CLUS_3                          39                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       37     11     49      5
  AMP PEAK  2(1Q21.3) WILD-TYPE     45     26     65     17
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          37                            45
  CLUS_2                          11                            26
  CLUS_3                          49                            65
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       30     33     24
  AMP PEAK  2(1Q21.3) WILD-TYPE     55     31     21
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          30                            55
  CLUS_2                          33                            31
  CLUS_3                          24                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       13     11     15     14      6     10
  AMP PEAK  2(1Q21.3) WILD-TYPE     11     21     22      9      6     13
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(1Q21.3) MUTATED       12      6
  AMP PEAK  2(1Q21.3) WILD-TYPE      9     16
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          11                            21
  CLUS_3                          15                            22
  CLUS_4                          14                             9
  CLUS_5                           6                             6
  CLUS_6                          10                            13
  CLUS_7                          12                             9
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       13     11     20     12     14     31
  AMP PEAK  3(1Q24.3) WILD-TYPE     13     47     23     39     20     13
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q24.3) MUTATED        1
  AMP PEAK  3(1Q24.3) WILD-TYPE      0
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          13                            13
  CLUS_2                          11                            47
  CLUS_3                          20                            23
  CLUS_4                          12                            39
  CLUS_5                          14                            20
  CLUS_6                          31                            13
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       19     11     20      9      4     27
  AMP PEAK  3(1Q24.3) WILD-TYPE     23     30     37     23     14     16
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q24.3) MUTATED        3
  AMP PEAK  3(1Q24.3) WILD-TYPE      2
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          19                            23
  CLUS_2                          11                            30
  CLUS_3                          20                            37
  CLUS_4                           9                            23
  CLUS_5                           4                            14
  CLUS_6                          27                            16
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       32     27     31     12
  AMP PEAK  3(1Q24.3) WILD-TYPE     36     49     32     34
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          32                            36
  CLUS_2                          27                            49
  CLUS_3                          31                            32
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       24      8     15      8     29     12
  AMP PEAK  3(1Q24.3) WILD-TYPE     23     14     34     20     30     17
                               vv
clus                            CLUS_7
  AMP PEAK  3(1Q24.3) MUTATED        6
  AMP PEAK  3(1Q24.3) WILD-TYPE     13
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                           8                            14
  CLUS_3                          15                            34
  CLUS_4                           8                            20
  CLUS_5                          29                            30
  CLUS_6                          12                            17
  CLUS_7                           6                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       44     19     37
  AMP PEAK  3(1Q24.3) WILD-TYPE     65     28     62
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          44                            65
  CLUS_2                          19                            28
  CLUS_3                          37                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q24.3) MUTATED       39     12     44      5
  AMP PEAK  3(1Q24.3) WILD-TYPE     43     25     70     17
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          39                            43
  CLUS_2                          12                            25
  CLUS_3                          44                            70
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q24.3) MUTATED       33     30     20
  AMP PEAK  3(1Q24.3) WILD-TYPE     52     34     25
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          33                            52
  CLUS_2                          30                            34
  CLUS_3                          20                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q24.3) MUTATED       11     14     13     14      5     11
  AMP PEAK  3(1Q24.3) WILD-TYPE     13     18     24      9      7     12
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  3(1Q24.3) MUTATED        9      6
  AMP PEAK  3(1Q24.3) WILD-TYPE     12     16
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q24.3) MUTATED AMP PEAK  3(1Q24.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          14                            18
  CLUS_3                          13                            24
  CLUS_4                          14                             9
  CLUS_5                           5                             7
  CLUS_6                          11                            12
  CLUS_7                           9                            12
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED        3      5     15     12     16     13
  AMP PEAK  4(2P11.2) WILD-TYPE     23     53     28     39     18     31
                               vv
clus                            CLUS_7
  AMP PEAK  4(2P11.2) MUTATED        0
  AMP PEAK  4(2P11.2) WILD-TYPE      1
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                           3                            23
  CLUS_2                           5                            53
  CLUS_3                          15                            28
  CLUS_4                          12                            39
  CLUS_5                          16                            18
  CLUS_6                          13                            31
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED       13      6     14      6      1     15
  AMP PEAK  4(2P11.2) WILD-TYPE     29     35     43     26     17     28
                               vv
clus                            CLUS_7
  AMP PEAK  4(2P11.2) MUTATED        4
  AMP PEAK  4(2P11.2) WILD-TYPE      1
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                           6                            35
  CLUS_3                          14                            43
  CLUS_4                           6                            26
  CLUS_5                           1                            17
  CLUS_6                          15                            28
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       18     17     17     12
  AMP PEAK  4(2P11.2) WILD-TYPE     50     59     46     34
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          18                            50
  CLUS_2                          17                            59
  CLUS_3                          17                            46
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED       16      5     11      7     15      6
  AMP PEAK  4(2P11.2) WILD-TYPE     31     17     38     21     44     23
                               vv
clus                            CLUS_7
  AMP PEAK  4(2P11.2) MUTATED        4
  AMP PEAK  4(2P11.2) WILD-TYPE     15
D4V4, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          16                            31
  CLUS_2                           5                            17
  CLUS_3                          11                            38
  CLUS_4                           7                            21
  CLUS_5                          15                            44
  CLUS_6                           6                            23
  CLUS_7                           4                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       27     12     24
  AMP PEAK  4(2P11.2) WILD-TYPE     82     35     75
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          27                            82
  CLUS_2                          12                            35
  CLUS_3                          24                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2P11.2) MUTATED       23     10     28      2
  AMP PEAK  4(2P11.2) WILD-TYPE     59     27     86     20
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          23                            59
  CLUS_2                          10                            27
  CLUS_3                          28                            86
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2P11.2) MUTATED       22     20     12
  AMP PEAK  4(2P11.2) WILD-TYPE     63     44     33
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                          22                            63
  CLUS_2                          20                            44
  CLUS_3                          12                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2P11.2) MUTATED        7     10     10      6      3      6
  AMP PEAK  4(2P11.2) WILD-TYPE     17     22     27     17      9     17
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(2P11.2) MUTATED        6      6
  AMP PEAK  4(2P11.2) WILD-TYPE     15     16
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P11.2) MUTATED AMP PEAK  4(2P11.2) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          10                            22
  CLUS_3                          10                            27
  CLUS_4                           6                            17
  CLUS_5                           3                             9
  CLUS_6                           6                            17
  CLUS_7                           6                            15
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED       11      9      9      6     14     20
  AMP PEAK  5(3P12.1) WILD-TYPE     15     49     34     45     20     24
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.1) MUTATED        0
  AMP PEAK  5(3P12.1) WILD-TYPE      1
D5V1, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          11                            15
  CLUS_2                           9                            49
  CLUS_3                           9                            34
  CLUS_4                           6                            45
  CLUS_5                          14                            20
  CLUS_6                          20                            24
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED       14     11     15      1      1     18
  AMP PEAK  5(3P12.1) WILD-TYPE     28     30     42     31     17     25
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.1) MUTATED        0
  AMP PEAK  5(3P12.1) WILD-TYPE      5
D5V2, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                          11                            30
  CLUS_3                          15                            42
  CLUS_4                           1                            31
  CLUS_5                           1                            17
  CLUS_6                          18                            25
  CLUS_7                           0                             5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       21     16     28      3
  AMP PEAK  5(3P12.1) WILD-TYPE     47     60     35     43
D5V3, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          21                            47
  CLUS_2                          16                            60
  CLUS_3                          28                            35
  CLUS_4                           3                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED       18      7     12      2     25      4
  AMP PEAK  5(3P12.1) WILD-TYPE     29     15     37     26     34     25
                               vv
clus                            CLUS_7
  AMP PEAK  5(3P12.1) MUTATED        0
  AMP PEAK  5(3P12.1) WILD-TYPE     19
D5V4, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          18                            29
  CLUS_2                           7                            15
  CLUS_3                          12                            37
  CLUS_4                           2                            26
  CLUS_5                          25                            34
  CLUS_6                           4                            25
  CLUS_7                           0                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       28     16     25
  AMP PEAK  5(3P12.1) WILD-TYPE     81     31     74
D5V5, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          28                            81
  CLUS_2                          16                            31
  CLUS_3                          25                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3P12.1) MUTATED       29      9     31      0
  AMP PEAK  5(3P12.1) WILD-TYPE     53     28     83     22
D5V6, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          29                            53
  CLUS_2                           9                            28
  CLUS_3                          31                            83
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3P12.1) MUTATED       19     17     24
  AMP PEAK  5(3P12.1) WILD-TYPE     66     47     21
D5V7, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          17                            47
  CLUS_3                          24                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3P12.1) MUTATED        7      9     11     11      2     10
  AMP PEAK  5(3P12.1) WILD-TYPE     17     23     26     12     10     13
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  5(3P12.1) MUTATED       10      0
  AMP PEAK  5(3P12.1) WILD-TYPE     11     22
D5V8, multiclass
        clus
vv       AMP PEAK  5(3P12.1) MUTATED AMP PEAK  5(3P12.1) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                           9                            23
  CLUS_3                          11                            26
  CLUS_4                          11                            12
  CLUS_5                           2                            10
  CLUS_6                          10                            13
  CLUS_7                          10                            11
  CLUS_8                           0                            22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED        8      7     12     13     16     22      0
  AMP PEAK  6(4Q12) WILD-TYPE     18     51     31     38     18     22      1
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         8                          18
  CLUS_2                         7                          51
  CLUS_3                        12                          31
  CLUS_4                        13                          38
  CLUS_5                        16                          18
  CLUS_6                        22                          22
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED       16     12     11      5      1     23      3
  AMP PEAK  6(4Q12) WILD-TYPE     26     29     46     27     17     20      2
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        16                          26
  CLUS_2                        12                          29
  CLUS_3                        11                          46
  CLUS_4                         5                          27
  CLUS_5                         1                          17
  CLUS_6                        23                          20
  CLUS_7                         3                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       26     14     32      6
  AMP PEAK  6(4Q12) WILD-TYPE     42     62     31     40
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        26                          42
  CLUS_2                        14                          62
  CLUS_3                        32                          31
  CLUS_4                         6                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED       19      8      7      8     28      7      1
  AMP PEAK  6(4Q12) WILD-TYPE     28     14     42     20     31     22     18
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        19                          28
  CLUS_2                         8                          14
  CLUS_3                         7                          42
  CLUS_4                         8                          20
  CLUS_5                        28                          31
  CLUS_6                         7                          22
  CLUS_7                         1                          18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       31     21     25
  AMP PEAK  6(4Q12) WILD-TYPE     78     26     74
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        31                          78
  CLUS_2                        21                          26
  CLUS_3                        25                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(4Q12) MUTATED       28     15     33      1
  AMP PEAK  6(4Q12) WILD-TYPE     54     22     81     21
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        28                          54
  CLUS_2                        15                          22
  CLUS_3                        33                          81
  CLUS_4                         1                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q12) MUTATED       23     22     22
  AMP PEAK  6(4Q12) WILD-TYPE     62     42     23
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                        23                          62
  CLUS_2                        22                          42
  CLUS_3                        22                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(4Q12) MUTATED        9      9      8     13      4     12      9
  AMP PEAK  6(4Q12) WILD-TYPE     15     23     29     10      8     11     12
                             vv
clus                          CLUS_8
  AMP PEAK  6(4Q12) MUTATED        3
  AMP PEAK  6(4Q12) WILD-TYPE     19
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                         9                          15
  CLUS_2                         9                          23
  CLUS_3                         8                          29
  CLUS_4                        13                          10
  CLUS_5                         4                           8
  CLUS_6                        12                          11
  CLUS_7                         9                          12
  CLUS_8                         3                          19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       26     14     23     21     14     21
  AMP PEAK  7(5P15.33) WILD-TYPE      0     44     20     30     20     23
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED        0
  AMP PEAK  7(5P15.33) WILD-TYPE      1
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           26                              0
  CLUS_2                           14                             44
  CLUS_3                           23                             20
  CLUS_4                           21                             30
  CLUS_5                           14                             20
  CLUS_6                           21                             23
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       26     20     25     10      3     24
  AMP PEAK  7(5P15.33) WILD-TYPE     16     21     32     22     15     19
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED        3
  AMP PEAK  7(5P15.33) WILD-TYPE      2
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           26                             16
  CLUS_2                           20                             21
  CLUS_3                           25                             32
  CLUS_4                           10                             22
  CLUS_5                            3                             15
  CLUS_6                           24                             19
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       37     29     36     16
  AMP PEAK  7(5P15.33) WILD-TYPE     31     47     27     30
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           37                             31
  CLUS_2                           29                             47
  CLUS_3                           36                             27
  CLUS_4                           16                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       33      8     23      9     32      6
  AMP PEAK  7(5P15.33) WILD-TYPE     14     14     26     19     27     23
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED        7
  AMP PEAK  7(5P15.33) WILD-TYPE     12
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           33                             14
  CLUS_2                            8                             14
  CLUS_3                           23                             26
  CLUS_4                            9                             19
  CLUS_5                           32                             27
  CLUS_6                            6                             23
  CLUS_7                            7                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       50     26     42
  AMP PEAK  7(5P15.33) WILD-TYPE     59     21     57
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           50                             59
  CLUS_2                           26                             21
  CLUS_3                           42                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5P15.33) MUTATED       48     15     50      5
  AMP PEAK  7(5P15.33) WILD-TYPE     34     22     64     17
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           48                             34
  CLUS_2                           15                             22
  CLUS_3                           50                             64
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       40     29     24
  AMP PEAK  7(5P15.33) WILD-TYPE     45     35     21
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           40                             45
  CLUS_2                           29                             35
  CLUS_3                           24                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       11     18     18     13      3     10
  AMP PEAK  7(5P15.33) WILD-TYPE     13     14     19     10      9     13
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  7(5P15.33) MUTATED       10     10
  AMP PEAK  7(5P15.33) WILD-TYPE     11     12
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                           18                             14
  CLUS_3                           18                             19
  CLUS_4                           13                             10
  CLUS_5                            3                              9
  CLUS_6                           10                             13
  CLUS_7                           10                             11
  CLUS_8                           10                             12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       10      5     14      4      8     19
  AMP PEAK  8(6P21.1) WILD-TYPE     16     53     29     47     26     25
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED        0
  AMP PEAK  8(6P21.1) WILD-TYPE      1
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          10                            16
  CLUS_2                           5                            53
  CLUS_3                          14                            29
  CLUS_4                           4                            47
  CLUS_5                           8                            26
  CLUS_6                          19                            25
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       20      5      5      5      0     17
  AMP PEAK  8(6P21.1) WILD-TYPE     22     36     52     27     18     26
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED        3
  AMP PEAK  8(6P21.1) WILD-TYPE      2
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          20                            22
  CLUS_2                           5                            36
  CLUS_3                           5                            52
  CLUS_4                           5                            27
  CLUS_5                           0                            18
  CLUS_6                          17                            26
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       25      7     19      9
  AMP PEAK  8(6P21.1) WILD-TYPE     43     69     44     37
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          25                            43
  CLUS_2                           7                            69
  CLUS_3                          19                            44
  CLUS_4                           9                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED       21      3      3      6     20      4
  AMP PEAK  8(6P21.1) WILD-TYPE     26     19     46     22     39     25
                               vv
clus                            CLUS_7
  AMP PEAK  8(6P21.1) MUTATED        3
  AMP PEAK  8(6P21.1) WILD-TYPE     16
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                           3                            19
  CLUS_3                           3                            46
  CLUS_4                           6                            22
  CLUS_5                          20                            39
  CLUS_6                           4                            25
  CLUS_7                           3                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       30     15     14
  AMP PEAK  8(6P21.1) WILD-TYPE     79     32     85
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          30                            79
  CLUS_2                          15                            32
  CLUS_3                          14                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P21.1) MUTATED       29      9     18      3
  AMP PEAK  8(6P21.1) WILD-TYPE     53     28     96     19
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          29                            53
  CLUS_2                           9                            28
  CLUS_3                          18                            96
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P21.1) MUTATED       23     12     14
  AMP PEAK  8(6P21.1) WILD-TYPE     62     52     31
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          12                            52
  CLUS_3                          14                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P21.1) MUTATED        9     10      5      9      1      9
  AMP PEAK  8(6P21.1) WILD-TYPE     15     22     32     14     11     14
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  8(6P21.1) MUTATED        3      3
  AMP PEAK  8(6P21.1) WILD-TYPE     18     19
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P21.1) MUTATED AMP PEAK  8(6P21.1) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          10                            22
  CLUS_3                           5                            32
  CLUS_4                           9                            14
  CLUS_5                           1                            11
  CLUS_6                           9                            14
  CLUS_7                           3                            18
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       10     11     23      6     10     15
  AMP PEAK  9(6Q25.1) WILD-TYPE     16     47     20     45     24     29
                               vv
clus                            CLUS_7
  AMP PEAK  9(6Q25.1) MUTATED        0
  AMP PEAK  9(6Q25.1) WILD-TYPE      1
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          10                            16
  CLUS_2                          11                            47
  CLUS_3                          23                            20
  CLUS_4                           6                            45
  CLUS_5                          10                            24
  CLUS_6                          15                            29
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       27     15      7      3      1     16
  AMP PEAK  9(6Q25.1) WILD-TYPE     15     26     50     29     17     27
                               vv
clus                            CLUS_7
  AMP PEAK  9(6Q25.1) MUTATED        1
  AMP PEAK  9(6Q25.1) WILD-TYPE      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          27                            15
  CLUS_2                          15                            26
  CLUS_3                           7                            50
  CLUS_4                           3                            29
  CLUS_5                           1                            17
  CLUS_6                          16                            27
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       38      8     20      8
  AMP PEAK  9(6Q25.1) WILD-TYPE     30     68     43     38
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          38                            30
  CLUS_2                           8                            68
  CLUS_3                          20                            43
  CLUS_4                           8                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       26     13      5      8     17      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     21      9     44     20     42     26
                               vv
clus                            CLUS_7
  AMP PEAK  9(6Q25.1) MUTATED        2
  AMP PEAK  9(6Q25.1) WILD-TYPE     17
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                          13                             9
  CLUS_3                           5                            44
  CLUS_4                           8                            20
  CLUS_5                          17                            42
  CLUS_6                           3                            26
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       43     16     16
  AMP PEAK  9(6Q25.1) WILD-TYPE     66     31     83
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          43                            66
  CLUS_2                          16                            31
  CLUS_3                          16                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q25.1) MUTATED       37     14     22      2
  AMP PEAK  9(6Q25.1) WILD-TYPE     45     23     92     20
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          37                            45
  CLUS_2                          14                            23
  CLUS_3                          22                            92
  CLUS_4                           2                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q25.1) MUTATED       29     13     23
  AMP PEAK  9(6Q25.1) WILD-TYPE     56     51     22
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          29                            56
  CLUS_2                          13                            51
  CLUS_3                          23                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q25.1) MUTATED       10     17      6     10      2      8
  AMP PEAK  9(6Q25.1) WILD-TYPE     14     15     31     13     10     15
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  9(6Q25.1) MUTATED        9      3
  AMP PEAK  9(6Q25.1) WILD-TYPE     12     19
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q25.1) MUTATED AMP PEAK  9(6Q25.1) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          17                            15
  CLUS_3                           6                            31
  CLUS_4                          10                            13
  CLUS_5                           2                            10
  CLUS_6                           8                            15
  CLUS_7                           9                            12
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       12      8     18     14     14     11
  AMP PEAK 10(7Q31.2) WILD-TYPE     14     50     25     37     20     33
                               vv
clus                            CLUS_7
  AMP PEAK 10(7Q31.2) MUTATED        0
  AMP PEAK 10(7Q31.2) WILD-TYPE      1
D10V1, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                           8                            50
  CLUS_3                          18                            25
  CLUS_4                          14                            37
  CLUS_5                          14                            20
  CLUS_6                          11                            33
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       21     13      8      6      1     17
  AMP PEAK 10(7Q31.2) WILD-TYPE     21     28     49     26     17     26
                               vv
clus                            CLUS_7
  AMP PEAK 10(7Q31.2) MUTATED        3
  AMP PEAK 10(7Q31.2) WILD-TYPE      2
D10V2, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          21                            21
  CLUS_2                          13                            28
  CLUS_3                           8                            49
  CLUS_4                           6                            26
  CLUS_5                           1                            17
  CLUS_6                          17                            26
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       28     10     27     12
  AMP PEAK 10(7Q31.2) WILD-TYPE     40     66     36     34
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          28                            40
  CLUS_2                          10                            66
  CLUS_3                          27                            36
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       21      8      6     10     24      5
  AMP PEAK 10(7Q31.2) WILD-TYPE     26     14     43     18     35     24
                               vv
clus                            CLUS_7
  AMP PEAK 10(7Q31.2) MUTATED        3
  AMP PEAK 10(7Q31.2) WILD-TYPE     16
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          21                            26
  CLUS_2                           8                            14
  CLUS_3                           6                            43
  CLUS_4                          10                            18
  CLUS_5                          24                            35
  CLUS_6                           5                            24
  CLUS_7                           3                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       32     24     21
  AMP PEAK 10(7Q31.2) WILD-TYPE     77     23     78
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          32                            77
  CLUS_2                          24                            23
  CLUS_3                          21                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7Q31.2) MUTATED       28     17     28      4
  AMP PEAK 10(7Q31.2) WILD-TYPE     54     20     86     18
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          28                            54
  CLUS_2                          17                            20
  CLUS_3                          28                            86
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7Q31.2) MUTATED       24     11     26
  AMP PEAK 10(7Q31.2) WILD-TYPE     61     53     19
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          24                            61
  CLUS_2                          11                            53
  CLUS_3                          26                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7Q31.2) MUTATED       11     12      5     12      1      3
  AMP PEAK 10(7Q31.2) WILD-TYPE     13     20     32     11     11     20
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 10(7Q31.2) MUTATED       12      5
  AMP PEAK 10(7Q31.2) WILD-TYPE      9     17
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q31.2) MUTATED AMP PEAK 10(7Q31.2) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          12                            20
  CLUS_3                           5                            32
  CLUS_4                          12                            11
  CLUS_5                           1                            11
  CLUS_6                           3                            20
  CLUS_7                          12                             9
  CLUS_8                           5                            17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED       16      8     12     16     14     15
  AMP PEAK 11(8P11.22) WILD-TYPE     10     50     31     35     20     29
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.22) MUTATED        0
  AMP PEAK 11(8P11.22) WILD-TYPE      1
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           16                             10
  CLUS_2                            8                             50
  CLUS_3                           12                             31
  CLUS_4                           16                             35
  CLUS_5                           14                             20
  CLUS_6                           15                             29
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED       17     13     16      5      3     19
  AMP PEAK 11(8P11.22) WILD-TYPE     25     28     41     27     15     24
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.22) MUTATED        2
  AMP PEAK 11(8P11.22) WILD-TYPE      3
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                           13                             28
  CLUS_3                           16                             41
  CLUS_4                            5                             27
  CLUS_5                            3                             15
  CLUS_6                           19                             24
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       22     20     31      8
  AMP PEAK 11(8P11.22) WILD-TYPE     46     56     32     38
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           22                             46
  CLUS_2                           20                             56
  CLUS_3                           31                             32
  CLUS_4                            8                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED       18      6     13      7     28      7
  AMP PEAK 11(8P11.22) WILD-TYPE     29     16     36     21     31     22
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.22) MUTATED        2
  AMP PEAK 11(8P11.22) WILD-TYPE     17
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                            6                             16
  CLUS_3                           13                             36
  CLUS_4                            7                             21
  CLUS_5                           28                             31
  CLUS_6                            7                             22
  CLUS_7                            2                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       29     20     31
  AMP PEAK 11(8P11.22) WILD-TYPE     80     27     68
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           29                             80
  CLUS_2                           20                             27
  CLUS_3                           31                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8P11.22) MUTATED       32     10     37      1
  AMP PEAK 11(8P11.22) WILD-TYPE     50     27     77     21
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           32                             50
  CLUS_2                           10                             27
  CLUS_3                           37                             77
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.22) MUTATED       26     22     19
  AMP PEAK 11(8P11.22) WILD-TYPE     59     42     26
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                           26                             59
  CLUS_2                           22                             42
  CLUS_3                           19                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.22) MUTATED        7     12     11     13      4      9
  AMP PEAK 11(8P11.22) WILD-TYPE     17     20     26     10      8     14
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(8P11.22) MUTATED        8      3
  AMP PEAK 11(8P11.22) WILD-TYPE     13     19
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.22) MUTATED AMP PEAK 11(8P11.22) WILD-TYPE
  CLUS_1                            7                             17
  CLUS_2                           12                             20
  CLUS_3                           11                             26
  CLUS_4                           13                             10
  CLUS_5                            4                              8
  CLUS_6                            9                             14
  CLUS_7                            8                             13
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        9      8     13     20     12     21
  AMP PEAK 12(8Q24.21) WILD-TYPE     17     50     30     31     22     23
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        0
  AMP PEAK 12(8Q24.21) WILD-TYPE      1
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                            8                             50
  CLUS_3                           13                             30
  CLUS_4                           20                             31
  CLUS_5                           12                             22
  CLUS_6                           21                             23
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       11     10     18     11      2     21
  AMP PEAK 12(8Q24.21) WILD-TYPE     31     31     39     21     16     22
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        3
  AMP PEAK 12(8Q24.21) WILD-TYPE      2
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           10                             31
  CLUS_3                           18                             39
  CLUS_4                           11                             21
  CLUS_5                            2                             16
  CLUS_6                           21                             22
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       17     21     30     15
  AMP PEAK 12(8Q24.21) WILD-TYPE     51     55     33     31
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           17                             51
  CLUS_2                           21                             55
  CLUS_3                           30                             33
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       12      6     15     10     27      6
  AMP PEAK 12(8Q24.21) WILD-TYPE     35     16     34     18     32     23
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED        7
  AMP PEAK 12(8Q24.21) WILD-TYPE     12
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                            6                             16
  CLUS_3                           15                             34
  CLUS_4                           10                             18
  CLUS_5                           27                             32
  CLUS_6                            6                             23
  CLUS_7                            7                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       32     18     32
  AMP PEAK 12(8Q24.21) WILD-TYPE     77     29     67
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           32                             77
  CLUS_2                           18                             29
  CLUS_3                           32                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q24.21) MUTATED       28      9     41      4
  AMP PEAK 12(8Q24.21) WILD-TYPE     54     28     73     18
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           28                             54
  CLUS_2                            9                             28
  CLUS_3                           41                             73
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED       23     24     19
  AMP PEAK 12(8Q24.21) WILD-TYPE     62     40     26
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           23                             62
  CLUS_2                           24                             40
  CLUS_3                           19                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED        8      8     12     13      2      8
  AMP PEAK 12(8Q24.21) WILD-TYPE     16     24     25     10     10     15
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(8Q24.21) MUTATED        8      7
  AMP PEAK 12(8Q24.21) WILD-TYPE     13     15
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                            8                             24
  CLUS_3                           12                             25
  CLUS_4                           13                             10
  CLUS_5                            2                             10
  CLUS_6                            8                             15
  CLUS_7                            8                             13
  CLUS_8                            7                             15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        4      5      7      8      9      2
  AMP PEAK 13(11Q22.2) WILD-TYPE     22     53     36     43     25     42
                                vv
clus                             CLUS_7
  AMP PEAK 13(11Q22.2) MUTATED        1
  AMP PEAK 13(11Q22.2) WILD-TYPE      0
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            4                             22
  CLUS_2                            5                             53
  CLUS_3                            7                             36
  CLUS_4                            8                             43
  CLUS_5                            9                             25
  CLUS_6                            2                             42
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        7      6      3      2      1     12
  AMP PEAK 13(11Q22.2) WILD-TYPE     35     35     54     30     17     31
                                vv
clus                             CLUS_7
  AMP PEAK 13(11Q22.2) MUTATED        1
  AMP PEAK 13(11Q22.2) WILD-TYPE      4
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                            6                             35
  CLUS_3                            3                             54
  CLUS_4                            2                             30
  CLUS_5                            1                             17
  CLUS_6                           12                             31
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       13      4     14      5
  AMP PEAK 13(11Q22.2) WILD-TYPE     55     72     49     41
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           13                             55
  CLUS_2                            4                             72
  CLUS_3                           14                             49
  CLUS_4                            5                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED       10      3      2      3     14      2
  AMP PEAK 13(11Q22.2) WILD-TYPE     37     19     47     25     45     27
                                vv
clus                             CLUS_7
  AMP PEAK 13(11Q22.2) MUTATED        2
  AMP PEAK 13(11Q22.2) WILD-TYPE     17
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                            3                             19
  CLUS_3                            2                             47
  CLUS_4                            3                             25
  CLUS_5                           14                             45
  CLUS_6                            2                             27
  CLUS_7                            2                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       19      7     10
  AMP PEAK 13(11Q22.2) WILD-TYPE     90     40     89
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           19                             90
  CLUS_2                            7                             40
  CLUS_3                           10                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11Q22.2) MUTATED       19      7     10      0
  AMP PEAK 13(11Q22.2) WILD-TYPE     63     30    104     22
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                            7                             30
  CLUS_3                           10                            104
  CLUS_4                            0                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11Q22.2) MUTATED       14      7      7
  AMP PEAK 13(11Q22.2) WILD-TYPE     71     57     38
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                           14                             71
  CLUS_2                            7                             57
  CLUS_3                            7                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11Q22.2) MUTATED        1      8      3      4      1      3
  AMP PEAK 13(11Q22.2) WILD-TYPE     23     24     34     19     11     20
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(11Q22.2) MUTATED        7      1
  AMP PEAK 13(11Q22.2) WILD-TYPE     14     21
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q22.2) MUTATED AMP PEAK 13(11Q22.2) WILD-TYPE
  CLUS_1                            1                             23
  CLUS_2                            8                             24
  CLUS_3                            3                             34
  CLUS_4                            4                             19
  CLUS_5                            1                             11
  CLUS_6                            3                             20
  CLUS_7                            7                             14
  CLUS_8                            1                             21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED        9     19     41     11      7      7      0
  AMP PEAK 14(12Q15) WILD-TYPE     17     39      2     40     27     37      1
D14V1, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                          9                           17
  CLUS_2                         19                           39
  CLUS_3                         41                            2
  CLUS_4                         11                           40
  CLUS_5                          7                           27
  CLUS_6                          7                           37
  CLUS_7                          0                            1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED       27     25      1     13      2     14      2
  AMP PEAK 14(12Q15) WILD-TYPE     15     16     56     19     16     29      3
D14V2, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         27                           15
  CLUS_2                         25                           16
  CLUS_3                          1                           56
  CLUS_4                         13                           19
  CLUS_5                          2                           16
  CLUS_6                         14                           29
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       43      2     26     23
  AMP PEAK 14(12Q15) WILD-TYPE     25     74     37     23
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         43                           25
  CLUS_2                          2                           74
  CLUS_3                         26                           37
  CLUS_4                         23                           23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED       30     13      1     19     24      1      6
  AMP PEAK 14(12Q15) WILD-TYPE     17      9     48      9     35     28     13
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         30                           17
  CLUS_2                         13                            9
  CLUS_3                          1                           48
  CLUS_4                         19                            9
  CLUS_5                         24                           35
  CLUS_6                          1                           28
  CLUS_7                          6                           13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       58     23     11
  AMP PEAK 14(12Q15) WILD-TYPE     51     24     88
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         58                           51
  CLUS_2                         23                           24
  CLUS_3                         11                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q15) MUTATED       50     19     16      7
  AMP PEAK 14(12Q15) WILD-TYPE     32     18     98     15
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         50                           32
  CLUS_2                         19                           18
  CLUS_3                         16                           98
  CLUS_4                          7                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q15) MUTATED       48      7     20
  AMP PEAK 14(12Q15) WILD-TYPE     37     57     25
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                         48                           37
  CLUS_2                          7                           57
  CLUS_3                         20                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 14(12Q15) MUTATED        8     27      0     10      1     10     10
  AMP PEAK 14(12Q15) WILD-TYPE     16      5     37     13     11     13     11
                              vv
clus                           CLUS_8
  AMP PEAK 14(12Q15) MUTATED        9
  AMP PEAK 14(12Q15) WILD-TYPE     13
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q15) MUTATED AMP PEAK 14(12Q15) WILD-TYPE
  CLUS_1                          8                           16
  CLUS_2                         27                            5
  CLUS_3                          0                           37
  CLUS_4                         10                           13
  CLUS_5                          1                           11
  CLUS_6                         10                           13
  CLUS_7                         10                           11
  CLUS_8                          9                           13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED        7      4      5      8     11     19      0
  AMP PEAK 15(13Q34) WILD-TYPE     19     54     38     43     23     25      1
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          7                           19
  CLUS_2                          4                           54
  CLUS_3                          5                           38
  CLUS_4                          8                           43
  CLUS_5                         11                           23
  CLUS_6                         19                           25
  CLUS_7                          0                            1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       12      5     12      3      1     16      2
  AMP PEAK 15(13Q34) WILD-TYPE     30     36     45     29     17     27      3
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         12                           30
  CLUS_2                          5                           36
  CLUS_3                         12                           45
  CLUS_4                          3                           29
  CLUS_5                          1                           17
  CLUS_6                         16                           27
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       15     16     17      5
  AMP PEAK 15(13Q34) WILD-TYPE     53     60     46     41
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         15                           53
  CLUS_2                         16                           60
  CLUS_3                         17                           46
  CLUS_4                          5                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       13      1     10      6     17      6      0
  AMP PEAK 15(13Q34) WILD-TYPE     34     21     39     22     42     23     19
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         13                           34
  CLUS_2                          1                           21
  CLUS_3                         10                           39
  CLUS_4                          6                           22
  CLUS_5                         17                           42
  CLUS_6                          6                           23
  CLUS_7                          0                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       25     11     17
  AMP PEAK 15(13Q34) WILD-TYPE     84     36     82
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         25                           84
  CLUS_2                         11                           36
  CLUS_3                         17                           82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       21      9     22      1
  AMP PEAK 15(13Q34) WILD-TYPE     61     28     92     21
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         21                           61
  CLUS_2                          9                           28
  CLUS_3                         22                           92
  CLUS_4                          1                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       19     17     10
  AMP PEAK 15(13Q34) WILD-TYPE     66     47     35
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         19                           66
  CLUS_2                         17                           47
  CLUS_3                         10                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED       11      5      9      5      4      9      2
  AMP PEAK 15(13Q34) WILD-TYPE     13     27     28     18      8     14     19
                              vv
clus                           CLUS_8
  AMP PEAK 15(13Q34) MUTATED        1
  AMP PEAK 15(13Q34) WILD-TYPE     21
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         11                           13
  CLUS_2                          5                           27
  CLUS_3                          9                           28
  CLUS_4                          5                           18
  CLUS_5                          4                            8
  CLUS_6                          9                           14
  CLUS_7                          2                           19
  CLUS_8                          1                           21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       17      0     18     20     18     11
  AMP PEAK 16(15Q26.3) WILD-TYPE      9     58     25     31     16     33
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        0
  AMP PEAK 16(15Q26.3) WILD-TYPE      1
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           17                              9
  CLUS_2                            0                             58
  CLUS_3                           18                             25
  CLUS_4                           20                             31
  CLUS_5                           18                             16
  CLUS_6                           11                             33
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       19      9     23     10      0     16
  AMP PEAK 16(15Q26.3) WILD-TYPE     23     32     34     22     18     27
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        2
  AMP PEAK 16(15Q26.3) WILD-TYPE      3
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           19                             23
  CLUS_2                            9                             32
  CLUS_3                           23                             34
  CLUS_4                           10                             22
  CLUS_5                            0                             18
  CLUS_6                           16                             27
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       23     25     23     13
  AMP PEAK 16(15Q26.3) WILD-TYPE     45     51     40     33
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           23                             45
  CLUS_2                           25                             51
  CLUS_3                           23                             40
  CLUS_4                           13                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED       21      5     20      8     18      6
  AMP PEAK 16(15Q26.3) WILD-TYPE     26     17     29     20     41     23
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        6
  AMP PEAK 16(15Q26.3) WILD-TYPE     13
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            5                             17
  CLUS_3                           20                             29
  CLUS_4                            8                             20
  CLUS_5                           18                             41
  CLUS_6                            6                             23
  CLUS_7                            6                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       34     17     33
  AMP PEAK 16(15Q26.3) WILD-TYPE     75     30     66
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           34                             75
  CLUS_2                           17                             30
  CLUS_3                           33                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       34      9     36      5
  AMP PEAK 16(15Q26.3) WILD-TYPE     48     28     78     17
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           34                             48
  CLUS_2                            9                             28
  CLUS_3                           36                             78
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       30     24     18
  AMP PEAK 16(15Q26.3) WILD-TYPE     55     40     27
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           30                             55
  CLUS_2                           24                             40
  CLUS_3                           18                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED        6     15     15      7      4      8
  AMP PEAK 16(15Q26.3) WILD-TYPE     18     17     22     16      8     15
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 16(15Q26.3) MUTATED       10      7
  AMP PEAK 16(15Q26.3) WILD-TYPE     11     15
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                           15                             17
  CLUS_3                           15                             22
  CLUS_4                            7                             16
  CLUS_5                            4                              8
  CLUS_6                            8                             15
  CLUS_7                           10                             11
  CLUS_8                            7                             15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       10      4     12     21     34     20      1
  AMP PEAK 17(17P12) WILD-TYPE     16     54     31     30      0     24      0
D17V1, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         10                           16
  CLUS_2                          4                           54
  CLUS_3                         12                           31
  CLUS_4                         21                           30
  CLUS_5                         34                            0
  CLUS_6                         20                           24
  CLUS_7                          1                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       19      8     32      6      2     27      1
  AMP PEAK 17(17P12) WILD-TYPE     23     33     25     26     16     16      4
D17V2, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         19                           23
  CLUS_2                          8                           33
  CLUS_3                         32                           25
  CLUS_4                          6                           26
  CLUS_5                          2                           16
  CLUS_6                         27                           16
  CLUS_7                          1                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       26     36     30      9
  AMP PEAK 17(17P12) WILD-TYPE     42     40     33     37
D17V3, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         26                           42
  CLUS_2                         36                           40
  CLUS_3                         30                           33
  CLUS_4                          9                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       24      2     26     10     27     11      1
  AMP PEAK 17(17P12) WILD-TYPE     23     20     23     18     32     18     18
D17V4, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         24                           23
  CLUS_2                          2                           20
  CLUS_3                         26                           23
  CLUS_4                         10                           18
  CLUS_5                         27                           32
  CLUS_6                         11                           18
  CLUS_7                          1                           18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       38     18     44
  AMP PEAK 17(17P12) WILD-TYPE     71     29     55
D17V5, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         38                           71
  CLUS_2                         18                           29
  CLUS_3                         44                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17P12) MUTATED       32     17     50      1
  AMP PEAK 17(17P12) WILD-TYPE     50     20     64     21
D17V6, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         32                           50
  CLUS_2                         17                           20
  CLUS_3                         50                           64
  CLUS_4                          1                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17P12) MUTATED       28     34     18
  AMP PEAK 17(17P12) WILD-TYPE     57     30     27
D17V7, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         28                           57
  CLUS_2                         34                           30
  CLUS_3                         18                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(17P12) MUTATED       12      9     19     11      6     13      8
  AMP PEAK 17(17P12) WILD-TYPE     12     23     18     12      6     10     13
                              vv
clus                           CLUS_8
  AMP PEAK 17(17P12) MUTATED        2
  AMP PEAK 17(17P12) WILD-TYPE     20
D17V8, multiclass
        clus
vv       AMP PEAK 17(17P12) MUTATED AMP PEAK 17(17P12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                          9                           23
  CLUS_3                         19                           18
  CLUS_4                         11                           12
  CLUS_5                          6                            6
  CLUS_6                         13                           10
  CLUS_7                          8                           13
  CLUS_8                          2                           20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       12      4     11     21     33     22
  AMP PEAK 18(17P11.2) WILD-TYPE     14     54     32     30      1     22
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED        1
  AMP PEAK 18(17P11.2) WILD-TYPE      0
D18V1, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                            4                             54
  CLUS_3                           11                             32
  CLUS_4                           21                             30
  CLUS_5                           33                              1
  CLUS_6                           22                             22
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       20      7     30      7      1     30
  AMP PEAK 18(17P11.2) WILD-TYPE     22     34     27     25     17     13
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED        1
  AMP PEAK 18(17P11.2) WILD-TYPE      4
D18V2, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           20                             22
  CLUS_2                            7                             34
  CLUS_3                           30                             27
  CLUS_4                            7                             25
  CLUS_5                            1                             17
  CLUS_6                           30                             13
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       28     33     33      9
  AMP PEAK 18(17P11.2) WILD-TYPE     40     43     30     37
D18V3, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           28                             40
  CLUS_2                           33                             43
  CLUS_3                           33                             30
  CLUS_4                            9                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       24      5     24      8     30     10
  AMP PEAK 18(17P11.2) WILD-TYPE     23     17     25     20     29     19
                                vv
clus                             CLUS_7
  AMP PEAK 18(17P11.2) MUTATED        2
  AMP PEAK 18(17P11.2) WILD-TYPE     17
D18V4, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                            5                             17
  CLUS_3                           24                             25
  CLUS_4                            8                             20
  CLUS_5                           30                             29
  CLUS_6                           10                             19
  CLUS_7                            2                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       41     19     42
  AMP PEAK 18(17P11.2) WILD-TYPE     68     28     57
D18V5, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           41                             68
  CLUS_2                           19                             28
  CLUS_3                           42                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17P11.2) MUTATED       35     16     50      1
  AMP PEAK 18(17P11.2) WILD-TYPE     47     21     64     21
D18V6, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           35                             47
  CLUS_2                           16                             21
  CLUS_3                           50                             64
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17P11.2) MUTATED       29     33     21
  AMP PEAK 18(17P11.2) WILD-TYPE     56     31     24
D18V7, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           33                             31
  CLUS_3                           21                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(17P11.2) MUTATED       14      8     16     13      6     14
  AMP PEAK 18(17P11.2) WILD-TYPE     10     24     21     10      6      9
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 18(17P11.2) MUTATED        9      3
  AMP PEAK 18(17P11.2) WILD-TYPE     12     19
D18V8, multiclass
        clus
vv       AMP PEAK 18(17P11.2) MUTATED AMP PEAK 18(17P11.2) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                            8                             24
  CLUS_3                           16                             21
  CLUS_4                           13                             10
  CLUS_5                            6                              6
  CLUS_6                           14                              9
  CLUS_7                            9                             12
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED        7      6     13     20     12     21
  AMP PEAK 19(17Q24.3) WILD-TYPE     19     52     30     31     22     23
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.3) MUTATED        0
  AMP PEAK 19(17Q24.3) WILD-TYPE      1
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                            6                             52
  CLUS_3                           13                             30
  CLUS_4                           20                             31
  CLUS_5                           12                             22
  CLUS_6                           21                             23
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       15      9     10      9      4     18
  AMP PEAK 19(17Q24.3) WILD-TYPE     27     32     47     23     14     25
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.3) MUTATED        5
  AMP PEAK 19(17Q24.3) WILD-TYPE      0
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                            9                             32
  CLUS_3                           10                             47
  CLUS_4                            9                             23
  CLUS_5                            4                             14
  CLUS_6                           18                             25
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       19     17     27     15
  AMP PEAK 19(17Q24.3) WILD-TYPE     49     59     36     31
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           19                             49
  CLUS_2                           17                             59
  CLUS_3                           27                             36
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       17      4      5     10     23     13
  AMP PEAK 19(17Q24.3) WILD-TYPE     30     18     44     18     36     16
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.3) MUTATED        6
  AMP PEAK 19(17Q24.3) WILD-TYPE     13
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                            4                             18
  CLUS_3                            5                             44
  CLUS_4                           10                             18
  CLUS_5                           23                             36
  CLUS_6                           13                             16
  CLUS_7                            6                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       33     20     25
  AMP PEAK 19(17Q24.3) WILD-TYPE     76     27     74
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           33                             76
  CLUS_2                           20                             27
  CLUS_3                           25                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.3) MUTATED       28     16     29      5
  AMP PEAK 19(17Q24.3) WILD-TYPE     54     21     85     17
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           28                             54
  CLUS_2                           16                             21
  CLUS_3                           29                             85
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.3) MUTATED       24     22     22
  AMP PEAK 19(17Q24.3) WILD-TYPE     61     42     23
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           22                             42
  CLUS_3                           22                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.3) MUTATED       12     10     10     11      4      5
  AMP PEAK 19(17Q24.3) WILD-TYPE     12     22     27     12      8     18
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 19(17Q24.3) MUTATED       10      6
  AMP PEAK 19(17Q24.3) WILD-TYPE     11     16
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q24.3) MUTATED AMP PEAK 19(17Q24.3) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           10                             22
  CLUS_3                           10                             27
  CLUS_4                           11                             12
  CLUS_5                            4                              8
  CLUS_6                            5                             18
  CLUS_7                           10                             11
  CLUS_8                            6                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       17      6     25     21     15     23
  AMP PEAK 20(19P13.2) WILD-TYPE      9     52     18     30     19     21
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        0
  AMP PEAK 20(19P13.2) WILD-TYPE      1
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           17                              9
  CLUS_2                            6                             52
  CLUS_3                           25                             18
  CLUS_4                           21                             30
  CLUS_5                           15                             19
  CLUS_6                           23                             21
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       27     14     25      8      5     19
  AMP PEAK 20(19P13.2) WILD-TYPE     15     27     32     24     13     24
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        2
  AMP PEAK 20(19P13.2) WILD-TYPE      3
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           27                             15
  CLUS_2                           14                             27
  CLUS_3                           25                             32
  CLUS_4                            8                             24
  CLUS_5                            5                             13
  CLUS_6                           19                             24
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       37     32     23     15
  AMP PEAK 20(19P13.2) WILD-TYPE     31     44     40     31
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           37                             31
  CLUS_2                           32                             44
  CLUS_3                           23                             40
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       29     10     21     12     18     12
  AMP PEAK 20(19P13.2) WILD-TYPE     18     12     28     16     41     17
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED        5
  AMP PEAK 20(19P13.2) WILD-TYPE     14
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           29                             18
  CLUS_2                           10                             12
  CLUS_3                           21                             28
  CLUS_4                           12                             16
  CLUS_5                           18                             41
  CLUS_6                           12                             17
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       44     18     44
  AMP PEAK 20(19P13.2) WILD-TYPE     65     29     55
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           44                             65
  CLUS_2                           18                             29
  CLUS_3                           44                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       37     17     47      5
  AMP PEAK 20(19P13.2) WILD-TYPE     45     20     67     17
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           37                             45
  CLUS_2                           17                             20
  CLUS_3                           47                             67
  CLUS_4                            5                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       35     25     19
  AMP PEAK 20(19P13.2) WILD-TYPE     50     39     26
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           35                             50
  CLUS_2                           25                             39
  CLUS_3                           19                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED       12     20     15      8      4      6
  AMP PEAK 20(19P13.2) WILD-TYPE     12     12     22     15      8     17
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 20(19P13.2) MUTATED        9      5
  AMP PEAK 20(19P13.2) WILD-TYPE     12     17
D20V8, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           20                             12
  CLUS_3                           15                             22
  CLUS_4                            8                             15
  CLUS_5                            4                              8
  CLUS_6                            6                             17
  CLUS_7                            9                             12
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       17      2     20      7     21     26      0
  AMP PEAK 21(19Q12) WILD-TYPE      9     56     23     44     13     18      1
D21V1, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         17                            9
  CLUS_2                          2                           56
  CLUS_3                         20                           23
  CLUS_4                          7                           44
  CLUS_5                         21                           13
  CLUS_6                         26                           18
  CLUS_7                          0                            1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       23     10     15      8      2     25      2
  AMP PEAK 21(19Q12) WILD-TYPE     19     31     42     24     16     18      3
D21V2, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         23                           19
  CLUS_2                         10                           31
  CLUS_3                         15                           42
  CLUS_4                          8                           24
  CLUS_5                          2                           16
  CLUS_6                         25                           18
  CLUS_7                          2                            3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       31     19     28     15
  AMP PEAK 21(19Q12) WILD-TYPE     37     57     35     31
D21V3, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         31                           37
  CLUS_2                         19                           57
  CLUS_3                         28                           35
  CLUS_4                         15                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       28      7     13     11     24      6      4
  AMP PEAK 21(19Q12) WILD-TYPE     19     15     36     17     35     23     15
D21V4, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         28                           19
  CLUS_2                          7                           15
  CLUS_3                         13                           36
  CLUS_4                         11                           17
  CLUS_5                         24                           35
  CLUS_6                          6                           23
  CLUS_7                          4                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       43     16     34
  AMP PEAK 21(19Q12) WILD-TYPE     66     31     65
D21V5, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         43                           66
  CLUS_2                         16                           31
  CLUS_3                         34                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       38     14     39      2
  AMP PEAK 21(19Q12) WILD-TYPE     44     23     75     20
D21V6, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         38                           44
  CLUS_2                         14                           23
  CLUS_3                         39                           75
  CLUS_4                          2                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       35     23     16
  AMP PEAK 21(19Q12) WILD-TYPE     50     41     29
D21V7, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         35                           50
  CLUS_2                         23                           41
  CLUS_3                         16                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       12     17      9     12      2     10      8
  AMP PEAK 21(19Q12) WILD-TYPE     12     15     28     11     10     13     13
                              vv
clus                           CLUS_8
  AMP PEAK 21(19Q12) MUTATED        4
  AMP PEAK 21(19Q12) WILD-TYPE     18
D21V8, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         12                           12
  CLUS_2                         17                           15
  CLUS_3                          9                           28
  CLUS_4                         12                           11
  CLUS_5                          2                           10
  CLUS_6                         10                           13
  CLUS_7                          8                           13
  CLUS_8                          4                           18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       18      6     22     19     15     18
  AMP PEAK 22(20Q13.33) WILD-TYPE      8     52     21     32     19     26
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q13.33) MUTATED        0
  AMP PEAK 22(20Q13.33) WILD-TYPE      1
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            18                               8
  CLUS_2                             6                              52
  CLUS_3                            22                              21
  CLUS_4                            19                              32
  CLUS_5                            15                              19
  CLUS_6                            18                              26
  CLUS_7                             0                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       25     12     13     10      3     27
  AMP PEAK 22(20Q13.33) WILD-TYPE     17     29     44     22     15     16
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q13.33) MUTATED        1
  AMP PEAK 22(20Q13.33) WILD-TYPE      4
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            25                              17
  CLUS_2                            12                              29
  CLUS_3                            13                              44
  CLUS_4                            10                              22
  CLUS_5                             3                              15
  CLUS_6                            27                              16
  CLUS_7                             1                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       29     16     37     15
  AMP PEAK 22(20Q13.33) WILD-TYPE     39     60     26     31
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            29                              39
  CLUS_2                            16                              60
  CLUS_3                            37                              26
  CLUS_4                            15                              31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       25      7     10     14     30      6
  AMP PEAK 22(20Q13.33) WILD-TYPE     22     15     39     14     29     23
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q13.33) MUTATED        5
  AMP PEAK 22(20Q13.33) WILD-TYPE     14
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            25                              22
  CLUS_2                             7                              15
  CLUS_3                            10                              39
  CLUS_4                            14                              14
  CLUS_5                            30                              29
  CLUS_6                             6                              23
  CLUS_7                             5                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       45     24     29
  AMP PEAK 22(20Q13.33) WILD-TYPE     64     23     70
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            45                              64
  CLUS_2                            24                              23
  CLUS_3                            29                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       43     15     38      2
  AMP PEAK 22(20Q13.33) WILD-TYPE     39     22     76     20
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            43                              39
  CLUS_2                            15                              22
  CLUS_3                            38                              76
  CLUS_4                             2                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       33     21     27
  AMP PEAK 22(20Q13.33) WILD-TYPE     52     43     18
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            33                              52
  CLUS_2                            21                              43
  CLUS_3                            27                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q13.33) MUTATED       12     15      8     12      4     11
  AMP PEAK 22(20Q13.33) WILD-TYPE     12     17     29     11      8     12
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 22(20Q13.33) MUTATED       14      5
  AMP PEAK 22(20Q13.33) WILD-TYPE      7     17
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            12                              12
  CLUS_2                            15                              17
  CLUS_3                             8                              29
  CLUS_4                            12                              11
  CLUS_5                             4                               8
  CLUS_6                            11                              12
  CLUS_7                            14                               7
  CLUS_8                             5                              17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       19      7     12      5     16     14
  AMP PEAK 23(21Q21.1) WILD-TYPE      7     51     31     46     18     30
                                vv
clus                             CLUS_7
  AMP PEAK 23(21Q21.1) MUTATED        0
  AMP PEAK 23(21Q21.1) WILD-TYPE      1
D23V1, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           19                              7
  CLUS_2                            7                             51
  CLUS_3                           12                             31
  CLUS_4                            5                             46
  CLUS_5                           16                             18
  CLUS_6                           14                             30
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       18      6     14      6      1     20
  AMP PEAK 23(21Q21.1) WILD-TYPE     24     35     43     26     17     23
                                vv
clus                             CLUS_7
  AMP PEAK 23(21Q21.1) MUTATED        2
  AMP PEAK 23(21Q21.1) WILD-TYPE      3
D23V2, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           18                             24
  CLUS_2                            6                             35
  CLUS_3                           14                             43
  CLUS_4                            6                             26
  CLUS_5                            1                             17
  CLUS_6                           20                             23
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       24     17     23      9
  AMP PEAK 23(21Q21.1) WILD-TYPE     44     59     40     37
D23V3, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           24                             44
  CLUS_2                           17                             59
  CLUS_3                           23                             40
  CLUS_4                            9                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED       19      5     11      8     21      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     28     17     38     20     38     23
                                vv
clus                             CLUS_7
  AMP PEAK 23(21Q21.1) MUTATED        3
  AMP PEAK 23(21Q21.1) WILD-TYPE     16
D23V4, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           19                             28
  CLUS_2                            5                             17
  CLUS_3                           11                             38
  CLUS_4                            8                             20
  CLUS_5                           21                             38
  CLUS_6                            6                             23
  CLUS_7                            3                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       35     10     27
  AMP PEAK 23(21Q21.1) WILD-TYPE     74     37     72
D23V5, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           35                             74
  CLUS_2                           10                             37
  CLUS_3                           27                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(21Q21.1) MUTATED       30     10     29      3
  AMP PEAK 23(21Q21.1) WILD-TYPE     52     27     85     19
D23V6, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           30                             52
  CLUS_2                           10                             27
  CLUS_3                           29                             85
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(21Q21.1) MUTATED       23     19     16
  AMP PEAK 23(21Q21.1) WILD-TYPE     62     45     29
D23V7, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                           23                             62
  CLUS_2                           19                             45
  CLUS_3                           16                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(21Q21.1) MUTATED        8     12      8     10      4      6
  AMP PEAK 23(21Q21.1) WILD-TYPE     16     20     29     13      8     17
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 23(21Q21.1) MUTATED        7      3
  AMP PEAK 23(21Q21.1) WILD-TYPE     14     19
D23V8, multiclass
        clus
vv       AMP PEAK 23(21Q21.1) MUTATED AMP PEAK 23(21Q21.1) WILD-TYPE
  CLUS_1                            8                             16
  CLUS_2                           12                             20
  CLUS_3                            8                             29
  CLUS_4                           10                             13
  CLUS_5                            4                              8
  CLUS_6                            6                             17
  CLUS_7                            7                             14
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XP21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       14      7     20      9     27     20
  AMP PEAK 24(XP21.2) WILD-TYPE     12     51     23     42      7     24
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP21.2) MUTATED        0
  AMP PEAK 24(XP21.2) WILD-TYPE      1
D24V1, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                           7                            51
  CLUS_3                          20                            23
  CLUS_4                           9                            42
  CLUS_5                          27                             7
  CLUS_6                          20                            24
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       26     10     23      7      2     19
  AMP PEAK 24(XP21.2) WILD-TYPE     16     31     34     25     16     24
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP21.2) MUTATED        3
  AMP PEAK 24(XP21.2) WILD-TYPE      2
D24V2, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          26                            16
  CLUS_2                          10                            31
  CLUS_3                          23                            34
  CLUS_4                           7                            25
  CLUS_5                           2                            16
  CLUS_6                          19                            24
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       33     28     24     12
  AMP PEAK 24(XP21.2) WILD-TYPE     35     48     39     34
D24V3, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          33                            35
  CLUS_2                          28                            48
  CLUS_3                          24                            39
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       26      5     21     12     24      7
  AMP PEAK 24(XP21.2) WILD-TYPE     21     17     28     16     35     22
                               vv
clus                            CLUS_7
  AMP PEAK 24(XP21.2) MUTATED        2
  AMP PEAK 24(XP21.2) WILD-TYPE     17
D24V4, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                           5                            17
  CLUS_3                          21                            28
  CLUS_4                          12                            16
  CLUS_5                          24                            35
  CLUS_6                           7                            22
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       39     18     38
  AMP PEAK 24(XP21.2) WILD-TYPE     70     29     61
D24V5, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          39                            70
  CLUS_2                          18                            29
  CLUS_3                          38                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(XP21.2) MUTATED       36     11     45      3
  AMP PEAK 24(XP21.2) WILD-TYPE     46     26     69     19
D24V6, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          36                            46
  CLUS_2                          11                            26
  CLUS_3                          45                            69
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XP21.2) MUTATED       30     25     22
  AMP PEAK 24(XP21.2) WILD-TYPE     55     39     23
D24V7, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          30                            55
  CLUS_2                          25                            39
  CLUS_3                          22                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(XP21.2) MUTATED       13     18     13     12      4      7
  AMP PEAK 24(XP21.2) WILD-TYPE     11     14     24     11      8     16
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 24(XP21.2) MUTATED        8      2
  AMP PEAK 24(XP21.2) WILD-TYPE     13     20
D24V8, multiclass
        clus
vv       AMP PEAK 24(XP21.2) MUTATED AMP PEAK 24(XP21.2) WILD-TYPE
  CLUS_1                          13                            11
  CLUS_2                          18                            14
  CLUS_3                          13                            24
  CLUS_4                          12                            11
  CLUS_5                           4                             8
  CLUS_6                           7                            16
  CLUS_7                           8                            13
  CLUS_8                           2                            20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED       10      3     16      5      5      7
  AMP PEAK 25(XQ21.1) WILD-TYPE     16     55     27     46     29     37
                               vv
clus                            CLUS_7
  AMP PEAK 25(XQ21.1) MUTATED        0
  AMP PEAK 25(XQ21.1) WILD-TYPE      1
D25V1, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          10                            16
  CLUS_2                           3                            55
  CLUS_3                          16                            27
  CLUS_4                           5                            46
  CLUS_5                           5                            29
  CLUS_6                           7                            37
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED       15      4      4      6      1     11
  AMP PEAK 25(XQ21.1) WILD-TYPE     27     37     53     26     17     32
                               vv
clus                            CLUS_7
  AMP PEAK 25(XQ21.1) MUTATED        3
  AMP PEAK 25(XQ21.1) WILD-TYPE      2
D25V2, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          15                            27
  CLUS_2                           4                            37
  CLUS_3                           4                            53
  CLUS_4                           6                            26
  CLUS_5                           1                            17
  CLUS_6                          11                            32
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       19      8     13      6
  AMP PEAK 25(XQ21.1) WILD-TYPE     49     68     50     40
D25V3, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            49
  CLUS_2                           8                            68
  CLUS_3                          13                            50
  CLUS_4                           6                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED       16      2      3      4     13      5
  AMP PEAK 25(XQ21.1) WILD-TYPE     31     20     46     24     46     24
                               vv
clus                            CLUS_7
  AMP PEAK 25(XQ21.1) MUTATED        3
  AMP PEAK 25(XQ21.1) WILD-TYPE     16
D25V4, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          16                            31
  CLUS_2                           2                            20
  CLUS_3                           3                            46
  CLUS_4                           4                            24
  CLUS_5                          13                            46
  CLUS_6                           5                            24
  CLUS_7                           3                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       19     13     13
  AMP PEAK 25(XQ21.1) WILD-TYPE     90     34     86
D25V5, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            90
  CLUS_2                          13                            34
  CLUS_3                          13                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(XQ21.1) MUTATED       19      7     16      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     63     30     98     19
D25V6, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            63
  CLUS_2                           7                            30
  CLUS_3                          16                            98
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED       19     10      9
  AMP PEAK 25(XQ21.1) WILD-TYPE     66     54     36
D25V7, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          10                            54
  CLUS_3                           9                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(XQ21.1) MUTATED        6      8      6      6      0      5
  AMP PEAK 25(XQ21.1) WILD-TYPE     18     24     31     17     12     18
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK 25(XQ21.1) MUTATED        4      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     17     19
D25V8, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           8                            24
  CLUS_3                           6                            31
  CLUS_4                           6                            17
  CLUS_5                           0                            12
  CLUS_6                           5                            18
  CLUS_7                           4                            17
  CLUS_8                           3                            19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        7      3      5     30     12     11
  DEL PEAK  1(1P36.32) WILD-TYPE     19     55     38     21     22     33
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        1
  DEL PEAK  1(1P36.32) WILD-TYPE      0
D26V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                            3                             55
  CLUS_3                            5                             38
  CLUS_4                           30                             21
  CLUS_5                           12                             22
  CLUS_6                           11                             33
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        8      1     36      8      6      5
  DEL PEAK  1(1P36.32) WILD-TYPE     34     40     21     24     12     38
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        3
  DEL PEAK  1(1P36.32) WILD-TYPE      2
D26V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            1                             40
  CLUS_3                           36                             21
  CLUS_4                            8                             24
  CLUS_5                            6                             12
  CLUS_6                            5                             38
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        9     44      7      8
  DEL PEAK  1(1P36.32) WILD-TYPE     59     32     56     38
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             59
  CLUS_2                           44                             32
  CLUS_3                            7                             56
  CLUS_4                            8                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        8      1     30      3      6     15
  DEL PEAK  1(1P36.32) WILD-TYPE     39     21     19     25     53     14
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        5
  DEL PEAK  1(1P36.32) WILD-TYPE     14
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                            1                             21
  CLUS_3                           30                             19
  CLUS_4                            3                             25
  CLUS_5                            6                             53
  CLUS_6                           15                             14
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       14      6     49
  DEL PEAK  1(1P36.32) WILD-TYPE     95     41     50
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           14                             95
  CLUS_2                            6                             41
  CLUS_3                           49                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11      3     51      4
  DEL PEAK  1(1P36.32) WILD-TYPE     71     34     63     18
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                             71
  CLUS_2                            3                             34
  CLUS_3                           51                             63
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       14     31      4
  DEL PEAK  1(1P36.32) WILD-TYPE     71     33     41
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           14                             71
  CLUS_2                           31                             33
  CLUS_3                            4                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        4      5     18      4      8      2
  DEL PEAK  1(1P36.32) WILD-TYPE     20     27     19     19      4     21
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.32) MUTATED        3      5
  DEL PEAK  1(1P36.32) WILD-TYPE     18     17
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            5                             27
  CLUS_3                           18                             19
  CLUS_4                            4                             19
  CLUS_5                            8                              4
  CLUS_6                            2                             21
  CLUS_7                            3                             18
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  2(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED        9      5     18     12     16     20      0
  DEL PEAK  2(1Q44) WILD-TYPE     17     53     25     39     18     24      1
D27V1, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         9                          17
  CLUS_2                         5                          53
  CLUS_3                        18                          25
  CLUS_4                        12                          39
  CLUS_5                        16                          18
  CLUS_6                        20                          24
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       23     10     10      3      2     22      2
  DEL PEAK  2(1Q44) WILD-TYPE     19     31     47     29     16     21      3
D27V2, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        23                          19
  CLUS_2                        10                          31
  CLUS_3                        10                          47
  CLUS_4                         3                          29
  CLUS_5                         2                          16
  CLUS_6                        22                          21
  CLUS_7                         2                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       32     13     27      8
  DEL PEAK  2(1Q44) WILD-TYPE     36     63     36     38
D27V3, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        32                          36
  CLUS_2                        13                          63
  CLUS_3                        27                          36
  CLUS_4                         8                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       27      6     10      8     24      3      2
  DEL PEAK  2(1Q44) WILD-TYPE     20     16     39     20     35     26     17
D27V4, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        27                          20
  CLUS_2                         6                          16
  CLUS_3                        10                          39
  CLUS_4                         8                          20
  CLUS_5                        24                          35
  CLUS_6                         3                          26
  CLUS_7                         2                          17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       35     22     23
  DEL PEAK  2(1Q44) WILD-TYPE     74     25     76
D27V5, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        35                          74
  CLUS_2                        22                          25
  CLUS_3                        23                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       36     11     31      2
  DEL PEAK  2(1Q44) WILD-TYPE     46     26     83     20
D27V6, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        36                          46
  CLUS_2                        11                          26
  CLUS_3                        31                          83
  CLUS_4                         2                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       29     18     21
  DEL PEAK  2(1Q44) WILD-TYPE     56     46     24
D27V7, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        29                          56
  CLUS_2                        18                          46
  CLUS_3                        21                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1Q44) MUTATED       11     16      9     11      1      9      9
  DEL PEAK  2(1Q44) WILD-TYPE     13     16     28     12     11     14     12
                             vv
clus                          CLUS_8
  DEL PEAK  2(1Q44) MUTATED        2
  DEL PEAK  2(1Q44) WILD-TYPE     20
D27V8, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        11                          13
  CLUS_2                        16                          16
  CLUS_3                         9                          28
  CLUS_4                        11                          12
  CLUS_5                         1                          11
  CLUS_6                         9                          14
  CLUS_7                         9                          12
  CLUS_8                         2                          20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       16      5      9     20     21     23
  DEL PEAK  3(2P25.3) WILD-TYPE     10     53     34     31     13     21
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        0
  DEL PEAK  3(2P25.3) WILD-TYPE      1
D28V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                           5                            53
  CLUS_3                           9                            34
  CLUS_4                          20                            31
  CLUS_5                          21                            13
  CLUS_6                          23                            21
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       18      7     33      3      6     15
  DEL PEAK  3(2P25.3) WILD-TYPE     24     34     24     29     12     28
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        3
  DEL PEAK  3(2P25.3) WILD-TYPE      2
D28V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          18                            24
  CLUS_2                           7                            34
  CLUS_3                          33                            24
  CLUS_4                           3                            29
  CLUS_5                           6                            12
  CLUS_6                          15                            28
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       26     42     21      4
  DEL PEAK  3(2P25.3) WILD-TYPE     42     34     42     42
D28V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          26                            42
  CLUS_2                          42                            34
  CLUS_3                          21                            42
  CLUS_4                           4                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED       20      5     28      6     18     14
  DEL PEAK  3(2P25.3) WILD-TYPE     27     17     21     22     41     15
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.3) MUTATED        2
  DEL PEAK  3(2P25.3) WILD-TYPE     17
D28V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          20                            27
  CLUS_2                           5                            17
  CLUS_3                          28                            21
  CLUS_4                           6                            22
  CLUS_5                          18                            41
  CLUS_6                          14                            15
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       25     20     48
  DEL PEAK  3(2P25.3) WILD-TYPE     84     27     51
D28V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          25                            84
  CLUS_2                          20                            27
  CLUS_3                          48                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED       27     10     56      0
  DEL PEAK  3(2P25.3) WILD-TYPE     55     27     58     22
D28V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          27                            55
  CLUS_2                          10                            27
  CLUS_3                          56                            58
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       19     35     19
  DEL PEAK  3(2P25.3) WILD-TYPE     66     29     26
D28V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          35                            29
  CLUS_3                          19                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        9     12     23     10      6      5
  DEL PEAK  3(2P25.3) WILD-TYPE     15     20     14     13      6     18
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2P25.3) MUTATED        7      1
  DEL PEAK  3(2P25.3) WILD-TYPE     14     21
D28V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           9                            15
  CLUS_2                          12                            20
  CLUS_3                          23                            14
  CLUS_4                          10                            13
  CLUS_5                           6                             6
  CLUS_6                           5                            18
  CLUS_7                           7                            14
  CLUS_8                           1                            21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       16      8     12     10     22     39
  DEL PEAK  4(2Q37.3) WILD-TYPE     10     50     31     41     12      5
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        1
  DEL PEAK  4(2Q37.3) WILD-TYPE      0
D29V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                           8                            50
  CLUS_3                          12                            31
  CLUS_4                          10                            41
  CLUS_5                          22                            12
  CLUS_6                          39                             5
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       25     10     24      7      7     22
  DEL PEAK  4(2Q37.3) WILD-TYPE     17     31     33     25     11     21
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        2
  DEL PEAK  4(2Q37.3) WILD-TYPE      3
D29V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          25                            17
  CLUS_2                          10                            31
  CLUS_3                          24                            33
  CLUS_4                           7                            25
  CLUS_5                           7                            11
  CLUS_6                          22                            21
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       33     34     29     10
  DEL PEAK  4(2Q37.3) WILD-TYPE     35     42     34     36
D29V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          33                            35
  CLUS_2                          34                            42
  CLUS_3                          29                            34
  CLUS_4                          10                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       27      6     16      9     27     19
  DEL PEAK  4(2Q37.3) WILD-TYPE     20     16     33     19     32     10
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        2
  DEL PEAK  4(2Q37.3) WILD-TYPE     17
D29V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          27                            20
  CLUS_2                           6                            16
  CLUS_3                          16                            33
  CLUS_4                           9                            19
  CLUS_5                          27                            32
  CLUS_6                          19                            10
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       39     23     45
  DEL PEAK  4(2Q37.3) WILD-TYPE     70     24     54
D29V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          39                            70
  CLUS_2                          23                            24
  CLUS_3                          45                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       39     11     54      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     43     26     60     19
D29V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          39                            43
  CLUS_2                          11                            26
  CLUS_3                          54                            60
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       29     32     24
  DEL PEAK  4(2Q37.3) WILD-TYPE     56     32     21
D29V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          29                            56
  CLUS_2                          32                            32
  CLUS_3                          24                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       12     16     15     15      7      7
  DEL PEAK  4(2Q37.3) WILD-TYPE     12     16     22      8      5     16
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  4(2Q37.3) MUTATED        9      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     12     18
D29V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                          16                            16
  CLUS_3                          15                            22
  CLUS_4                          15                             8
  CLUS_5                           7                             5
  CLUS_6                           7                            16
  CLUS_7                           9                            12
  CLUS_8                           4                            18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       16      7     14     11     22     39
  DEL PEAK  5(2Q37.3) WILD-TYPE     10     51     29     40     12      5
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        1
  DEL PEAK  5(2Q37.3) WILD-TYPE      0
D30V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                           7                            51
  CLUS_3                          14                            29
  CLUS_4                          11                            40
  CLUS_5                          22                            12
  CLUS_6                          39                             5
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       27      9     24      8      7     23
  DEL PEAK  5(2Q37.3) WILD-TYPE     15     32     33     24     11     20
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        2
  DEL PEAK  5(2Q37.3) WILD-TYPE      3
D30V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          27                            15
  CLUS_2                           9                            32
  CLUS_3                          24                            33
  CLUS_4                           8                            24
  CLUS_5                           7                            11
  CLUS_6                          23                            20
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       36     34     28     10
  DEL PEAK  5(2Q37.3) WILD-TYPE     32     42     35     36
D30V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          36                            32
  CLUS_2                          34                            42
  CLUS_3                          28                            35
  CLUS_4                          10                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       29      6     16      9     26     19
  DEL PEAK  5(2Q37.3) WILD-TYPE     18     16     33     19     33     10
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        3
  DEL PEAK  5(2Q37.3) WILD-TYPE     16
D30V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          29                            18
  CLUS_2                           6                            16
  CLUS_3                          16                            33
  CLUS_4                           9                            19
  CLUS_5                          26                            33
  CLUS_6                          19                            10
  CLUS_7                           3                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       43     22     44
  DEL PEAK  5(2Q37.3) WILD-TYPE     66     25     55
D30V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          43                            66
  CLUS_2                          22                            25
  CLUS_3                          44                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       41     12     52      4
  DEL PEAK  5(2Q37.3) WILD-TYPE     41     25     62     18
D30V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          41                            41
  CLUS_2                          12                            25
  CLUS_3                          52                            62
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       34     29     23
  DEL PEAK  5(2Q37.3) WILD-TYPE     51     35     22
D30V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          34                            51
  CLUS_2                          29                            35
  CLUS_3                          23                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       12     18     14     14      6      8
  DEL PEAK  5(2Q37.3) WILD-TYPE     12     14     23      9      6     15
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  5(2Q37.3) MUTATED        9      5
  DEL PEAK  5(2Q37.3) WILD-TYPE     12     17
D30V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          12                            12
  CLUS_2                          18                            14
  CLUS_3                          14                            23
  CLUS_4                          14                             9
  CLUS_5                           6                             6
  CLUS_6                           8                            15
  CLUS_7                           9                            12
  CLUS_8                           5                            17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  6(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED        9      9     12      9      6     20
  DEL PEAK  6(3P21.31) WILD-TYPE     17     49     31     42     28     24
                                vv
clus                             CLUS_7
  DEL PEAK  6(3P21.31) MUTATED        0
  DEL PEAK  6(3P21.31) WILD-TYPE      1
D31V1, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                            9                             49
  CLUS_3                           12                             31
  CLUS_4                            9                             42
  CLUS_5                            6                             28
  CLUS_6                           20                             24
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       21      5      2     10      2     13
  DEL PEAK  6(3P21.31) WILD-TYPE     21     36     55     22     16     30
                                vv
clus                             CLUS_7
  DEL PEAK  6(3P21.31) MUTATED        1
  DEL PEAK  6(3P21.31) WILD-TYPE      4
D31V2, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           21                             21
  CLUS_2                            5                             36
  CLUS_3                            2                             55
  CLUS_4                           10                             22
  CLUS_5                            2                             16
  CLUS_6                           13                             30
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       28      4     15     18
  DEL PEAK  6(3P21.31) WILD-TYPE     40     72     48     28
D31V3, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           28                             40
  CLUS_2                            4                             72
  CLUS_3                           15                             48
  CLUS_4                           18                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       23      5      2      9     13      3
  DEL PEAK  6(3P21.31) WILD-TYPE     24     17     47     19     46     26
                                vv
clus                             CLUS_7
  DEL PEAK  6(3P21.31) MUTATED       10
  DEL PEAK  6(3P21.31) WILD-TYPE      9
D31V4, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           23                             24
  CLUS_2                            5                             17
  CLUS_3                            2                             47
  CLUS_4                            9                             19
  CLUS_5                           13                             46
  CLUS_6                            3                             26
  CLUS_7                           10                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       39     14     12
  DEL PEAK  6(3P21.31) WILD-TYPE     70     33     87
D31V5, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           39                             70
  CLUS_2                           14                             33
  CLUS_3                           12                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P21.31) MUTATED       29     10     18      8
  DEL PEAK  6(3P21.31) WILD-TYPE     53     27     96     14
D31V6, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           29                             53
  CLUS_2                           10                             27
  CLUS_3                           18                             96
  CLUS_4                            8                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P21.31) MUTATED       31      8     16
  DEL PEAK  6(3P21.31) WILD-TYPE     54     56     29
D31V7, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                            8                             56
  CLUS_3                           16                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P21.31) MUTATED       12     14      0      8      2      4
  DEL PEAK  6(3P21.31) WILD-TYPE     12     18     37     15     10     19
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  6(3P21.31) MUTATED        5     10
  DEL PEAK  6(3P21.31) WILD-TYPE     16     12
D31V8, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           14                             18
  CLUS_3                            0                             37
  CLUS_4                            8                             15
  CLUS_5                            2                             10
  CLUS_6                            4                             19
  CLUS_7                            5                             16
  CLUS_8                           10                             12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        5      5     18     10      6      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     21     53     25     41     28     37
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        0
  DEL PEAK  7(3Q13.31) WILD-TYPE      1
D32V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            5                             21
  CLUS_2                            5                             53
  CLUS_3                           18                             25
  CLUS_4                           10                             41
  CLUS_5                            6                             28
  CLUS_6                            7                             37
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       13      4      4      8      2     12
  DEL PEAK  7(3Q13.31) WILD-TYPE     29     37     53     24     16     31
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        3
  DEL PEAK  7(3Q13.31) WILD-TYPE      2
D32V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            4                             37
  CLUS_3                            4                             53
  CLUS_4                            8                             24
  CLUS_5                            2                             16
  CLUS_6                           12                             31
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       15      7     14     15
  DEL PEAK  7(3Q13.31) WILD-TYPE     53     69     49     31
D32V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           15                             53
  CLUS_2                            7                             69
  CLUS_3                           14                             49
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED       13      3      3      8     12      4
  DEL PEAK  7(3Q13.31) WILD-TYPE     34     19     46     20     47     25
                                vv
clus                             CLUS_7
  DEL PEAK  7(3Q13.31) MUTATED        8
  DEL PEAK  7(3Q13.31) WILD-TYPE     11
D32V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           13                             34
  CLUS_2                            3                             19
  CLUS_3                            3                             46
  CLUS_4                            8                             20
  CLUS_5                           12                             47
  CLUS_6                            4                             25
  CLUS_7                            8                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       30      8     12
  DEL PEAK  7(3Q13.31) WILD-TYPE     79     39     87
D32V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           30                             79
  CLUS_2                            8                             39
  CLUS_3                           12                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED       24      6     14      6
  DEL PEAK  7(3Q13.31) WILD-TYPE     58     31    100     16
D32V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           24                             58
  CLUS_2                            6                             31
  CLUS_3                           14                            100
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       25      7     10
  DEL PEAK  7(3Q13.31) WILD-TYPE     60     57     35
D32V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           25                             60
  CLUS_2                            7                             57
  CLUS_3                           10                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        4     13      2      4      2      5
  DEL PEAK  7(3Q13.31) WILD-TYPE     20     19     35     19     10     18
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  7(3Q13.31) MUTATED        5      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     16     15
D32V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                           13                             19
  CLUS_3                            2                             35
  CLUS_4                            4                             19
  CLUS_5                            2                             10
  CLUS_6                            5                             18
  CLUS_7                            5                             16
  CLUS_8                            7                             15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED        4      4     19      8      8     11      0
  DEL PEAK  8(3Q29) WILD-TYPE     22     54     24     43     26     33      1
D33V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         4                          22
  CLUS_2                         4                          54
  CLUS_3                        19                          24
  CLUS_4                         8                          43
  CLUS_5                         8                          26
  CLUS_6                        11                          33
  CLUS_7                         0                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED       14      3     10      5      0     12      4
  DEL PEAK  8(3Q29) WILD-TYPE     28     38     47     27     18     31      1
D33V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        14                          28
  CLUS_2                         3                          38
  CLUS_3                        10                          47
  CLUS_4                         5                          27
  CLUS_5                         0                          18
  CLUS_6                        12                          31
  CLUS_7                         4                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       20     12     11     11
  DEL PEAK  8(3Q29) WILD-TYPE     48     64     52     35
D33V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        20                          48
  CLUS_2                        12                          64
  CLUS_3                        11                          52
  CLUS_4                        11                          35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED       18      3      9      7     10      3      4
  DEL PEAK  8(3Q29) WILD-TYPE     29     19     40     21     49     26     15
D33V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        18                          29
  CLUS_2                         3                          19
  CLUS_3                         9                          40
  CLUS_4                         7                          21
  CLUS_5                        10                          49
  CLUS_6                         3                          26
  CLUS_7                         4                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       27     10     16
  DEL PEAK  8(3Q29) WILD-TYPE     82     37     83
D33V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        27                          82
  CLUS_2                        10                          37
  CLUS_3                        16                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED       26      5     18      4
  DEL PEAK  8(3Q29) WILD-TYPE     56     32     96     18
D33V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        26                          56
  CLUS_2                         5                          32
  CLUS_3                        18                          96
  CLUS_4                         4                          18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       24     11      8
  DEL PEAK  8(3Q29) WILD-TYPE     61     53     37
D33V7, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        24                          61
  CLUS_2                        11                          53
  CLUS_3                         8                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED        7     13      7      2      2      7      2
  DEL PEAK  8(3Q29) WILD-TYPE     17     19     30     21     10     16     19
                             vv
clus                          CLUS_8
  DEL PEAK  8(3Q29) MUTATED        3
  DEL PEAK  8(3Q29) WILD-TYPE     19
D33V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         7                          17
  CLUS_2                        13                          19
  CLUS_3                         7                          30
  CLUS_4                         2                          21
  CLUS_5                         2                          10
  CLUS_6                         7                          16
  CLUS_7                         2                          19
  CLUS_8                         3                          19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       16     10     13     11     19     24
  DEL PEAK  9(4Q35.1) WILD-TYPE     10     48     30     40     15     20
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        1
  DEL PEAK  9(4Q35.1) WILD-TYPE      0
D34V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          16                            10
  CLUS_2                          10                            48
  CLUS_3                          13                            30
  CLUS_4                          11                            40
  CLUS_5                          19                            15
  CLUS_6                          24                            20
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       20     10     19      9      2     23
  DEL PEAK  9(4Q35.1) WILD-TYPE     22     31     38     23     16     20
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        4
  DEL PEAK  9(4Q35.1) WILD-TYPE      1
D34V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          20                            22
  CLUS_2                          10                            31
  CLUS_3                          19                            38
  CLUS_4                           9                            23
  CLUS_5                           2                            16
  CLUS_6                          23                            20
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       28     23     30     13
  DEL PEAK  9(4Q35.1) WILD-TYPE     40     53     33     33
D34V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          28                            40
  CLUS_2                          23                            53
  CLUS_3                          30                            33
  CLUS_4                          13                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       24      5     15      8     29      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     23     17     34     20     30     21
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        5
  DEL PEAK  9(4Q35.1) WILD-TYPE     14
D34V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                           5                            17
  CLUS_3                          15                            34
  CLUS_4                           8                            20
  CLUS_5                          29                            30
  CLUS_6                           8                            21
  CLUS_7                           5                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       41     18     34
  DEL PEAK  9(4Q35.1) WILD-TYPE     68     29     65
D34V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          41                            68
  CLUS_2                          18                            29
  CLUS_3                          34                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       36      9     43      5
  DEL PEAK  9(4Q35.1) WILD-TYPE     46     28     71     17
D34V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          36                            46
  CLUS_2                           9                            28
  CLUS_3                          43                            71
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       35     26     18
  DEL PEAK  9(4Q35.1) WILD-TYPE     50     38     27
D34V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          35                            50
  CLUS_2                          26                            38
  CLUS_3                          18                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED        8     14     12     13      5     12
  DEL PEAK  9(4Q35.1) WILD-TYPE     16     18     25     10      7     11
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(4Q35.1) MUTATED        7      8
  DEL PEAK  9(4Q35.1) WILD-TYPE     14     14
D34V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          14                            18
  CLUS_3                          12                            25
  CLUS_4                          13                            10
  CLUS_5                           5                             7
  CLUS_6                          12                            11
  CLUS_7                           7                            14
  CLUS_8                           8                            14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 10(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        0      6      7      7      7      6
  DEL PEAK 10(5P15.33) WILD-TYPE     26     52     36     44     27     38
                                vv
clus                             CLUS_7
  DEL PEAK 10(5P15.33) MUTATED        0
  DEL PEAK 10(5P15.33) WILD-TYPE      1
D35V1, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            0                             26
  CLUS_2                            6                             52
  CLUS_3                            7                             36
  CLUS_4                            7                             44
  CLUS_5                            7                             27
  CLUS_6                            6                             38
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        6      6      3      3      0     10
  DEL PEAK 10(5P15.33) WILD-TYPE     36     35     54     29     18     33
                                vv
clus                             CLUS_7
  DEL PEAK 10(5P15.33) MUTATED        0
  DEL PEAK 10(5P15.33) WILD-TYPE      5
D35V2, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                            6                             35
  CLUS_3                            3                             54
  CLUS_4                            3                             29
  CLUS_5                            0                             18
  CLUS_6                           10                             33
  CLUS_7                            0                              5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED        7      3     17      5
  DEL PEAK 10(5P15.33) WILD-TYPE     61     73     46     41
D35V3, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            7                             61
  CLUS_2                            3                             73
  CLUS_3                           17                             46
  CLUS_4                            5                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        4      3      3      7     15      0
  DEL PEAK 10(5P15.33) WILD-TYPE     43     19     46     21     44     29
                                vv
clus                             CLUS_7
  DEL PEAK 10(5P15.33) MUTATED        0
  DEL PEAK 10(5P15.33) WILD-TYPE     19
D35V4, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                            3                             19
  CLUS_3                            3                             46
  CLUS_4                            7                             21
  CLUS_5                           15                             44
  CLUS_6                            0                             29
  CLUS_7                            0                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       14     10      9
  DEL PEAK 10(5P15.33) WILD-TYPE     95     37     90
D35V5, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           14                             95
  CLUS_2                           10                             37
  CLUS_3                            9                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5P15.33) MUTATED       13      4     15      1
  DEL PEAK 10(5P15.33) WILD-TYPE     69     33     99     21
D35V6, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           13                             69
  CLUS_2                            4                             33
  CLUS_3                           15                             99
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5P15.33) MUTATED       11      5     11
  DEL PEAK 10(5P15.33) WILD-TYPE     74     59     34
D35V7, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                           11                             74
  CLUS_2                            5                             59
  CLUS_3                           11                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5P15.33) MUTATED        4      4      1      7      1      5
  DEL PEAK 10(5P15.33) WILD-TYPE     20     28     36     16     11     18
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 10(5P15.33) MUTATED        4      1
  DEL PEAK 10(5P15.33) WILD-TYPE     17     21
D35V8, multiclass
        clus
vv       DEL PEAK 10(5P15.33) MUTATED DEL PEAK 10(5P15.33) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            4                             28
  CLUS_3                            1                             36
  CLUS_4                            7                             16
  CLUS_5                            1                             11
  CLUS_6                            5                             18
  CLUS_7                            4                             17
  CLUS_8                            1                             21
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 11(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        4      6     10     27     18     16
  DEL PEAK 11(6P25.3) WILD-TYPE     22     52     33     24     16     28
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED        0
  DEL PEAK 11(6P25.3) WILD-TYPE      1
D36V1, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           4                            22
  CLUS_2                           6                            52
  CLUS_3                          10                            33
  CLUS_4                          27                            24
  CLUS_5                          18                            16
  CLUS_6                          16                            28
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED       10      7     31      6      4     17
  DEL PEAK 11(6P25.3) WILD-TYPE     32     34     26     26     14     26
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED        2
  DEL PEAK 11(6P25.3) WILD-TYPE      3
D36V2, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                           7                            34
  CLUS_3                          31                            26
  CLUS_4                           6                            26
  CLUS_5                           4                            14
  CLUS_6                          17                            26
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       12     37     21      8
  DEL PEAK 11(6P25.3) WILD-TYPE     56     39     42     38
D36V3, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          12                            56
  CLUS_2                          37                            39
  CLUS_3                          21                            42
  CLUS_4                           8                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        7      6     26      9     17     11
  DEL PEAK 11(6P25.3) WILD-TYPE     40     16     23     19     42     18
                               vv
clus                            CLUS_7
  DEL PEAK 11(6P25.3) MUTATED        2
  DEL PEAK 11(6P25.3) WILD-TYPE     17
D36V4, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           6                            16
  CLUS_3                          26                            23
  CLUS_4                           9                            19
  CLUS_5                          17                            42
  CLUS_6                          11                            18
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       26     13     42
  DEL PEAK 11(6P25.3) WILD-TYPE     83     34     57
D36V5, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          26                            83
  CLUS_2                          13                            34
  CLUS_3                          42                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6P25.3) MUTATED       20     12     46      3
  DEL PEAK 11(6P25.3) WILD-TYPE     62     25     68     19
D36V6, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          20                            62
  CLUS_2                          12                            25
  CLUS_3                          46                            68
  CLUS_4                           3                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6P25.3) MUTATED       19     25     18
  DEL PEAK 11(6P25.3) WILD-TYPE     66     39     27
D36V7, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                          19                            66
  CLUS_2                          25                            39
  CLUS_3                          18                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6P25.3) MUTATED        6      9     16      5      6      7
  DEL PEAK 11(6P25.3) WILD-TYPE     18     23     21     18      6     16
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 11(6P25.3) MUTATED        9      4
  DEL PEAK 11(6P25.3) WILD-TYPE     12     18
D36V8, multiclass
        clus
vv       DEL PEAK 11(6P25.3) MUTATED DEL PEAK 11(6P25.3) WILD-TYPE
  CLUS_1                           6                            18
  CLUS_2                           9                            23
  CLUS_3                          16                            21
  CLUS_4                           5                            18
  CLUS_5                           6                             6
  CLUS_6                           7                            16
  CLUS_7                           9                            12
  CLUS_8                           4                            18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 12(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED       10      7     14     16     16     15
  DEL PEAK 12(6Q14.1) WILD-TYPE     16     51     29     35     18     29
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q14.1) MUTATED        0
  DEL PEAK 12(6Q14.1) WILD-TYPE      1
D37V1, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          10                            16
  CLUS_2                           7                            51
  CLUS_3                          14                            29
  CLUS_4                          16                            35
  CLUS_5                          16                            18
  CLUS_6                          15                            29
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED       14      6     20      6      2     20
  DEL PEAK 12(6Q14.1) WILD-TYPE     28     35     37     26     16     23
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q14.1) MUTATED        3
  DEL PEAK 12(6Q14.1) WILD-TYPE      2
D37V2, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          14                            28
  CLUS_2                           6                            35
  CLUS_3                          20                            37
  CLUS_4                           6                            26
  CLUS_5                           2                            16
  CLUS_6                          20                            23
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       19     23     25     10
  DEL PEAK 12(6Q14.1) WILD-TYPE     49     53     38     36
D37V3, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          19                            49
  CLUS_2                          23                            53
  CLUS_3                          25                            38
  CLUS_4                          10                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED       15      4     16      8     23      7
  DEL PEAK 12(6Q14.1) WILD-TYPE     32     18     33     20     36     22
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q14.1) MUTATED        4
  DEL PEAK 12(6Q14.1) WILD-TYPE     15
D37V4, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          15                            32
  CLUS_2                           4                            18
  CLUS_3                          16                            33
  CLUS_4                           8                            20
  CLUS_5                          23                            36
  CLUS_6                           7                            22
  CLUS_7                           4                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       29     17     31
  DEL PEAK 12(6Q14.1) WILD-TYPE     80     30     68
D37V5, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          29                            80
  CLUS_2                          17                            30
  CLUS_3                          31                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q14.1) MUTATED       26     10     37      4
  DEL PEAK 12(6Q14.1) WILD-TYPE     56     27     77     18
D37V6, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          26                            56
  CLUS_2                          10                            27
  CLUS_3                          37                            77
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q14.1) MUTATED       24     22     23
  DEL PEAK 12(6Q14.1) WILD-TYPE     61     42     22
D37V7, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                          24                            61
  CLUS_2                          22                            42
  CLUS_3                          23                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q14.1) MUTATED        8     10     14     10      4      9
  DEL PEAK 12(6Q14.1) WILD-TYPE     16     22     23     13      8     14
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 12(6Q14.1) MUTATED        8      6
  DEL PEAK 12(6Q14.1) WILD-TYPE     13     16
D37V8, multiclass
        clus
vv       DEL PEAK 12(6Q14.1) MUTATED DEL PEAK 12(6Q14.1) WILD-TYPE
  CLUS_1                           8                            16
  CLUS_2                          10                            22
  CLUS_3                          14                            23
  CLUS_4                          10                            13
  CLUS_5                           4                             8
  CLUS_6                           9                            14
  CLUS_7                           8                            13
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 13(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED        9      5     11     11      9     26
  DEL PEAK 13(7Q36.3) WILD-TYPE     17     53     32     40     25     18
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED        0
  DEL PEAK 13(7Q36.3) WILD-TYPE      1
D38V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           9                            17
  CLUS_2                           5                            53
  CLUS_3                          11                            32
  CLUS_4                          11                            40
  CLUS_5                           9                            25
  CLUS_6                          26                            18
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED       15      7     16      5      4     19
  DEL PEAK 13(7Q36.3) WILD-TYPE     27     34     41     27     14     24
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED        1
  DEL PEAK 13(7Q36.3) WILD-TYPE      4
D38V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          15                            27
  CLUS_2                           7                            34
  CLUS_3                          16                            41
  CLUS_4                           5                            27
  CLUS_5                           4                            14
  CLUS_6                          19                            24
  CLUS_7                           1                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       17     23     25      6
  DEL PEAK 13(7Q36.3) WILD-TYPE     51     53     38     40
D38V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          17                            51
  CLUS_2                          23                            53
  CLUS_3                          25                            38
  CLUS_4                           6                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED       14      3     14      6     23      9
  DEL PEAK 13(7Q36.3) WILD-TYPE     33     19     35     22     36     20
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED        2
  DEL PEAK 13(7Q36.3) WILD-TYPE     17
D38V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          14                            33
  CLUS_2                           3                            19
  CLUS_3                          14                            35
  CLUS_4                           6                            22
  CLUS_5                          23                            36
  CLUS_6                           9                            20
  CLUS_7                           2                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       23     17     30
  DEL PEAK 13(7Q36.3) WILD-TYPE     86     30     69
D38V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          23                            86
  CLUS_2                          17                            30
  CLUS_3                          30                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       22     11     37      0
  DEL PEAK 13(7Q36.3) WILD-TYPE     60     26     77     22
D38V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          22                            60
  CLUS_2                          11                            26
  CLUS_3                          37                            77
  CLUS_4                           0                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       17     21     16
  DEL PEAK 13(7Q36.3) WILD-TYPE     68     43     29
D38V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          17                            68
  CLUS_2                          21                            43
  CLUS_3                          16                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED        7     10     12      8      3      5
  DEL PEAK 13(7Q36.3) WILD-TYPE     17     22     25     15      9     18
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 13(7Q36.3) MUTATED        7      2
  DEL PEAK 13(7Q36.3) WILD-TYPE     14     20
D38V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                           7                            17
  CLUS_2                          10                            22
  CLUS_3                          12                            25
  CLUS_4                           8                            15
  CLUS_5                           3                             9
  CLUS_6                           5                            18
  CLUS_7                           7                            14
  CLUS_8                           2                            20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED        5      8     23     10     14     21
  DEL PEAK 14(8P23.3) WILD-TYPE     21     50     20     41     20     23
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED        0
  DEL PEAK 14(8P23.3) WILD-TYPE      1
D39V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                           8                            50
  CLUS_3                          23                            20
  CLUS_4                          10                            41
  CLUS_5                          14                            20
  CLUS_6                          21                            23
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       22      6      6     10      2     23
  DEL PEAK 14(8P23.3) WILD-TYPE     20     35     51     22     16     20
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED        3
  DEL PEAK 14(8P23.3) WILD-TYPE      2
D39V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          22                            20
  CLUS_2                           6                            35
  CLUS_3                           6                            51
  CLUS_4                          10                            22
  CLUS_5                           2                            16
  CLUS_6                          23                            20
  CLUS_7                           3                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       30     12     26     12
  DEL PEAK 14(8P23.3) WILD-TYPE     38     64     37     34
D39V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          30                            38
  CLUS_2                          12                            64
  CLUS_3                          26                            37
  CLUS_4                          12                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       23      7      6      7     25      7
  DEL PEAK 14(8P23.3) WILD-TYPE     24     15     43     21     34     22
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED        5
  DEL PEAK 14(8P23.3) WILD-TYPE     14
D39V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          23                            24
  CLUS_2                           7                            15
  CLUS_3                           6                            43
  CLUS_4                           7                            21
  CLUS_5                          25                            34
  CLUS_6                           7                            22
  CLUS_7                           5                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       39     20     20
  DEL PEAK 14(8P23.3) WILD-TYPE     70     27     79
D39V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          39                            70
  CLUS_2                          20                            27
  CLUS_3                          20                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       36     14     25      4
  DEL PEAK 14(8P23.3) WILD-TYPE     46     23     89     18
D39V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          36                            46
  CLUS_2                          14                            23
  CLUS_3                          25                            89
  CLUS_4                           4                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       35     12     17
  DEL PEAK 14(8P23.3) WILD-TYPE     50     52     28
D39V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          35                            50
  CLUS_2                          12                            52
  CLUS_3                          17                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       10     16      4      8      1     13
  DEL PEAK 14(8P23.3) WILD-TYPE     14     16     33     15     11     10
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 14(8P23.3) MUTATED        7      5
  DEL PEAK 14(8P23.3) WILD-TYPE     14     17
D39V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          16                            16
  CLUS_3                           4                            33
  CLUS_4                           8                            15
  CLUS_5                           1                            11
  CLUS_6                          13                            10
  CLUS_7                           7                            14
  CLUS_8                           5                            17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 15(9P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       12     17     18     24      9     20
  DEL PEAK 15(9P24.3) WILD-TYPE     14     41     25     27     25     24
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P24.3) MUTATED        0
  DEL PEAK 15(9P24.3) WILD-TYPE      1
D40V1, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          12                            14
  CLUS_2                          17                            41
  CLUS_3                          18                            25
  CLUS_4                          24                            27
  CLUS_5                           9                            25
  CLUS_6                          20                            24
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       19     14     19     14      5     19
  DEL PEAK 15(9P24.3) WILD-TYPE     23     27     38     18     13     24
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P24.3) MUTATED        2
  DEL PEAK 15(9P24.3) WILD-TYPE      3
D40V2, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          19                            23
  CLUS_2                          14                            27
  CLUS_3                          19                            38
  CLUS_4                          14                            18
  CLUS_5                           5                            13
  CLUS_6                          19                            24
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       25     22     34     16
  DEL PEAK 15(9P24.3) WILD-TYPE     43     54     29     30
D40V3, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          25                            43
  CLUS_2                          22                            54
  CLUS_3                          34                            29
  CLUS_4                          16                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       19      7     16     13     27      7
  DEL PEAK 15(9P24.3) WILD-TYPE     28     15     33     15     32     22
                               vv
clus                            CLUS_7
  DEL PEAK 15(9P24.3) MUTATED        8
  DEL PEAK 15(9P24.3) WILD-TYPE     11
D40V4, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                           7                            15
  CLUS_3                          16                            33
  CLUS_4                          13                            15
  CLUS_5                          27                            32
  CLUS_6                           7                            22
  CLUS_7                           8                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       40     24     36
  DEL PEAK 15(9P24.3) WILD-TYPE     69     23     63
D40V5, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          40                            69
  CLUS_2                          24                            23
  CLUS_3                          36                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P24.3) MUTATED       33     15     45      7
  DEL PEAK 15(9P24.3) WILD-TYPE     49     22     69     15
D40V6, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          33                            49
  CLUS_2                          15                            22
  CLUS_3                          45                            69
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P24.3) MUTATED       35     20     24
  DEL PEAK 15(9P24.3) WILD-TYPE     50     44     21
D40V7, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          35                            50
  CLUS_2                          20                            44
  CLUS_3                          24                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9P24.3) MUTATED       10     13     12     12      3     10
  DEL PEAK 15(9P24.3) WILD-TYPE     14     19     25     11      9     13
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 15(9P24.3) MUTATED        9     10
  DEL PEAK 15(9P24.3) WILD-TYPE     12     12
D40V8, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          10                            14
  CLUS_2                          13                            19
  CLUS_3                          12                            25
  CLUS_4                          12                            11
  CLUS_5                           3                             9
  CLUS_6                          10                            13
  CLUS_7                           9                            12
  CLUS_8                          10                            12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       15     19     25     27     11     17
  DEL PEAK 16(9P21.3) WILD-TYPE     11     39     18     24     23     27
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        0
  DEL PEAK 16(9P21.3) WILD-TYPE      1
D41V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          15                            11
  CLUS_2                          19                            39
  CLUS_3                          25                            18
  CLUS_4                          27                            24
  CLUS_5                          11                            23
  CLUS_6                          17                            27
  CLUS_7                           0                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       23     18     19     16      4     23
  DEL PEAK 16(9P21.3) WILD-TYPE     19     23     38     16     14     20
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        2
  DEL PEAK 16(9P21.3) WILD-TYPE      3
D41V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          23                            19
  CLUS_2                          18                            23
  CLUS_3                          19                            38
  CLUS_4                          16                            16
  CLUS_5                           4                            14
  CLUS_6                          23                            20
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       30     21     39     21
  DEL PEAK 16(9P21.3) WILD-TYPE     38     55     24     25
D41V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          30                            38
  CLUS_2                          21                            55
  CLUS_3                          39                            24
  CLUS_4                          21                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       24      7     17     16     33      5
  DEL PEAK 16(9P21.3) WILD-TYPE     23     15     32     12     26     24
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        9
  DEL PEAK 16(9P21.3) WILD-TYPE     10
D41V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                           7                            15
  CLUS_3                          17                            32
  CLUS_4                          16                            12
  CLUS_5                          33                            26
  CLUS_6                           5                            24
  CLUS_7                           9                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       46     29     38
  DEL PEAK 16(9P21.3) WILD-TYPE     63     18     61
D41V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          46                            63
  CLUS_2                          29                            18
  CLUS_3                          38                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       41     17     47      8
  DEL PEAK 16(9P21.3) WILD-TYPE     41     20     67     14
D41V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          41                            41
  CLUS_2                          17                            20
  CLUS_3                          47                            67
  CLUS_4                           8                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       41     19     32
  DEL PEAK 16(9P21.3) WILD-TYPE     44     45     13
D41V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          41                            44
  CLUS_2                          19                            45
  CLUS_3                          32                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       11     17     10     16      2     10
  DEL PEAK 16(9P21.3) WILD-TYPE     13     15     27      7     10     13
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 16(9P21.3) MUTATED       16     10
  DEL PEAK 16(9P21.3) WILD-TYPE      5     12
D41V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          17                            15
  CLUS_3                          10                            27
  CLUS_4                          16                             7
  CLUS_5                           2                            10
  CLUS_6                          10                            13
  CLUS_7                          16                             5
  CLUS_8                          10                            12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 17(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        8      3      7     10     15     17
  DEL PEAK 17(9Q34.3) WILD-TYPE     18     55     36     41     19     27
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        1
  DEL PEAK 17(9Q34.3) WILD-TYPE      0
D42V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           8                            18
  CLUS_2                           3                            55
  CLUS_3                           7                            36
  CLUS_4                          10                            41
  CLUS_5                          15                            19
  CLUS_6                          17                            27
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        8      2     21      6      5     15
  DEL PEAK 17(9Q34.3) WILD-TYPE     34     39     36     26     13     28
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        2
  DEL PEAK 17(9Q34.3) WILD-TYPE      3
D42V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                           2                            39
  CLUS_3                          21                            36
  CLUS_4                           6                            26
  CLUS_5                           5                            13
  CLUS_6                          15                            28
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED        9     26     16      9
  DEL PEAK 17(9Q34.3) WILD-TYPE     59     50     47     37
D42V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           9                            59
  CLUS_2                          26                            50
  CLUS_3                          16                            47
  CLUS_4                           9                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        7      2     15      5     15     11
  DEL PEAK 17(9Q34.3) WILD-TYPE     40     20     34     23     44     18
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        5
  DEL PEAK 17(9Q34.3) WILD-TYPE     14
D42V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           2                            20
  CLUS_3                          15                            34
  CLUS_4                           5                            23
  CLUS_5                          15                            44
  CLUS_6                          11                            18
  CLUS_7                           5                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       20      6     35
  DEL PEAK 17(9Q34.3) WILD-TYPE     89     41     64
D42V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          20                            89
  CLUS_2                           6                            41
  CLUS_3                          35                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED       14      3     39      5
  DEL PEAK 17(9Q34.3) WILD-TYPE     68     34     75     17
D42V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          14                            68
  CLUS_2                           3                            34
  CLUS_3                          39                            75
  CLUS_4                           5                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       17     22      9
  DEL PEAK 17(9Q34.3) WILD-TYPE     68     42     36
D42V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          17                            68
  CLUS_2                          22                            42
  CLUS_3                           9                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        1      5     13      8      5      4
  DEL PEAK 17(9Q34.3) WILD-TYPE     23     27     24     15      7     19
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 17(9Q34.3) MUTATED        5      7
  DEL PEAK 17(9Q34.3) WILD-TYPE     16     15
D42V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           1                            23
  CLUS_2                           5                            27
  CLUS_3                          13                            24
  CLUS_4                           8                            15
  CLUS_5                           5                             7
  CLUS_6                           4                            19
  CLUS_7                           5                            16
  CLUS_8                           7                            15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       14     10     20     34     25     25
  DEL PEAK 18(10P15.3) WILD-TYPE     12     48     23     17      9     19
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        0
  DEL PEAK 18(10P15.3) WILD-TYPE      1
D43V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                           10                             48
  CLUS_3                           20                             23
  CLUS_4                           34                             17
  CLUS_5                           25                              9
  CLUS_6                           25                             19
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       28      9     38     14      4     23
  DEL PEAK 18(10P15.3) WILD-TYPE     14     32     19     18     14     20
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        3
  DEL PEAK 18(10P15.3) WILD-TYPE      2
D43V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             14
  CLUS_2                            9                             32
  CLUS_3                           38                             19
  CLUS_4                           14                             18
  CLUS_5                            4                             14
  CLUS_6                           23                             20
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       30     44     32     21
  DEL PEAK 18(10P15.3) WILD-TYPE     38     32     31     25
D43V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           30                             38
  CLUS_2                           44                             32
  CLUS_3                           32                             31
  CLUS_4                           21                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       26      5     34     12     29     11
  DEL PEAK 18(10P15.3) WILD-TYPE     21     17     15     16     30     18
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED       10
  DEL PEAK 18(10P15.3) WILD-TYPE      9
D43V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           26                             21
  CLUS_2                            5                             17
  CLUS_3                           34                             15
  CLUS_4                           12                             16
  CLUS_5                           29                             30
  CLUS_6                           11                             18
  CLUS_7                           10                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       52     20     55
  DEL PEAK 18(10P15.3) WILD-TYPE     57     27     44
D43V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           52                             57
  CLUS_2                           20                             27
  CLUS_3                           55                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       43     12     65      7
  DEL PEAK 18(10P15.3) WILD-TYPE     39     25     49     15
D43V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           43                             39
  CLUS_2                           12                             25
  CLUS_3                           65                             49
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       42     36     23
  DEL PEAK 18(10P15.3) WILD-TYPE     43     28     22
D43V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           36                             28
  CLUS_3                           23                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED        9     16     19     14      9     13
  DEL PEAK 18(10P15.3) WILD-TYPE     15     16     18      9      3     10
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 18(10P15.3) MUTATED       11     10
  DEL PEAK 18(10P15.3) WILD-TYPE     10     12
D43V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            9                             15
  CLUS_2                           16                             16
  CLUS_3                           19                             18
  CLUS_4                           14                              9
  CLUS_5                            9                              3
  CLUS_6                           13                             10
  CLUS_7                           11                             10
  CLUS_8                           10                             12
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 19(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       16      8     12     42     26     33
  DEL PEAK 19(10Q23.31) WILD-TYPE     10     50     31      9      8     11
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED        1
  DEL PEAK 19(10Q23.31) WILD-TYPE      0
D44V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            16                              10
  CLUS_2                             8                              50
  CLUS_3                            12                              31
  CLUS_4                            42                               9
  CLUS_5                            26                               8
  CLUS_6                            33                              11
  CLUS_7                             1                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       26      6     50      8      6     29
  DEL PEAK 19(10Q23.31) WILD-TYPE     16     35      7     24     12     14
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED        4
  DEL PEAK 19(10Q23.31) WILD-TYPE      1
D44V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            26                              16
  CLUS_2                             6                              35
  CLUS_3                            50                               7
  CLUS_4                             8                              24
  CLUS_5                             6                              12
  CLUS_6                            29                              14
  CLUS_7                             4                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       29     60     36     12
  DEL PEAK 19(10Q23.31) WILD-TYPE     39     16     27     34
D44V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            29                              39
  CLUS_2                            60                              16
  CLUS_3                            36                              27
  CLUS_4                            12                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       25      7     46      7     33     15
  DEL PEAK 19(10Q23.31) WILD-TYPE     22     15      3     21     26     14
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED        4
  DEL PEAK 19(10Q23.31) WILD-TYPE     15
D44V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            25                              22
  CLUS_2                             7                              15
  CLUS_3                            46                               3
  CLUS_4                             7                              21
  CLUS_5                            33                              26
  CLUS_6                            15                              14
  CLUS_7                             4                              15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       42     26     69
  DEL PEAK 19(10Q23.31) WILD-TYPE     67     21     30
D44V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            42                              67
  CLUS_2                            26                              21
  CLUS_3                            69                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       38     14     81      4
  DEL PEAK 19(10Q23.31) WILD-TYPE     44     23     33     18
D44V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            38                              44
  CLUS_2                            14                              23
  CLUS_3                            81                              33
  CLUS_4                             4                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       35     47     24
  DEL PEAK 19(10Q23.31) WILD-TYPE     50     17     21
D44V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            35                              50
  CLUS_2                            47                              17
  CLUS_3                            24                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       15     12     30     13      8     14
  DEL PEAK 19(10Q23.31) WILD-TYPE      9     20      7     10      4      9
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 19(10Q23.31) MUTATED        9      5
  DEL PEAK 19(10Q23.31) WILD-TYPE     12     17
D44V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            15                               9
  CLUS_2                            12                              20
  CLUS_3                            30                               7
  CLUS_4                            13                              10
  CLUS_5                             8                               4
  CLUS_6                            14                               9
  CLUS_7                             9                              12
  CLUS_8                             5                              17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 20(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       14      8     11     42     24     32
  DEL PEAK 20(10Q26.3) WILD-TYPE     12     50     32      9     10     12
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        1
  DEL PEAK 20(10Q26.3) WILD-TYPE      0
D45V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                            8                             50
  CLUS_3                           11                             32
  CLUS_4                           42                              9
  CLUS_5                           24                             10
  CLUS_6                           32                             12
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       23      7     47      6      7     31
  DEL PEAK 20(10Q26.3) WILD-TYPE     19     34     10     26     11     12
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        4
  DEL PEAK 20(10Q26.3) WILD-TYPE      1
D45V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           23                             19
  CLUS_2                            7                             34
  CLUS_3                           47                             10
  CLUS_4                            6                             26
  CLUS_5                            7                             11
  CLUS_6                           31                             12
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       24     56     39     11
  DEL PEAK 20(10Q26.3) WILD-TYPE     44     20     24     35
D45V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           24                             44
  CLUS_2                           56                             20
  CLUS_3                           39                             24
  CLUS_4                           11                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       21      7     41      6     35     16
  DEL PEAK 20(10Q26.3) WILD-TYPE     26     15      8     22     24     13
                                vv
clus                             CLUS_7
  DEL PEAK 20(10Q26.3) MUTATED        4
  DEL PEAK 20(10Q26.3) WILD-TYPE     15
D45V4, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            7                             15
  CLUS_3                           41                              8
  CLUS_4                            6                             22
  CLUS_5                           35                             24
  CLUS_6                           16                             13
  CLUS_7                            4                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       39     27     64
  DEL PEAK 20(10Q26.3) WILD-TYPE     70     20     35
D45V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           39                             70
  CLUS_2                           27                             20
  CLUS_3                           64                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(10Q26.3) MUTATED       37     14     76      3
  DEL PEAK 20(10Q26.3) WILD-TYPE     45     23     38     19
D45V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           37                             45
  CLUS_2                           14                             23
  CLUS_3                           76                             38
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(10Q26.3) MUTATED       32     47     24
  DEL PEAK 20(10Q26.3) WILD-TYPE     53     17     21
D45V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           47                             17
  CLUS_3                           24                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(10Q26.3) MUTATED       14     10     29     12      9     14
  DEL PEAK 20(10Q26.3) WILD-TYPE     10     22      8     11      3      9
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 20(10Q26.3) MUTATED       10      5
  DEL PEAK 20(10Q26.3) WILD-TYPE     11     17
D45V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           10                             22
  CLUS_3                           29                              8
  CLUS_4                           12                             11
  CLUS_5                            9                              3
  CLUS_6                           14                              9
  CLUS_7                           10                             11
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 21(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       14      3     27     21     20     25
  DEL PEAK 21(11P15.5) WILD-TYPE     12     55     16     30     14     19
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        0
  DEL PEAK 21(11P15.5) WILD-TYPE      1
D46V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                            3                             55
  CLUS_3                           27                             16
  CLUS_4                           21                             30
  CLUS_5                           20                             14
  CLUS_6                           25                             19
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       25      9     29      9      3     21
  DEL PEAK 21(11P15.5) WILD-TYPE     17     32     28     23     15     22
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        3
  DEL PEAK 21(11P15.5) WILD-TYPE      2
D46V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           25                             17
  CLUS_2                            9                             32
  CLUS_3                           29                             28
  CLUS_4                            9                             23
  CLUS_5                            3                             15
  CLUS_6                           21                             22
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       33     35     26     16
  DEL PEAK 21(11P15.5) WILD-TYPE     35     41     37     30
D46V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           33                             35
  CLUS_2                           35                             41
  CLUS_3                           26                             37
  CLUS_4                           16                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       27      6     25      9     23     11
  DEL PEAK 21(11P15.5) WILD-TYPE     20     16     24     19     36     18
                                vv
clus                             CLUS_7
  DEL PEAK 21(11P15.5) MUTATED        9
  DEL PEAK 21(11P15.5) WILD-TYPE     10
D46V4, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                            6                             16
  CLUS_3                           25                             24
  CLUS_4                            9                             19
  CLUS_5                           23                             36
  CLUS_6                           11                             18
  CLUS_7                            9                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       42     23     43
  DEL PEAK 21(11P15.5) WILD-TYPE     67     24     56
D46V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           42                             67
  CLUS_2                           23                             24
  CLUS_3                           43                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11P15.5) MUTATED       37     13     52      6
  DEL PEAK 21(11P15.5) WILD-TYPE     45     24     62     16
D46V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           37                             45
  CLUS_2                           13                             24
  CLUS_3                           52                             62
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11P15.5) MUTATED       37     32     21
  DEL PEAK 21(11P15.5) WILD-TYPE     48     32     24
D46V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           37                             48
  CLUS_2                           32                             32
  CLUS_3                           21                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11P15.5) MUTATED       14     15     18     12      4     11
  DEL PEAK 21(11P15.5) WILD-TYPE     10     17     19     11      8     12
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 21(11P15.5) MUTATED        7      9
  DEL PEAK 21(11P15.5) WILD-TYPE     14     13
D46V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           15                             17
  CLUS_3                           18                             19
  CLUS_4                           12                             11
  CLUS_5                            4                              8
  CLUS_6                           11                             12
  CLUS_7                            7                             14
  CLUS_8                            9                             13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 22(11Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       12      8     32     16     20     35
  DEL PEAK 22(11Q24.2) WILD-TYPE     14     50     11     35     14      9
                                vv
clus                             CLUS_7
  DEL PEAK 22(11Q24.2) MUTATED        0
  DEL PEAK 22(11Q24.2) WILD-TYPE      1
D47V1, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           12                             14
  CLUS_2                            8                             50
  CLUS_3                           32                             11
  CLUS_4                           16                             35
  CLUS_5                           20                             14
  CLUS_6                           35                              9
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       35     12     23     10      2     27
  DEL PEAK 22(11Q24.2) WILD-TYPE      7     29     34     22     16     16
                                vv
clus                             CLUS_7
  DEL PEAK 22(11Q24.2) MUTATED        4
  DEL PEAK 22(11Q24.2) WILD-TYPE      1
D47V2, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           35                              7
  CLUS_2                           12                             29
  CLUS_3                           23                             34
  CLUS_4                           10                             22
  CLUS_5                            2                             16
  CLUS_6                           27                             16
  CLUS_7                            4                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q24.2) MUTATED       44     28     33     17
  DEL PEAK 22(11Q24.2) WILD-TYPE     24     48     30     29
D47V3, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           44                             24
  CLUS_2                           28                             48
  CLUS_3                           33                             30
  CLUS_4                           17                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       36     11     19     13     27      9
  DEL PEAK 22(11Q24.2) WILD-TYPE     11     11     30     15     32     20
                                vv
clus                             CLUS_7
  DEL PEAK 22(11Q24.2) MUTATED        7
  DEL PEAK 22(11Q24.2) WILD-TYPE     12
D47V4, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           36                             11
  CLUS_2                           11                             11
  CLUS_3                           19                             30
  CLUS_4                           13                             15
  CLUS_5                           27                             32
  CLUS_6                            9                             20
  CLUS_7                            7                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q24.2) MUTATED       56     27     38
  DEL PEAK 22(11Q24.2) WILD-TYPE     53     20     61
D47V5, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           56                             53
  CLUS_2                           27                             20
  CLUS_3                           38                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(11Q24.2) MUTATED       48     17     50      6
  DEL PEAK 22(11Q24.2) WILD-TYPE     34     20     64     16
D47V6, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           48                             34
  CLUS_2                           17                             20
  CLUS_3                           50                             64
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(11Q24.2) MUTATED       49     30     26
  DEL PEAK 22(11Q24.2) WILD-TYPE     36     34     19
D47V7, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           49                             36
  CLUS_2                           30                             34
  CLUS_3                           26                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(11Q24.2) MUTATED       16     23     15     16      4     13
  DEL PEAK 22(11Q24.2) WILD-TYPE      8      9     22      7      8     10
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(11Q24.2) MUTATED        9      9
  DEL PEAK 22(11Q24.2) WILD-TYPE     12     13
D47V8, multiclass
        clus
vv       DEL PEAK 22(11Q24.2) MUTATED DEL PEAK 22(11Q24.2) WILD-TYPE
  CLUS_1                           16                              8
  CLUS_2                           23                              9
  CLUS_3                           15                             22
  CLUS_4                           16                              7
  CLUS_5                            4                              8
  CLUS_6                           13                             10
  CLUS_7                            9                             12
  CLUS_8                            9                             13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 23(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       17      9     18      6     17     20
  DEL PEAK 23(12P13.1) WILD-TYPE      9     49     25     45     17     24
                                vv
clus                             CLUS_7
  DEL PEAK 23(12P13.1) MUTATED        0
  DEL PEAK 23(12P13.1) WILD-TYPE      1
D48V1, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           17                              9
  CLUS_2                            9                             49
  CLUS_3                           18                             25
  CLUS_4                            6                             45
  CLUS_5                           17                             17
  CLUS_6                           20                             24
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       23      7     17      6      4     21
  DEL PEAK 23(12P13.1) WILD-TYPE     19     34     40     26     14     22
                                vv
clus                             CLUS_7
  DEL PEAK 23(12P13.1) MUTATED        1
  DEL PEAK 23(12P13.1) WILD-TYPE      4
D48V2, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           23                             19
  CLUS_2                            7                             34
  CLUS_3                           17                             40
  CLUS_4                            6                             26
  CLUS_5                            4                             14
  CLUS_6                           21                             22
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12P13.1) MUTATED       31     23     22      9
  DEL PEAK 23(12P13.1) WILD-TYPE     37     53     41     37
D48V3, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           31                             37
  CLUS_2                           23                             53
  CLUS_3                           22                             41
  CLUS_4                            9                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       27      7     14      6     20      9
  DEL PEAK 23(12P13.1) WILD-TYPE     20     15     35     22     39     20
                                vv
clus                             CLUS_7
  DEL PEAK 23(12P13.1) MUTATED        2
  DEL PEAK 23(12P13.1) WILD-TYPE     17
D48V4, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                            7                             15
  CLUS_3                           14                             35
  CLUS_4                            6                             22
  CLUS_5                           20                             39
  CLUS_6                            9                             20
  CLUS_7                            2                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12P13.1) MUTATED       38     20     28
  DEL PEAK 23(12P13.1) WILD-TYPE     71     27     71
D48V5, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           38                             71
  CLUS_2                           20                             27
  CLUS_3                           28                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12P13.1) MUTATED       36     13     34      3
  DEL PEAK 23(12P13.1) WILD-TYPE     46     24     80     19
D48V6, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           36                             46
  CLUS_2                           13                             24
  CLUS_3                           34                             80
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12P13.1) MUTATED       29     18     19
  DEL PEAK 23(12P13.1) WILD-TYPE     56     46     26
D48V7, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           18                             46
  CLUS_3                           19                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(12P13.1) MUTATED       12     14     10      7      3      9
  DEL PEAK 23(12P13.1) WILD-TYPE     12     18     27     16      9     14
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(12P13.1) MUTATED        7      4
  DEL PEAK 23(12P13.1) WILD-TYPE     14     18
D48V8, multiclass
        clus
vv       DEL PEAK 23(12P13.1) MUTATED DEL PEAK 23(12P13.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           14                             18
  CLUS_3                           10                             27
  CLUS_4                            7                             16
  CLUS_5                            3                              9
  CLUS_6                            9                             14
  CLUS_7                            7                             14
  CLUS_8                            4                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 24(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED        9      3      7      9     14     13      1
  DEL PEAK 24(12Q12) WILD-TYPE     17     55     36     42     20     31      0
D49V1, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                          9                           17
  CLUS_2                          3                           55
  CLUS_3                          7                           36
  CLUS_4                          9                           42
  CLUS_5                         14                           20
  CLUS_6                         13                           31
  CLUS_7                          1                            0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED       12      5     20      2      2     12      0
  DEL PEAK 24(12Q12) WILD-TYPE     30     36     37     30     16     31      5
D49V2, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         12                           30
  CLUS_2                          5                           36
  CLUS_3                         20                           37
  CLUS_4                          2                           30
  CLUS_5                          2                           16
  CLUS_6                         12                           31
  CLUS_7                          0                            5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q12) MUTATED       13     22     16      5
  DEL PEAK 24(12Q12) WILD-TYPE     55     54     47     41
D49V3, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         13                           55
  CLUS_2                         22                           54
  CLUS_3                         16                           47
  CLUS_4                          5                           41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED       13      3     17      3     15      5      0
  DEL PEAK 24(12Q12) WILD-TYPE     34     19     32     25     44     24     19
D49V4, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         13                           34
  CLUS_2                          3                           19
  CLUS_3                         17                           32
  CLUS_4                          3                           25
  CLUS_5                         15                           44
  CLUS_6                          5                           24
  CLUS_7                          0                           19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q12) MUTATED       16     14     26
  DEL PEAK 24(12Q12) WILD-TYPE     93     33     73
D49V5, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         16                           93
  CLUS_2                         14                           33
  CLUS_3                         26                           73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(12Q12) MUTATED       16      4     34      2
  DEL PEAK 24(12Q12) WILD-TYPE     66     33     80     20
D49V6, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         16                           66
  CLUS_2                          4                           33
  CLUS_3                         34                           80
  CLUS_4                          2                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(12Q12) MUTATED       14     20     10
  DEL PEAK 24(12Q12) WILD-TYPE     71     44     35
D49V7, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                         14                           71
  CLUS_2                         20                           44
  CLUS_3                         10                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 24(12Q12) MUTATED        6      6     13      4      4      4      5
  DEL PEAK 24(12Q12) WILD-TYPE     18     26     24     19      8     19     16
                              vv
clus                           CLUS_8
  DEL PEAK 24(12Q12) MUTATED        2
  DEL PEAK 24(12Q12) WILD-TYPE     20
D49V8, multiclass
        clus
vv       DEL PEAK 24(12Q12) MUTATED DEL PEAK 24(12Q12) WILD-TYPE
  CLUS_1                          6                           18
  CLUS_2                          6                           26
  CLUS_3                         13                           24
  CLUS_4                          4                           19
  CLUS_5                          4                            8
  CLUS_6                          4                           19
  CLUS_7                          5                           16
  CLUS_8                          2                           20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 25(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED       14      7     10      8     15     14
  DEL PEAK 25(12Q24.33) WILD-TYPE     12     51     33     43     19     30
                                 vv
clus                              CLUS_7
  DEL PEAK 25(12Q24.33) MUTATED        1
  DEL PEAK 25(12Q24.33) WILD-TYPE      0
D50V1, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            14                              12
  CLUS_2                             7                              51
  CLUS_3                            10                              33
  CLUS_4                             8                              43
  CLUS_5                            15                              19
  CLUS_6                            14                              30
  CLUS_7                             1                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED       15      4     23      7      1     14
  DEL PEAK 25(12Q24.33) WILD-TYPE     27     37     34     25     17     29
                                 vv
clus                              CLUS_7
  DEL PEAK 25(12Q24.33) MUTATED        0
  DEL PEAK 25(12Q24.33) WILD-TYPE      5
D50V2, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            15                              27
  CLUS_2                             4                              37
  CLUS_3                            23                              34
  CLUS_4                             7                              25
  CLUS_5                             1                              17
  CLUS_6                            14                              29
  CLUS_7                             0                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       19     24     15     11
  DEL PEAK 25(12Q24.33) WILD-TYPE     49     52     48     35
D50V3, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            19                              49
  CLUS_2                            24                              52
  CLUS_3                            15                              48
  CLUS_4                            11                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED       17      3     21      5     16      3
  DEL PEAK 25(12Q24.33) WILD-TYPE     30     19     28     23     43     26
                                 vv
clus                              CLUS_7
  DEL PEAK 25(12Q24.33) MUTATED        4
  DEL PEAK 25(12Q24.33) WILD-TYPE     15
D50V4, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            17                              30
  CLUS_2                             3                              19
  CLUS_3                            21                              28
  CLUS_4                             5                              23
  CLUS_5                            16                              43
  CLUS_6                             3                              26
  CLUS_7                             4                              15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       28      9     32
  DEL PEAK 25(12Q24.33) WILD-TYPE     81     38     67
D50V5, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            28                              81
  CLUS_2                             9                              38
  CLUS_3                            32                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(12Q24.33) MUTATED       24      5     36      4
  DEL PEAK 25(12Q24.33) WILD-TYPE     58     32     78     18
D50V6, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            24                              58
  CLUS_2                             5                              32
  CLUS_3                            36                              78
  CLUS_4                             4                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(12Q24.33) MUTATED       25     22      8
  DEL PEAK 25(12Q24.33) WILD-TYPE     60     42     37
D50V7, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                            25                              60
  CLUS_2                            22                              42
  CLUS_3                             8                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(12Q24.33) MUTATED        6     11     13      5      4      8
  DEL PEAK 25(12Q24.33) WILD-TYPE     18     21     24     18      8     15
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 25(12Q24.33) MUTATED        2      6
  DEL PEAK 25(12Q24.33) WILD-TYPE     19     16
D50V8, multiclass
        clus
vv       DEL PEAK 25(12Q24.33) MUTATED DEL PEAK 25(12Q24.33) WILD-TYPE
  CLUS_1                             6                              18
  CLUS_2                            11                              21
  CLUS_3                            13                              24
  CLUS_4                             5                              18
  CLUS_5                             4                               8
  CLUS_6                             8                              15
  CLUS_7                             2                              19
  CLUS_8                             6                              16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 26(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       21     13     27     47     31     40
  DEL PEAK 26(13Q14.2) WILD-TYPE      5     45     16      4      3      4
                                vv
clus                             CLUS_7
  DEL PEAK 26(13Q14.2) MUTATED        1
  DEL PEAK 26(13Q14.2) WILD-TYPE      0
D51V1, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           21                              5
  CLUS_2                           13                             45
  CLUS_3                           27                             16
  CLUS_4                           47                              4
  CLUS_5                           31                              3
  CLUS_6                           40                              4
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       34     18     55     12      9     34
  DEL PEAK 26(13Q14.2) WILD-TYPE      8     23      2     20      9      9
                                vv
clus                             CLUS_7
  DEL PEAK 26(13Q14.2) MUTATED        5
  DEL PEAK 26(13Q14.2) WILD-TYPE      0
D51V2, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           34                              8
  CLUS_2                           18                             23
  CLUS_3                           55                              2
  CLUS_4                           12                             20
  CLUS_5                            9                              9
  CLUS_6                           34                              9
  CLUS_7                            5                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       41     68     50     19
  DEL PEAK 26(13Q14.2) WILD-TYPE     27      8     13     27
D51V3, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           41                             27
  CLUS_2                           68                              8
  CLUS_3                           50                             13
  CLUS_4                           19                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       34     11     47     13     44     22
  DEL PEAK 26(13Q14.2) WILD-TYPE     13     11      2     15     15      7
                                vv
clus                             CLUS_7
  DEL PEAK 26(13Q14.2) MUTATED        7
  DEL PEAK 26(13Q14.2) WILD-TYPE     12
D51V4, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           34                             13
  CLUS_2                           11                             11
  CLUS_3                           47                              2
  CLUS_4                           13                             15
  CLUS_5                           44                             15
  CLUS_6                           22                              7
  CLUS_7                            7                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       61     32     85
  DEL PEAK 26(13Q14.2) WILD-TYPE     48     15     14
D51V5, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           61                             48
  CLUS_2                           32                             15
  CLUS_3                           85                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(13Q14.2) MUTATED       54     20     97      7
  DEL PEAK 26(13Q14.2) WILD-TYPE     28     17     17     15
D51V6, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           54                             28
  CLUS_2                           20                             17
  CLUS_3                           97                             17
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(13Q14.2) MUTATED       50     56     35
  DEL PEAK 26(13Q14.2) WILD-TYPE     35      8     10
D51V7, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           50                             35
  CLUS_2                           56                              8
  CLUS_3                           35                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(13Q14.2) MUTATED       17     21     36     19      8     16
  DEL PEAK 26(13Q14.2) WILD-TYPE      7     11      1      4      4      7
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(13Q14.2) MUTATED       15      9
  DEL PEAK 26(13Q14.2) WILD-TYPE      6     13
D51V8, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           17                              7
  CLUS_2                           21                             11
  CLUS_3                           36                              1
  CLUS_4                           19                              4
  CLUS_5                            8                              4
  CLUS_6                           16                              7
  CLUS_7                           15                              6
  CLUS_8                            9                             13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 27(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED        7      4     19     18      5     26
  DEL PEAK 27(14Q24.1) WILD-TYPE     19     54     24     33     29     18
                                vv
clus                             CLUS_7
  DEL PEAK 27(14Q24.1) MUTATED        1
  DEL PEAK 27(14Q24.1) WILD-TYPE      0
D52V1, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                            7                             19
  CLUS_2                            4                             54
  CLUS_3                           19                             24
  CLUS_4                           18                             33
  CLUS_5                            5                             29
  CLUS_6                           26                             18
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       20      5     15      7     11     16
  DEL PEAK 27(14Q24.1) WILD-TYPE     22     36     42     25      7     27
                                vv
clus                             CLUS_7
  DEL PEAK 27(14Q24.1) MUTATED        2
  DEL PEAK 27(14Q24.1) WILD-TYPE      3
D52V2, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           20                             22
  CLUS_2                            5                             36
  CLUS_3                           15                             42
  CLUS_4                            7                             25
  CLUS_5                           11                              7
  CLUS_6                           16                             27
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       24     29     16     11
  DEL PEAK 27(14Q24.1) WILD-TYPE     44     47     47     35
D52V3, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           24                             44
  CLUS_2                           29                             47
  CLUS_3                           16                             47
  CLUS_4                           11                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       21      5      9      9     13     21
  DEL PEAK 27(14Q24.1) WILD-TYPE     26     17     40     19     46      8
                                vv
clus                             CLUS_7
  DEL PEAK 27(14Q24.1) MUTATED        2
  DEL PEAK 27(14Q24.1) WILD-TYPE     17
D52V4, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           21                             26
  CLUS_2                            5                             17
  CLUS_3                            9                             40
  CLUS_4                            9                             19
  CLUS_5                           13                             46
  CLUS_6                           21                              8
  CLUS_7                            2                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       27     15     38
  DEL PEAK 27(14Q24.1) WILD-TYPE     82     32     61
D52V5, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           27                             82
  CLUS_2                           15                             32
  CLUS_3                           38                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(14Q24.1) MUTATED       22     12     45      1
  DEL PEAK 27(14Q24.1) WILD-TYPE     60     25     69     21
D52V6, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           22                             60
  CLUS_2                           12                             25
  CLUS_3                           45                             69
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(14Q24.1) MUTATED       22     26     14
  DEL PEAK 27(14Q24.1) WILD-TYPE     63     38     31
D52V7, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           22                             63
  CLUS_2                           26                             38
  CLUS_3                           14                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(14Q24.1) MUTATED       13     11     12     10      5      5
  DEL PEAK 27(14Q24.1) WILD-TYPE     11     21     25     13      7     18
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(14Q24.1) MUTATED        4      2
  DEL PEAK 27(14Q24.1) WILD-TYPE     17     20
D52V8, multiclass
        clus
vv       DEL PEAK 27(14Q24.1) MUTATED DEL PEAK 27(14Q24.1) WILD-TYPE
  CLUS_1                           13                             11
  CLUS_2                           11                             21
  CLUS_3                           12                             25
  CLUS_4                           10                             13
  CLUS_5                            5                              7
  CLUS_6                            5                             18
  CLUS_7                            4                             17
  CLUS_8                            2                             20
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 28(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       14     10     18     33     28     26
  DEL PEAK 28(16Q11.2) WILD-TYPE     12     48     25     18      6     18
                                vv
clus                             CLUS_7
  DEL PEAK 28(16Q11.2) MUTATED        1
  DEL PEAK 28(16Q11.2) WILD-TYPE      0
D53V1, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                           10                             48
  CLUS_3                           18                             25
  CLUS_4                           33                             18
  CLUS_5                           28                              6
  CLUS_6                           26                             18
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       23     11     40      9      9     28
  DEL PEAK 28(16Q11.2) WILD-TYPE     19     30     17     23      9     15
                                vv
clus                             CLUS_7
  DEL PEAK 28(16Q11.2) MUTATED        2
  DEL PEAK 28(16Q11.2) WILD-TYPE      3
D53V2, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           23                             19
  CLUS_2                           11                             30
  CLUS_3                           40                             17
  CLUS_4                            9                             23
  CLUS_5                            9                              9
  CLUS_6                           28                             15
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q11.2) MUTATED       28     50     37     14
  DEL PEAK 28(16Q11.2) WILD-TYPE     40     26     26     32
D53V3, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           28                             40
  CLUS_2                           50                             26
  CLUS_3                           37                             26
  CLUS_4                           14                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       24      8     34      7     34     17
  DEL PEAK 28(16Q11.2) WILD-TYPE     23     14     15     21     25     12
                                vv
clus                             CLUS_7
  DEL PEAK 28(16Q11.2) MUTATED        5
  DEL PEAK 28(16Q11.2) WILD-TYPE     14
D53V4, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                            8                             14
  CLUS_3                           34                             15
  CLUS_4                            7                             21
  CLUS_5                           34                             25
  CLUS_6                           17                             12
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q11.2) MUTATED       42     27     60
  DEL PEAK 28(16Q11.2) WILD-TYPE     67     20     39
D53V5, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           42                             67
  CLUS_2                           27                             20
  CLUS_3                           60                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q11.2) MUTATED       38     11     73      7
  DEL PEAK 28(16Q11.2) WILD-TYPE     44     26     41     15
D53V6, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           38                             44
  CLUS_2                           11                             26
  CLUS_3                           73                             41
  CLUS_4                            7                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q11.2) MUTATED       31     47     29
  DEL PEAK 28(16Q11.2) WILD-TYPE     54     17     16
D53V7, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           47                             17
  CLUS_3                           29                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q11.2) MUTATED       12     10     31     14      8     13
  DEL PEAK 28(16Q11.2) WILD-TYPE     12     22      6      9      4     10
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 28(16Q11.2) MUTATED       14      5
  DEL PEAK 28(16Q11.2) WILD-TYPE      7     17
D53V8, multiclass
        clus
vv       DEL PEAK 28(16Q11.2) MUTATED DEL PEAK 28(16Q11.2) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                           10                             22
  CLUS_3                           31                              6
  CLUS_4                           14                              9
  CLUS_5                            8                              4
  CLUS_6                           13                             10
  CLUS_7                           14                              7
  CLUS_8                            5                             17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 29(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       14     11     19     33     27     29
  DEL PEAK 29(16Q23.1) WILD-TYPE     12     47     24     18      7     15
                                vv
clus                             CLUS_7
  DEL PEAK 29(16Q23.1) MUTATED        1
  DEL PEAK 29(16Q23.1) WILD-TYPE      0
D54V1, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           14                             12
  CLUS_2                           11                             47
  CLUS_3                           19                             24
  CLUS_4                           33                             18
  CLUS_5                           27                              7
  CLUS_6                           29                             15
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       26     13     40     10      9     27
  DEL PEAK 29(16Q23.1) WILD-TYPE     16     28     17     22      9     16
                                vv
clus                             CLUS_7
  DEL PEAK 29(16Q23.1) MUTATED        2
  DEL PEAK 29(16Q23.1) WILD-TYPE      3
D54V2, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           26                             16
  CLUS_2                           13                             28
  CLUS_3                           40                             17
  CLUS_4                           10                             22
  CLUS_5                            9                              9
  CLUS_6                           27                             16
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.1) MUTATED       30     50     38     15
  DEL PEAK 29(16Q23.1) WILD-TYPE     38     26     25     31
D54V3, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           30                             38
  CLUS_2                           50                             26
  CLUS_3                           38                             25
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       28      8     34      9     32     17
  DEL PEAK 29(16Q23.1) WILD-TYPE     19     14     15     19     27     12
                                vv
clus                             CLUS_7
  DEL PEAK 29(16Q23.1) MUTATED        5
  DEL PEAK 29(16Q23.1) WILD-TYPE     14
D54V4, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           28                             19
  CLUS_2                            8                             14
  CLUS_3                           34                             15
  CLUS_4                            9                             19
  CLUS_5                           32                             27
  CLUS_6                           17                             12
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       44     28     61
  DEL PEAK 29(16Q23.1) WILD-TYPE     65     19     38
D54V5, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           44                             65
  CLUS_2                           28                             19
  CLUS_3                           61                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q23.1) MUTATED       40     12     75      6
  DEL PEAK 29(16Q23.1) WILD-TYPE     42     25     39     16
D54V6, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           40                             42
  CLUS_2                           12                             25
  CLUS_3                           75                             39
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q23.1) MUTATED       31     47     31
  DEL PEAK 29(16Q23.1) WILD-TYPE     54     17     14
D54V7, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           47                             17
  CLUS_3                           31                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(16Q23.1) MUTATED       14     10     30     15      9     10
  DEL PEAK 29(16Q23.1) WILD-TYPE     10     22      7      8      3     13
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 29(16Q23.1) MUTATED       15      6
  DEL PEAK 29(16Q23.1) WILD-TYPE      6     16
D54V8, multiclass
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  CLUS_1                           14                             10
  CLUS_2                           10                             22
  CLUS_3                           30                              7
  CLUS_4                           15                              8
  CLUS_5                            9                              3
  CLUS_6                           10                             13
  CLUS_7                           15                              6
  CLUS_8                            6                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 30(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED        9      9     13     45     23     29
  DEL PEAK 30(17P13.1) WILD-TYPE     17     49     30      6     11     15
                                vv
clus                             CLUS_7
  DEL PEAK 30(17P13.1) MUTATED        1
  DEL PEAK 30(17P13.1) WILD-TYPE      0
D55V1, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                            9                             49
  CLUS_3                           13                             30
  CLUS_4                           45                              6
  CLUS_5                           23                             11
  CLUS_6                           29                             15
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       15     13     46     12      8     22
  DEL PEAK 30(17P13.1) WILD-TYPE     27     28     11     20     10     21
                                vv
clus                             CLUS_7
  DEL PEAK 30(17P13.1) MUTATED        2
  DEL PEAK 30(17P13.1) WILD-TYPE      3
D55V2, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                           13                             28
  CLUS_3                           46                             11
  CLUS_4                           12                             20
  CLUS_5                            8                             10
  CLUS_6                           22                             21
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P13.1) MUTATED       23     54     35     15
  DEL PEAK 30(17P13.1) WILD-TYPE     45     22     28     31
D55V3, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           23                             45
  CLUS_2                           54                             22
  CLUS_3                           35                             28
  CLUS_4                           15                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       18      9     40      7     29     14
  DEL PEAK 30(17P13.1) WILD-TYPE     29     13      9     21     30     15
                                vv
clus                             CLUS_7
  DEL PEAK 30(17P13.1) MUTATED       10
  DEL PEAK 30(17P13.1) WILD-TYPE      9
D55V4, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                            9                             13
  CLUS_3                           40                              9
  CLUS_4                            7                             21
  CLUS_5                           29                             30
  CLUS_6                           14                             15
  CLUS_7                           10                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED       37     26     64
  DEL PEAK 30(17P13.1) WILD-TYPE     72     21     35
D55V5, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           37                             72
  CLUS_2                           26                             21
  CLUS_3                           64                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17P13.1) MUTATED       30     16     75      6
  DEL PEAK 30(17P13.1) WILD-TYPE     52     21     39     16
D55V6, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           30                             52
  CLUS_2                           16                             21
  CLUS_3                           75                             39
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17P13.1) MUTATED       27     44     29
  DEL PEAK 30(17P13.1) WILD-TYPE     58     20     16
D55V7, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           44                             20
  CLUS_3                           29                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17P13.1) MUTATED       12      8     29     14      7     10
  DEL PEAK 30(17P13.1) WILD-TYPE     12     24      8      9      5     13
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 30(17P13.1) MUTATED       12      8
  DEL PEAK 30(17P13.1) WILD-TYPE      9     14
D55V8, multiclass
        clus
vv       DEL PEAK 30(17P13.1) MUTATED DEL PEAK 30(17P13.1) WILD-TYPE
  CLUS_1                           12                             12
  CLUS_2                            8                             24
  CLUS_3                           29                              8
  CLUS_4                           14                              9
  CLUS_5                            7                              5
  CLUS_6                           10                             13
  CLUS_7                           12                              9
  CLUS_8                            8                             14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 31(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       13      7     19     10     15     17
  DEL PEAK 31(17Q11.2) WILD-TYPE     13     51     24     41     19     27
                                vv
clus                             CLUS_7
  DEL PEAK 31(17Q11.2) MUTATED        0
  DEL PEAK 31(17Q11.2) WILD-TYPE      1
D56V1, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           13                             13
  CLUS_2                            7                             51
  CLUS_3                           19                             24
  CLUS_4                           10                             41
  CLUS_5                           15                             19
  CLUS_6                           17                             27
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       22      8      9      9      0     23
  DEL PEAK 31(17Q11.2) WILD-TYPE     20     33     48     23     18     20
                                vv
clus                             CLUS_7
  DEL PEAK 31(17Q11.2) MUTATED        2
  DEL PEAK 31(17Q11.2) WILD-TYPE      3
D56V2, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           22                             20
  CLUS_2                            8                             33
  CLUS_3                            9                             48
  CLUS_4                            9                             23
  CLUS_5                            0                             18
  CLUS_6                           23                             20
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q11.2) MUTATED       30     10     29     12
  DEL PEAK 31(17Q11.2) WILD-TYPE     38     66     34     34
D56V3, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           30                             38
  CLUS_2                           10                             66
  CLUS_3                           29                             34
  CLUS_4                           12                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       24      7      7      7     26      3
  DEL PEAK 31(17Q11.2) WILD-TYPE     23     15     42     21     33     26
                                vv
clus                             CLUS_7
  DEL PEAK 31(17Q11.2) MUTATED        7
  DEL PEAK 31(17Q11.2) WILD-TYPE     12
D56V4, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           24                             23
  CLUS_2                            7                             15
  CLUS_3                            7                             42
  CLUS_4                            7                             21
  CLUS_5                           26                             33
  CLUS_6                            3                             26
  CLUS_7                            7                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       38     21     21
  DEL PEAK 31(17Q11.2) WILD-TYPE     71     26     78
D56V5, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           38                             71
  CLUS_2                           21                             26
  CLUS_3                           21                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q11.2) MUTATED       34     11     29      6
  DEL PEAK 31(17Q11.2) WILD-TYPE     48     26     85     16
D56V6, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           34                             48
  CLUS_2                           11                             26
  CLUS_3                           29                             85
  CLUS_4                            6                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q11.2) MUTATED       31     13     21
  DEL PEAK 31(17Q11.2) WILD-TYPE     54     51     24
D56V7, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           31                             54
  CLUS_2                           13                             51
  CLUS_3                           21                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q11.2) MUTATED       11     13      5     12      1      7
  DEL PEAK 31(17Q11.2) WILD-TYPE     13     19     32     11     11     16
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 31(17Q11.2) MUTATED        8      8
  DEL PEAK 31(17Q11.2) WILD-TYPE     13     14
D56V8, multiclass
        clus
vv       DEL PEAK 31(17Q11.2) MUTATED DEL PEAK 31(17Q11.2) WILD-TYPE
  CLUS_1                           11                             13
  CLUS_2                           13                             19
  CLUS_3                            5                             32
  CLUS_4                           12                             11
  CLUS_5                            1                             11
  CLUS_6                            7                             16
  CLUS_7                            8                             13
  CLUS_8                            8                             14
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 32(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       13      5     13      6     17     12
  DEL PEAK 32(17Q25.3) WILD-TYPE     13     53     30     45     17     32
                                vv
clus                             CLUS_7
  DEL PEAK 32(17Q25.3) MUTATED        1
  DEL PEAK 32(17Q25.3) WILD-TYPE      0
D57V1, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           13                             13
  CLUS_2                            5                             53
  CLUS_3                           13                             30
  CLUS_4                            6                             45
  CLUS_5                           17                             17
  CLUS_6                           12                             32
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       13      5     21      4      2     17
  DEL PEAK 32(17Q25.3) WILD-TYPE     29     36     36     28     16     26
                                vv
clus                             CLUS_7
  DEL PEAK 32(17Q25.3) MUTATED        1
  DEL PEAK 32(17Q25.3) WILD-TYPE      4
D57V2, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            5                             36
  CLUS_3                           21                             36
  CLUS_4                            4                             28
  CLUS_5                            2                             16
  CLUS_6                           17                             26
  CLUS_7                            1                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17Q25.3) MUTATED       17     24     19      7
  DEL PEAK 32(17Q25.3) WILD-TYPE     51     52     44     39
D57V3, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           17                             51
  CLUS_2                           24                             52
  CLUS_3                           19                             44
  CLUS_4                            7                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       15      5     16      4     17      8
  DEL PEAK 32(17Q25.3) WILD-TYPE     32     17     33     24     42     21
                                vv
clus                             CLUS_7
  DEL PEAK 32(17Q25.3) MUTATED        2
  DEL PEAK 32(17Q25.3) WILD-TYPE     17
D57V4, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                            5                             17
  CLUS_3                           16                             33
  CLUS_4                            4                             24
  CLUS_5                           17                             42
  CLUS_6                            8                             21
  CLUS_7                            2                             17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q25.3) MUTATED       25     12     29
  DEL PEAK 32(17Q25.3) WILD-TYPE     84     35     70
D57V5, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           25                             84
  CLUS_2                           12                             35
  CLUS_3                           29                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(17Q25.3) MUTATED       23      5     37      1
  DEL PEAK 32(17Q25.3) WILD-TYPE     59     32     77     21
D57V6, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           23                             59
  CLUS_2                            5                             32
  CLUS_3                           37                             77
  CLUS_4                            1                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(17Q25.3) MUTATED       21     23     10
  DEL PEAK 32(17Q25.3) WILD-TYPE     64     41     35
D57V7, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           21                             64
  CLUS_2                           23                             41
  CLUS_3                           10                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(17Q25.3) MUTATED       10      9     11      5      7      6
  DEL PEAK 32(17Q25.3) WILD-TYPE     14     23     26     18      5     17
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 32(17Q25.3) MUTATED        3      3
  DEL PEAK 32(17Q25.3) WILD-TYPE     18     19
D57V8, multiclass
        clus
vv       DEL PEAK 32(17Q25.3) MUTATED DEL PEAK 32(17Q25.3) WILD-TYPE
  CLUS_1                           10                             14
  CLUS_2                            9                             23
  CLUS_3                           11                             26
  CLUS_4                            5                             18
  CLUS_5                            7                              5
  CLUS_6                            6                             17
  CLUS_7                            3                             18
  CLUS_8                            3                             19
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 33(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED        9      9     16     15     20     17      0
  DEL PEAK 33(18Q23) WILD-TYPE     17     49     27     36     14     27      1
D58V1, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                          9                           17
  CLUS_2                          9                           49
  CLUS_3                         16                           27
  CLUS_4                         15                           36
  CLUS_5                         20                           14
  CLUS_6                         17                           27
  CLUS_7                          0                            1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED       14     13     14      6      3     28      1
  DEL PEAK 33(18Q23) WILD-TYPE     28     28     43     26     15     15      4
D58V2, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         14                           28
  CLUS_2                         13                           28
  CLUS_3                         14                           43
  CLUS_4                          6                           26
  CLUS_5                          3                           15
  CLUS_6                         28                           15
  CLUS_7                          1                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(18Q23) MUTATED       21     17     37     10
  DEL PEAK 33(18Q23) WILD-TYPE     47     59     26     36
D58V3, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         21                           47
  CLUS_2                         17                           59
  CLUS_3                         37                           26
  CLUS_4                         10                           36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED       16      7     12      8     33      5      4
  DEL PEAK 33(18Q23) WILD-TYPE     31     15     37     20     26     24     15
D58V4, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         16                           31
  CLUS_2                          7                           15
  CLUS_3                         12                           37
  CLUS_4                          8                           20
  CLUS_5                         33                           26
  CLUS_6                          5                           24
  CLUS_7                          4                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       36     24     25
  DEL PEAK 33(18Q23) WILD-TYPE     73     23     74
D58V5, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         36                           73
  CLUS_2                         24                           23
  CLUS_3                         25                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(18Q23) MUTATED       34     13     34      4
  DEL PEAK 33(18Q23) WILD-TYPE     48     24     80     18
D58V6, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         34                           48
  CLUS_2                         13                           24
  CLUS_3                         34                           80
  CLUS_4                          4                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(18Q23) MUTATED       27     21     22
  DEL PEAK 33(18Q23) WILD-TYPE     58     43     23
D58V7, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         27                           58
  CLUS_2                         21                           43
  CLUS_3                         22                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(18Q23) MUTATED        6      8      9     11      2     14     15
  DEL PEAK 33(18Q23) WILD-TYPE     18     24     28     12     10      9      6
                              vv
clus                           CLUS_8
  DEL PEAK 33(18Q23) MUTATED        5
  DEL PEAK 33(18Q23) WILD-TYPE     17
D58V8, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                          6                           18
  CLUS_2                          8                           24
  CLUS_3                          9                           28
  CLUS_4                         11                           12
  CLUS_5                          2                           10
  CLUS_6                         14                            9
  CLUS_7                         15                            6
  CLUS_8                          5                           17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 34(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        9      5      8     16     17     14
  DEL PEAK 34(19P13.3) WILD-TYPE     17     53     35     35     17     30
                                vv
clus                             CLUS_7
  DEL PEAK 34(19P13.3) MUTATED        1
  DEL PEAK 34(19P13.3) WILD-TYPE      0
D59V1, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            9                             17
  CLUS_2                            5                             53
  CLUS_3                            8                             35
  CLUS_4                           16                             35
  CLUS_5                           17                             17
  CLUS_6                           14                             30
  CLUS_7                            1                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        8      4     23      5      5     16
  DEL PEAK 34(19P13.3) WILD-TYPE     34     37     34     27     13     27
                                vv
clus                             CLUS_7
  DEL PEAK 34(19P13.3) MUTATED        3
  DEL PEAK 34(19P13.3) WILD-TYPE      2
D59V2, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            4                             37
  CLUS_3                           23                             34
  CLUS_4                            5                             27
  CLUS_5                            5                             13
  CLUS_6                           16                             27
  CLUS_7                            3                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19P13.3) MUTATED        9     31     23      7
  DEL PEAK 34(19P13.3) WILD-TYPE     59     45     40     39
D59V3, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            9                             59
  CLUS_2                           31                             45
  CLUS_3                           23                             40
  CLUS_4                            7                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        8      1     20      5     21     11
  DEL PEAK 34(19P13.3) WILD-TYPE     39     21     29     23     38     18
                                vv
clus                             CLUS_7
  DEL PEAK 34(19P13.3) MUTATED        4
  DEL PEAK 34(19P13.3) WILD-TYPE     15
D59V4, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                            1                             21
  CLUS_3                           20                             29
  CLUS_4                            5                             23
  CLUS_5                           21                             38
  CLUS_6                           11                             18
  CLUS_7                            4                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       21     11     36
  DEL PEAK 34(19P13.3) WILD-TYPE     88     36     63
D59V5, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           21                             88
  CLUS_2                           11                             36
  CLUS_3                           36                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19P13.3) MUTATED       19      4     42      3
  DEL PEAK 34(19P13.3) WILD-TYPE     63     33     72     19
D59V6, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                            4                             33
  CLUS_3                           42                             72
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19P13.3) MUTATED       19     29      7
  DEL PEAK 34(19P13.3) WILD-TYPE     66     35     38
D59V7, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           19                             66
  CLUS_2                           29                             35
  CLUS_3                            7                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19P13.3) MUTATED        3      5     18      9      4      8
  DEL PEAK 34(19P13.3) WILD-TYPE     21     27     19     14      8     15
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 34(19P13.3) MUTATED        4      4
  DEL PEAK 34(19P13.3) WILD-TYPE     17     18
D59V8, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            3                             21
  CLUS_2                            5                             27
  CLUS_3                           18                             19
  CLUS_4                            9                             14
  CLUS_5                            4                              8
  CLUS_6                            8                             15
  CLUS_7                            4                             17
  CLUS_8                            4                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 35(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       12      3     21     30     15     25
  DEL PEAK 35(19Q13.43) WILD-TYPE     14     55     22     21     19     19
                                 vv
clus                              CLUS_7
  DEL PEAK 35(19Q13.43) MUTATED        0
  DEL PEAK 35(19Q13.43) WILD-TYPE      1
D60V1, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            12                              14
  CLUS_2                             3                              55
  CLUS_3                            21                              22
  CLUS_4                            30                              21
  CLUS_5                            15                              19
  CLUS_6                            25                              19
  CLUS_7                             0                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       23      6     30      8      7     20
  DEL PEAK 35(19Q13.43) WILD-TYPE     19     35     27     24     11     23
                                 vv
clus                              CLUS_7
  DEL PEAK 35(19Q13.43) MUTATED        3
  DEL PEAK 35(19Q13.43) WILD-TYPE      2
D60V2, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            23                              19
  CLUS_2                             6                              35
  CLUS_3                            30                              27
  CLUS_4                             8                              24
  CLUS_5                             7                              11
  CLUS_6                            20                              23
  CLUS_7                             3                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.43) MUTATED       25     37     26     16
  DEL PEAK 35(19Q13.43) WILD-TYPE     43     39     37     30
D60V3, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            25                              43
  CLUS_2                            37                              39
  CLUS_3                            26                              37
  CLUS_4                            16                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       20      8     27     13     20     11
  DEL PEAK 35(19Q13.43) WILD-TYPE     27     14     22     15     39     18
                                 vv
clus                              CLUS_7
  DEL PEAK 35(19Q13.43) MUTATED        5
  DEL PEAK 35(19Q13.43) WILD-TYPE     14
D60V4, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            20                              27
  CLUS_2                             8                              14
  CLUS_3                            27                              22
  CLUS_4                            13                              15
  CLUS_5                            20                              39
  CLUS_6                            11                              18
  CLUS_7                             5                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       42     17     46
  DEL PEAK 35(19Q13.43) WILD-TYPE     67     30     53
D60V5, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            42                              67
  CLUS_2                            17                              30
  CLUS_3                            46                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(19Q13.43) MUTATED       37     14     51      3
  DEL PEAK 35(19Q13.43) WILD-TYPE     45     23     63     19
D60V6, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            37                              45
  CLUS_2                            14                              23
  CLUS_3                            51                              63
  CLUS_4                             3                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(19Q13.43) MUTATED       32     29     22
  DEL PEAK 35(19Q13.43) WILD-TYPE     53     35     23
D60V7, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            32                              53
  CLUS_2                            29                              35
  CLUS_3                            22                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(19Q13.43) MUTATED       14     17     22      7      2      6
  DEL PEAK 35(19Q13.43) WILD-TYPE     10     15     15     16     10     17
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 35(19Q13.43) MUTATED       10      5
  DEL PEAK 35(19Q13.43) WILD-TYPE     11     17
D60V8, multiclass
        clus
vv       DEL PEAK 35(19Q13.43) MUTATED DEL PEAK 35(19Q13.43) WILD-TYPE
  CLUS_1                            14                              10
  CLUS_2                            17                              15
  CLUS_3                            22                              15
  CLUS_4                             7                              16
  CLUS_5                             2                              10
  CLUS_6                             6                              17
  CLUS_7                            10                              11
  CLUS_8                             5                              17
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 36(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED        2      3      7     17      7     15
  DEL PEAK 36(21Q11.2) WILD-TYPE     24     55     36     34     27     29
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q11.2) MUTATED        0
  DEL PEAK 36(21Q11.2) WILD-TYPE      1
D61V1, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                            2                             24
  CLUS_2                            3                             55
  CLUS_3                            7                             36
  CLUS_4                           17                             34
  CLUS_5                            7                             27
  CLUS_6                           15                             29
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED        8      7      8      6      1     13
  DEL PEAK 36(21Q11.2) WILD-TYPE     34     34     49     26     17     30
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q11.2) MUTATED        2
  DEL PEAK 36(21Q11.2) WILD-TYPE      3
D61V2, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                            7                             34
  CLUS_3                            8                             49
  CLUS_4                            6                             26
  CLUS_5                            1                             17
  CLUS_6                           13                             30
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q11.2) MUTATED       13      9     20      8
  DEL PEAK 36(21Q11.2) WILD-TYPE     55     67     43     38
D61V3, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           13                             55
  CLUS_2                            9                             67
  CLUS_3                           20                             43
  CLUS_4                            8                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED       10      3      6      6     17      3
  DEL PEAK 36(21Q11.2) WILD-TYPE     37     19     43     22     42     26
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q11.2) MUTATED        5
  DEL PEAK 36(21Q11.2) WILD-TYPE     14
D61V4, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                            3                             19
  CLUS_3                            6                             43
  CLUS_4                            6                             22
  CLUS_5                           17                             42
  CLUS_6                            3                             26
  CLUS_7                            5                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q11.2) MUTATED       20     18     13
  DEL PEAK 36(21Q11.2) WILD-TYPE     89     29     86
D61V5, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           20                             89
  CLUS_2                           18                             29
  CLUS_3                           13                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q11.2) MUTATED       17      6     24      4
  DEL PEAK 36(21Q11.2) WILD-TYPE     65     31     90     18
D61V6, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           17                             65
  CLUS_2                            6                             31
  CLUS_3                           24                             90
  CLUS_4                            4                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q11.2) MUTATED       17     11     16
  DEL PEAK 36(21Q11.2) WILD-TYPE     68     53     29
D61V7, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           11                             53
  CLUS_3                           16                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q11.2) MUTATED        4      5      6      8      1      6
  DEL PEAK 36(21Q11.2) WILD-TYPE     20     27     31     15     11     17
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 36(21Q11.2) MUTATED        8      6
  DEL PEAK 36(21Q11.2) WILD-TYPE     13     16
D61V8, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                            4                             20
  CLUS_2                            5                             27
  CLUS_3                            6                             31
  CLUS_4                            8                             15
  CLUS_5                            1                             11
  CLUS_6                            6                             17
  CLUS_7                            8                             13
  CLUS_8                            6                             16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 37(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED        6      5     15     13      9     18
  DEL PEAK 37(21Q22.3) WILD-TYPE     20     53     28     38     25     26
                                vv
clus                             CLUS_7
  DEL PEAK 37(21Q22.3) MUTATED        0
  DEL PEAK 37(21Q22.3) WILD-TYPE      1
D62V1, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                            6                             20
  CLUS_2                            5                             53
  CLUS_3                           15                             28
  CLUS_4                           13                             38
  CLUS_5                            9                             25
  CLUS_6                           18                             26
  CLUS_7                            0                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED       18      6     12      4      2     15
  DEL PEAK 37(21Q22.3) WILD-TYPE     24     35     45     28     16     28
                                vv
clus                             CLUS_7
  DEL PEAK 37(21Q22.3) MUTATED        2
  DEL PEAK 37(21Q22.3) WILD-TYPE      3
D62V2, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           18                             24
  CLUS_2                            6                             35
  CLUS_3                           12                             45
  CLUS_4                            4                             28
  CLUS_5                            2                             16
  CLUS_6                           15                             28
  CLUS_7                            2                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(21Q22.3) MUTATED       23     14     22      7
  DEL PEAK 37(21Q22.3) WILD-TYPE     45     62     41     39
D62V3, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           23                             45
  CLUS_2                           14                             62
  CLUS_3                           22                             41
  CLUS_4                            7                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED       17      3     11     10     19      3
  DEL PEAK 37(21Q22.3) WILD-TYPE     30     19     38     18     40     26
                                vv
clus                             CLUS_7
  DEL PEAK 37(21Q22.3) MUTATED        3
  DEL PEAK 37(21Q22.3) WILD-TYPE     16
D62V4, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                            3                             19
  CLUS_3                           11                             38
  CLUS_4                           10                             18
  CLUS_5                           19                             40
  CLUS_6                            3                             26
  CLUS_7                            3                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       29     15     22
  DEL PEAK 37(21Q22.3) WILD-TYPE     80     32     77
D62V5, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           29                             80
  CLUS_2                           15                             32
  CLUS_3                           22                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(21Q22.3) MUTATED       28      5     30      3
  DEL PEAK 37(21Q22.3) WILD-TYPE     54     32     84     19
D62V6, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           28                             54
  CLUS_2                            5                             32
  CLUS_3                           30                             84
  CLUS_4                            3                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(21Q22.3) MUTATED       24     17     17
  DEL PEAK 37(21Q22.3) WILD-TYPE     61     47     28
D62V7, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           17                             47
  CLUS_3                           17                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(21Q22.3) MUTATED        6     12      8     10      3      7
  DEL PEAK 37(21Q22.3) WILD-TYPE     18     20     29     13      9     16
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 37(21Q22.3) MUTATED        8      4
  DEL PEAK 37(21Q22.3) WILD-TYPE     13     18
D62V8, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                            6                             18
  CLUS_2                           12                             20
  CLUS_3                            8                             29
  CLUS_4                           10                             13
  CLUS_5                            3                              9
  CLUS_6                            7                             16
  CLUS_7                            8                             13
  CLUS_8                            4                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 38(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED        9      8      9      9     18     29
  DEL PEAK 38(22Q13.32) WILD-TYPE     17     50     34     42     16     15
                                 vv
clus                              CLUS_7
  DEL PEAK 38(22Q13.32) MUTATED        1
  DEL PEAK 38(22Q13.32) WILD-TYPE      0
D63V1, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                             9                              17
  CLUS_2                             8                              50
  CLUS_3                             9                              34
  CLUS_4                             9                              42
  CLUS_5                            18                              16
  CLUS_6                            29                              15
  CLUS_7                             1                               0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       18      8     15     10      7     16
  DEL PEAK 38(22Q13.32) WILD-TYPE     24     33     42     22     11     27
                                 vv
clus                              CLUS_7
  DEL PEAK 38(22Q13.32) MUTATED        4
  DEL PEAK 38(22Q13.32) WILD-TYPE      1
D63V2, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            18                              24
  CLUS_2                             8                              33
  CLUS_3                            15                              42
  CLUS_4                            10                              22
  CLUS_5                             7                              11
  CLUS_6                            16                              27
  CLUS_7                             4                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(22Q13.32) MUTATED       24     24     18     16
  DEL PEAK 38(22Q13.32) WILD-TYPE     44     52     45     30
D63V3, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            24                              44
  CLUS_2                            24                              52
  CLUS_3                            18                              45
  CLUS_4                            16                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       20      4     10     11     17     15
  DEL PEAK 38(22Q13.32) WILD-TYPE     27     18     39     17     42     14
                                 vv
clus                              CLUS_7
  DEL PEAK 38(22Q13.32) MUTATED        5
  DEL PEAK 38(22Q13.32) WILD-TYPE     14
D63V4, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            20                              27
  CLUS_2                             4                              18
  CLUS_3                            10                              39
  CLUS_4                            11                              17
  CLUS_5                            17                              42
  CLUS_6                            15                              14
  CLUS_7                             5                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       39     17     26
  DEL PEAK 38(22Q13.32) WILD-TYPE     70     30     73
D63V5, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            39                              70
  CLUS_2                            17                              30
  CLUS_3                            26                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(22Q13.32) MUTATED       29     15     32      6
  DEL PEAK 38(22Q13.32) WILD-TYPE     53     22     82     16
D63V6, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            29                              53
  CLUS_2                            15                              22
  CLUS_3                            32                              82
  CLUS_4                             6                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(22Q13.32) MUTATED       33     23     17
  DEL PEAK 38(22Q13.32) WILD-TYPE     52     41     28
D63V7, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            33                              52
  CLUS_2                            23                              41
  CLUS_3                            17                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(22Q13.32) MUTATED       13     12     12      6      6      9
  DEL PEAK 38(22Q13.32) WILD-TYPE     11     20     25     17      6     14
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 38(22Q13.32) MUTATED        6      9
  DEL PEAK 38(22Q13.32) WILD-TYPE     15     13
D63V8, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            13                              11
  CLUS_2                            12                              20
  CLUS_3                            12                              25
  CLUS_4                             6                              17
  CLUS_5                             6                               6
  CLUS_6                             9                              14
  CLUS_7                             6                              15
  CLUS_8                             9                              13
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 39(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        5      5      6     19      4     15
  DEL PEAK 39(XP21.1) WILD-TYPE     21     53     37     32     30     29
                               vv
clus                            CLUS_7
  DEL PEAK 39(XP21.1) MUTATED        1
  DEL PEAK 39(XP21.1) WILD-TYPE      0
D64V1, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           5                            21
  CLUS_2                           5                            53
  CLUS_3                           6                            37
  CLUS_4                          19                            32
  CLUS_5                           4                            30
  CLUS_6                          15                            29
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        5      1     19      7      7     10
  DEL PEAK 39(XP21.1) WILD-TYPE     37     40     38     25     11     33
                               vv
clus                            CLUS_7
  DEL PEAK 39(XP21.1) MUTATED        2
  DEL PEAK 39(XP21.1) WILD-TYPE      3
D64V2, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                           1                            40
  CLUS_3                          19                            38
  CLUS_4                           7                            25
  CLUS_5                           7                            11
  CLUS_6                          10                            33
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(XP21.1) MUTATED        8     26     12      8
  DEL PEAK 39(XP21.1) WILD-TYPE     60     50     51     38
D64V3, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           8                            60
  CLUS_2                          26                            50
  CLUS_3                          12                            51
  CLUS_4                           8                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        7      1     15      3     12     11
  DEL PEAK 39(XP21.1) WILD-TYPE     40     21     34     25     47     18
                               vv
clus                            CLUS_7
  DEL PEAK 39(XP21.1) MUTATED        5
  DEL PEAK 39(XP21.1) WILD-TYPE     14
D64V4, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           1                            21
  CLUS_3                          15                            34
  CLUS_4                           3                            25
  CLUS_5                          12                            47
  CLUS_6                          11                            18
  CLUS_7                           5                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XP21.1) MUTATED       15      9     31
  DEL PEAK 39(XP21.1) WILD-TYPE     94     38     68
D64V5, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          15                            94
  CLUS_2                           9                            38
  CLUS_3                          31                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(XP21.1) MUTATED       11      7     31      6
  DEL PEAK 39(XP21.1) WILD-TYPE     71     30     83     16
D64V6, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                           7                            30
  CLUS_3                          31                            83
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XP21.1) MUTATED       14     17      9
  DEL PEAK 39(XP21.1) WILD-TYPE     71     47     36
D64V7, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          14                            71
  CLUS_2                          17                            47
  CLUS_3                           9                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XP21.1) MUTATED        5      2     13      3      2      4
  DEL PEAK 39(XP21.1) WILD-TYPE     19     30     24     20     10     19
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 39(XP21.1) MUTATED        4      7
  DEL PEAK 39(XP21.1) WILD-TYPE     17     15
D64V8, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           5                            19
  CLUS_2                           2                            30
  CLUS_3                          13                            24
  CLUS_4                           3                            20
  CLUS_5                           2                            10
  CLUS_6                           4                            19
  CLUS_7                           4                            17
  CLUS_8                           7                            15
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 40(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       14      5     16     30     23     25
  DEL PEAK 40(XQ21.1) WILD-TYPE     12     53     27     21     11     19
                               vv
clus                            CLUS_7
  DEL PEAK 40(XQ21.1) MUTATED        1
  DEL PEAK 40(XQ21.1) WILD-TYPE      0
D65V1, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                           5                            53
  CLUS_3                          16                            27
  CLUS_4                          30                            21
  CLUS_5                          23                            11
  CLUS_6                          25                            19
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       20      7     41     11      8     15
  DEL PEAK 40(XQ21.1) WILD-TYPE     22     34     16     21     10     28
                               vv
clus                            CLUS_7
  DEL PEAK 40(XQ21.1) MUTATED        2
  DEL PEAK 40(XQ21.1) WILD-TYPE      3
D65V2, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          20                            22
  CLUS_2                           7                            34
  CLUS_3                          41                            16
  CLUS_4                          11                            21
  CLUS_5                           8                            10
  CLUS_6                          15                            28
  CLUS_7                           2                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XQ21.1) MUTATED       25     50     22     16
  DEL PEAK 40(XQ21.1) WILD-TYPE     43     26     41     30
D65V3, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          25                            43
  CLUS_2                          50                            26
  CLUS_3                          22                            41
  CLUS_4                          16                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       19      6     36     13     19     15
  DEL PEAK 40(XQ21.1) WILD-TYPE     28     16     13     15     40     14
                               vv
clus                            CLUS_7
  DEL PEAK 40(XQ21.1) MUTATED        5
  DEL PEAK 40(XQ21.1) WILD-TYPE     14
D65V4, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          19                            28
  CLUS_2                           6                            16
  CLUS_3                          36                            13
  CLUS_4                          13                            15
  CLUS_5                          19                            40
  CLUS_6                          15                            14
  CLUS_7                           5                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ21.1) MUTATED       36     17     60
  DEL PEAK 40(XQ21.1) WILD-TYPE     73     30     39
D65V5, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          36                            73
  CLUS_2                          17                            30
  CLUS_3                          60                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XQ21.1) MUTATED       28     12     67      6
  DEL PEAK 40(XQ21.1) WILD-TYPE     54     25     47     16
D65V6, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          28                            54
  CLUS_2                          12                            25
  CLUS_3                          67                            47
  CLUS_4                           6                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ21.1) MUTATED       29     36     21
  DEL PEAK 40(XQ21.1) WILD-TYPE     56     28     24
D65V7, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          29                            56
  CLUS_2                          36                            28
  CLUS_3                          21                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ21.1) MUTATED       11     16     22     12      7      4
  DEL PEAK 40(XQ21.1) WILD-TYPE     13     16     15     11      5     19
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 40(XQ21.1) MUTATED        8      6
  DEL PEAK 40(XQ21.1) WILD-TYPE     13     16
D65V8, multiclass
        clus
vv       DEL PEAK 40(XQ21.1) MUTATED DEL PEAK 40(XQ21.1) WILD-TYPE
  CLUS_1                          11                            13
  CLUS_2                          16                            16
  CLUS_3                          22                            15
  CLUS_4                          12                            11
  CLUS_5                           7                             5
  CLUS_6                           4                            19
  CLUS_7                           8                            13
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 41(XQ22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       14      7     17     31     24     29
  DEL PEAK 41(XQ22.3) WILD-TYPE     12     51     26     20     10     15
                               vv
clus                            CLUS_7
  DEL PEAK 41(XQ22.3) MUTATED        1
  DEL PEAK 41(XQ22.3) WILD-TYPE      0
D66V1, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          14                            12
  CLUS_2                           7                            51
  CLUS_3                          17                            26
  CLUS_4                          31                            20
  CLUS_5                          24                            10
  CLUS_6                          29                            15
  CLUS_7                           1                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       23      7     42      8      9     19
  DEL PEAK 41(XQ22.3) WILD-TYPE     19     34     15     24      9     24
                               vv
clus                            CLUS_7
  DEL PEAK 41(XQ22.3) MUTATED        4
  DEL PEAK 41(XQ22.3) WILD-TYPE      1
D66V2, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          23                            19
  CLUS_2                           7                            34
  CLUS_3                          42                            15
  CLUS_4                           8                            24
  CLUS_5                           9                             9
  CLUS_6                          19                            24
  CLUS_7                           4                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(XQ22.3) MUTATED       33     54     22     13
  DEL PEAK 41(XQ22.3) WILD-TYPE     35     22     41     33
D66V3, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          33                            35
  CLUS_2                          54                            22
  CLUS_3                          22                            41
  CLUS_4                          13                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       27      5     35     11     21     19
  DEL PEAK 41(XQ22.3) WILD-TYPE     20     17     14     17     38     10
                               vv
clus                            CLUS_7
  DEL PEAK 41(XQ22.3) MUTATED        4
  DEL PEAK 41(XQ22.3) WILD-TYPE     15
D66V4, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          27                            20
  CLUS_2                           5                            17
  CLUS_3                          35                            14
  CLUS_4                          11                            17
  CLUS_5                          21                            38
  CLUS_6                          19                            10
  CLUS_7                           4                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ22.3) MUTATED       40     19     62
  DEL PEAK 41(XQ22.3) WILD-TYPE     69     28     37
D66V5, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          40                            69
  CLUS_2                          19                            28
  CLUS_3                          62                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(XQ22.3) MUTATED       32     10     72      7
  DEL PEAK 41(XQ22.3) WILD-TYPE     50     27     42     15
D66V6, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          32                            50
  CLUS_2                          10                            27
  CLUS_3                          72                            42
  CLUS_4                           7                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(XQ22.3) MUTATED       33     40     22
  DEL PEAK 41(XQ22.3) WILD-TYPE     52     24     23
D66V7, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          33                            52
  CLUS_2                          40                            24
  CLUS_3                          22                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(XQ22.3) MUTATED       14     15     25     11      8      7
  DEL PEAK 41(XQ22.3) WILD-TYPE     10     17     12     12      4     16
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 41(XQ22.3) MUTATED        9      6
  DEL PEAK 41(XQ22.3) WILD-TYPE     12     16
D66V8, multiclass
        clus
vv       DEL PEAK 41(XQ22.3) MUTATED DEL PEAK 41(XQ22.3) WILD-TYPE
  CLUS_1                          14                            10
  CLUS_2                          15                            17
  CLUS_3                          25                            12
  CLUS_4                          11                            12
  CLUS_5                           8                             4
  CLUS_6                           7                            16
  CLUS_7                           9                            12
  CLUS_8                           6                            16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
